Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571270 | XP_013447014.1 | 98.701 | 154 | 2 | 0 | 56 | 209 | 1 | 154 | 1.17e-108 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571270 | sp|Q1G3Q4|RITF1_ARATH | 34.356 | 163 | 102 | 3 | 18 | 179 | 2 | 160 | 2.09e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571270 | A0A072TV38 | 98.701 | 154 | 2 | 0 | 56 | 209 | 1 | 154 | 5.59e-109 | 318 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0571270 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571270 | MtrunA17_Chr8g0386511 | 98.701 | 154 | 2 | 0 | 56 | 209 | 1 | 154 | 1.08e-112 | 318 |
| Msa0571270 | MtrunA17_Chr5g0434331 | 38.119 | 202 | 102 | 3 | 8 | 209 | 29 | 207 | 9.36e-44 | 145 |
| Msa0571270 | MtrunA17_Chr7g0265291 | 34.783 | 207 | 110 | 7 | 19 | 208 | 4 | 202 | 1.99e-29 | 108 |
| Msa0571270 | MtrunA17_Chr1g0179781 | 32.323 | 198 | 120 | 5 | 22 | 208 | 7 | 201 | 3.33e-27 | 102 |
| Msa0571270 | MtrunA17_Chr2g0297251 | 36.538 | 156 | 94 | 3 | 21 | 175 | 36 | 187 | 5.07e-27 | 103 |
| Msa0571270 | MtrunA17_Chr4g0040071 | 31.818 | 198 | 120 | 7 | 22 | 208 | 15 | 208 | 1.27e-25 | 99.0 |
| Msa0571270 | MtrunA17_Chr7g0230511 | 31.148 | 183 | 108 | 6 | 22 | 191 | 9 | 186 | 2.71e-25 | 99.0 |
| Msa0571270 | MtrunA17_Chr4g0065041 | 36.111 | 144 | 87 | 3 | 20 | 162 | 6 | 145 | 3.00e-25 | 99.0 |
| Msa0571270 | MtrunA17_Chr5g0395181 | 29.798 | 198 | 131 | 5 | 15 | 208 | 14 | 207 | 3.59e-24 | 95.1 |
| Msa0571270 | MtrunA17_Chr5g0411151 | 31.220 | 205 | 114 | 7 | 22 | 208 | 35 | 230 | 8.16e-24 | 94.7 |
| Msa0571270 | MtrunA17_Chr8g0366581 | 30.500 | 200 | 122 | 7 | 22 | 208 | 33 | 228 | 1.04e-22 | 91.7 |
| Msa0571270 | MtrunA17_Chr8g0392151 | 32.432 | 148 | 75 | 5 | 24 | 150 | 15 | 158 | 8.46e-19 | 81.6 |
| Msa0571270 | MtrunA17_Chr2g0320561 | 30.769 | 169 | 102 | 8 | 24 | 180 | 6 | 171 | 9.01e-15 | 70.5 |
| Msa0571270 | MtrunA17_Chr4g0020811 | 29.861 | 144 | 79 | 6 | 24 | 152 | 8 | 144 | 9.18e-13 | 63.5 |
| Msa0571270 | MtrunA17_Chr1g0161601 | 41.975 | 81 | 44 | 2 | 24 | 104 | 50 | 127 | 1.08e-12 | 63.2 |
| Msa0571270 | MtrunA17_Chr2g0308401 | 29.861 | 144 | 79 | 6 | 24 | 152 | 6 | 142 | 2.10e-12 | 62.4 |
| Msa0571270 | MtrunA17_Chr2g0320551 | 32.867 | 143 | 82 | 6 | 24 | 155 | 6 | 145 | 1.07e-11 | 60.8 |
| Msa0571270 | MtrunA17_Chr4g0052451 | 38.095 | 84 | 44 | 2 | 73 | 150 | 10 | 91 | 3.10e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571270 | AT2G27930.1 | 37.438 | 203 | 98 | 7 | 19 | 208 | 1 | 187 | 6.45e-29 | 107 |
| Msa0571270 | AT2G27930.4 | 37.438 | 203 | 98 | 7 | 19 | 208 | 1 | 187 | 6.45e-29 | 107 |
