Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571260 | KEH21040.1 | 98.578 | 211 | 3 | 0 | 4 | 214 | 1 | 211 | 8.43e-152 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571260 | sp|Q500W4|PLI2C_ARATH | 54.460 | 213 | 88 | 3 | 5 | 213 | 3 | 210 | 3.02e-78 | 236 |
| Msa0571260 | sp|Q500W4|PLI2C_ARATH | 53.425 | 73 | 34 | 0 | 96 | 168 | 2 | 74 | 1.54e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571260 | A0A072U5A9 | 98.578 | 211 | 3 | 0 | 4 | 214 | 1 | 211 | 4.03e-152 | 429 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0571260 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571260 | MtrunA17_Chr8g0386501 | 98.578 | 211 | 3 | 0 | 4 | 214 | 1 | 211 | 7.76e-156 | 429 |
| Msa0571260 | MtrunA17_Chr3g0113051 | 60.109 | 183 | 65 | 1 | 4 | 178 | 1 | 183 | 5.98e-76 | 227 |
| Msa0571260 | MtrunA17_Chr8g0349391 | 59.538 | 173 | 68 | 1 | 4 | 174 | 1 | 173 | 8.07e-74 | 222 |
| Msa0571260 | MtrunA17_Chr8g0349391 | 41.429 | 70 | 41 | 0 | 2 | 71 | 93 | 162 | 7.53e-15 | 70.5 |
| Msa0571260 | MtrunA17_Chr7g0247111 | 53.302 | 212 | 95 | 2 | 4 | 211 | 1 | 212 | 3.72e-73 | 220 |
| Msa0571260 | MtrunA17_Chr7g0247111 | 44.286 | 70 | 39 | 0 | 2 | 71 | 95 | 164 | 1.11e-14 | 70.1 |
| Msa0571260 | MtrunA17_Chr1g0152431 | 55.367 | 177 | 67 | 4 | 4 | 170 | 1 | 175 | 8.62e-62 | 191 |
| Msa0571260 | MtrunA17_Chr4g0059371 | 52.000 | 175 | 77 | 2 | 5 | 172 | 3 | 177 | 2.41e-61 | 189 |
| Msa0571260 | MtrunA17_Chr4g0059371 | 50.704 | 71 | 35 | 0 | 96 | 166 | 2 | 72 | 3.37e-18 | 78.6 |
| Msa0571260 | MtrunA17_Chr4g0059371 | 43.478 | 69 | 39 | 0 | 2 | 70 | 99 | 167 | 5.77e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571260 | AT3G61230.1 | 54.460 | 213 | 88 | 3 | 5 | 213 | 3 | 210 | 3.07e-79 | 236 |
| Msa0571260 | AT3G61230.1 | 53.425 | 73 | 34 | 0 | 96 | 168 | 2 | 74 | 1.57e-21 | 88.6 |
| Msa0571260 | AT2G45800.1 | 55.288 | 208 | 89 | 2 | 4 | 207 | 1 | 208 | 7.37e-78 | 233 |
| Msa0571260 | AT2G39900.1 | 60.989 | 182 | 64 | 2 | 4 | 178 | 1 | 182 | 7.71e-77 | 229 |
| Msa0571260 | AT3G55770.3 | 57.789 | 199 | 78 | 2 | 4 | 196 | 1 | 199 | 1.79e-75 | 226 |
| Msa0571260 | AT3G55770.5 | 57.789 | 199 | 78 | 2 | 4 | 196 | 1 | 199 | 1.79e-75 | 226 |
| Msa0571260 | AT3G55770.2 | 57.789 | 199 | 78 | 2 | 4 | 196 | 1 | 199 | 1.79e-75 | 226 |
| Msa0571260 | AT3G55770.1 | 57.789 | 199 | 78 | 2 | 4 | 196 | 1 | 199 | 1.79e-75 | 226 |
| Msa0571260 | AT1G01780.1 | 53.659 | 205 | 88 | 2 | 4 | 206 | 1 | 200 | 3.42e-74 | 223 |
| Msa0571260 | AT1G01780.1 | 45.714 | 70 | 38 | 0 | 2 | 71 | 93 | 162 | 1.50e-14 | 69.7 |
| Msa0571260 | AT3G55770.7 | 49.356 | 233 | 78 | 3 | 4 | 196 | 1 | 233 | 5.98e-68 | 208 |
| Msa0571260 | AT1G10200.1 | 54.802 | 177 | 68 | 4 | 4 | 170 | 1 | 175 | 9.72e-62 | 191 |
| Msa0571260 | AT1G10200.1 | 42.857 | 70 | 40 | 0 | 2 | 71 | 99 | 168 | 2.06e-14 | 69.3 |
| Msa0571260 | AT2G45800.2 | 53.012 | 166 | 74 | 2 | 46 | 207 | 12 | 177 | 1.95e-53 | 170 |
| Msa0571260 | AT2G45800.2 | 48.438 | 64 | 33 | 0 | 6 | 69 | 68 | 131 | 5.86e-15 | 70.9 |
| Msa0571260 | AT3G55770.4 | 54.688 | 128 | 52 | 2 | 4 | 125 | 1 | 128 | 6.58e-42 | 139 |
| Msa0571260 | AT3G55770.4 | 46.392 | 97 | 41 | 1 | 98 | 194 | 3 | 88 | 3.25e-23 | 91.3 |
| Msa0571260 | AT3G55770.6 | 54.918 | 122 | 49 | 2 | 4 | 119 | 1 | 122 | 5.37e-39 | 131 |
