Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570690 | KEH30840.1 | 93.706 | 143 | 4 | 1 | 1 | 143 | 47 | 184 | 3.71e-92 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570690 | sp|Q6X7K0|WOX1_ARATH | 54.472 | 123 | 44 | 3 | 16 | 135 | 74 | 187 | 3.97e-35 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570690 | A0A072UYB2 | 93.706 | 143 | 4 | 1 | 1 | 143 | 47 | 184 | 1.77e-92 | 275 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0570690 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570690 | MtrunA17_Chr4g0043891 | 92.800 | 125 | 2 | 2 | 11 | 135 | 1 | 118 | 2.50e-78 | 232 |
| Msa0570690 | MtrunA17_Chr8g0392991 | 60.345 | 116 | 35 | 3 | 16 | 131 | 94 | 198 | 3.41e-37 | 130 |
| Msa0570690 | MtrunA17_Chr7g0238431 | 71.429 | 70 | 20 | 0 | 11 | 80 | 1 | 70 | 1.16e-31 | 112 |
| Msa0570690 | MtrunA17_Chr5g0436661 | 39.552 | 134 | 71 | 2 | 18 | 141 | 33 | 166 | 3.40e-28 | 102 |
| Msa0570690 | MtrunA17_Chr5g0405351 | 67.164 | 67 | 21 | 1 | 14 | 79 | 26 | 92 | 2.13e-27 | 103 |
| Msa0570690 | MtrunA17_Chr1g0153171 | 68.750 | 64 | 20 | 0 | 17 | 80 | 89 | 152 | 1.07e-26 | 100 |
| Msa0570690 | MtrunA17_Chr3g0125111 | 84.615 | 52 | 8 | 0 | 29 | 80 | 91 | 142 | 1.70e-26 | 97.4 |
| Msa0570690 | MtrunA17_Chr8g0385441 | 84.615 | 52 | 8 | 0 | 29 | 80 | 93 | 144 | 1.74e-26 | 97.4 |
| Msa0570690 | MtrunA17_Chr4g0031341 | 66.667 | 63 | 21 | 0 | 18 | 80 | 25 | 87 | 5.33e-26 | 98.6 |
| Msa0570690 | MtrunA17_Chr7g0223471 | 46.377 | 69 | 37 | 0 | 13 | 81 | 42 | 110 | 1.11e-18 | 80.9 |
| Msa0570690 | MtrunA17_Chr1g0212511 | 46.341 | 82 | 38 | 1 | 18 | 99 | 85 | 160 | 4.80e-18 | 77.8 |
| Msa0570690 | MtrunA17_Chr2g0283141 | 44.928 | 69 | 38 | 0 | 13 | 81 | 50 | 118 | 6.29e-18 | 79.0 |
| Msa0570690 | MtrunA17_Chr3g0144021 | 42.623 | 61 | 35 | 0 | 18 | 78 | 82 | 142 | 1.01e-13 | 65.5 |
| Msa0570690 | MtrunA17_Chr6g0460691 | 39.474 | 76 | 46 | 0 | 17 | 92 | 31 | 106 | 2.57e-13 | 65.5 |
| Msa0570690 | MtrunA17_Chr7g0222981 | 36.559 | 93 | 49 | 1 | 18 | 110 | 68 | 150 | 6.68e-13 | 62.8 |
| Msa0570690 | MtrunA17_Chr7g0254251 | 45.098 | 51 | 28 | 0 | 17 | 67 | 27 | 77 | 4.77e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570690 | AT3G18010.1 | 54.472 | 123 | 44 | 3 | 16 | 135 | 74 | 187 | 4.04e-36 | 127 |
| Msa0570690 | AT2G28610.1 | 65.714 | 70 | 24 | 0 | 11 | 80 | 1 | 70 | 5.52e-30 | 108 |
| Msa0570690 | AT5G59340.1 | 64.706 | 68 | 24 | 0 | 16 | 83 | 12 | 79 | 1.44e-27 | 103 |