| Msa0571270 | AT1G31040.1 | 32.468 | 231 | 107 | 8 | 21 | 208 | 18 | 242 | 1.35e-28 | 107 |
| Msa0571270 | AT2G01818.1 | 32.589 | 224 | 123 | 9 | 12 | 209 | 1 | 222 | 4.73e-28 | 105 |
| Msa0571270 | AT5G46710.3 | 32.547 | 212 | 104 | 6 | 22 | 208 | 12 | 209 | 4.94e-27 | 102 |
| Msa0571270 | AT5G46710.1 | 32.547 | 212 | 104 | 6 | 22 | 208 | 28 | 225 | 7.54e-27 | 102 |
| Msa0571270 | AT2G12646.1 | 34.356 | 163 | 102 | 3 | 18 | 179 | 2 | 160 | 2.12e-26 | 102 |
| Msa0571270 | AT2G12646.2 | 34.356 | 163 | 102 | 3 | 18 | 179 | 2 | 160 | 2.12e-26 | 102 |
| Msa0571270 | AT1G32700.1 | 32.195 | 205 | 123 | 6 | 16 | 208 | 6 | 206 | 6.17e-26 | 100 |
| Msa0571270 | AT2G12646.3 | 35.000 | 160 | 99 | 3 | 21 | 179 | 2 | 157 | 1.17e-25 | 100 |
| Msa0571270 | AT1G76590.1 | 32.787 | 183 | 109 | 6 | 10 | 190 | 6 | 176 | 1.83e-25 | 99.8 |
| Msa0571270 | AT4G17900.2 | 32.143 | 196 | 121 | 5 | 22 | 208 | 20 | 212 | 1.01e-24 | 97.1 |
| Msa0571270 | AT1G43000.2 | 31.718 | 227 | 124 | 8 | 7 | 208 | 3 | 223 | 1.05e-24 | 97.1 |
| Msa0571270 | AT4G17900.1 | 32.143 | 196 | 121 | 5 | 22 | 208 | 34 | 226 | 1.07e-24 | 97.1 |
| Msa0571270 | AT1G43000.1 | 31.944 | 216 | 118 | 7 | 18 | 208 | 5 | 216 | 1.10e-24 | 97.1 |
| Msa0571270 | AT3G60670.1 | 36.296 | 135 | 81 | 3 | 20 | 153 | 5 | 135 | 3.01e-24 | 96.3 |
| Msa0571270 | AT1G21000.1 | 28.511 | 235 | 116 | 10 | 22 | 208 | 16 | 246 | 2.53e-22 | 91.3 |
| Msa0571270 | AT1G21000.2 | 28.511 | 235 | 116 | 10 | 22 | 208 | 13 | 243 | 2.63e-22 | 91.3 |
| Msa0571270 | AT2G27930.3 | 38.462 | 143 | 74 | 5 | 19 | 150 | 1 | 140 | 1.69e-20 | 84.7 |
| Msa0571270 | AT2G27930.2 | 38.462 | 143 | 74 | 5 | 19 | 150 | 1 | 140 | 1.69e-20 | 84.7 |
| Msa0571270 | AT5G46710.2 | 34.507 | 142 | 88 | 4 | 11 | 150 | 17 | 155 | 3.25e-20 | 84.0 |
| Msa0571270 | AT1G32700.2 | 31.765 | 170 | 101 | 5 | 50 | 208 | 2 | 167 | 6.17e-19 | 80.9 |
| Msa0571270 | AT2G27930.5 | 34.483 | 145 | 69 | 4 | 75 | 208 | 61 | 190 | 4.40e-13 | 65.5 |
| Msa0571270 | AT2G27930.6 | 34.483 | 145 | 69 | 4 | 75 | 208 | 61 | 190 | 4.40e-13 | 65.5 |
| Msa0571270 | AT2G01818.2 | 33.121 | 157 | 80 | 7 | 76 | 209 | 4 | 158 | 5.93e-12 | 61.6 |
Find 43 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAGGTTTAGAATTATTT+TGG | 0.154615 | 4_1:-73840218 | Msa0571270:three_prime_UTR |
| CTGGACCTACTTTGGGAAAA+AGG | 0.182649 | 4_1:-73840388 | Msa0571270:CDS |
| GAAACACAGGAGGGAACTTC+TGG | 0.286766 | 4_1:-73840407 | Msa0571270:CDS |
| AAAAGAGCCTCAAGCCAAAT+TGG | 0.306260 | 4_1:+73841651 | None:intergenic |
| TATAATGCCATATGAAAATA+AGG | 0.324258 | 4_1:+73840169 | None:intergenic |