| Msa0571260 | AT3G55770.6 | 46.392 | 97 | 41 | 1 | 98 | 194 | 3 | 88 | 2.05e-23 | 91.7 |
| Msa0571260 | AT1G10200.2 | 51.515 | 132 | 52 | 4 | 49 | 170 | 4 | 133 | 6.69e-38 | 129 |
| Msa0571260 | AT1G10200.2 | 42.857 | 70 | 40 | 0 | 2 | 71 | 57 | 126 | 3.71e-15 | 70.1 |
Find 48 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCTATGCTGCTCTTGA+TGG | 0.220465 | 4_1:-73837670 | Msa0571260:CDS |
| ATTACCCGTCTGGGGTTTCT+TGG | 0.260267 | 4_1:+73838418 | None:intergenic |
| AAACTTTCTGCTTTCTTCTC+AGG | 0.328680 | 4_1:-73838135 | Msa0571260:CDS |
| TTTACCACAAGTCATGCTTT+AGG | 0.384129 | 4_1:-73837723 | Msa0571260:CDS |
| CACAAGCCTTGCATTTCTGT+TGG | 0.387121 | 4_1:+73839098 | None:intergenic |
| AAAGGATCTTATTACCCGTC+TGG | 0.392398 | 4_1:+73838408 | None:intergenic |
| ACAAGCCTTGCATTTCTGTT+GGG | 0.412168 | 4_1:+73839099 | None:intergenic |
| TCTGTCTCTGTGTCTGATGC+TGG | 0.438805 | 4_1:+73837514 | None:intergenic |
| TCTCAGTTGTTTAAGGCAAA+AGG | 0.442224 | 4_1:-73837622 | Msa0571260:CDS |
| AAGGATCTTATTACCCGTCT+GGG | 0.445643 | 4_1:+73838409 | None:intergenic |
| ACCCGTCTGGGGTTTCTTGG+TGG | 0.448649 | 4_1:+73838421 | None:intergenic |
| AGAAAGCAGAAAGTTTGCTT+GGG | 0.452697 | 4_1:+73838142 | None:intergenic |
| GAAAGTTTGCTTGGGGCCCT+AGG | 0.452962 | 4_1:+73838150 | None:intergenic |
| TTGATAACCATGTCTTTCAC+TGG | 0.453424 | 4_1:-73839124 | Msa0571260:CDS |
| AGCAGGAAAGCCTAGTGAAC+TGG | 0.468952 | 4_1:-73838283 | Msa0571260:intron |
| AACTTTCTGCTTTCTTCTCA+GGG | 0.473345 | 4_1:-73838134 | Msa0571260:CDS |
| CTGGGGTTTCTTGGTGGCGA+AGG | 0.475484 | 4_1:+73838427 | None:intergenic |
| CAAGAAAACTGTATATCCAT+TGG | 0.479463 | 4_1:-73838088 | Msa0571260:CDS |
| AAGAAAGCAGAAAGTTTGCT+TGG | 0.480734 | 4_1:+73838141 | None:intergenic |
| AACTGTATATCCATTGGAAA+AGG | 0.494668 | 4_1:-73838082 | Msa0571260:intron |
| TCAAGAGCAGCATAGGATGA+AGG | 0.519729 | 4_1:+73837673 | None:intergenic |
| TACACCTCTTGTGTAACAGC+AGG | 0.527623 | 4_1:+73837472 | None:intergenic |
| GAATCCATCAAGAGCAGCAT+AGG | 0.537698 | 4_1:+73837666 | None:intergenic |
| CTTAAACAACTGAGAAAAGT+GGG | 0.541067 | 4_1:+73837630 | None:intergenic |
| AGAATACACACCAGTTCACT+AGG | 0.547764 | 4_1:+73838273 | None:intergenic |
| CCTTAAACAACTGAGAAAAG+TGG | 0.548044 | 4_1:+73837629 | None:intergenic |
| GTTGATACATTATCTGCTGA+TGG | 0.560388 | 4_1:-73839058 | Msa0571260:CDS |
| CAAGAGCAGCATAGGATGAA+GGG | 0.580724 | 4_1:+73837674 | None:intergenic |
| TTGTGATAAAACTGTTCACT+TGG | 0.580761 | 4_1:-73839080 | Msa0571260:CDS |
| AGACCCTGCTGTTACACAAG+AGG | 0.603788 | 4_1:-73837476 | Msa0571260:CDS |
| AGACACAGAGACAGAGACAA+AGG | 0.606794 | 4_1:-73837506 | Msa0571260:CDS |
| AGTAACTATCAATCAATCGA+AGG | 0.610154 | 4_1:-73838494 | Msa0571260:CDS |
| TTCAGATGTAATCAATGCAA+CGG | 0.613646 | 4_1:-73839013 | Msa0571260:CDS |
| GCCACCAAGAAACCCCAGAC+GGG | 0.616220 | 4_1:-73838422 | Msa0571260:intron |
| CGCCACCAAGAAACCCCAGA+CGG | 0.618954 | 4_1:-73838423 | Msa0571260:CDS |
| TTATGATAGTTGACAGTGGA+AGG | 0.619707 | 4_1:-73837751 | Msa0571260:intron |
| TCAATGCAACGGCCTTCTCG+CGG | 0.630851 | 4_1:-73839002 | Msa0571260:intron |
| AGGATCTTATTACCCGTCTG+GGG | 0.640198 | 4_1:+73838410 | None:intergenic |
| TCATGCTTTAGGTGTACACA+TGG | 0.640585 | 4_1:-73837712 | Msa0571260:CDS |
