AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0571570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0571570 MtrunA17_Chr8g0386921 96.535 606 16 1 1 601 1 606 0.0 1210
Msa0571570 MtrunA17_Chr1g0185621 55.435 184 73 3 4 182 12 191 1.28e-60 213
Msa0571570 MtrunA17_Chr1g0185621 32.281 285 148 9 302 564 359 620 1.76e-24 108
Msa0571570 MtrunA17_Chr5g0411341 33.140 172 97 5 19 181 60 222 1.07e-21 99.8
Msa0571570 MtrunA17_Chr5g0411341 47.761 67 33 1 397 463 489 553 1.98e-11 67.0
Msa0571570 MtrunA17_Chr5g0411331 32.105 190 110 6 4 184 29 208 4.38e-21 93.2
Msa0571570 MtrunA17_Chr8g0366751 28.906 256 140 12 19 253 69 303 6.51e-17 84.3
Msa0571570 MtrunA17_Chr8g0366751 49.180 61 31 0 397 457 458 518 1.79e-11 67.0
Msa0571570 MtrunA17_Chr7g0225901 42.857 84 48 0 382 465 69 152 7.82e-15 74.7
Msa0571570 MtrunA17_Chr7g0275821 46.429 84 37 1 397 472 248 331 1.87e-14 75.9
Msa0571570 MtrunA17_Chr3g0131691 34.591 159 82 4 402 557 299 438 1.00e-13 73.9
Msa0571570 MtrunA17_Chr1g0211081 29.630 189 111 6 381 557 297 475 3.55e-13 72.4
Msa0571570 MtrunA17_Chr6g0468461 46.269 67 36 0 398 464 170 236 6.04e-13 70.5
Msa0571570 MtrunA17_Chr8g0346161 53.030 66 29 1 400 463 290 355 7.71e-13 70.9
Msa0571570 MtrunA17_Chr6g0468491 38.710 93 53 1 372 464 112 200 8.89e-13 69.7
Msa0571570 MtrunA17_Chr5g0400661 24.312 218 127 5 358 560 101 295 9.10e-13 69.7
Msa0571570 MtrunA17_Chr4g0002801 23.902 205 128 3 400 600 151 331 3.59e-12 68.2
Msa0571570 MtrunA17_Chr4g0049331 43.284 67 38 0 391 457 125 191 4.95e-12 67.4
Msa0571570 MtrunA17_Chr8g0346151 54.839 62 26 1 400 459 278 339 6.76e-12 68.2
Msa0571570 MtrunA17_Chr7g0260841 50.820 61 30 0 397 457 351 411 8.24e-12 67.8
Msa0571570 MtrunA17_Chr4g0054551 41.791 67 39 0 398 464 152 218 3.03e-11 65.1
Msa0571570 MtrunA17_Chr2g0307131 41.667 72 42 0 393 464 171 242 3.37e-11 65.1
Msa0571570 MtrunA17_Chr2g0280161 25.604 207 123 3 398 601 174 352 3.47e-11 65.1
Msa0571570 MtrunA17_Chr4g0054561 40.299 67 40 0 398 464 152 218 4.13e-11 64.7
Msa0571570 MtrunA17_Chr2g0333621 24.623 199 121 4 400 594 137 310 7.31e-11 63.9
Msa0571570 MtrunA17_Chr4g0002781 35.000 80 50 1 383 462 158 235 9.78e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0571570 AT5G41315.1 43.445 656 281 19 2 598 10 634 1.25e-159 471
Msa0571570 AT5G41315.3 43.333 660 276 20 2 598 15 639 1.68e-159 471
Msa0571570 AT5G41315.2 43.445 656 281 19 2 598 18 642 2.03e-159 471
Msa0571570 AT1G63650.3 43.631 628 280 16 2 598 9 593 7.06e-159 468
Msa0571570 AT1G63650.1 43.631 628 280 16 2 598 9 593 7.06e-159 468
Msa0571570 AT1G63650.2 43.631 628 280 16 2 598 9 593 7.06e-159 468
Msa0571570 AT4G09820.1 29.748 595 304 17 10 597 24 511 1.68e-69 234
Msa0571570 AT4G00480.3 49.495 198 78 3 6 184 23 217 9.29e-55 194
Msa0571570 AT4G00480.3 27.737 274 145 7 308 563 250 488 1.58e-16 83.2
Msa0571570 AT4G00480.1 49.495 198 78 3 6 184 23 217 1.71e-54 194
Msa0571570 AT4G00480.1 28.571 308 166 8 308 597 250 521 3.31e-21 97.8
Msa0571570 AT4G00480.2 49.495 198 78 3 6 184 23 217 9.08e-54 193
Msa0571570 AT4G00480.2 28.571 308 166 8 308 597 250 521 3.14e-21 98.2
Msa0571570 AT1G32640.1 32.948 173 100 5 19 181 83 249 3.24e-20 95.1
Msa0571570 AT1G32640.1 49.180 61 31 0 397 457 448 508 3.07e-11 66.6
Msa0571570 AT4G17880.1 29.609 179 103 5 19 182 78 248 4.67e-18 88.2
Msa0571570 AT4G17880.1 50.000 62 31 0 397 458 412 473 6.66e-12 68.9
Msa0571570 AT1G01260.1 32.812 192 111 6 17 198 64 247 7.71e-17 84.3
Msa0571570 AT1G01260.1 52.239 67 32 0 398 464 430 496 1.25e-13 74.3
Msa0571570 AT1G01260.2 32.812 192 111 6 17 198 64 247 7.71e-17 84.3
Msa0571570 AT1G01260.2 52.239 67 32 0 398 464 430 496 1.25e-13 74.3
Msa0571570 AT1G01260.3 32.812 192 111 6 17 198 64 247 7.71e-17 84.3
Msa0571570 AT1G01260.3 52.239 67 32 0 398 464 430 496 1.25e-13 74.3
Msa0571570 AT2G46510.1 30.000 180 106 5 17 182 64 237 3.24e-16 82.4
Msa0571570 AT2G46510.1 51.562 64 31 0 397 460 391 454 8.30e-13 71.6
Msa0571570 AT5G46830.1 30.939 181 112 5 19 187 49 228 1.14e-14 77.4
Msa0571570 AT1G12860.1 33.540 161 77 5 402 557 268 403 2.08e-14 76.3
Msa0571570 AT1G12860.2 33.540 161 77 5 402 557 268 403 2.38e-14 75.9
Msa0571570 AT3G26744.6 33.951 162 79 7 402 557 308 447 3.43e-14 75.9
