AlfalfaGEDB | Msa0569210

M. sativa cultivar zhongmu-4 / Msa0569210

KEGG: K04420
GO: GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0569210	XP_003630274.1	97.297	703	16	2	1	702	1	701	0.0	1400

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0569210	sp\|F4HRJ4\|M3K3A_ARATH	63.617	481	153	11	223	692	131	600	0.0	564

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0569210	G7LE28	97.297	703	16	2	1	702	1	701	0.0	1400

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0569210	MtrunA17_Chr8g0384301	97.297	703	16	2	1	702	1	701	0.0	1400
Msa0569210	MtrunA17_Chr3g0130151	77.263	475	99	4	234	702	176	647	0.0	728
Msa0569210	MtrunA17_Chr3g0130151	45.960	198	68	8	1	170	1	187	1.04e-18	90.5
Msa0569210	MtrunA17_Chr8g0386981	56.010	416	160	6	234	630	331	742	2.25e-144	444
Msa0569210	MtrunA17_Chr1g0202831	54.312	429	168	8	240	647	340	761	4.56e-143	440
Msa0569210	MtrunA17_Chr5g0402601	48.753	361	160	8	220	558	278	635	7.09e-105	335
Msa0569210	MtrunA17_Chr3g0133541	50.000	304	138	6	267	558	269	570	3.43e-93	304
Msa0569210	MtrunA17_Chr7g0272841	48.311	296	143	5	299	586	67	360	2.52e-90	295
Msa0569210	MtrunA17_Chr1g0205931	49.248	266	126	4	299	556	54	318	4.98e-88	289
Msa0569210	MtrunA17_Chr4g0051191	52.632	266	118	7	295	557	158	418	5.68e-82	266

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0569210	AT1G53570.4	63.750	480	153	10	223	692	131	599	0.0	568
Msa0569210	AT1G53570.2	63.750	480	153	10	223	692	131	599	0.0	568
Msa0569210	AT1G53570.3	63.750	480	153	10	223	692	131	599	0.0	568
Msa0569210	AT1G53570.1	63.617	481	153	11	223	692	131	600	0.0	564
Msa0569210	AT1G53570.6	65.920	402	120	8	223	615	131	524	1.72e-174	509
Msa0569210	AT1G53570.7	66.915	402	117	8	223	615	131	525	4.04e-173	506
Msa0569210	AT1G53570.5	59.129	482	147	13	223	692	131	574	3.78e-171	503
Msa0569210	AT1G63700.1	53.396	427	174	7	240	647	329	749	2.94e-137	425
Msa0569210	AT1G63700.2	53.396	427	174	7	240	647	329	749	2.94e-137	425
Msa0569210	AT5G66850.2	52.210	362	153	9	238	589	286	637	2.31e-112	354

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Find 234 sgRNAs with CRISPR-Local