| Msa0570690 | AT3G11260.1 | 48.421 | 95 | 39 | 1 | 18 | 102 | 24 | 118 | 9.56e-27 | 99.0 |
| Msa0570690 | AT2G17950.1 | 60.759 | 79 | 30 | 1 | 14 | 91 | 34 | 112 | 2.20e-26 | 100 |
| Msa0570690 | AT1G46480.2 | 63.768 | 69 | 24 | 1 | 12 | 80 | 85 | 152 | 3.89e-26 | 97.8 |
| Msa0570690 | AT2G01500.1 | 74.545 | 55 | 14 | 0 | 18 | 72 | 61 | 115 | 8.62e-26 | 98.6 |
| Msa0570690 | AT1G46480.1 | 63.768 | 69 | 24 | 1 | 12 | 80 | 85 | 152 | 2.02e-25 | 97.4 |
| Msa0570690 | AT5G05770.1 | 59.375 | 64 | 26 | 0 | 18 | 81 | 29 | 92 | 1.64e-23 | 89.0 |
| Msa0570690 | AT2G33880.1 | 44.286 | 70 | 39 | 0 | 13 | 82 | 50 | 119 | 1.69e-17 | 77.8 |
| Msa0570690 | AT2G33880.2 | 44.286 | 70 | 39 | 0 | 13 | 82 | 50 | 119 | 2.42e-17 | 77.4 |
| Msa0570690 | AT5G45980.1 | 44.776 | 67 | 37 | 0 | 13 | 79 | 50 | 116 | 4.15e-16 | 73.6 |
| Msa0570690 | AT4G35550.1 | 49.180 | 61 | 31 | 0 | 18 | 78 | 99 | 159 | 1.16e-15 | 72.0 |
| Msa0570690 | AT1G20700.2 | 45.000 | 60 | 33 | 0 | 18 | 77 | 33 | 92 | 3.74e-14 | 65.5 |
| Msa0570690 | AT1G20700.3 | 45.000 | 60 | 33 | 0 | 18 | 77 | 95 | 154 | 1.31e-13 | 65.5 |
| Msa0570690 | AT1G20700.1 | 45.000 | 60 | 33 | 0 | 18 | 77 | 95 | 154 | 1.45e-13 | 65.5 |
| Msa0570690 | AT3G03660.1 | 49.057 | 53 | 27 | 0 | 17 | 69 | 32 | 84 | 3.20e-13 | 65.1 |
| Msa0570690 | AT3G03660.2 | 49.057 | 53 | 27 | 0 | 17 | 69 | 32 | 84 | 5.09e-13 | 64.7 |
| Msa0570690 | AT3G03660.4 | 49.057 | 53 | 27 | 0 | 17 | 69 | 32 | 84 | 7.81e-13 | 64.3 |
| Msa0570690 | AT3G03660.3 | 49.057 | 53 | 27 | 0 | 17 | 69 | 32 | 84 | 1.02e-12 | 64.3 |
| Msa0570690 | AT5G17810.1 | 43.396 | 53 | 30 | 0 | 17 | 69 | 20 | 72 | 2.19e-11 | 60.1 |
| Msa0570690 | AT5G17810.2 | 43.396 | 53 | 30 | 0 | 17 | 69 | 20 | 72 | 2.19e-11 | 60.1 |
| Msa0570690 | AT5G17810.3 | 43.396 | 53 | 30 | 0 | 17 | 69 | 20 | 72 | 2.22e-11 | 60.1 |
Find 29 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTCTCGCCTTGTGATTC+TGG | 0.194023 | 4_1:-73010564 | None:intergenic |
| GCTTCGCAGCTTCGACAATT+TGG | 0.206061 | 4_1:+73010508 | Msa0570690:CDS |
| ATTTCTCTTGTCTTTGTTGA+TGG | 0.263889 | 4_1:+73011261 | Msa0570690:CDS |
| AGAGAAAGAGAAGTACGTTA+TGG | 0.359866 | 4_1:+73010651 | Msa0570690:CDS |
| CGACAATTTGGAAAGATTGA+AGG | 0.396848 | 4_1:+73010520 | Msa0570690:CDS |
| GAGAAAGAGAAGTACGTTAT+GGG | 0.401887 | 4_1:+73010652 | Msa0570690:CDS |
| GAAGCTGCGAAGCTATTTGT+TGG | 0.428703 | 4_1:-73010498 | None:intergenic |