Msa0571570 AT3G26744.1 33.951 162 79 7 402 557 308 447 3.64e-14 75.9
Msa0571570 AT3G26744.4 33.951 162 79 7 402 557 308 447 3.64e-14 75.9
Msa0571570 AT3G26744.2 33.951 162 79 7 402 557 308 447 3.64e-14 75.9
Msa0571570 AT4G37850.2 28.750 160 86 3 399 556 150 283 5.46e-14 73.9
Msa0571570 AT4G37850.1 28.750 160 86 3 399 556 150 283 5.46e-14 73.9
Msa0571570 AT4G16430.1 29.381 194 113 8 5 187 49 229 5.59e-14 75.1
Msa0571570 AT4G16430.1 46.154 91 40 2 397 478 316 406 8.93e-13 71.2
Msa0571570 AT5G46760.1 30.460 174 100 6 19 180 67 231 6.62e-14 75.1
Msa0571570 AT5G46760.1 30.061 163 92 3 397 559 411 551 2.02e-13 73.6
Msa0571570 AT2G22760.2 25.806 155 92 3 402 556 120 251 3.37e-12 67.8
Msa0571570 AT2G22760.1 25.806 155 92 3 402 556 120 251 4.13e-12 67.8
Msa0571570 AT2G22770.1 42.857 70 40 0 391 460 122 191 2.11e-11 65.9

Find 116 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTGTCACAACTTTCTT+TGG 0.194766 4_1:+74272350 Msa0571570:five_prime_UTR
AAAACTTTGAAGCCACTTTC+TGG 0.199218 4_1:-74276510 None:intergenic
AGGAAGGATATTAGAAATTA+TGG 0.249790 4_1:+74275992 Msa0571570:CDS
TAGAAAATGGCCAACCAATT+TGG 0.253067 4_1:+74273800 Msa0571570:CDS
TCAGCATCAATTAGCCAAAT+TGG 0.260352 4_1:-74273814 None:intergenic
AATATCCTTCCTGCTTTAGA+AGG 0.272945 4_1:-74275981 None:intergenic
AGATACCGAGTGGTACTATT+TGG 0.275916 4_1:+74273617 Msa0571570:CDS
ATTATGTCATATCCAACTTC+TGG 0.286568 4_1:-74274860 None:intergenic
AATGTAGCTCGAGCGTTAAT+AGG 0.287585 4_1:-74274767 None:intergenic
TAGTCACAAATGAAAATTCT+TGG 0.304530 4_1:+74276616 Msa0571570:three_prime_UTR
AGGTCCCTTGTCTTGGCCTT+TGG 0.323833 4_1:-74275246 None:intergenic
GAACTTAGTTCTGACGAAAT+AGG 0.323945 4_1:+74273486 Msa0571570:CDS
GGTTGAAAGCTGGCAAGTTT+TGG 0.326038 4_1:+74274955 Msa0571570:CDS
GCACTTGTAAATTGGTAGAT+AGG 0.328485 4_1:+74276728 Msa0571570:three_prime_UTR
AATATTACCTTACTATTTGA+AGG 0.331430 4_1:-74275463 None:intergenic
TTGTTTCAGCACTTGTAAAT+TGG 0.338805 4_1:+74276720 Msa0571570:three_prime_UTR
CCAGGAAGAGCTCTAGAAAA+TGG 0.340134 4_1:+74273787 Msa0571570:CDS
CTTCAAAAGGAAGTTCTAAT+AGG 0.340490 4_1:+74275907 Msa0571570:CDS
ATACCAACCCTCAAATAAAA+AGG 0.347491 4_1:+74273562 Msa0571570:CDS
TTTGGAAACAATAACTGATA+TGG 0.348285 4_1:-74272500 None:intergenic
TCATCTAATCATTAAATCTA+AGG 0.350741 4_1:+74276082 Msa0571570:CDS
TAATGCCAATCTTCACTTAG+AGG 0.362258 4_1:-74275103 None:intergenic
CAGCTAATGCAACAACAAAA+AGG 0.368472 4_1:+74276473 Msa0571570:CDS
AATGCATCCCCATTGTTAAC+TGG 0.382569 4_1:-74275162 None:intergenic
ATAGATTCATGTCAAATCAT+TGG 0.385491 4_1:-74276780 None:intergenic
TTGCAATCTTCTCCAACCTT+AGG 0.396557 4_1:-74275052 None:intergenic
GTTGAATTAATTCCAGAAGT+TGG 0.399420 4_1:+74274848 Msa0571570:CDS
AATGCATTTGAGCTACCATT+AGG 0.406315 4_1:-74274899 None:intergenic
TCAACCATGAATGTTTCATT+TGG 0.414054 4_1:-74274938 None:intergenic
CATGAAGGAGCAACTTGCTT+TGG 0.415492 4_1:+74272694 Msa0571570:CDS
AAATATTTCTTCTGCTCCTA+AGG 0.426521 4_1:+74275036 Msa0571570:CDS
TCTCTGGAATAAATACCTAT+TGG 0.426774 4_1:+74276680 Msa0571570:three_prime_UTR
AGCAATGACCAGTTAACAAT+GGG 0.426939 4_1:+74275154 Msa0571570:CDS
TGTTTCATTTGGTAGTTGAT+TGG 0.427906 4_1:-74274927 None:intergenic
ACTACCAAATGAAACATTCA+TGG 0.431417 4_1:+74274934 Msa0571570:CDS
ATGTAGCTCGAGCGTTAATA+GGG 0.437263 4_1:-74274766 None:intergenic
TTCAATTTAATTTCTCCCAC+TGG 0.443687 4_1:+74276572 Msa0571570:three_prime_UTR
TCGGTATCTGTGAGATCATC+AGG 0.444790 4_1:-74273603 None:intergenic
AATGGAGCTATGTAATATTC+TGG 0.445432 4_1:+74272732 Msa0571570:CDS
AATGGTTCCTTCAAATAGTA+AGG 0.449741 4_1:+74275456 Msa0571570:CDS
ATTTCTTCTGCTCCTAAGGT+TGG 0.458378 4_1:+74275040 Msa0571570:CDS
TATGCAGTCACTTGAATTCA+AGG 0.459835 4_1:-74275008 None:intergenic
CTTGGCCTTTGGAAATTCAC+AGG 0.474066 4_1:-74275235 None:intergenic
AACACAGCAACCTCTCCTAA+TGG 0.474418 4_1:+74274884 Msa0571570:CDS
TATAATAACAAAACTAACAA+TGG 0.477360 4_1:+74275813 Msa0571570:CDS
ATGAAAGGGGTTATTGAGCT+AGG 0.483817 4_1:+74274549 Msa0571570:CDS
TGGCAGTTAGAAGCATTCAA+TGG 0.489433 4_1:+74272714 Msa0571570:CDS
ATAATAACAAAACTAACAAT+GGG 0.493585 4_1:+74275814 Msa0571570:CDS
TGGATCCTCTAAGTGAAGAT+TGG 0.499708 4_1:+74275098 Msa0571570:CDS
GTCCATGTTACATCACCAAT+AGG 0.505991 4_1:-74276695 None:intergenic