| TCAAGTGGTGTTGTGCTAAC+TGG | 0.361118 | 4_1:+73840473 | None:intergenic |
| GGGAACTTCTGGACCTACTT+TGG | 0.363789 | 4_1:-73840396 | Msa0571270:CDS |
| CACCAGATGATATACAATAT+TGG | 0.377985 | 4_1:+73841538 | None:intergenic |
| CTACTGTGCCCTTTCTTGTA+AGG | 0.399035 | 4_1:-73840636 | Msa0571270:intron |
| GGAACTTCTGGACCTACTTT+GGG | 0.401204 | 4_1:-73840395 | Msa0571270:CDS |
| TTCCTCAGGACCTTCCATCC+AGG | 0.406819 | 4_1:-73840447 | Msa0571270:CDS |
| CCACTTAAGCCTTTAAAAGA+AGG | 0.431553 | 4_1:+73840337 | None:intergenic |
| CCAGGGTCCTCCTCAGCATC+AGG | 0.432791 | 4_1:-73840429 | Msa0571270:CDS |
| GCACAGTAGCGATATAAATC+AGG | 0.468363 | 4_1:+73840650 | None:intergenic |
| TCCTCAGGACCTTCCATCCA+GGG | 0.475053 | 4_1:-73840446 | Msa0571270:CDS |
| CGTAGACTTACAAAAGCAAC+AGG | 0.478767 | 4_1:-73840766 | Msa0571270:intron |
| TAGTCATCACCTTACAAGAA+AGG | 0.491098 | 4_1:+73840627 | None:intergenic |
| CCTGATGCTGAGGAGGACCC+TGG | 0.491773 | 4_1:+73840429 | None:intergenic |
| TTGATGCTATCTCACTGAAC+TGG | 0.502645 | 4_1:+73840717 | None:intergenic |
| AGTCATCACCTTACAAGAAA+GGG | 0.507414 | 4_1:+73840628 | None:intergenic |
| GTATTGTACAGATTGCAATA+TGG | 0.511488 | 4_1:-73841568 | Msa0571270:CDS |
| TCCTGTGTTTCCTGATGCTG+AGG | 0.533529 | 4_1:+73840419 | None:intergenic |
| TGCCAATATTGTATATCATC+TGG | 0.537908 | 4_1:-73841540 | Msa0571270:CDS |
| CACTTAAGCCTTTAAAAGAA+GGG | 0.538156 | 4_1:+73840338 | None:intergenic |
| ACACCACTTGAGTCTTCCTC+AGG | 0.546058 | 4_1:-73840461 | Msa0571270:CDS |
| GTTCTACTCATCAAATTCGT+AGG | 0.546464 | 4_1:-73841605 | Msa0571270:CDS |
| TGTGTTTCCTGATGCTGAGG+AGG | 0.548455 | 4_1:+73840422 | None:intergenic |
| ATGCTGAGGAGGACCCTGGA+TGG | 0.559712 | 4_1:+73840433 | None:intergenic |
| TGTTGTTGCTCTGAGTGCTA+TGG | 0.578177 | 4_1:-73841466 | Msa0571270:CDS |
| ACTCATCTTGTCTTGTAACA+AGG | 0.581442 | 4_1:-73840234 | Msa0571270:three_prime_UTR |
| TTACAAAAGCAACAGGAAAG+TGG | 0.586060 | 4_1:-73840759 | Msa0571270:CDS |
| TCCTCAGCATCAGGAAACAC+AGG | 0.589871 | 4_1:-73840420 | Msa0571270:CDS |
| TGAGGAGGACCCTGGATGGA+AGG | 0.592506 | 4_1:+73840437 | None:intergenic |
| CTGTATAAGAGGATAATGAC+GGG | 0.598693 | 4_1:-73842675 | None:intergenic |
| ACCCTGGATGGAAGGTCCTG+AGG | 0.602741 | 4_1:+73840445 | None:intergenic |
| TAAAAGAAGGGAGATCTATG+AGG | 0.610889 | 4_1:+73840350 | None:intergenic |
| AATATATAGACATATTTACA+AGG | 0.614023 | 4_1:-73841490 | Msa0571270:CDS |
| GCTATCTCACTGAACTGGCG+AGG | 0.656835 | 4_1:+73840722 | None:intergenic |
| TCAGCATCAGGAAACACAGG+AGG | 0.659675 | 4_1:-73840417 | Msa0571270:CDS |
| GCTAACTGGATCCTCAGACT+CGG | 0.666411 | 4_1:+73840487 | None:intergenic |