| ACACCTCTTGTGTAACAGCA+GGG | 0.640717 | 4_1:+73837473 | None:intergenic |
| TGTATGTATATACCGCGAGA+AGG | 0.642991 | 4_1:+73838990 | None:intergenic |
| GAAAGCAGAAAGTTTGCTTG+GGG | 0.651424 | 4_1:+73838143 | None:intergenic |
| TGGAACCCAACAGAAATGCA+AGG | 0.666590 | 4_1:-73839104 | Msa0571260:CDS |
| CTGTTTATGATAGTTGACAG+TGG | 0.689682 | 4_1:-73837755 | Msa0571260:intron |
| TTGGGTTCCAGTGAAAGACA+TGG | 0.695332 | 4_1:+73839117 | None:intergenic |
| TTAAACAACTGAGAAAAGTG+GGG | 0.699444 | 4_1:+73837631 | None:intergenic |
| TGCTTTAGGTGTACACATGG+AGG | 0.707932 | 4_1:-73837709 | Msa0571260:CDS |
| TACACCTAAAGCATGACTTG+TGG | 0.765155 | 4_1:+73837719 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCTATGTTTAATTTTTT+TGG | - | chr4_1:73837828-73837847 | Msa0571260:intron | 10.0% |
| !! | ATCATTAATAATAACATAAA+TGG | - | chr4_1:73838058-73838077 | Msa0571260:intron | 10.0% |
| !!! | ATAGAAAGTATATAAAAAAA+AGG | + | chr4_1:73838208-73838227 | None:intergenic | 10.0% |
| !! | CTATTTCAAATTATAATAAT+AGG | - | chr4_1:73838224-73838243 | Msa0571260:intron | 10.0% |
| !!! | TTATCTATGTTTAATTTTTT+TGG | - | chr4_1:73837828-73837847 | Msa0571260:intron | 10.0% |
| !! | ATCATTAATAATAACATAAA+TGG | - | chr4_1:73838058-73838077 | Msa0571260:intron | 10.0% |
| !!! | ATAGAAAGTATATAAAAAAA+AGG | + | chr4_1:73838208-73838227 | None:intergenic | 10.0% |
| !! | CTATTTCAAATTATAATAAT+AGG | - | chr4_1:73838224-73838243 | Msa0571260:intron | 10.0% |
| !!! | CATAGATAACTATTTTTTAA+CGG | + | chr4_1:73837817-73837836 | None:intergenic | 15.0% |
| !!! | ATTTTTACAAGTAAAAGTTT+AGG | + | chr4_1:73838017-73838036 | None:intergenic | 15.0% |
| !! | TTTCAAATTATAATAATAGG+AGG | - | chr4_1:73838227-73838246 | Msa0571260:intron | 15.0% |
| !! | ATATATATGATCAGAAAAAA+GGG | + | chr4_1:73838628-73838647 | None:intergenic | 15.0% |
| !! | TATATATATGATCAGAAAAA+AGG | + | chr4_1:73838629-73838648 | None:intergenic | 15.0% |
| !!! | CATAGATAACTATTTTTTAA+CGG | + | chr4_1:73837817-73837836 | None:intergenic | 15.0% |
| !!! | ATTTTTACAAGTAAAAGTTT+AGG | + | chr4_1:73838017-73838036 | None:intergenic | 15.0% |
| !! | TTTCAAATTATAATAATAGG+AGG | - | chr4_1:73838227-73838246 | Msa0571260:intron | 15.0% |
| !! | ATATATATGATCAGAAAAAA+GGG | + | chr4_1:73838628-73838647 | None:intergenic | 15.0% |
| !! | TATATATATGATCAGAAAAA+AGG | + | chr4_1:73838629-73838648 | None:intergenic | 15.0% |
| !! | TAAAACCAGAAAACAAATTA+AGG | + | chr4_1:73837633-73837652 | None:intergenic | 20.0% |
| !! | ACAAATCATTATCTTTATCT+TGG | - | chr4_1:73837880-73837899 | Msa0571260:intron | 20.0% |
| !!! | ATTGGAAAAGGTATATATTT+GGG | - | chr4_1:73838525-73838544 | Msa0571260:intron | 20.0% |
| !! | ACATTTCTGATATTTAATTG+TGG | - | chr4_1:73838813-73838832 | Msa0571260:intron | 20.0% |
| !! | TAAAACCAGAAAACAAATTA+AGG | + | chr4_1:73837633-73837652 | None:intergenic | 20.0% |
| !! | ACAAATCATTATCTTTATCT+TGG | - | chr4_1:73837880-73837899 | Msa0571260:intron | 20.0% |
| !!! | ATTGGAAAAGGTATATATTT+GGG | - | chr4_1:73838525-73838544 | Msa0571260:intron | 20.0% |
| !! | ACATTTCTGATATTTAATTG+TGG | - | chr4_1:73838813-73838832 | Msa0571260:intron | 20.0% |
| !!! | ACATACCTTAATTTGTTTTC+TGG | - | chr4_1:73837625-73837644 | Msa0571260:CDS | 25.0% |
| ! | TATATATAGCACATAAACGA+GGG | + | chr4_1:73837677-73837696 | None:intergenic | 25.0% |