| CTTGCCTATACAATTCTTCA+AGG | 0.428836 | 4_1:-73010447 | None:intergenic |
| TAGTCCTTGAAGAATTGTAT+AGG | 0.431151 | 4_1:+73010443 | Msa0570690:CDS |
| GTTGGACTCCACCTTGAACT+TGG | 0.444756 | 4_1:-73010406 | None:intergenic |
| CTTGAGATGGAGGAAACAAT+TGG | 0.464032 | 4_1:+73010604 | Msa0570690:CDS |
| TGCATCCTCAACCAAGTTCA+AGG | 0.472729 | 4_1:+73010395 | Msa0570690:CDS |
| CTCCACCTTGAACTTGGTTG+AGG | 0.502185 | 4_1:-73010400 | None:intergenic |
| TGTTGGATTTGTTCAGCTGA+TGG | 0.503667 | 4_1:-73010481 | None:intergenic |
| TTGTTCACTGCAGTTTGAAG+TGG | 0.506780 | 4_1:-73011225 | None:intergenic |
| TCAAGGACTAGTAATTGAAC+TGG | 0.509163 | 4_1:-73010430 | None:intergenic |
| GAAGCGTCGTCGCCTTGAGA+TGG | 0.530642 | 4_1:+73010591 | Msa0570690:CDS |
| ACTAGTAATTGAACTGGTGT+TGG | 0.537149 | 4_1:-73010424 | None:intergenic |
| CTTGAAGAATTGTATAGGCA+AGG | 0.540070 | 4_1:+73010448 | Msa0570690:CDS |
| TCAGAAAAGCAAGAAGCTGC+AGG | 0.540109 | 4_1:+73010679 | Msa0570690:CDS |
| CAATTGTTTCCTCCATCTCA+AGG | 0.548253 | 4_1:-73010603 | None:intergenic |
| GCGTCGTCGCCTTGAGATGG+AGG | 0.576407 | 4_1:+73010594 | Msa0570690:CDS |
| TTGAAGAATTGTATAGGCAA+GGG | 0.590766 | 4_1:+73010449 | Msa0570690:CDS |
| ACAGCTCATGCAGCTGAGCA+AGG | 0.595931 | 4_1:+73010358 | None:intergenic |
| AAACTGCAGTGAACAAGCAG+AGG | 0.632631 | 4_1:+73011232 | Msa0570690:CDS |
| AGTTAAAGAGACAAAGAAGT+GGG | 0.667079 | 4_1:+73011199 | Msa0570690:CDS |
| CTATTGGTTCCAGAATCACA+AGG | 0.685006 | 4_1:+73010555 | Msa0570690:CDS |
| GAGTTAAAGAGACAAAGAAG+TGG | 0.689037 | 4_1:+73011198 | Msa0570690:CDS |
| ATCCTCAACCAAGTTCAAGG+TGG | 0.762805 | 4_1:+73010398 | Msa0570690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTTTCTTTCAAATA+TGG | - | chr4_1:73011025-73011044 | None:intergenic | 10.0% |
| !!! | AAATTTTTTTCTTTCAAATA+TGG | - | chr4_1:73011025-73011044 | None:intergenic | 10.0% |
| !!! | TTGTTGTTTATTCAATTTAA+TGG | + | chr4_1:73011046-73011065 | Msa0570690:intron | 15.0% |
| !!! | ATTGCTATTTTTGAAATTTT+AGG | + | chr4_1:73011077-73011096 | Msa0570690:intron | 15.0% |
| !!! | TTGTTGTTTATTCAATTTAA+TGG | + | chr4_1:73011046-73011065 | Msa0570690:intron | 15.0% |
| !!! | ATTGCTATTTTTGAAATTTT+AGG | + | chr4_1:73011077-73011096 | Msa0570690:intron | 15.0% |
| !! | TCATGAGTGAAATATAATAT+AGG | - | chr4_1:73010763-73010782 | None:intergenic | 20.0% |
| !!! | AAAGATAAATAGCTTTTGTA+AGG | + | chr4_1:73010819-73010838 | Msa0570690:intron | 20.0% |