TTGTGTGTTCTTAGTTTACC+AGG 0.508462 4_1:+74273769 Msa0571570:intron
TCTGTTGCATAAGTAGATAA+TGG 0.508707 4_1:+74272661 Msa0571570:exon
GAGGAAAATTTGTGACATAG+AGG 0.509163 4_1:+74275857 Msa0571570:CDS
ATGTGTTCAGATGCTTCAAA+AGG 0.516460 4_1:+74275894 Msa0571570:CDS
TCCTTCTTTCTGACAAAACA+TGG 0.517100 4_1:-74275393 None:intergenic
AGTTTGTATCTTACCCTGGT+TGG 0.519375 4_1:-74272769 None:intergenic
TTTGTATTCAACATTGGCCA+AGG 0.526754 4_1:+74273651 Msa0571570:CDS
TCAATAACCCCTTTCATGAA+AGG 0.530003 4_1:-74274543 None:intergenic
GAAGCTCAAAGAGAGTCAAC+AGG 0.540661 4_1:+74275729 Msa0571570:CDS
AAACATTCATGGTTGAAAGC+TGG 0.541473 4_1:+74274945 Msa0571570:CDS
ATGAAGTGCCCTTCTAAAGC+AGG 0.542240 4_1:+74275972 Msa0571570:CDS
CATCAATTAGCCAAATTGGT+TGG 0.542518 4_1:-74273810 None:intergenic
TACCTATTGGTGATGTAACA+TGG 0.542999 4_1:+74276693 Msa0571570:three_prime_UTR
AATGCTATGTTCTGATAAGA+TGG 0.547033 4_1:-74272416 None:intergenic
GACTCAGATGTTGACTTGAG+AGG 0.550432 4_1:-74272459 None:intergenic
CTTTGAAGCCACTTTCTGGA+GGG 0.551118 4_1:-74276506 None:intergenic
TAACAATGGGAAGAAACCTA+TGG 0.559013 4_1:+74275827 Msa0571570:CDS
ATATCCTTCCTGCTTTAGAA+GGG 0.566065 4_1:-74275980 None:intergenic
ATGTCCTTTGTATTCAACAT+TGG 0.570336 4_1:+74273645 Msa0571570:CDS
CAATCAACAGAAGAAGCTGA+TGG 0.570848 4_1:+74276053 Msa0571570:CDS
CAAGCAAGCCCTCCAGAAAG+TGG 0.573779 4_1:+74276498 Msa0571570:CDS
ACTCAGATGTTGACTTGAGA+GGG 0.587546 4_1:-74272458 None:intergenic
ACTTTGAAGCCACTTTCTGG+AGG 0.587869 4_1:-74276507 None:intergenic
AAGCAATGACCAGTTAACAA+TGG 0.588629 4_1:+74275153 Msa0571570:CDS
TTGTATTCAACATTGGCCAA+GGG 0.589483 4_1:+74273652 Msa0571570:CDS
TCTGAATCTGTTAACCAACC+AGG 0.589945 4_1:+74272755 Msa0571570:CDS
TAGTCGCGCTCTCCTCGCAA+AGG 0.589968 4_1:+74273858 Msa0571570:CDS
TGGTTTGCTTGAATCTCAAG+AGG 0.591791 4_1:+74275321 Msa0571570:CDS
AAAATCACATCATGATATGG+TGG 0.591939 4_1:+74275770 Msa0571570:CDS
TTTGTCAGAAAGAAGGAGAA+GGG 0.593126 4_1:+74275399 Msa0571570:CDS
GTTCCACGGATGCACACTGA+TGG 0.593993 4_1:+74275301 Msa0571570:CDS
ATCTCTGTGTGACACGCCAG+TGG 0.597772 4_1:-74276588 None:intergenic
AATCAACAGAAGAAGCTGAT+GGG 0.598027 4_1:+74276054 Msa0571570:CDS
ACAAGACTAGAGGCTGATGA+AGG 0.599190 4_1:+74275364 Msa0571570:CDS
AATTTCCAAAGGCCAAGACA+AGG 0.606654 4_1:+74275241 Msa0571570:CDS
ACCGAAAAGACTTACGTGAT+CGG 0.607356 4_1:-74274577 None:intergenic
AGTATATATATATGCAGCAG+AGG 0.608225 4_1:-74272382 None:intergenic
GAGGAGAATGACTATAGAGA+AGG 0.612043 4_1:+74275340 Msa0571570:CDS
TCAGGTGAAAGTGCTGCAGA+AGG 0.614503 4_1:-74273585 None:intergenic
AAGACAAGGAAAACAAGTCA+AGG 0.617178 4_1:+74273459 Msa0571570:CDS
AAACCATCAGTGTGCATCCG+TGG 0.620753 4_1:-74275304 None:intergenic
GAAGGGCAAAGCTAAATGAA+AGG 0.622506 4_1:+74275416 Msa0571570:CDS
CTATGTTCTGATAAGATGGT+TGG 0.625847 4_1:-74272412 None:intergenic
CAGATGTTGACTTGAGAGGG+AGG 0.627458 4_1:-74272455 None:intergenic
ATTTGAGCTACCATTAGGAG+AGG 0.628279 4_1:-74274894 None:intergenic
CACATCATGATATGGTGGAG+AGG 0.629700 4_1:+74275775 Msa0571570:CDS
AAGGAAAACAAGTCAAGGAG+TGG 0.630274 4_1:+74273464 Msa0571570:CDS
CTGAATCTGTTAACCAACCA+GGG 0.631174 4_1:+74272756 Msa0571570:CDS
AATGGTGCCACAAAACATGA+AGG 0.633238 4_1:+74272679 Msa0571570:exon
TTTGTGACATAGAGGAGACA+AGG 0.638297 4_1:+74275865 Msa0571570:CDS
TAGAGAAGGTACAAGACTAG+AGG 0.643862 4_1:+74275354 Msa0571570:CDS
GTGTGCCTGTGAATTTCCAA+AGG 0.646463 4_1:+74275230 Msa0571570:CDS
TTTCAGGGTGTTGAGCTGGG+GGG 0.650923 4_1:+74273413 Msa0571570:intron
CTGATATGGCTACAAAAGTG+TGG 0.653779 4_1:-74272486 None:intergenic
TCTCTGTGTGACACGCCAGT+GGG 0.655629 4_1:-74276587 None:intergenic
GAGAAACATATACCTTTGCG+AGG 0.658095 4_1:-74273870 None:intergenic
AATGTCAGTATGAGTGACAA+TGG 0.659345 4_1:+74275936 Msa0571570:CDS
TTGGCCAATGTTGAATACAA+AGG 0.661616 4_1:-74273649 None:intergenic
ATTTCCAAAGGCCAAGACAA+GGG 0.685503 4_1:+74275242 Msa0571570:CDS
AGTGCCCTTCTAAAGCAGGA+AGG 0.694013 4_1:+74275976 Msa0571570:CDS
GCAAACCAAATAGTACCACT+CGG 0.699870 4_1:-74273622 None:intergenic
CTGACGAAATAGGCTTACAG+AGG 0.712274 4_1:+74273496 Msa0571570:CDS
TTGAATTCGAGAAATAACGA+AGG 0.725975 4_1:+74274788 Msa0571570:CDS
GCAATGACCAGTTAACAATG+GGG 0.745763 4_1:+74275155 Msa0571570:CDS
ACAATGGAGAGATTAAGACA+AGG 0.747987 4_1:+74273445 Msa0571570:CDS