| ! | ATATATATAGCACATAAACG+AGG | + | chr4_1:73837678-73837697 | None:intergenic | 25.0% |
| ! | TGTGCTATATATATCAAAGA+TGG | - | chr4_1:73837684-73837703 | Msa0571260:CDS | 25.0% |
| ! | GTGCTATATATATCAAAGAT+GGG | - | chr4_1:73837685-73837704 | Msa0571260:CDS | 25.0% |
| !! | TCTCAATGATTTTCTTAAGA+AGG | - | chr4_1:73837919-73837938 | Msa0571260:intron | 25.0% |
| ! | TTGCATAATCTTAAATGACA+CGG | - | chr4_1:73837945-73837964 | Msa0571260:intron | 25.0% |
| !! | GACAATTTAAGTACTTTTCT+AGG | - | chr4_1:73837974-73837993 | Msa0571260:intron | 25.0% |
| !! | CAAATATATACCTTTTCCAA+TGG | + | chr4_1:73838526-73838545 | None:intergenic | 25.0% |
| !! | CATTGGAAAAGGTATATATT+TGG | - | chr4_1:73838524-73838543 | Msa0571260:intron | 25.0% |
| ! | ACTATATAATCAAACAATGC+TGG | - | chr4_1:73838585-73838604 | Msa0571260:intron | 25.0% |
| ! | CATATATATATACACAATGC+TGG | - | chr4_1:73838639-73838658 | Msa0571260:intron | 25.0% |
| ! | TAATCTAAACACACTGAAAA+CGG | + | chr4_1:73838715-73838734 | None:intergenic | 25.0% |
| !! | AGACATTGTGACATTTTATA+CGG | + | chr4_1:73838768-73838787 | None:intergenic | 25.0% |
| !!! | ACATACCTTAATTTGTTTTC+TGG | - | chr4_1:73837625-73837644 | Msa0571260:CDS | 25.0% |
| ! | TATATATAGCACATAAACGA+GGG | + | chr4_1:73837677-73837696 | None:intergenic | 25.0% |
| ! | ATATATATAGCACATAAACG+AGG | + | chr4_1:73837678-73837697 | None:intergenic | 25.0% |
| ! | TGTGCTATATATATCAAAGA+TGG | - | chr4_1:73837684-73837703 | Msa0571260:CDS | 25.0% |
| ! | GTGCTATATATATCAAAGAT+GGG | - | chr4_1:73837685-73837704 | Msa0571260:CDS | 25.0% |
| !! | TCTCAATGATTTTCTTAAGA+AGG | - | chr4_1:73837919-73837938 | Msa0571260:intron | 25.0% |
| ! | TTGCATAATCTTAAATGACA+CGG | - | chr4_1:73837945-73837964 | Msa0571260:intron | 25.0% |
| !! | GACAATTTAAGTACTTTTCT+AGG | - | chr4_1:73837974-73837993 | Msa0571260:intron | 25.0% |
| !! | CAAATATATACCTTTTCCAA+TGG | + | chr4_1:73838526-73838545 | None:intergenic | 25.0% |
| !! | CATTGGAAAAGGTATATATT+TGG | - | chr4_1:73838524-73838543 | Msa0571260:intron | 25.0% |
| ! | ACTATATAATCAAACAATGC+TGG | - | chr4_1:73838585-73838604 | Msa0571260:intron | 25.0% |
| ! | CATATATATATACACAATGC+TGG | - | chr4_1:73838639-73838658 | Msa0571260:intron | 25.0% |
| ! | TAATCTAAACACACTGAAAA+CGG | + | chr4_1:73838715-73838734 | None:intergenic | 25.0% |
| !! | AGACATTGTGACATTTTATA+CGG | + | chr4_1:73838768-73838787 | None:intergenic | 25.0% |
| TTGTGATAAAACTGTTCACT+TGG | - | chr4_1:73837515-73837534 | Msa0571260:CDS | 30.0% | |
| TTCAGATGTAATCAATGCAA+CGG | - | chr4_1:73837582-73837601 | Msa0571260:CDS | 30.0% | |
| TTGATGAAACACGAAATGAT+AGG | - | chr4_1:73837743-73837762 | Msa0571260:CDS | 30.0% | |
| TGATGAAACACGAAATGATA+GGG | - | chr4_1:73837744-73837763 | Msa0571260:CDS | 30.0% | |
| TGCATAATCTTAAATGACAC+GGG | - | chr4_1:73837946-73837965 | Msa0571260:intron | 30.0% | |
| ! | TTTAGGTGAGTTGAATATGT+TGG | + | chr4_1:73838000-73838019 | None:intergenic | 30.0% |
| AGTAACTATCAATCAATCGA+AGG | - | chr4_1:73838101-73838120 | Msa0571260:CDS | 30.0% | |
| ! | TTTCATGATTTTCAAACAGC+AGG | - | chr4_1:73838295-73838314 | Msa0571260:intron | 30.0% |
| TTTCATATGTTTACAGCCTA+GGG | - | chr4_1:73838429-73838448 | Msa0571260:CDS | 30.0% | |
| CAAGAAAACTGTATATCCAT+TGG | - | chr4_1:73838507-73838526 | Msa0571260:intron | 30.0% | |