Find 530 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCATCGAAACTGTT+TGG	0.352188	4_1:-71079294	None:intergenic
AAAATTGTGTAAGATGGATG+AGG	0.568142	4_1:-71084850	None:intergenic
AAACATGCCCAAATGTTCCC+CGG	0.597591	4_1:-71080489	None:intergenic
AAAGCCCATACACCACCTGG+TGG	0.695625	4_1:+71084970	Msa0569210:CDS
AAAGCCTGATCGGAGTTTGT+AGG	0.550309	4_1:-71079396	None:intergenic
AAAGGAAAACTTCTTGGCCG+GGG	0.583650	4_1:+71080472	Msa0569210:CDS
AAAGGATCCCAAAGCCTGAT+CGG	0.558291	4_1:-71079406	None:intergenic
AACATATTAGTCGATCCTAA+TGG	0.484190	4_1:+71081584	Msa0569210:CDS
AACCTCTCCAAGTGGAAGAA+AGG	0.477555	4_1:+71080454	Msa0569210:CDS
AACTCCTGCCCAAAAGATTT+TGG	0.223091	4_1:+71085097	Msa0569210:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTTCATCGAAACTGTT+TGG	-	chr4_1:71079297-71079316	None:intergenic	30.0%
AATTGGATGATCATCAAAAG+AGG	-	chr4_1:71079463-71079482	None:intergenic	30.0%
TTAGGTTTATTGGAGATTTG+GGG	+	chr4_1:71079597-71079616	Msa0569210:intron	30.0%
ATTGACTAAAAACTGTGAGA+TGG	-	chr4_1:71079798-71079817	None:intergenic	30.0%
AGAATATGAAATGTTCAGTG+TGG	+	chr4_1:71079913-71079932	Msa0569210:intron	30.0%
CTACACAAATGAATAGCATT+GGG	-	chr4_1:71079968-71079987	None:intergenic	30.0%
TCTACACAAATGAATAGCAT+TGG	-	chr4_1:71079969-71079988	None:intergenic	30.0%
AATGCTATTCATTTGTGTAG+AGG	+	chr4_1:71079968-71079987	Msa0569210:intron	30.0%
TTTGAATCTTGATTCACCTA+CGG	+	chr4_1:71080315-71080334	Msa0569210:CDS	30.0%
TCATATCCTCATACATTAGA+AGG	-	chr4_1:71080681-71080700	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	71078961	71085507	71078961	ID=Msa0569210;Name=Msa0569210
chr4_1	mRNA	71078961	71085507	71078961	ID=Msa0569210-mRNA-1;Parent=Msa0569210;Name=Msa0569210-mRNA-1;_AED=0.07;_eAED=0.07;_QI=129\|1\|0.90\|1\|1\|1\|11\|490\|702
chr4_1	exon	71078961	71079508	71078961	ID=Msa0569210-mRNA-1:exon:24042;Parent=Msa0569210-mRNA-1
chr4_1	exon	71079988	71080527	71079988	ID=Msa0569210-mRNA-1:exon:24043;Parent=Msa0569210-mRNA-1
chr4_1	exon	71080880	71080967	71080880	ID=Msa0569210-mRNA-1:exon:24044;Parent=Msa0569210-mRNA-1
chr4_1	exon	71081124	71081186	71081124	ID=Msa0569210-mRNA-1:exon:24045;Parent=Msa0569210-mRNA-1
chr4_1	exon	71081320	71081480	71081320	ID=Msa0569210-mRNA-1:exon:24046;Parent=Msa0569210-mRNA-1
chr4_1	exon	71081568	71081643	71081568	ID=Msa0569210-mRNA-1:exon:24047;Parent=Msa0569210-mRNA-1
chr4_1	exon	71083431	71083490	71083431	ID=Msa0569210-mRNA-1:exon:24048;Parent=Msa0569210-mRNA-1
chr4_1	exon	71083607	71083714	71083607	ID=Msa0569210-mRNA-1:exon:24049;Parent=Msa0569210-mRNA-1
chr4_1	exon	71083808	71084032	71083808	ID=Msa0569210-mRNA-1:exon:24050;Parent=Msa0569210-mRNA-1
chr4_1	exon	71084539	71084642	71084539	ID=Msa0569210-mRNA-1:exon:24051;Parent=Msa0569210-mRNA-1
chr4_1	exon	71084753	71085507	71084753	ID=Msa0569210-mRNA-1:exon:24052;Parent=Msa0569210-mRNA-1
chr4_1	five_prime_UTR	71078961	71079089	71078961	ID=Msa0569210-mRNA-1:five_prime_utr;Parent=Msa0569210-mRNA-1
chr4_1	CDS	71079090	71079508	71079090	ID=Msa0569210-mRNA-1:cds;Parent=Msa0569210-mRNA-1
chr4_1	CDS	71079988	71080527	71079988	ID=Msa0569210-mRNA-1:cds;Parent=Msa0569210-mRNA-1
chr4_1	CDS	71080880	71080967	71080880	ID=Msa0569210-mRNA-1:cds;Parent=Msa0569210-mRNA-1
chr4_1	CDS	71081124	71081186	71081124	ID=Msa0569210-mRNA-1:cds;Parent=Msa0569210-mRNA-1
chr4_1	CDS	71081320	71081480	71081320	ID=Msa0569210-mRNA-1:cds;Parent=Msa0569210-mRNA-1
chr4_1	CDS	71081568	71081643	71081568	ID=Msa0569210-mRNA-1:cds;Parent=Msa0569210-mRNA-1
chr4_1	CDS	71083431	71083490	71083431	ID=Msa0569210-mRNA-1:cds;Parent=Msa0569210-mRNA-1
chr4_1	CDS	71083607	71083714	71083607	ID=Msa0569210-mRNA-1:cds;Parent=Msa0569210-mRNA-1
chr4_1	CDS	71083808	71084032	71083808	ID=Msa0569210-mRNA-1:cds;Parent=Msa0569210-mRNA-1
chr4_1	CDS	71084539	71084642	71084539	ID=Msa0569210-mRNA-1:cds;Parent=Msa0569210-mRNA-1
chr4_1	CDS	71084753	71085017	71084753	ID=Msa0569210-mRNA-1:cds;Parent=Msa0569210-mRNA-1
chr4_1	three_prime_UTR	71085018	71085507	71085018	ID=Msa0569210-mRNA-1:three_prime_utr;Parent=Msa0569210-mRNA-1