ATGATCTCACAGATACCGAG+TGG 0.748813 4_1:+74273607 Msa0571570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATAAAAATAAAAAA+TGG + chr4_1:74276544-74276563 Msa0571570:three_prime_UTR 0.0%
!!! TACTTTTTTTTTTTTTTGAA+AGG - chr4_1:74272323-74272342 None:intergenic 10.0%
!!! ATAAACATTTTAAAATTCTA+AGG - chr4_1:74276177-74276196 None:intergenic 10.0%
!! AGAAAACTATTAATAACTAT+TGG - chr4_1:74274192-74274211 None:intergenic 15.0%
!! TTTGGAAATTAATAGAATAA+AGG - chr4_1:74274407-74274426 None:intergenic 15.0%
!! ATTAATGTTATAAAAGACAA+TGG - chr4_1:74274607-74274626 None:intergenic 15.0%
!! TATAATAACAAAACTAACAA+TGG + chr4_1:74275813-74275832 Msa0571570:CDS 15.0%
!! ATAATAACAAAACTAACAAT+GGG + chr4_1:74275814-74275833 Msa0571570:CDS 15.0%
!! TATTTGAGTAAATAACAATT+TGG + chr4_1:74276119-74276138 Msa0571570:intron 15.0%
!! TAATAACATATCTAAATAGA+TGG - chr4_1:74276216-74276235 None:intergenic 15.0%
!! AAATATTGTTAATGTTATGT+AGG + chr4_1:74276373-74276392 Msa0571570:intron 15.0%
!! AATATTGTTAATGTTATGTA+GGG + chr4_1:74276374-74276393 Msa0571570:intron 15.0%
!! TGTACAATTTAAAAACAGAA+AGG - chr4_1:74273722-74273741 None:intergenic 20.0%
!! AAATTTACATGTGTTAAGAT+AGG + chr4_1:74274237-74274256 Msa0571570:intron 20.0%
!!! ATCTTAGATTATTAGTCTTT+AGG - chr4_1:74274430-74274449 None:intergenic 20.0%
!!! GATTTTTGGTTTCTAAAATT+TGG - chr4_1:74274463-74274482 None:intergenic 20.0%
!! AATATTACCTTACTATTTGA+AGG - chr4_1:74275466-74275485 None:intergenic 20.0%
!! ATTAAATACATTATTCATGC+AGG + chr4_1:74275635-74275654 Msa0571570:intron 20.0%
!! TAAAAAATCACATCATGATA+TGG + chr4_1:74275767-74275786 Msa0571570:CDS 20.0%
!! TCATCTAATCATTAAATCTA+AGG + chr4_1:74276082-74276101 Msa0571570:CDS 20.0%
!!! AATTTGGTATCTAAAATTGT+AGG + chr4_1:74276135-74276154 Msa0571570:intron 20.0%
!! AAACTTAGAGAATAATGTAA+GGG - chr4_1:74276246-74276265 None:intergenic 20.0%
!! ATATTGTTAATGTTATGTAG+GGG + chr4_1:74276375-74276394 Msa0571570:intron 20.0%
! TTTGGAAACAATAACTGATA+TGG - chr4_1:74272503-74272522 None:intergenic 25.0%
!!! TGTTTTTCAGTTACTAGATT+TGG - chr4_1:74272521-74272540 None:intergenic 25.0%
!! AAAAACAATCACTTCTGTTT+TGG + chr4_1:74272534-74272553 Msa0571570:five_prime_UTR 25.0%
! TAGCATAAACACATTTAATG+AGG - chr4_1:74272810-74272829 None:intergenic 25.0%
! AAACATGAACATATTCAAGA+AGG - chr4_1:74272847-74272866 None:intergenic 25.0%
! CATATAAAGTCTTAGTTTCA+AGG - chr4_1:74272878-74272897 None:intergenic 25.0%
!! CATCTAAGATAACAAATAAG+TGG - chr4_1:74273011-74273030 None:intergenic 25.0%
! ATGCTTAAGTCAATAATTGA+GGG - chr4_1:74273174-74273193 None:intergenic 25.0%
! TATGCTTAAGTCAATAATTG+AGG - chr4_1:74273175-74273194 None:intergenic 25.0%
! AGATTATCTTAGAGAGTTTA+TGG + chr4_1:74273199-74273218 Msa0571570:intron 25.0%
!! ACATGTCATAAATTGTTTTC+AGG + chr4_1:74273234-74273253 Msa0571570:intron 25.0%
!!! AAGGGTACTTATAAAAAGAA+AGG + chr4_1:74273982-74274001 Msa0571570:intron 25.0%
!! AGGGTACTTATAAAAAGAAA+GGG + chr4_1:74273983-74274002 Msa0571570:intron 25.0%
! TAACATTTATCTTCTTCCTT+TGG + chr4_1:74274053-74274072 Msa0571570:intron 25.0%
! TGGAGTTCATTTATAATACA+AGG - chr4_1:74274172-74274191 None:intergenic 25.0%
! TATCCATCCTTATTACTATT+TGG + chr4_1:74274312-74274331 Msa0571570:intron 25.0%
! ATCCATCCTTATTACTATTT+GGG + chr4_1:74274313-74274332 Msa0571570:intron 25.0%
!!! AGATTATTAGTCTTTAGGTT+TGG - chr4_1:74274425-74274444 None:intergenic 25.0%
!! AAATTACACAATGCATTGAT+AGG - chr4_1:74274485-74274504 None:intergenic 25.0%
! ACATTATTACAAGAAGTTGA+GGG - chr4_1:74274650-74274669 None:intergenic 25.0%
! AACATTATTACAAGAAGTTG+AGG - chr4_1:74274651-74274670 None:intergenic 25.0%
! ACTTCTTGTAATAATGTTTC+TGG + chr4_1:74274653-74274672 Msa0571570:intron 25.0%
!!! GTTTTTAACTCTTAGATCAA+TGG + chr4_1:74275438-74275457 Msa0571570:CDS 25.0%
! AATGATCAAGCTAAGAAATA+TGG - chr4_1:74275502-74275521 None:intergenic 25.0%
! AGGAAGGATATTAGAAATTA+TGG + chr4_1:74275992-74276011 Msa0571570:CDS 25.0%
! GAAACTTAGAGAATAATGTA+AGG - chr4_1:74276247-74276266 None:intergenic 25.0%
! TTGCAAAATGTTAATCAGAT+TGG - chr4_1:74276337-74276356 None:intergenic 25.0%
! TAGTCACAAATGAAAATTCT+TGG + chr4_1:74276616-74276635 Msa0571570:three_prime_UTR 25.0%