| AACTGTATATCCATTGGAAA+AGG | - | chr4_1:73838513-73838532 | Msa0571260:intron | 30.0% | |
| TATATACACAATGCTGGATT+TGG | - | chr4_1:73838645-73838664 | Msa0571260:intron | 30.0% | |
| !!! | TTTTATACGGTATCGGTATA+AGG | + | chr4_1:73838687-73838706 | None:intergenic | 30.0% |
| AATCTAAACACACTGAAAAC+GGG | + | chr4_1:73838714-73838733 | None:intergenic | 30.0% | |
| GTATAAAATGTCACAATGTC+TGG | - | chr4_1:73838767-73838786 | Msa0571260:intron | 30.0% | |
| TTAAACAACTGAGAAAAGTG+GGG | + | chr4_1:73838967-73838986 | None:intergenic | 30.0% | |
| CTTAAACAACTGAGAAAAGT+GGG | + | chr4_1:73838968-73838987 | None:intergenic | 30.0% | |
| TTGTGATAAAACTGTTCACT+TGG | - | chr4_1:73837515-73837534 | Msa0571260:CDS | 30.0% | |
| TTCAGATGTAATCAATGCAA+CGG | - | chr4_1:73837582-73837601 | Msa0571260:CDS | 30.0% | |
| TTGATGAAACACGAAATGAT+AGG | - | chr4_1:73837743-73837762 | Msa0571260:CDS | 30.0% | |
| TGATGAAACACGAAATGATA+GGG | - | chr4_1:73837744-73837763 | Msa0571260:CDS | 30.0% | |
| TGCATAATCTTAAATGACAC+GGG | - | chr4_1:73837946-73837965 | Msa0571260:intron | 30.0% | |
| ! | TTTAGGTGAGTTGAATATGT+TGG | + | chr4_1:73838000-73838019 | None:intergenic | 30.0% |
| AGTAACTATCAATCAATCGA+AGG | - | chr4_1:73838101-73838120 | Msa0571260:CDS | 30.0% | |
| ! | TTTCATGATTTTCAAACAGC+AGG | - | chr4_1:73838295-73838314 | Msa0571260:intron | 30.0% |
| TTTCATATGTTTACAGCCTA+GGG | - | chr4_1:73838429-73838448 | Msa0571260:CDS | 30.0% | |
| CAAGAAAACTGTATATCCAT+TGG | - | chr4_1:73838507-73838526 | Msa0571260:intron | 30.0% | |
| AACTGTATATCCATTGGAAA+AGG | - | chr4_1:73838513-73838532 | Msa0571260:intron | 30.0% | |
| TATATACACAATGCTGGATT+TGG | - | chr4_1:73838645-73838664 | Msa0571260:intron | 30.0% | |
| !!! | TTTTATACGGTATCGGTATA+AGG | + | chr4_1:73838687-73838706 | None:intergenic | 30.0% |
| AATCTAAACACACTGAAAAC+GGG | + | chr4_1:73838714-73838733 | None:intergenic | 30.0% | |
| GTATAAAATGTCACAATGTC+TGG | - | chr4_1:73838767-73838786 | Msa0571260:intron | 30.0% | |
| TTAAACAACTGAGAAAAGTG+GGG | + | chr4_1:73838967-73838986 | None:intergenic | 30.0% | |
| CTTAAACAACTGAGAAAAGT+GGG | + | chr4_1:73838968-73838987 | None:intergenic | 30.0% | |
| ! | TTGATAACCATGTCTTTCAC+TGG | - | chr4_1:73837471-73837490 | Msa0571260:CDS | 35.0% |
| GTTGATACATTATCTGCTGA+TGG | - | chr4_1:73837537-73837556 | Msa0571260:CDS | 35.0% | |
| GGATCATACAGCAAACAAAT+TGG | + | chr4_1:73837656-73837675 | None:intergenic | 35.0% | |
| CTTTCATATGTTTACAGCCT+AGG | - | chr4_1:73838428-73838447 | Msa0571260:CDS | 35.0% | |
| ! | AGAAAGCAGAAAGTTTGCTT+GGG | + | chr4_1:73838456-73838475 | None:intergenic | 35.0% |
| ! | AAGAAAGCAGAAAGTTTGCT+TGG | + | chr4_1:73838457-73838476 | None:intergenic | 35.0% |
| AAACTTTCTGCTTTCTTCTC+AGG | - | chr4_1:73838460-73838479 | Msa0571260:CDS | 35.0% | |
| AACTTTCTGCTTTCTTCTCA+GGG | - | chr4_1:73838461-73838480 | Msa0571260:CDS | 35.0% | |
| ! | GAAAACGGGTGTCTTTTATA+CGG | + | chr4_1:73838700-73838719 | None:intergenic | 35.0% |
| CTGTTTATGATAGTTGACAG+TGG | - | chr4_1:73838840-73838859 | Msa0571260:intron | 35.0% | |
| TTATGATAGTTGACAGTGGA+AGG | - | chr4_1:73838844-73838863 | Msa0571260:intron | 35.0% | |
| TTTACCACAAGTCATGCTTT+AGG | - | chr4_1:73838872-73838891 | Msa0571260:intron | 35.0% | |