| AATGCCATATGAAAATAAGG+AGG | 0.673457 | 4_1:+73840172 | None:intergenic |
| GGTCCTGAGGAAGACTCAAG+TGG | 0.678585 | 4_1:+73840458 | None:intergenic |
| CAGCATCAGGAAACACAGGA+GGG | 0.689712 | 4_1:-73840416 | Msa0571270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGTTGAAAAATAAAA+AGG | - | chr4_1:73841724-73841743 | Msa0571270:intron | 10.0% |
| !! | TTTATGTTGAAAAATAAAAA+GGG | - | chr4_1:73841725-73841744 | Msa0571270:intron | 10.0% |
| !!! | TATCTTTACATATTTTTACA+TGG | - | chr4_1:73840497-73840516 | Msa0571270:CDS | 15.0% |
| !! | ATATATTGTATGTTTGATAT+GGG | + | chr4_1:73840912-73840931 | None:intergenic | 15.0% |
| !! | AATATATTGTATGTTTGATA+TGG | + | chr4_1:73840913-73840932 | None:intergenic | 15.0% |
| !!! | TATATATTTTCAGTATTTTG+TGG | + | chr4_1:73841309-73841328 | None:intergenic | 15.0% |
| !! | AATATATAGACATATTTACA+AGG | - | chr4_1:73841321-73841340 | Msa0571270:intron | 15.0% |
| !! | AATATTCAATTAAAACTCCT+TGG | - | chr4_1:73840238-73840257 | Msa0571270:three_prime_UTR | 20.0% |
| !!! | ATAGATAAGCTCTTAAATTT+TGG | - | chr4_1:73840330-73840349 | Msa0571270:exon | 20.0% |
| !!! | TGAATATGAAGTACTTTATT+AGG | - | chr4_1:73840399-73840418 | Msa0571270:CDS | 20.0% |
| !!! | AAGATTTTCAAAGATAAACA+TGG | + | chr4_1:73840553-73840572 | None:intergenic | 20.0% |
| !!! | AATCATGCTTTAAAATGAAT+TGG | + | chr4_1:73840623-73840642 | None:intergenic | 20.0% |
| !! | ATATGTTAATTAGCATACAT+TGG | + | chr4_1:73840975-73840994 | None:intergenic | 20.0% |
| !!! | CTTTTGAGAGAAAATTATTT+TGG | - | chr4_1:73841178-73841197 | Msa0571270:intron | 20.0% |
| !!! | TATTTTTCCTTCATATTGTT+GGG | - | chr4_1:73841575-73841594 | Msa0571270:CDS | 20.0% |
| !!! | GAAAAATAAAAAGGGTATTT+TGG | - | chr4_1:73841733-73841752 | Msa0571270:intron | 20.0% |
| !! | GAGTTATTTGTAATTAAGTA+GGG | + | chr4_1:73841929-73841948 | None:intergenic | 20.0% |
| !! | AGAGTTATTTGTAATTAAGT+AGG | + | chr4_1:73841930-73841949 | None:intergenic | 20.0% |
| !! | AAGAAGAATCAAAACAAAAT+TGG | + | chr4_1:73842021-73842040 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTTGATTCTTCTT+TGG | - | chr4_1:73842021-73842040 | Msa0571270:intron | 20.0% |
| !!! | TTTTTATCTGAATTTTCATC+AGG | - | chr4_1:73842280-73842299 | Msa0571270:intron | 20.0% |
| !!! | AACAAGGTTTAGAATTATTT+TGG | - | chr4_1:73842593-73842612 | Msa0571270:intron | 20.0% |
| !! | TATAATGCCATATGAAAATA+AGG | + | chr4_1:73842645-73842664 | None:intergenic | 20.0% |
| ! | TTCTTCTACAAAAATGAACA+TGG | - | chr4_1:73840165-73840184 | Msa0571270:three_prime_UTR | 25.0% |