!! TAATAGAAAAAGTTAGTCTC+TGG + chr4_1:74276664-74276683 Msa0571570:three_prime_UTR 25.0%
! ATAGATTCATGTCAAATCAT+TGG - chr4_1:74276783-74276802 None:intergenic 25.0%
ATTTCTGTCACAACTTTCTT+TGG + chr4_1:74272350-74272369 Msa0571570:five_prime_UTR 30.0%
AGTATATATATATGCAGCAG+AGG - chr4_1:74272385-74272404 None:intergenic 30.0%
AATGCTATGTTCTGATAAGA+TGG - chr4_1:74272419-74272438 None:intergenic 30.0%
TCTGTTGCATAAGTAGATAA+TGG + chr4_1:74272661-74272680 Msa0571570:exon 30.0%
AATGGAGCTATGTAATATTC+TGG + chr4_1:74272732-74272751 Msa0571570:CDS 30.0%
!! TGCCAAAATTTGATTTGAGA+TGG + chr4_1:74272915-74272934 Msa0571570:intron 30.0%
! CTCCATCTCAAATCAAATTT+TGG - chr4_1:74272920-74272939 None:intergenic 30.0%
!! CAAAATTTGATTTGAGATGG+AGG + chr4_1:74272918-74272937 Msa0571570:intron 30.0%
TGAAAAATGGTCAAGGAAAA+AGG - chr4_1:74273398-74273417 None:intergenic 30.0%
!! TTTTTCCTTGACCATTTTTC+AGG + chr4_1:74273397-74273416 Msa0571570:intron 30.0%
!! TTTTCCTTGACCATTTTTCA+GGG + chr4_1:74273398-74273417 Msa0571570:intron 30.0%
ATACCAACCCTCAAATAAAA+AGG + chr4_1:74273562-74273581 Msa0571570:CDS 30.0%
ATGTCCTTTGTATTCAACAT+TGG + chr4_1:74273645-74273664 Msa0571570:CDS 30.0%
ACTAGAAAGGAACACAAAAA+AGG - chr4_1:74273696-74273715 None:intergenic 30.0%
ACTAAGAACACACAAATTTG+AGG - chr4_1:74273764-74273783 None:intergenic 30.0%
TATGTTTCTCTTTCTTTAGC+TGG + chr4_1:74273883-74273902 Msa0571570:intron 30.0%
ATAAAGGCCGTGTATAAAAA+GGG - chr4_1:74273952-74273971 None:intergenic 30.0%
TATAAAGGCCGTGTATAAAA+AGG - chr4_1:74273953-74273972 None:intergenic 30.0%
GCCTTTATAAACTCACAAAA+GGG + chr4_1:74273964-74273983 Msa0571570:intron 30.0%
! ACCCTTTTGTGAGTTTATAA+AGG - chr4_1:74273968-74273987 None:intergenic 30.0%
TGTTTAAGGAACAAAACCAA+AGG - chr4_1:74274072-74274091 None:intergenic 30.0%
TTAGACTAAACACTAAAGAG+TGG - chr4_1:74274277-74274296 None:intergenic 30.0%
TTCCCAAATAGTAATAAGGA+TGG - chr4_1:74274318-74274337 None:intergenic 30.0%
ATGTAATTGGTATTACGTAC+AGG - chr4_1:74274341-74274360 None:intergenic 30.0%
CTATGTAGCTTCAATGTAAT+TGG - chr4_1:74274354-74274373 None:intergenic 30.0%
!! CAATGCATTGATAGGATTTT+TGG - chr4_1:74274477-74274496 None:intergenic 30.0%
! TGTGTTTTCCTTTCATGAAA+GGG + chr4_1:74274535-74274554 Msa0571570:CDS 30.0%
TTGAATTCGAGAAATAACGA+AGG + chr4_1:74274788-74274807 Msa0571570:CDS 30.0%
GTTGAATTAATTCCAGAAGT+TGG + chr4_1:74274848-74274867 Msa0571570:CDS 30.0%
ATTATGTCATATCCAACTTC+TGG - chr4_1:74274863-74274882 None:intergenic 30.0%
! TGTTTCATTTGGTAGTTGAT+TGG - chr4_1:74274930-74274949 None:intergenic 30.0%
ACTACCAAATGAAACATTCA+TGG + chr4_1:74274934-74274953 Msa0571570:CDS 30.0%
TCAACCATGAATGTTTCATT+TGG - chr4_1:74274941-74274960 None:intergenic 30.0%
AAATATTTCTTCTGCTCCTA+AGG + chr4_1:74275036-74275055 Msa0571570:CDS 30.0%
TAACCAAAAAATGAGCTTAG+TGG + chr4_1:74275078-74275097 Msa0571570:CDS 30.0%
! AAGAATCAAGCTTTTGTGTT+TGG + chr4_1:74275200-74275219 Msa0571570:CDS 30.0%
! CTTCTTCAATAACTTTTGTG+AGG - chr4_1:74275269-74275288 None:intergenic 30.0%
AATGGTTCCTTCAAATAGTA+AGG + chr4_1:74275456-74275475 Msa0571570:CDS 30.0%
CATAATATTGTGTCAAACAC+AGG + chr4_1:74275564-74275583 Msa0571570:intron 30.0%
! TCTTTTTCTCAAGCTTTCTA+AGG - chr4_1:74275698-74275717 None:intergenic 30.0%
TGAGAAAAAGATAAGAGAGT+TGG + chr4_1:74275707-74275726 Msa0571570:CDS 30.0%
AAAATCACATCATGATATGG+TGG + chr4_1:74275770-74275789 Msa0571570:CDS 30.0%
!! ATTTTCCTCTTTTTCACCAT+AGG - chr4_1:74275846-74275865 None:intergenic 30.0%
! CTTCAAAAGGAAGTTCTAAT+AGG + chr4_1:74275907-74275926 Msa0571570:CDS 30.0%
TGAGATAATTGGTATTCTCA+TGG - chr4_1:74276310-74276329 None:intergenic 30.0%
! AGATTGGTTCTTGAGATAAT+TGG - chr4_1:74276321-74276340 None:intergenic 30.0%
! TGTAGGGGATTAATTTGATA+AGG + chr4_1:74276390-74276409 Msa0571570:intron 30.0%
! GTAGGGGATTAATTTGATAA+GGG + chr4_1:74276391-74276410 Msa0571570:intron 30.0%
!! TCCTTTTATTTGCAGTTCAA+AGG + chr4_1:74276448-74276467 Msa0571570:intron 30.0%
TCCTTTGAACTGCAAATAAA+AGG - chr4_1:74276452-74276471 None:intergenic 30.0%
! TTCAATTTAATTTCTCCCAC+TGG + chr4_1:74276572-74276591 Msa0571570:three_prime_UTR 30.0%
!! TCTCTGGAATAAATACCTAT+TGG + chr4_1:74276680-74276699 Msa0571570:three_prime_UTR 30.0%
TTGTTTCAGCACTTGTAAAT+TGG + chr4_1:74276720-74276739 Msa0571570:three_prime_UTR 30.0%