| !! | AGAAAAAAAAATGACCAAAT+GGG | - | chr4_1:73010885-73010904 | None:intergenic | 20.0% |
| !! | AAGAAAAAAAAATGACCAAA+TGG | - | chr4_1:73010886-73010905 | None:intergenic | 20.0% |
| !!! | CTAAAATCTCTAAAATTGTA+GGG | - | chr4_1:73010918-73010937 | None:intergenic | 20.0% |
| !!! | ACTATACTTTTAAAGATGTT+AGG | - | chr4_1:73011001-73011020 | None:intergenic | 20.0% |
| !! | TCATGAGTGAAATATAATAT+AGG | - | chr4_1:73010763-73010782 | None:intergenic | 20.0% |
| !!! | AAAGATAAATAGCTTTTGTA+AGG | + | chr4_1:73010819-73010838 | Msa0570690:intron | 20.0% |
| !! | AGAAAAAAAAATGACCAAAT+GGG | - | chr4_1:73010885-73010904 | None:intergenic | 20.0% |
| !! | AAGAAAAAAAAATGACCAAA+TGG | - | chr4_1:73010886-73010905 | None:intergenic | 20.0% |
| !!! | CTAAAATCTCTAAAATTGTA+GGG | - | chr4_1:73010918-73010937 | None:intergenic | 20.0% |
| !!! | ACTATACTTTTAAAGATGTT+AGG | - | chr4_1:73011001-73011020 | None:intergenic | 20.0% |
| ! | AAGGAAAAAATGTGTTCTAT+TGG | + | chr4_1:73010539-73010558 | Msa0570690:CDS | 25.0% |
| ! | TACAGCTAGATATTATCTTT+AGG | + | chr4_1:73010704-73010723 | Msa0570690:intron | 25.0% |
| ! | ACAGCTAGATATTATCTTTA+GGG | + | chr4_1:73010705-73010724 | Msa0570690:intron | 25.0% |
| !!! | ATTATCTTTAGGGTTATTCA+AGG | + | chr4_1:73010715-73010734 | Msa0570690:intron | 25.0% |
| ! | AAATATCAATTTAGCCCATT+TGG | + | chr4_1:73010868-73010887 | Msa0570690:intron | 25.0% |
| !!! | CCTAAAATCTCTAAAATTGT+AGG | - | chr4_1:73010919-73010938 | None:intergenic | 25.0% |
| !!! | CCTACAATTTTAGAGATTTT+AGG | + | chr4_1:73010916-73010935 | Msa0570690:intron | 25.0% |
| ! | TCAATATGATATTCTTGCAT+AGG | + | chr4_1:73010970-73010989 | Msa0570690:intron | 25.0% |
| !! | ATGTATATGAGTTGAATTTG+TGG | + | chr4_1:73011146-73011165 | Msa0570690:intron | 25.0% |
| ! | AAGGAAAAAATGTGTTCTAT+TGG | + | chr4_1:73010539-73010558 | Msa0570690:CDS | 25.0% |
| ! | TACAGCTAGATATTATCTTT+AGG | + | chr4_1:73010704-73010723 | Msa0570690:intron | 25.0% |
| ! | ACAGCTAGATATTATCTTTA+GGG | + | chr4_1:73010705-73010724 | Msa0570690:intron | 25.0% |
| !!! | ATTATCTTTAGGGTTATTCA+AGG | + | chr4_1:73010715-73010734 | Msa0570690:intron | 25.0% |
| ! | AAATATCAATTTAGCCCATT+TGG | + | chr4_1:73010868-73010887 | Msa0570690:intron | 25.0% |
| !!! | CCTAAAATCTCTAAAATTGT+AGG | - | chr4_1:73010919-73010938 | None:intergenic | 25.0% |
| !!! | CCTACAATTTTAGAGATTTT+AGG | + | chr4_1:73010916-73010935 | Msa0570690:intron | 25.0% |