| CCTTAAACAACTGAGAAAAG+TGG | + | chr4_1:73838969-73838988 | None:intergenic | 35.0% | |
| !! | CCACTTTTCTCAGTTGTTTA+AGG | - | chr4_1:73838966-73838985 | Msa0571260:intron | 35.0% |
| ! | TCTCAGTTGTTTAAGGCAAA+AGG | - | chr4_1:73838973-73838992 | Msa0571260:intron | 35.0% |
| ! | TTGATAACCATGTCTTTCAC+TGG | - | chr4_1:73837471-73837490 | Msa0571260:CDS | 35.0% |
| GTTGATACATTATCTGCTGA+TGG | - | chr4_1:73837537-73837556 | Msa0571260:CDS | 35.0% | |
| GGATCATACAGCAAACAAAT+TGG | + | chr4_1:73837656-73837675 | None:intergenic | 35.0% | |
| CTTTCATATGTTTACAGCCT+AGG | - | chr4_1:73838428-73838447 | Msa0571260:CDS | 35.0% | |
| ! | AGAAAGCAGAAAGTTTGCTT+GGG | + | chr4_1:73838456-73838475 | None:intergenic | 35.0% |
| ! | AAGAAAGCAGAAAGTTTGCT+TGG | + | chr4_1:73838457-73838476 | None:intergenic | 35.0% |
| AAACTTTCTGCTTTCTTCTC+AGG | - | chr4_1:73838460-73838479 | Msa0571260:CDS | 35.0% | |
| AACTTTCTGCTTTCTTCTCA+GGG | - | chr4_1:73838461-73838480 | Msa0571260:CDS | 35.0% | |
| ! | GAAAACGGGTGTCTTTTATA+CGG | + | chr4_1:73838700-73838719 | None:intergenic | 35.0% |
| CTGTTTATGATAGTTGACAG+TGG | - | chr4_1:73838840-73838859 | Msa0571260:intron | 35.0% | |
| TTATGATAGTTGACAGTGGA+AGG | - | chr4_1:73838844-73838863 | Msa0571260:intron | 35.0% | |
| TTTACCACAAGTCATGCTTT+AGG | - | chr4_1:73838872-73838891 | Msa0571260:intron | 35.0% | |
| CCTTAAACAACTGAGAAAAG+TGG | + | chr4_1:73838969-73838988 | None:intergenic | 35.0% | |
| !! | CCACTTTTCTCAGTTGTTTA+AGG | - | chr4_1:73838966-73838985 | Msa0571260:intron | 35.0% |
| ! | TCTCAGTTGTTTAAGGCAAA+AGG | - | chr4_1:73838973-73838992 | Msa0571260:intron | 35.0% |
| ACAAGCCTTGCATTTCTGTT+GGG | + | chr4_1:73837499-73837518 | None:intergenic | 40.0% | |
| TGTATGTATATACCGCGAGA+AGG | + | chr4_1:73837608-73837627 | None:intergenic | 40.0% | |
| AAGGATCTTATTACCCGTCT+GGG | + | chr4_1:73838189-73838208 | None:intergenic | 40.0% | |
| AAAGGATCTTATTACCCGTC+TGG | + | chr4_1:73838190-73838209 | None:intergenic | 40.0% | |
| AGAATACACACCAGTTCACT+AGG | + | chr4_1:73838325-73838344 | None:intergenic | 40.0% | |
| ! | GAAAGCAGAAAGTTTGCTTG+GGG | + | chr4_1:73838455-73838474 | None:intergenic | 40.0% |
| ! | GGGTGTCTTTTATACGGTAT+CGG | + | chr4_1:73838694-73838713 | None:intergenic | 40.0% |
| TACACCTAAAGCATGACTTG+TGG | + | chr4_1:73838879-73838898 | None:intergenic | 40.0% | |
| ! | TCATGCTTTAGGTGTACACA+TGG | - | chr4_1:73838883-73838902 | Msa0571260:intron | 40.0% |
| ACAAGCCTTGCATTTCTGTT+GGG | + | chr4_1:73837499-73837518 | None:intergenic | 40.0% | |
| TGTATGTATATACCGCGAGA+AGG | + | chr4_1:73837608-73837627 | None:intergenic | 40.0% | |
| AAGGATCTTATTACCCGTCT+GGG | + | chr4_1:73838189-73838208 | None:intergenic | 40.0% | |
| AAAGGATCTTATTACCCGTC+TGG | + | chr4_1:73838190-73838209 | None:intergenic | 40.0% | |
| AGAATACACACCAGTTCACT+AGG | + | chr4_1:73838325-73838344 | None:intergenic | 40.0% | |
| ! | GAAAGCAGAAAGTTTGCTTG+GGG | + | chr4_1:73838455-73838474 | None:intergenic | 40.0% |
| ! | GGGTGTCTTTTATACGGTAT+CGG | + | chr4_1:73838694-73838713 | None:intergenic | 40.0% |
| TACACCTAAAGCATGACTTG+TGG | + | chr4_1:73838879-73838898 | None:intergenic | 40.0% | |
| ! | TCATGCTTTAGGTGTACACA+TGG | - | chr4_1:73838883-73838902 | Msa0571260:intron | 40.0% |