CTATGTTCTGATAAGATGGT+TGG - chr4_1:74272415-74272434 None:intergenic 35.0%
AAACAGTTTGTATCTTACCC+TGG - chr4_1:74272776-74272795 None:intergenic 35.0%
! CTGCATTAAAGGTTTTTGCT+AGG + chr4_1:74273097-74273116 Msa0571570:intron 35.0%
CGATAAGCTGTTTATCAACA+AGG + chr4_1:74273372-74273391 Msa0571570:intron 35.0%
ACAATGGAGAGATTAAGACA+AGG + chr4_1:74273445-74273464 Msa0571570:CDS 35.0%
AAGACAAGGAAAACAAGTCA+AGG + chr4_1:74273459-74273478 Msa0571570:CDS 35.0%
!! GAACTTAGTTCTGACGAAAT+AGG + chr4_1:74273486-74273505 Msa0571570:CDS 35.0%
!! GTTGGTATCTACTGTTTTGA+GGG - chr4_1:74273550-74273569 None:intergenic 35.0%
!! CAGAAGGCCTTTTTATTTGA+GGG - chr4_1:74273572-74273591 None:intergenic 35.0%
TTGGCCAATGTTGAATACAA+AGG - chr4_1:74273652-74273671 None:intergenic 35.0%
TTTGTATTCAACATTGGCCA+AGG + chr4_1:74273651-74273670 Msa0571570:CDS 35.0%
TTGTATTCAACATTGGCCAA+GGG + chr4_1:74273652-74273671 Msa0571570:CDS 35.0%
AAAAGAGTGAGATTTACCCT+TGG - chr4_1:74273671-74273690 None:intergenic 35.0%
AACAGAAAGGCAAACTAGAA+AGG - chr4_1:74273709-74273728 None:intergenic 35.0%
TTGTGTGTTCTTAGTTTACC+AGG + chr4_1:74273769-74273788 Msa0571570:intron 35.0%
TAGAAAATGGCCAACCAATT+TGG + chr4_1:74273800-74273819 Msa0571570:CDS 35.0%
CATCAATTAGCCAAATTGGT+TGG - chr4_1:74273813-74273832 None:intergenic 35.0%
TCAGCATCAATTAGCCAAAT+TGG - chr4_1:74273817-74273836 None:intergenic 35.0%
GGCCTTTATAAACTCACAAA+AGG + chr4_1:74273963-74273982 Msa0571570:intron 35.0%
GACAGGTTCAAATGTGTTTA+AGG - chr4_1:74274086-74274105 None:intergenic 35.0%
TGTTAAGATAGGTCTTGCTT+TGG + chr4_1:74274248-74274267 Msa0571570:intron 35.0%
CAGGTTCCCAAATAGTAATA+AGG - chr4_1:74274322-74274341 None:intergenic 35.0%
! GTGTGTTTTCCTTTCATGAA+AGG + chr4_1:74274534-74274553 Msa0571570:CDS 35.0%
! GTGTTTTCCTTTCATGAAAG+GGG + chr4_1:74274536-74274555 Msa0571570:CDS 35.0%
TCAATAACCCCTTTCATGAA+AGG - chr4_1:74274546-74274565 None:intergenic 35.0%
TTCCAATACCTTCACACAAA+AGG - chr4_1:74274687-74274706 None:intergenic 35.0%
AATGCATTTGAGCTACCATT+AGG - chr4_1:74274902-74274921 None:intergenic 35.0%
AAACATTCATGGTTGAAAGC+TGG + chr4_1:74274945-74274964 Msa0571570:CDS 35.0%
TATGCAGTCACTTGAATTCA+AGG - chr4_1:74275011-74275030 None:intergenic 35.0%
!!! GATCCACTAAGCTCATTTTT+TGG - chr4_1:74275084-74275103 None:intergenic 35.0%
TAATGCCAATCTTCACTTAG+AGG - chr4_1:74275106-74275125 None:intergenic 35.0%
AAGCAATGACCAGTTAACAA+TGG + chr4_1:74275153-74275172 Msa0571570:CDS 35.0%
AGCAATGACCAGTTAACAAT+GGG + chr4_1:74275154-74275173 Msa0571570:CDS 35.0%
!! AGCTTTTGTGTTTGGAACAA+AGG + chr4_1:74275208-74275227 Msa0571570:CDS 35.0%
! AGATTTTGTTCGAAGTTCCA+CGG + chr4_1:74275287-74275306 Msa0571570:CDS 35.0%
! ACCATGTTTTGTCAGAAAGA+AGG + chr4_1:74275392-74275411 Msa0571570:CDS 35.0%
TCCTTCTTTCTGACAAAACA+TGG - chr4_1:74275396-74275415 None:intergenic 35.0%
! TTTTGTCAGAAAGAAGGAGA+AGG + chr4_1:74275398-74275417 Msa0571570:CDS 35.0%
TTTGTCAGAAAGAAGGAGAA+GGG + chr4_1:74275399-74275418 Msa0571570:CDS 35.0%
TAACAATGGGAAGAAACCTA+TGG + chr4_1:74275827-74275846 Msa0571570:CDS 35.0%
AGAAACCTATGGTGAAAAAG+AGG + chr4_1:74275838-74275857 Msa0571570:CDS 35.0%
GAGGAAAATTTGTGACATAG+AGG + chr4_1:74275857-74275876 Msa0571570:CDS 35.0%
ATGTGTTCAGATGCTTCAAA+AGG + chr4_1:74275894-74275913 Msa0571570:CDS 35.0%
AATGTCAGTATGAGTGACAA+TGG + chr4_1:74275936-74275955 Msa0571570:CDS 35.0%
!! ATATCCTTCCTGCTTTAGAA+GGG - chr4_1:74275983-74276002 None:intergenic 35.0%
! AATATCCTTCCTGCTTTAGA+AGG - chr4_1:74275984-74276003 None:intergenic 35.0%
AATCAACAGAAGAAGCTGAT+GGG + chr4_1:74276054-74276073 Msa0571570:CDS 35.0%
GGACTATAAGGACATTAAGT+TGG - chr4_1:74276289-74276308 None:intergenic 35.0%
! TGGTATTCTCATGGACTATA+AGG - chr4_1:74276301-74276320 None:intergenic 35.0%
!!! CTTTTTGTTGTTGCATTAGC+TGG - chr4_1:74276475-74276494 None:intergenic 35.0%
CAGCTAATGCAACAACAAAA+AGG + chr4_1:74276473-74276492 Msa0571570:CDS 35.0%
!! AAAACTTTGAAGCCACTTTC+TGG - chr4_1:74276513-74276532 None:intergenic 35.0%
!! TACCTATTGGTGATGTAACA+TGG + chr4_1:74276693-74276712 Msa0571570:three_prime_UTR 35.0%
GCACTTGTAAATTGGTAGAT+AGG + chr4_1:74276728-74276747 Msa0571570:three_prime_UTR 35.0%
!! ACTCAGATGTTGACTTGAGA+GGG - chr4_1:74272461-74272480 None:intergenic 40.0%