| ! | TGGTAGAAACATCTTATTAA+TGG | + | chr4_1:73840533-73840552 | None:intergenic | 25.0% |
| !!! | ATGCTTTAAAATGAATTGGT+TGG | + | chr4_1:73840619-73840638 | None:intergenic | 25.0% |
| !!! | CAATATGGAAGTATCAATTT+TGG | - | chr4_1:73840796-73840815 | Msa0571270:intron | 25.0% |
| !! | TTTAGCTCACAATTAAATAC+TGG | - | chr4_1:73840846-73840865 | Msa0571270:intron | 25.0% |
| !!! | TGGTTTTTTTGTTGTGTTAA+TGG | - | chr4_1:73840866-73840885 | Msa0571270:intron | 25.0% |
| ! | CAATATAAACTTTACTGACA+TGG | - | chr4_1:73841098-73841117 | Msa0571270:intron | 25.0% |
| !!! | TGGTTTTTCAACATTACTTT+GGG | + | chr4_1:73841143-73841162 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTCAACATTACTT+TGG | + | chr4_1:73841144-73841163 | None:intergenic | 25.0% |
| ! | GTAATGTTGAAAAACCAATT+TGG | - | chr4_1:73841146-73841165 | Msa0571270:intron | 25.0% |
| !! | ATATTTTCAGTATTTTGTGG+TGG | + | chr4_1:73841306-73841325 | None:intergenic | 25.0% |
| !!! | CTATTTTTCCTTCATATTGT+TGG | - | chr4_1:73841574-73841593 | Msa0571270:CDS | 25.0% |
| ! | TTGATTTAGAAACTGATCAT+AGG | + | chr4_1:73841851-73841870 | None:intergenic | 25.0% |
| ! | GAATCAAAACAAAATTGGTT+CGG | + | chr4_1:73842016-73842035 | None:intergenic | 25.0% |
| !!! | TATACCTCCTTATTTTCATA+TGG | - | chr4_1:73842635-73842654 | Msa0571270:intron | 25.0% |
| ACAAAAATGAACATGGTATG+TGG | - | chr4_1:73840172-73840191 | Msa0571270:three_prime_UTR | 30.0% | |
| TATACTTCCTCTGTGTTAAA+TGG | - | chr4_1:73840212-73840231 | Msa0571270:three_prime_UTR | 30.0% | |
| AACAATATTGCGAAGAAATC+TGG | + | chr4_1:73840465-73840484 | None:intergenic | 30.0% | |
| AAAGCATGATTGAAATAAGC+TGG | - | chr4_1:73840632-73840651 | Msa0571270:intron | 30.0% | |
| TAACTAGAACTACGCTAAAA+GGG | + | chr4_1:73840679-73840698 | None:intergenic | 30.0% | |
| ATAACTAGAACTACGCTAAA+AGG | + | chr4_1:73840680-73840699 | None:intergenic | 30.0% | |
| TAGTTATTCTCAAGTTCAAC+AGG | - | chr4_1:73840699-73840718 | Msa0571270:CDS | 30.0% | |
| TGAAGAAACATGTAGCAATA+TGG | - | chr4_1:73840781-73840800 | Msa0571270:intron | 30.0% | |
| GTATTGTACAGATTGCAATA+TGG | - | chr4_1:73841243-73841262 | Msa0571270:intron | 30.0% | |
| TGCCAATATTGTATATCATC+TGG | - | chr4_1:73841271-73841290 | Msa0571270:intron | 30.0% | |
| CACCAGATGATATACAATAT+TGG | + | chr4_1:73841276-73841295 | None:intergenic | 30.0% | |
| !! | TTTTGATTGCTCAGAAATAC+AGG | - | chr4_1:73841375-73841394 | Msa0571270:intron | 30.0% |
| ATAGGACTGGACAAAATATA+TGG | + | chr4_1:73841833-73841852 | None:intergenic | 30.0% | |
| TTTGGGAAAAAGGAAAAGAA+AGG | - | chr4_1:73842433-73842452 | Msa0571270:intron | 30.0% | |
| TTGGGAAAAAGGAAAAGAAA+GGG | - | chr4_1:73842434-73842453 | Msa0571270:intron | 30.0% | |