| ! | TCAATATGATATTCTTGCAT+AGG | + | chr4_1:73010970-73010989 | Msa0570690:intron | 25.0% |
| !! | ATGTATATGAGTTGAATTTG+TGG | + | chr4_1:73011146-73011165 | Msa0570690:intron | 25.0% |
| TAGTCCTTGAAGAATTGTAT+AGG | + | chr4_1:73010443-73010462 | Msa0570690:CDS | 30.0% | |
| TTGAAGAATTGTATAGGCAA+GGG | + | chr4_1:73010449-73010468 | Msa0570690:CDS | 30.0% | |
| ! | GTTATTCAAGGTTCTTTTAG+TGG | + | chr4_1:73010727-73010746 | Msa0570690:intron | 30.0% |
| ! | AATAGCTTTTGTAAGGATCT+CGG | + | chr4_1:73010826-73010845 | Msa0570690:intron | 30.0% |
| ACACACACTTCAAATTGTAA+GGG | - | chr4_1:73011116-73011135 | None:intergenic | 30.0% | |
| AGTTAAAGAGACAAAGAAGT+GGG | + | chr4_1:73011199-73011218 | Msa0570690:CDS | 30.0% | |
| TAGTCCTTGAAGAATTGTAT+AGG | + | chr4_1:73010443-73010462 | Msa0570690:CDS | 30.0% | |
| TTGAAGAATTGTATAGGCAA+GGG | + | chr4_1:73010449-73010468 | Msa0570690:CDS | 30.0% | |
| ! | GTTATTCAAGGTTCTTTTAG+TGG | + | chr4_1:73010727-73010746 | Msa0570690:intron | 30.0% |
| ! | AATAGCTTTTGTAAGGATCT+CGG | + | chr4_1:73010826-73010845 | Msa0570690:intron | 30.0% |
| ACACACACTTCAAATTGTAA+GGG | - | chr4_1:73011116-73011135 | None:intergenic | 30.0% | |
| AGTTAAAGAGACAAAGAAGT+GGG | + | chr4_1:73011199-73011218 | Msa0570690:CDS | 30.0% | |
| ACTAGTAATTGAACTGGTGT+TGG | - | chr4_1:73010427-73010446 | None:intergenic | 35.0% | |
| ! | TCAAGGACTAGTAATTGAAC+TGG | - | chr4_1:73010433-73010452 | None:intergenic | 35.0% |
| CTTGCCTATACAATTCTTCA+AGG | - | chr4_1:73010450-73010469 | None:intergenic | 35.0% | |
| CTTGAAGAATTGTATAGGCA+AGG | + | chr4_1:73010448-73010467 | Msa0570690:CDS | 35.0% | |
| CGACAATTTGGAAAGATTGA+AGG | + | chr4_1:73010520-73010539 | Msa0570690:CDS | 35.0% | |
| ! | AGAGAAAGAGAAGTACGTTA+TGG | + | chr4_1:73010651-73010670 | Msa0570690:CDS | 35.0% |
| ! | GAGAAAGAGAAGTACGTTAT+GGG | + | chr4_1:73010652-73010671 | Msa0570690:CDS | 35.0% |
| CACACACACTTCAAATTGTA+AGG | - | chr4_1:73011117-73011136 | None:intergenic | 35.0% | |
| ! | TGAGTTGAATTTGTGGTGAT+TGG | + | chr4_1:73011153-73011172 | Msa0570690:intron | 35.0% |
| !! | GATTGGATTTTGAAAGAGAC+AGG | + | chr4_1:73011170-73011189 | Msa0570690:intron | 35.0% |
| GAGTTAAAGAGACAAAGAAG+TGG | + | chr4_1:73011198-73011217 | Msa0570690:CDS | 35.0% | |
| ACTAGTAATTGAACTGGTGT+TGG | - | chr4_1:73010427-73010446 | None:intergenic | 35.0% | |