CTGATATGGCTACAAAAGTG+TGG - chr4_1:74272489-74272508 None:intergenic 40.0%
!! AATGGTGCCACAAAACATGA+AGG + chr4_1:74272679-74272698 Msa0571570:exon 40.0%
! AGTTGCTCCTTCATGTTTTG+TGG - chr4_1:74272689-74272708 None:intergenic 40.0%
!! TGGCAGTTAGAAGCATTCAA+TGG + chr4_1:74272714-74272733 Msa0571570:CDS 40.0%
TCTGAATCTGTTAACCAACC+AGG + chr4_1:74272755-74272774 Msa0571570:CDS 40.0%
CTGAATCTGTTAACCAACCA+GGG + chr4_1:74272756-74272775 Msa0571570:CDS 40.0%
AGTTTGTATCTTACCCTGGT+TGG - chr4_1:74272772-74272791 None:intergenic 40.0%
! GCTACTACTTGCTGCATTAA+AGG + chr4_1:74273086-74273105 Msa0571570:intron 40.0%
AACACCCTGAAAAATGGTCA+AGG - chr4_1:74273405-74273424 None:intergenic 40.0%
!!! ATTTTTCAGGGTGTTGAGCT+GGG + chr4_1:74273410-74273429 Msa0571570:intron 40.0%
AAGGAAAACAAGTCAAGGAG+TGG + chr4_1:74273464-74273483 Msa0571570:CDS 40.0%
!! GGTTGGTATCTACTGTTTTG+AGG - chr4_1:74273551-74273570 None:intergenic 40.0%
!! AGGCCTTTTTATTTGAGGGT+TGG - chr4_1:74273568-74273587 None:intergenic 40.0%
!! GCAGAAGGCCTTTTTATTTG+AGG - chr4_1:74273573-74273592 None:intergenic 40.0%
AGATACCGAGTGGTACTATT+TGG + chr4_1:74273617-74273636 Msa0571570:CDS 40.0%
GCAAACCAAATAGTACCACT+CGG - chr4_1:74273625-74273644 None:intergenic 40.0%
GAGAAACATATACCTTTGCG+AGG - chr4_1:74273873-74273892 None:intergenic 40.0%
! TCTCCGTCCCTTTTTATACA+CGG + chr4_1:74273942-74273961 Msa0571570:intron 40.0%
AATTGATGCACTCTGAGCAT+GGG - chr4_1:74274113-74274132 None:intergenic 40.0%
ATGAAAGGGGTTATTGAGCT+AGG + chr4_1:74274549-74274568 Msa0571570:CDS 40.0%
! ACCGATCACGTAAGTCTTTT+CGG + chr4_1:74274576-74274595 Msa0571570:intron 40.0%
ACCGAAAAGACTTACGTGAT+CGG - chr4_1:74274580-74274599 None:intergenic 40.0%
! ATTCTTCGCCTTTTGTGTGA+AGG + chr4_1:74274676-74274695 Msa0571570:intron 40.0%
ATGTAGCTCGAGCGTTAATA+GGG - chr4_1:74274769-74274788 None:intergenic 40.0%
AATGTAGCTCGAGCGTTAAT+AGG - chr4_1:74274770-74274789 None:intergenic 40.0%
ATTTGAGCTACCATTAGGAG+AGG - chr4_1:74274897-74274916 None:intergenic 40.0%
ATTTCTTCTGCTCCTAAGGT+TGG + chr4_1:74275040-74275059 Msa0571570:CDS 40.0%
TTGCAATCTTCTCCAACCTT+AGG - chr4_1:74275055-74275074 None:intergenic 40.0%
TGGATCCTCTAAGTGAAGAT+TGG + chr4_1:74275098-74275117 Msa0571570:CDS 40.0%
GCAATGACCAGTTAACAATG+GGG + chr4_1:74275155-74275174 Msa0571570:CDS 40.0%
AATGCATCCCCATTGTTAAC+TGG - chr4_1:74275165-74275184 None:intergenic 40.0%
AATTTCCAAAGGCCAAGACA+AGG + chr4_1:74275241-74275260 Msa0571570:CDS 40.0%
ATTTCCAAAGGCCAAGACAA+GGG + chr4_1:74275242-74275261 Msa0571570:CDS 40.0%
!! TGGTTTGCTTGAATCTCAAG+AGG + chr4_1:74275321-74275340 Msa0571570:CDS 40.0%
GAGGAGAATGACTATAGAGA+AGG + chr4_1:74275340-74275359 Msa0571570:CDS 40.0%
! TAGAGAAGGTACAAGACTAG+AGG + chr4_1:74275354-74275373 Msa0571570:CDS 40.0%
GAAGGGCAAAGCTAAATGAA+AGG + chr4_1:74275416-74275435 Msa0571570:CDS 40.0%
TGTTTGTGTCAGTGCTTCAT+AGG - chr4_1:74275533-74275552 None:intergenic 40.0%
! GCACTGATACTTCAGATTGA+AGG - chr4_1:74275595-74275614 None:intergenic 40.0%
TTTGTGACATAGAGGAGACA+AGG + chr4_1:74275865-74275884 Msa0571570:CDS 40.0%
CAATCAACAGAAGAAGCTGA+TGG + chr4_1:74276053-74276072 Msa0571570:CDS 40.0%
GTCCATGTTACATCACCAAT+AGG - chr4_1:74276698-74276717 None:intergenic 40.0%
!! GACTCAGATGTTGACTTGAG+AGG - chr4_1:74272462-74272481 None:intergenic 45.0%
! CATGAAGGAGCAACTTGCTT+TGG + chr4_1:74272694-74272713 Msa0571570:CDS 45.0%
CAGCTCAACACCCTGAAAAA+TGG - chr4_1:74273411-74273430 None:intergenic 45.0%
!!! CATTTTTCAGGGTGTTGAGC+TGG + chr4_1:74273409-74273428 Msa0571570:intron 45.0%
!!! TTTTTCAGGGTGTTGAGCTG+GGG + chr4_1:74273411-74273430 Msa0571570:intron 45.0%
CTGACGAAATAGGCTTACAG+AGG + chr4_1:74273496-74273515 Msa0571570:CDS 45.0%
TCGGTATCTGTGAGATCATC+AGG - chr4_1:74273606-74273625 None:intergenic 45.0%
ATGATCTCACAGATACCGAG+TGG + chr4_1:74273607-74273626 Msa0571570:CDS 45.0%
!!! CCATTTTCTAGAGCTCTTCC+TGG - chr4_1:74273790-74273809 None:intergenic 45.0%
!! CCAGGAAGAGCTCTAGAAAA+TGG + chr4_1:74273787-74273806 Msa0571570:CDS 45.0%
!! AGCTGGCTTGTTCTTTCTTC+TGG + chr4_1:74273900-74273919 Msa0571570:intron 45.0%
AGGCCGTGTATAAAAAGGGA+CGG - chr4_1:74273948-74273967 None:intergenic 45.0%
GAATTGATGCACTCTGAGCA+TGG - chr4_1:74274114-74274133 None:intergenic 45.0%