| ! | ATAGATCTCCCTTCTTTTAA+AGG | - | chr4_1:73842465-73842484 | Msa0571270:intron | 30.0% |
| ! | CACTTAAGCCTTTAAAAGAA+GGG | + | chr4_1:73842476-73842495 | None:intergenic | 30.0% |
| !! | CTTCTTTTAAAGGCTTAAGT+GGG | - | chr4_1:73842475-73842494 | Msa0571270:intron | 30.0% |
| AATGCCATATGAAAATAAGG+AGG | + | chr4_1:73842642-73842661 | None:intergenic | 30.0% | |
| TATTGCACCATTTAACACAG+AGG | + | chr4_1:73840222-73840241 | None:intergenic | 35.0% | |
| AAAAAGTCACATAGAGACCA+AGG | + | chr4_1:73840258-73840277 | None:intergenic | 35.0% | |
| AAGTTCAACAGGAAATCACT+TGG | - | chr4_1:73840710-73840729 | Msa0571270:CDS | 35.0% | |
| CAGGAAATCACTTGGAATTT+CGG | - | chr4_1:73840718-73840737 | Msa0571270:CDS | 35.0% | |
| AATGGTGACATGAGTTAAGA+AGG | - | chr4_1:73840884-73840903 | Msa0571270:intron | 35.0% | |
| !! | ACTGACATGGTTTAATTTGC+AGG | - | chr4_1:73841111-73841130 | Msa0571270:intron | 35.0% |
| !! | TGAAAAACCAATTTGGCTTG+AGG | - | chr4_1:73841153-73841172 | Msa0571270:intron | 35.0% |
| GTTCTACTCATCAAATTCGT+AGG | - | chr4_1:73841206-73841225 | Msa0571270:intron | 35.0% | |
| AGAATCTCCCAACAATATGA+AGG | + | chr4_1:73841585-73841604 | None:intergenic | 35.0% | |
| ! | AGAACGACTTTACTAGCTTA+AGG | - | chr4_1:73841612-73841631 | Msa0571270:CDS | 35.0% |
| ! | GAACGACTTTACTAGCTTAA+GGG | - | chr4_1:73841613-73841632 | Msa0571270:CDS | 35.0% |
| ! | AACGACTTTACTAGCTTAAG+GGG | - | chr4_1:73841614-73841633 | Msa0571270:CDS | 35.0% |
| ! | TTTTGTCCTTCACTAACCAT+GGG | + | chr4_1:73841785-73841804 | None:intergenic | 35.0% |
| ! | TTTTTGTCCTTCACTAACCA+TGG | + | chr4_1:73841786-73841805 | None:intergenic | 35.0% |
| CTGGACAAAATATATGGCAA+GGG | + | chr4_1:73841827-73841846 | None:intergenic | 35.0% | |
| ACTGGACAAAATATATGGCA+AGG | + | chr4_1:73841828-73841847 | None:intergenic | 35.0% | |
| TTAGAAACTGATCATAGGAC+TGG | + | chr4_1:73841846-73841865 | None:intergenic | 35.0% | |
| !! | TTTGATTTGCTAGAGAACAG+GGG | + | chr4_1:73841902-73841921 | None:intergenic | 35.0% |
| !! | GTTTGATTTGCTAGAGAACA+GGG | + | chr4_1:73841903-73841922 | None:intergenic | 35.0% |
| !! | TGTTTGATTTGCTAGAGAAC+AGG | + | chr4_1:73841904-73841923 | None:intergenic | 35.0% |
| TTACAAAAGCAACAGGAAAG+TGG | - | chr4_1:73842052-73842071 | Msa0571270:intron | 35.0% | |
| ! | CTTTTTGTTGCAAACTTCAC+AGG | + | chr4_1:73842132-73842151 | None:intergenic | 35.0% |
| AGTCATCACCTTACAAGAAA+GGG | + | chr4_1:73842186-73842205 | None:intergenic | 35.0% | |
| TAGTCATCACCTTACAAGAA+AGG | + | chr4_1:73842187-73842206 | None:intergenic | 35.0% | |