| TTGGGTTCCAGTGAAAGACA+TGG | + | chr4_1:73837481-73837500 | None:intergenic | 45.0% | |
| TGGAACCCAACAGAAATGCA+AGG | - | chr4_1:73837491-73837510 | Msa0571260:CDS | 45.0% | |
| CACAAGCCTTGCATTTCTGT+TGG | + | chr4_1:73837500-73837519 | None:intergenic | 45.0% | |
| AGGATCTTATTACCCGTCTG+GGG | + | chr4_1:73838188-73838207 | None:intergenic | 45.0% | |
| AGGAGGTTATGTGCTGTCTT+TGG | - | chr4_1:73838244-73838263 | Msa0571260:intron | 45.0% | |
| GGAGGTTATGTGCTGTCTTT+GGG | - | chr4_1:73838245-73838264 | Msa0571260:intron | 45.0% | |
| GAGGTTATGTGCTGTCTTTG+GGG | - | chr4_1:73838246-73838265 | Msa0571260:intron | 45.0% | |
| ATGCTGGACCATGATTTCAG+TGG | - | chr4_1:73838601-73838620 | Msa0571260:intron | 45.0% | |
| TGCTGGACCATGATTTCAGT+GGG | - | chr4_1:73838602-73838621 | Msa0571260:intron | 45.0% | |
| AAAAGGGCCCACTGAAATCA+TGG | + | chr4_1:73838612-73838631 | None:intergenic | 45.0% | |
| ! | TGCTTTAGGTGTACACATGG+AGG | - | chr4_1:73838886-73838905 | Msa0571260:intron | 45.0% |
| CAAGAGCAGCATAGGATGAA+GGG | + | chr4_1:73838924-73838943 | None:intergenic | 45.0% | |
| TCAAGAGCAGCATAGGATGA+AGG | + | chr4_1:73838925-73838944 | None:intergenic | 45.0% | |
| TCATCCTATGCTGCTCTTGA+TGG | - | chr4_1:73838925-73838944 | Msa0571260:intron | 45.0% | |
| GAATCCATCAAGAGCAGCAT+AGG | + | chr4_1:73838932-73838951 | None:intergenic | 45.0% | |
| AGACACAGAGACAGAGACAA+AGG | - | chr4_1:73839089-73839108 | Msa0571260:CDS | 45.0% | |
| ACACCTCTTGTGTAACAGCA+GGG | + | chr4_1:73839125-73839144 | None:intergenic | 45.0% | |
| TACACCTCTTGTGTAACAGC+AGG | + | chr4_1:73839126-73839145 | None:intergenic | 45.0% | |
| TTGGGTTCCAGTGAAAGACA+TGG | + | chr4_1:73837481-73837500 | None:intergenic | 45.0% | |
| TGGAACCCAACAGAAATGCA+AGG | - | chr4_1:73837491-73837510 | Msa0571260:CDS | 45.0% | |
| CACAAGCCTTGCATTTCTGT+TGG | + | chr4_1:73837500-73837519 | None:intergenic | 45.0% | |
| AGGATCTTATTACCCGTCTG+GGG | + | chr4_1:73838188-73838207 | None:intergenic | 45.0% | |
| AGGAGGTTATGTGCTGTCTT+TGG | - | chr4_1:73838244-73838263 | Msa0571260:intron | 45.0% | |
| GGAGGTTATGTGCTGTCTTT+GGG | - | chr4_1:73838245-73838264 | Msa0571260:intron | 45.0% | |
| GAGGTTATGTGCTGTCTTTG+GGG | - | chr4_1:73838246-73838265 | Msa0571260:intron | 45.0% | |
| ATGCTGGACCATGATTTCAG+TGG | - | chr4_1:73838601-73838620 | Msa0571260:intron | 45.0% | |
| TGCTGGACCATGATTTCAGT+GGG | - | chr4_1:73838602-73838621 | Msa0571260:intron | 45.0% | |
| AAAAGGGCCCACTGAAATCA+TGG | + | chr4_1:73838612-73838631 | None:intergenic | 45.0% | |
| ! | TGCTTTAGGTGTACACATGG+AGG | - | chr4_1:73838886-73838905 | Msa0571260:intron | 45.0% |
| CAAGAGCAGCATAGGATGAA+GGG | + | chr4_1:73838924-73838943 | None:intergenic | 45.0% | |
| TCAAGAGCAGCATAGGATGA+AGG | + | chr4_1:73838925-73838944 | None:intergenic | 45.0% | |
| TCATCCTATGCTGCTCTTGA+TGG | - | chr4_1:73838925-73838944 | Msa0571260:intron | 45.0% | |
| GAATCCATCAAGAGCAGCAT+AGG | + | chr4_1:73838932-73838951 | None:intergenic | 45.0% | |
| AGACACAGAGACAGAGACAA+AGG | - | chr4_1:73839089-73839108 | Msa0571260:CDS | 45.0% | |
| ACACCTCTTGTGTAACAGCA+GGG | + | chr4_1:73839125-73839144 | None:intergenic | 45.0% | |
| TACACCTCTTGTGTAACAGC+AGG | + | chr4_1:73839126-73839145 | None:intergenic | 45.0% | |
| ! | TCACGCTGAGCAGCTTTTCA+AGG | - | chr4_1:73838142-73838161 | Msa0571260:CDS | 50.0% |