Gene Sequence

>Msa0569210

ATGCCGGTGTGGTGGAGTAAAAAGTCATCAAAGAACAAACAAGAGCGTAATAACATCAACAACGAAGAAGAAGATGAAGAAGAAGAACAAACACGTGGCGGTGGTGTTCTTCAATTCAATTTCATGAAATCACCGATCAACGCTATAAGAAGCAACGGTGATATTAAGAAGAAGAGCAACTGCAACAATAAGAATAAGAAGAAGCCAAACAGTTTCGATGAAGTTTTCAATCGGAATTCACCTAGGACTAGCAGGGAATTTGATGGCGGCGCCGCCACTGAAAAACAAGGAGTTCCGCTGCCGCTACCTACAAACTCCGATCAGGCTTTGGGATCCTTTTCCGTCTCTGGTTCTAGCGTCAGTTCTTCTACCTCTTTTGATGATCATCCAATTTCGCCTCATTTCATTTCTAATAATAGAGGACAAGATGAGGTGAAGTTCAATGTGAGGTCAAGAAGTCCAGGTCCTGCGTCAAGAGGACCTACCAGCCCTACATCGCCTCTTCATCCAAATGCATCAAGAGGACCTACTAGCCCTACATCACCTCTTCATCCAGCCGCGTCAAGAGGTCCTACTAGCCCTACATCACCTCTTCATCCAGCCGCGTCAAGAGGTCCTACCAGCCCTACATCTCCTCTTCATCCAAATGTGACGAGAGGACTGACTAGCCCTACATCACCTCTTCATCCAAATGCGATGAGAGGACCTACTAGCCCGACATCACCTCTTCATCCAAGGTTGCAGGGTTTGAATCTTGATTCACCTACGGGAAAGCAAGACGACGGAAAGAGTCAATGTCACCCATTGCCTCTTCCACCAGGATCTCCTACTAGTCCTTCTTCTGCTCTTTCCAACACACGGTCACCATTCGAAAACAGTAGCCCTAACCTCTCCAAGTGGAAGAAAGGAAAACTTCTTGGCCGGGGAACATTTGGGCATGTTTATCTTGGATTCAATAGTGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAGGGTTGGCTGCGACGATCAAAATTCAAAAGAGTGCCTCAAACAACTTCACCAGGAGATAGATTTGCTTAATCAGCTTTCACACCCAAATATTGTTCAATACCTCGGGAGTGAACTGGGAGACGAGTCACTTTCTGTTTATTTGGAATATGTCTCTGGTGGTTCTATCCATAAATTACTTCAGGAATATGGCCCGTTCAAGGAGCCTGTTATTCAAAATTACACCAGGCAGATTGTCTCTGGACTTGCCTATCTACATGGGAGAAATACAGTACACAGGGATATCAAAGGGGCTAACATATTAGTCGATCCTAATGGTGAAATCAAACTAGCAGACTTTGGAATGGCTAAACATATAACTTCTGCTGCCTCAATGCTTTCATTCAAAGGAAGTCCGTACTGGATGGCACCTGAGGTTGTAATGAACACAAATGGCTATAGCCTTCCGGTTGATATATGGAGCTTGGGATGCACACTTATTGAGATGGCAGCGTCAAAGCCTCCGTGGAGTCAGTATGAAGGGGTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTATAATTCCTGAGCATCTTTCAAATGATGCGAAGAATTTCATTATGTTATGTTTACAGCGGGACCCATCAGCTCGTCCAACAGCCCAACAATTACTAGAACACCCCTTCATTAGAGATCAATCAGCAACAAAAGCTGCAACCAGAGATGTTTCCTCTTACATGTTTGACGGAAGCAAAACACCGCCTGTTTTAGAGCCTAATTCCAATCGAAGAAGTATAACTTCACTTGATGGAGACTATGCAACAAAGTCATCTATTGCAGCTCCACGAACAATAAGGAGTCCAAGAGATCACTCAAGAACGATCACATCTTTACCGGTATCTCCCTCTTCAAGTCCATTGCGACAATATGGACAGGAACATAGGAGTTGTTTCTATTCTCCTCCTCATCCATCTTACACAATTTTGGGACAAAATAGTTACACCTTGAATGATACACCCTCTTATCCAGTGAGATCGAATGCACCATTTACTCTTGATCCTTGGCATGAAACATCTAGATACAAAGCCCATACACCACCTGGTGGATCACCAAGAATGCGATTCATTTGA

Protein sequence

>Msa0569210

MPVWWSKKSSKNKQERNNINNEEEDEEEEQTRGGGVLQFNFMKSPINAIRSNGDIKKKSNCNNKNKKKPNSFDEVFNRNSPRTSREFDGGAATEKQGVPLPLPTNSDQALGSFSVSGSSVSSSTSFDDHPISPHFISNNRGQDEVKFNVRSRSPGPASRGPTSPTSPLHPNASRGPTSPTSPLHPAASRGPTSPTSPLHPAASRGPTSPTSPLHPNVTRGLTSPTSPLHPNAMRGPTSPTSPLHPRLQGLNLDSPTGKQDDGKSQCHPLPLPPGSPTSPSSALSNTRSPFENSSPNLSKWKKGKLLGRGTFGHVYLGFNSENGQMCAIKEVRVGCDDQNSKECLKQLHQEIDLLNQLSHPNIVQYLGSELGDESLSVYLEYVSGGSIHKLLQEYGPFKEPVIQNYTRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHITSAASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTLIEMAASKPPWSQYEGVAAIFKIGNSKDMPIIPEHLSNDAKNFIMLCLQRDPSARPTAQQLLEHPFIRDQSATKAATRDVSSYMFDGSKTPPVLEPNSNRRSITSLDGDYATKSSIAAPRTIRSPRDHSRTITSLPVSPSSSPLRQYGQEHRSCFYSPPHPSYTILGQNSYTLNDTPSYPVRSNAPFTLDPWHETSRYKAHTPPGGSPRMRFI*