| ! | CTTTTCCTTTTTCCCAAAGT+AGG | + | chr4_1:73842431-73842450 | None:intergenic | 35.0% |
| TAAAAGAAGGGAGATCTATG+AGG | + | chr4_1:73842464-73842483 | None:intergenic | 35.0% | |
| ! | CCACTTAAGCCTTTAAAAGA+AGG | + | chr4_1:73842477-73842496 | None:intergenic | 35.0% |
| !! | CCTTCTTTTAAAGGCTTAAG+TGG | - | chr4_1:73842474-73842493 | Msa0571270:intron | 35.0% |
| ACTCATCTTGTCTTGTAACA+AGG | - | chr4_1:73842577-73842596 | Msa0571270:intron | 35.0% | |
| !! | GACATGGTTTAATTTGCAGG+AGG | - | chr4_1:73841114-73841133 | Msa0571270:intron | 40.0% |
| AAAAGAGCCTCAAGCCAAAT+TGG | + | chr4_1:73841163-73841182 | None:intergenic | 40.0% | |
| CAAAATATATGGCAAGGGAC+TGG | + | chr4_1:73841822-73841841 | None:intergenic | 40.0% | |
| CGTAGACTTACAAAAGCAAC+AGG | - | chr4_1:73842045-73842064 | Msa0571270:intron | 40.0% | |
| TTGATGCTATCTCACTGAAC+TGG | + | chr4_1:73842097-73842116 | None:intergenic | 40.0% | |
| GCACAGTAGCGATATAAATC+AGG | + | chr4_1:73842164-73842183 | None:intergenic | 40.0% | |
| CGATCAAAGAGGACAATAAG+TGG | + | chr4_1:73842227-73842246 | None:intergenic | 40.0% | |
| TATCGAATGTGCGATCAAAG+AGG | + | chr4_1:73842238-73842257 | None:intergenic | 40.0% | |
| TTCAAAAAAGTCCGAGTCTG+AGG | - | chr4_1:73842313-73842332 | Msa0571270:intron | 40.0% | |
| ! | TGTTGTTGCTCTGAGTGCTA+TGG | - | chr4_1:73841345-73841364 | Msa0571270:intron | 45.0% |
| ! | TTTTGGATAGTCAGTACCCC+TGG | - | chr4_1:73841750-73841769 | Msa0571270:intron | 45.0% |
| AGTTGTCCCATGGTTAGTGA+AGG | - | chr4_1:73841776-73841795 | Msa0571270:intron | 45.0% | |
| CTACTGTGCCCTTTCTTGTA+AGG | - | chr4_1:73842175-73842194 | Msa0571270:intron | 45.0% | |
| !! | TCAAGTGGTGTTGTGCTAAC+TGG | + | chr4_1:73842341-73842360 | None:intergenic | 45.0% |
| GGAACTTCTGGACCTACTTT+GGG | - | chr4_1:73842416-73842435 | Msa0571270:intron | 45.0% | |
| ! | CTGGACCTACTTTGGGAAAA+AGG | - | chr4_1:73842423-73842442 | Msa0571270:intron | 45.0% |
| ACCATGGGACAACTTGTCCA+GGG | + | chr4_1:73841770-73841789 | None:intergenic | 50.0% | |
| AACCATGGGACAACTTGTCC+AGG | + | chr4_1:73841771-73841790 | None:intergenic | 50.0% | |
| GCTAACTGGATCCTCAGACT+CGG | + | chr4_1:73842327-73842346 | None:intergenic | 50.0% | |
| ACACCACTTGAGTCTTCCTC+AGG | - | chr4_1:73842350-73842369 | Msa0571270:intron | 50.0% | |
| TGTGTTTCCTGATGCTGAGG+AGG | + | chr4_1:73842392-73842411 | None:intergenic | 50.0% | |
| TCCTCAGCATCAGGAAACAC+AGG | - | chr4_1:73842391-73842410 | Msa0571270:intron | 50.0% | |
| TCCTGTGTTTCCTGATGCTG+AGG | + | chr4_1:73842395-73842414 | None:intergenic | 50.0% | |
| TCAGCATCAGGAAACACAGG+AGG | - | chr4_1:73842394-73842413 | Msa0571270:intron | 50.0% | |
