AlfalfaGEDB | Msa0570690

M. sativa cultivar zhongmu-4 / Msa0570690

KEGG: -
GO: GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0570690	KEH30840.1	93.706	143	4	1	1	143	47	184	3.71e-92	275

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0570690	sp\|Q6X7K0\|WOX1_ARATH	54.472	123	44	3	16	135	74	187	3.97e-35	127

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0570690	A0A072UYB2	93.706	143	4	1	1	143	47	184	1.77e-92	275

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0570690	TF	HB-WOX

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0570690	MtrunA17_Chr4g0043891	92.800	125	2	2	11	135	1	118	2.50e-78	232
Msa0570690	MtrunA17_Chr8g0392991	60.345	116	35	3	16	131	94	198	3.41e-37	130
Msa0570690	MtrunA17_Chr7g0238431	71.429	70	20	0	11	80	1	70	1.16e-31	112
Msa0570690	MtrunA17_Chr5g0436661	39.552	134	71	2	18	141	33	166	3.40e-28	102
Msa0570690	MtrunA17_Chr5g0405351	67.164	67	21	1	14	79	26	92	2.13e-27	103
Msa0570690	MtrunA17_Chr1g0153171	68.750	64	20	0	17	80	89	152	1.07e-26	100
Msa0570690	MtrunA17_Chr3g0125111	84.615	52	8	0	29	80	91	142	1.70e-26	97.4
Msa0570690	MtrunA17_Chr8g0385441	84.615	52	8	0	29	80	93	144	1.74e-26	97.4
Msa0570690	MtrunA17_Chr4g0031341	66.667	63	21	0	18	80	25	87	5.33e-26	98.6
Msa0570690	MtrunA17_Chr7g0223471	46.377	69	37	0	13	81	42	110	1.11e-18	80.9

Showing 1 to 10 of 16 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0570690	AT3G18010.1	54.472	123	44	3	16	135	74	187	4.04e-36	127
Msa0570690	AT2G28610.1	65.714	70	24	0	11	80	1	70	5.52e-30	108
Msa0570690	AT5G59340.1	64.706	68	24	0	16	83	12	79	1.44e-27	103
Msa0570690	AT3G11260.1	48.421	95	39	1	18	102	24	118	9.56e-27	99.0
Msa0570690	AT2G17950.1	60.759	79	30	1	14	91	34	112	2.20e-26	100
Msa0570690	AT1G46480.2	63.768	69	24	1	12	80	85	152	3.89e-26	97.8
Msa0570690	AT2G01500.1	74.545	55	14	0	18	72	61	115	8.62e-26	98.6
Msa0570690	AT1G46480.1	63.768	69	24	1	12	80	85	152	2.02e-25	97.4
Msa0570690	AT5G05770.1	59.375	64	26	0	18	81	29	92	1.64e-23	89.0
Msa0570690	AT2G33880.1	44.286	70	39	0	13	82	50	119	1.69e-17	77.8

Showing 1 to 10 of 23 entries

Previous1 2 3Next

Find 29 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGCAGTGAACAAGCAG+AGG	0.632631	4_1:+73011232	Msa0570690:CDS
ACAGCTCATGCAGCTGAGCA+AGG	0.595931	4_1:+73010358	None:intergenic
ACTAGTAATTGAACTGGTGT+TGG	0.537149	4_1:-73010424	None:intergenic
AGAGAAAGAGAAGTACGTTA+TGG	0.359866	4_1:+73010651	Msa0570690:CDS
AGTTAAAGAGACAAAGAAGT+GGG	0.667079	4_1:+73011199	Msa0570690:CDS
ATCCTCAACCAAGTTCAAGG+TGG	0.762805	4_1:+73010398	Msa0570690:CDS
ATTTCTCTTGTCTTTGTTGA+TGG	0.263889	4_1:+73011261	Msa0570690:CDS
CAATTGTTTCCTCCATCTCA+AGG	0.548253	4_1:-73010603	None:intergenic
CGACAATTTGGAAAGATTGA+AGG	0.396848	4_1:+73010520	Msa0570690:CDS
CTATTGGTTCCAGAATCACA+AGG	0.685006	4_1:+73010555	Msa0570690:CDS