| ! | TCAAGGACTAGTAATTGAAC+TGG | - | chr4_1:73010433-73010452 | None:intergenic | 35.0% |
| CTTGCCTATACAATTCTTCA+AGG | - | chr4_1:73010450-73010469 | None:intergenic | 35.0% | |
| CTTGAAGAATTGTATAGGCA+AGG | + | chr4_1:73010448-73010467 | Msa0570690:CDS | 35.0% | |
| CGACAATTTGGAAAGATTGA+AGG | + | chr4_1:73010520-73010539 | Msa0570690:CDS | 35.0% | |
| ! | AGAGAAAGAGAAGTACGTTA+TGG | + | chr4_1:73010651-73010670 | Msa0570690:CDS | 35.0% |
| ! | GAGAAAGAGAAGTACGTTAT+GGG | + | chr4_1:73010652-73010671 | Msa0570690:CDS | 35.0% |
| CACACACACTTCAAATTGTA+AGG | - | chr4_1:73011117-73011136 | None:intergenic | 35.0% | |
| ! | TGAGTTGAATTTGTGGTGAT+TGG | + | chr4_1:73011153-73011172 | Msa0570690:intron | 35.0% |
| !! | GATTGGATTTTGAAAGAGAC+AGG | + | chr4_1:73011170-73011189 | Msa0570690:intron | 35.0% |
| GAGTTAAAGAGACAAAGAAG+TGG | + | chr4_1:73011198-73011217 | Msa0570690:CDS | 35.0% | |
| ! | TGTTGGATTTGTTCAGCTGA+TGG | - | chr4_1:73010484-73010503 | None:intergenic | 40.0% |
| !! | CTATTGGTTCCAGAATCACA+AGG | + | chr4_1:73010555-73010574 | Msa0570690:CDS | 40.0% |
| CAATTGTTTCCTCCATCTCA+AGG | - | chr4_1:73010606-73010625 | None:intergenic | 40.0% | |
| CTTGAGATGGAGGAAACAAT+TGG | + | chr4_1:73010604-73010623 | Msa0570690:CDS | 40.0% | |
| !! | TGGATTTTGAAAGAGACAGG+TGG | + | chr4_1:73011173-73011192 | Msa0570690:intron | 40.0% |
| !! | ATTTTGAAAGAGACAGGTGG+TGG | + | chr4_1:73011176-73011195 | Msa0570690:intron | 40.0% |
| TTGTTCACTGCAGTTTGAAG+TGG | - | chr4_1:73011228-73011247 | None:intergenic | 40.0% | |
| ! | TGTTGGATTTGTTCAGCTGA+TGG | - | chr4_1:73010484-73010503 | None:intergenic | 40.0% |
| !! | CTATTGGTTCCAGAATCACA+AGG | + | chr4_1:73010555-73010574 | Msa0570690:CDS | 40.0% |
| CAATTGTTTCCTCCATCTCA+AGG | - | chr4_1:73010606-73010625 | None:intergenic | 40.0% | |
| CTTGAGATGGAGGAAACAAT+TGG | + | chr4_1:73010604-73010623 | Msa0570690:CDS | 40.0% | |
| !! | TGGATTTTGAAAGAGACAGG+TGG | + | chr4_1:73011173-73011192 | Msa0570690:intron | 40.0% |
| !! | ATTTTGAAAGAGACAGGTGG+TGG | + | chr4_1:73011176-73011195 | Msa0570690:intron | 40.0% |
| TTGTTCACTGCAGTTTGAAG+TGG | - | chr4_1:73011228-73011247 | None:intergenic | 40.0% | |
| TGCATCCTCAACCAAGTTCA+AGG | + | chr4_1:73010395-73010414 | Msa0570690:CDS | 45.0% | |
| ATCCTCAACCAAGTTCAAGG+TGG | + | chr4_1:73010398-73010417 | Msa0570690:CDS | 45.0% | |
| GAAGCTGCGAAGCTATTTGT+TGG | - | chr4_1:73010501-73010520 | None:intergenic | 45.0% | |