| CAGCATCAGGAAACACAGGA+GGG | - | chr4_1:73842395-73842414 | Msa0571270:intron | 50.0% | |
| GAAACACAGGAGGGAACTTC+TGG | - | chr4_1:73842404-73842423 | Msa0571270:intron | 50.0% | |
| GGGAACTTCTGGACCTACTT+TGG | - | chr4_1:73842415-73842434 | Msa0571270:intron | 50.0% | |
| CCATGGGACAACTTGTCCAG+GGG | + | chr4_1:73841769-73841788 | None:intergenic | 55.0% | |
| GCTATCTCACTGAACTGGCG+AGG | + | chr4_1:73842092-73842111 | None:intergenic | 55.0% | |
| GGTCCTGAGGAAGACTCAAG+TGG | + | chr4_1:73842356-73842375 | None:intergenic | 55.0% | |
| TTCCTCAGGACCTTCCATCC+AGG | - | chr4_1:73842364-73842383 | Msa0571270:intron | 55.0% | |
| TCCTCAGGACCTTCCATCCA+GGG | - | chr4_1:73842365-73842384 | Msa0571270:intron | 55.0% | |
| CCCCTGGACAAGTTGTCCCA+TGG | - | chr4_1:73841766-73841785 | Msa0571270:intron | 60.0% | |
| ACCCTGGATGGAAGGTCCTG+AGG | + | chr4_1:73842369-73842388 | None:intergenic | 60.0% | |
| TGAGGAGGACCCTGGATGGA+AGG | + | chr4_1:73842377-73842396 | None:intergenic | 60.0% | |
| ATGCTGAGGAGGACCCTGGA+TGG | + | chr4_1:73842381-73842400 | None:intergenic | 60.0% | |
| CCTGATGCTGAGGAGGACCC+TGG | + | chr4_1:73842385-73842404 | None:intergenic | 65.0% | |
| CCAGGGTCCTCCTCAGCATC+AGG | - | chr4_1:73842382-73842401 | Msa0571270:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 73840151 | 73842682 | 73840151 | ID=Msa0571270;Name=Msa0571270 |
| chr4_1 | mRNA | 73840151 | 73842682 | 73840151 | ID=Msa0571270-mRNA-1;Parent=Msa0571270;Name=Msa0571270-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.66|0.75|0.75|1|1|4|198|209 |
| chr4_1 | exon | 73840151 | 73840531 | 73840151 | ID=Msa0571270-mRNA-1:exon:25389;Parent=Msa0571270-mRNA-1 |
| chr4_1 | exon | 73840637 | 73840783 | 73840637 | ID=Msa0571270-mRNA-1:exon:25388;Parent=Msa0571270-mRNA-1 |
| chr4_1 | exon | 73841437 | 73841700 | 73841437 | ID=Msa0571270-mRNA-1:exon:25387;Parent=Msa0571270-mRNA-1 |
| chr4_1 | exon | 73842647 | 73842682 | 73842647 | ID=Msa0571270-mRNA-1:exon:25386;Parent=Msa0571270-mRNA-1 |
| chr4_1 | CDS | 73842647 | 73842682 | 73842647 | ID=Msa0571270-mRNA-1:cds;Parent=Msa0571270-mRNA-1 |
| chr4_1 | CDS | 73841437 | 73841700 | 73841437 | ID=Msa0571270-mRNA-1:cds;Parent=Msa0571270-mRNA-1 |
| chr4_1 | CDS | 73840637 | 73840783 | 73840637 | ID=Msa0571270-mRNA-1:cds;Parent=Msa0571270-mRNA-1 |
| chr4_1 | CDS | 73840349 | 73840531 | 73840349 | ID=Msa0571270-mRNA-1:cds;Parent=Msa0571270-mRNA-1 |
| chr4_1 | three_prime_UTR | 73840151 | 73840348 | 73840151 | ID=Msa0571270-mRNA-1:three_prime_utr;Parent=Msa0571270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