Showing 1 to 10 of 29 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TAGTCCTTGAAGAATTGTAT+AGG	+	chr4_1:73010443-73010462	Msa0570690:CDS	30.0%
TTGAAGAATTGTATAGGCAA+GGG	+	chr4_1:73010449-73010468	Msa0570690:CDS	30.0%
ACACACACTTCAAATTGTAA+GGG	-	chr4_1:73011116-73011135	None:intergenic	30.0%
AGTTAAAGAGACAAAGAAGT+GGG	+	chr4_1:73011199-73011218	Msa0570690:CDS	30.0%
TAGTCCTTGAAGAATTGTAT+AGG	+	chr4_1:73010443-73010462	Msa0570690:CDS	30.0%
TTGAAGAATTGTATAGGCAA+GGG	+	chr4_1:73010449-73010468	Msa0570690:CDS	30.0%
ACACACACTTCAAATTGTAA+GGG	-	chr4_1:73011116-73011135	None:intergenic	30.0%
AGTTAAAGAGACAAAGAAGT+GGG	+	chr4_1:73011199-73011218	Msa0570690:CDS	30.0%
ACTAGTAATTGAACTGGTGT+TGG	-	chr4_1:73010427-73010446	None:intergenic	35.0%
CTTGCCTATACAATTCTTCA+AGG	-	chr4_1:73010450-73010469	None:intergenic	35.0%

Showing 1 to 10 of 106 entries

Previous1 2 3 4 5…11Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	73010364	73011280	73010364	ID=Msa0570690;Name=Msa0570690
chr4_1	mRNA	73010364	73011280	73010364	ID=Msa0570690-mRNA-1;Parent=Msa0570690;Name=Msa0570690-mRNA-1;_AED=0.15;_eAED=0.18;_QI=0\|0\|0\|1\|1\|1\|2\|0\|143
chr4_1	exon	73010364	73010700	73010364	ID=Msa0570690-mRNA-1:exon:24999;Parent=Msa0570690-mRNA-1
chr4_1	exon	73011186	73011280	73011186	ID=Msa0570690-mRNA-1:exon:25000;Parent=Msa0570690-mRNA-1
chr4_1	CDS	73010364	73010700	73010364	ID=Msa0570690-mRNA-1:cds;Parent=Msa0570690-mRNA-1
chr4_1	CDS	73011186	73011280	73011186	ID=Msa0570690-mRNA-1:cds;Parent=Msa0570690-mRNA-1

Gene Sequence

>Msa0570690

CATGCAGCTGAGCAAGGTACAAGCAATACTATGCATCCTCAACCAAGTTCAAGGTGGAGTCCAACACCAGTTCAATTACTAGTCCTTGAAGAATTGTATAGGCAAGGGATGAAAACACCATCAGCTGAACAAATCCAACAAATAGCTTCGCAGCTTCGACAATTTGGAAAGATTGAAGGAAAAAATGTGTTCTATTGGTTCCAGAATCACAAGGCGAGAGAGCGACAGAAGCGTCGTCGCCTTGAGATGGAGGAAACAATTGGTTCTTCTTCAACTGAAGATAAAAAAGAGAAAGAGAAGTACGTTATGGGAAATTCAGAAAAGCAAGAAGCTGCAGAGACAGGTGGTGGAGTTAAAGAGACAAAGAAGTGGGCAACCACTTCAAACTGCAGTGAACAAGCAGAGGTCTGTAATTTCTCTTGTCTTTGTTGA

Protein sequence

>Msa0570690

HAAEQGTSNTMHPQPSSRWSPTPVQLLVLEELYRQGMKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRLEMEETIGSSSTEDKKEKEKYVMGNSEKQEAAETGGGVKETKKWATTSNCSEQAEVCNFSCLC*