| TCAGAAAAGCAAGAAGCTGC+AGG | + | chr4_1:73010679-73010698 | Msa0570690:CDS | 45.0% | |
| AAACTGCAGTGAACAAGCAG+AGG | + | chr4_1:73011232-73011251 | Msa0570690:CDS | 45.0% | |
| TGCATCCTCAACCAAGTTCA+AGG | + | chr4_1:73010395-73010414 | Msa0570690:CDS | 45.0% | |
| ATCCTCAACCAAGTTCAAGG+TGG | + | chr4_1:73010398-73010417 | Msa0570690:CDS | 45.0% | |
| GAAGCTGCGAAGCTATTTGT+TGG | - | chr4_1:73010501-73010520 | None:intergenic | 45.0% | |
| TCAGAAAAGCAAGAAGCTGC+AGG | + | chr4_1:73010679-73010698 | Msa0570690:CDS | 45.0% | |
| AAACTGCAGTGAACAAGCAG+AGG | + | chr4_1:73011232-73011251 | Msa0570690:CDS | 45.0% | |
| CTCCACCTTGAACTTGGTTG+AGG | - | chr4_1:73010403-73010422 | None:intergenic | 50.0% | |
| GTTGGACTCCACCTTGAACT+TGG | - | chr4_1:73010409-73010428 | None:intergenic | 50.0% | |
| GCTTCGCAGCTTCGACAATT+TGG | + | chr4_1:73010508-73010527 | Msa0570690:CDS | 50.0% | |
| CTCCACCTTGAACTTGGTTG+AGG | - | chr4_1:73010403-73010422 | None:intergenic | 50.0% | |
| GTTGGACTCCACCTTGAACT+TGG | - | chr4_1:73010409-73010428 | None:intergenic | 50.0% | |
| GCTTCGCAGCTTCGACAATT+TGG | + | chr4_1:73010508-73010527 | Msa0570690:CDS | 50.0% | |
| GCTCTCTCGCCTTGTGATTC+TGG | - | chr4_1:73010567-73010586 | None:intergenic | 55.0% | |
| GCTCTCTCGCCTTGTGATTC+TGG | - | chr4_1:73010567-73010586 | None:intergenic | 55.0% | |
| !! | GAAGCGTCGTCGCCTTGAGA+TGG | + | chr4_1:73010591-73010610 | Msa0570690:CDS | 60.0% |
| !! | GAAGCGTCGTCGCCTTGAGA+TGG | + | chr4_1:73010591-73010610 | Msa0570690:CDS | 60.0% |
| GCGTCGTCGCCTTGAGATGG+AGG | + | chr4_1:73010594-73010613 | Msa0570690:CDS | 65.0% | |
| GCGTCGTCGCCTTGAGATGG+AGG | + | chr4_1:73010594-73010613 | Msa0570690:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 73010364 | 73011280 | 73010364 | ID=Msa0570690;Name=Msa0570690 |
| chr4_1 | mRNA | 73010364 | 73011280 | 73010364 | ID=Msa0570690-mRNA-1;Parent=Msa0570690;Name=Msa0570690-mRNA-1;_AED=0.15;_eAED=0.18;_QI=0|0|0|1|1|1|2|0|143 |
| chr4_1 | exon | 73010364 | 73010700 | 73010364 | ID=Msa0570690-mRNA-1:exon:24999;Parent=Msa0570690-mRNA-1 |
| chr4_1 | exon | 73011186 | 73011280 | 73011186 | ID=Msa0570690-mRNA-1:exon:25000;Parent=Msa0570690-mRNA-1 |
| chr4_1 | CDS | 73010364 | 73010700 | 73010364 | ID=Msa0570690-mRNA-1:cds;Parent=Msa0570690-mRNA-1 |
| chr4_1 | CDS | 73011186 | 73011280 | 73011186 | ID=Msa0570690-mRNA-1:cds;Parent=Msa0570690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