| ! | ATTACCCGTCTGGGGTTTCT+TGG | + | chr4_1:73838180-73838199 | None:intergenic | 50.0% |
| AGCAGGAAAGCCTAGTGAAC+TGG | - | chr4_1:73838312-73838331 | Msa0571260:intron | 50.0% | |
| TCTGTCTCTGTGTCTGATGC+TGG | + | chr4_1:73839084-73839103 | None:intergenic | 50.0% | |
| AGACCCTGCTGTTACACAAG+AGG | - | chr4_1:73839119-73839138 | Msa0571260:CDS | 50.0% | |
| ! | TCACGCTGAGCAGCTTTTCA+AGG | - | chr4_1:73838142-73838161 | Msa0571260:CDS | 50.0% |
| ! | ATTACCCGTCTGGGGTTTCT+TGG | + | chr4_1:73838180-73838199 | None:intergenic | 50.0% |
| AGCAGGAAAGCCTAGTGAAC+TGG | - | chr4_1:73838312-73838331 | Msa0571260:intron | 50.0% | |
| TCTGTCTCTGTGTCTGATGC+TGG | + | chr4_1:73839084-73839103 | None:intergenic | 50.0% | |
| AGACCCTGCTGTTACACAAG+AGG | - | chr4_1:73839119-73839138 | Msa0571260:CDS | 50.0% | |
| TCAATGCAACGGCCTTCTCG+CGG | - | chr4_1:73837593-73837612 | Msa0571260:CDS | 55.0% | |
| ! | GAAAGTTTGCTTGGGGCCCT+AGG | + | chr4_1:73838448-73838467 | None:intergenic | 55.0% |
| TCAATGCAACGGCCTTCTCG+CGG | - | chr4_1:73837593-73837612 | Msa0571260:CDS | 55.0% | |
| ! | GAAAGTTTGCTTGGGGCCCT+AGG | + | chr4_1:73838448-73838467 | None:intergenic | 55.0% |
| !! | CTGGGGTTTCTTGGTGGCGA+AGG | + | chr4_1:73838171-73838190 | None:intergenic | 60.0% |
| CGCCACCAAGAAACCCCAGA+CGG | - | chr4_1:73838172-73838191 | Msa0571260:intron | 60.0% | |
| GCCACCAAGAAACCCCAGAC+GGG | - | chr4_1:73838173-73838192 | Msa0571260:intron | 60.0% | |
| ! | ACCCGTCTGGGGTTTCTTGG+TGG | + | chr4_1:73838177-73838196 | None:intergenic | 60.0% |
| !! | CTGGGGTTTCTTGGTGGCGA+AGG | + | chr4_1:73838171-73838190 | None:intergenic | 60.0% |
| CGCCACCAAGAAACCCCAGA+CGG | - | chr4_1:73838172-73838191 | Msa0571260:intron | 60.0% | |
| GCCACCAAGAAACCCCAGAC+GGG | - | chr4_1:73838173-73838192 | Msa0571260:intron | 60.0% | |
| ! | ACCCGTCTGGGGTTTCTTGG+TGG | + | chr4_1:73838177-73838196 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 73837471 | 73839146 | 73837471 | ID=Msa0571260;Name=Msa0571260 |
| chr4_1 | mRNA | 73837471 | 73839146 | 73837471 | ID=Msa0571260-mRNA-1;Parent=Msa0571260;Name=Msa0571260-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|5|0|214 |
| chr4_1 | exon | 73839003 | 73839146 | 73839003 | ID=Msa0571260-mRNA-1:exon:25371;Parent=Msa0571260-mRNA-1 |
| chr4_1 | exon | 73838423 | 73838519 | 73838423 | ID=Msa0571260-mRNA-1:exon:25370;Parent=Msa0571260-mRNA-1 |
| chr4_1 | exon | 73838284 | 73838303 | 73838284 | ID=Msa0571260-mRNA-1:exon:25369;Parent=Msa0571260-mRNA-1 |
| chr4_1 | exon | 73838083 | 73838172 | 73838083 | ID=Msa0571260-mRNA-1:exon:25368;Parent=Msa0571260-mRNA-1 |
| chr4_1 | exon | 73837471 | 73837764 | 73837471 | ID=Msa0571260-mRNA-1:exon:25367;Parent=Msa0571260-mRNA-1 |
| chr4_1 | CDS | 73839003 | 73839146 | 73839003 | ID=Msa0571260-mRNA-1:cds;Parent=Msa0571260-mRNA-1 |
| chr4_1 | CDS | 73838423 | 73838519 | 73838423 | ID=Msa0571260-mRNA-1:cds;Parent=Msa0571260-mRNA-1 |
| chr4_1 | CDS | 73838284 | 73838303 | 73838284 | ID=Msa0571260-mRNA-1:cds;Parent=Msa0571260-mRNA-1 |
| chr4_1 | CDS | 73838083 | 73838172 | 73838083 | ID=Msa0571260-mRNA-1:cds;Parent=Msa0571260-mRNA-1 |
| chr4_1 | CDS | 73837471 | 73837764 | 73837471 | ID=Msa0571260-mRNA-1:cds;Parent=Msa0571260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