TGCTCAGAGTGCATCAATTC+AGG + chr4_1:74274114-74274133 Msa0571570:intron 45.0%
TCGTCTCAACTTTCAGACAG+TGG + chr4_1:74274512-74274531 Msa0571570:intron 45.0%
!! CGCCTTTTGTGTGAAGGTAT+TGG + chr4_1:74274682-74274701 Msa0571570:intron 45.0%
AACACAGCAACCTCTCCTAA+TGG + chr4_1:74274884-74274903 Msa0571570:CDS 45.0%
! GGTTGAAAGCTGGCAAGTTT+TGG + chr4_1:74274955-74274974 Msa0571570:CDS 45.0%
GTGTGCCTGTGAATTTCCAA+AGG + chr4_1:74275230-74275249 Msa0571570:CDS 45.0%
! CTTGGCCTTTGGAAATTCAC+AGG - chr4_1:74275238-74275257 None:intergenic 45.0%
! TTTTGTGAGGTCCCTTGTCT+TGG - chr4_1:74275256-74275275 None:intergenic 45.0%
ACAAGACTAGAGGCTGATGA+AGG + chr4_1:74275364-74275383 Msa0571570:CDS 45.0%
TTGTGTCAGTGCTTCATAGG+TGG - chr4_1:74275530-74275549 None:intergenic 45.0%
GAAGCTCAAAGAGAGTCAAC+AGG + chr4_1:74275729-74275748 Msa0571570:CDS 45.0%
! CACATCATGATATGGTGGAG+AGG + chr4_1:74275775-74275794 Msa0571570:CDS 45.0%
!! ATGAAGTGCCCTTCTAAAGC+AGG + chr4_1:74275972-74275991 Msa0571570:CDS 45.0%
!! CTTTGAAGCCACTTTCTGGA+GGG - chr4_1:74276509-74276528 None:intergenic 45.0%
!! ACTTTGAAGCCACTTTCTGG+AGG - chr4_1:74276510-74276529 None:intergenic 45.0%
!! CAGATGTTGACTTGAGAGGG+AGG - chr4_1:74272458-74272477 None:intergenic 50.0%
!!! TTTTCAGGGTGTTGAGCTGG+GGG + chr4_1:74273412-74273431 Msa0571570:intron 50.0%
TGGGGGGAAGGATACTACAA+TGG + chr4_1:74273429-74273448 Msa0571570:CDS 50.0%
! AGCAGCTGAGAGAGCTTTTC+AGG + chr4_1:74273523-74273542 Msa0571570:CDS 50.0%
!! TCAGGTGAAAGTGCTGCAGA+AGG - chr4_1:74273588-74273607 None:intergenic 50.0%
AAACCATCAGTGTGCATCCG+TGG - chr4_1:74275307-74275326 None:intergenic 50.0%
!! AGTGCCCTTCTAAAGCAGGA+AGG + chr4_1:74275976-74275995 Msa0571570:CDS 50.0%
!! TTTCAGGGTGTTGAGCTGGG+GGG + chr4_1:74273413-74273432 Msa0571570:intron 55.0%
CTCTGAGCATGGGAGAAGAC+AGG - chr4_1:74274103-74274122 None:intergenic 55.0%
! AGGTCCCTTGTCTTGGCCTT+TGG - chr4_1:74275249-74275268 None:intergenic 55.0%
GTTCCACGGATGCACACTGA+TGG + chr4_1:74275301-74275320 Msa0571570:CDS 55.0%
CAAGCAAGCCCTCCAGAAAG+TGG + chr4_1:74276498-74276517 Msa0571570:CDS 55.0%
TCTCTGTGTGACACGCCAGT+GGG - chr4_1:74276590-74276609 None:intergenic 55.0%
ATCTCTGTGTGACACGCCAG+TGG - chr4_1:74276591-74276610 None:intergenic 55.0%
TAGTCGCGCTCTCCTCGCAA+AGG + chr4_1:74273858-74273877 Msa0571570:CDS 60.0%
!! AGGGTGTTGAGCTGGGGGGA+AGG + chr4_1:74273417-74273436 Msa0571570:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 74272272 74276834 74272272 ID=Msa0571570;Name=Msa0571570
chr4_1 mRNA 74272272 74276834 74272272 ID=Msa0571570-mRNA-1;Parent=Msa0571570;Name=Msa0571570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=408|0.83|1|1|1|1|7|300|601
chr4_1 exon 74272272 74272777 74272272 ID=Msa0571570-mRNA-1:exon:25541;Parent=Msa0571570-mRNA-1
chr4_1 exon 74273419 74273673 74273419 ID=Msa0571570-mRNA-1:exon:25542;Parent=Msa0571570-mRNA-1
chr4_1 exon 74273783 74273879 74273783 ID=Msa0571570-mRNA-1:exon:25543;Parent=Msa0571570-mRNA-1
chr4_1 exon 74274528 74274584 74274528 ID=Msa0571570-mRNA-1:exon:25544;Parent=Msa0571570-mRNA-1
chr4_1 exon 74274698 74275477 74274698 ID=Msa0571570-mRNA-1:exon:25545;Parent=Msa0571570-mRNA-1
chr4_1 exon 74275657 74276103 74275657 ID=Msa0571570-mRNA-1:exon:25546;Parent=Msa0571570-mRNA-1
chr4_1 exon 74276463 74276834 74276463 ID=Msa0571570-mRNA-1:exon:25547;Parent=Msa0571570-mRNA-1
chr4_1 five_prime_UTR 74272272 74272679 74272272 ID=Msa0571570-mRNA-1:five_prime_utr;Parent=Msa0571570-mRNA-1
chr4_1 CDS 74272680 74272777 74272680 ID=Msa0571570-mRNA-1:cds;Parent=Msa0571570-mRNA-1
chr4_1 CDS 74273419 74273673 74273419 ID=Msa0571570-mRNA-1:cds;Parent=Msa0571570-mRNA-1
chr4_1 CDS 74273783 74273879 74273783 ID=Msa0571570-mRNA-1:cds;Parent=Msa0571570-mRNA-1
chr4_1 CDS 74274528 74274584 74274528 ID=Msa0571570-mRNA-1:cds;Parent=Msa0571570-mRNA-1
chr4_1 CDS 74274698 74275477 74274698 ID=Msa0571570-mRNA-1:cds;Parent=Msa0571570-mRNA-1
chr4_1 CDS 74275657 74276103 74275657 ID=Msa0571570-mRNA-1:cds;Parent=Msa0571570-mRNA-1
chr4_1 CDS 74276463 74276534 74276463 ID=Msa0571570-mRNA-1:cds;Parent=Msa0571570-mRNA-1
chr4_1 three_prime_UTR 74276535 74276834 74276535 ID=Msa0571570-mRNA-1:three_prime_utr;Parent=Msa0571570-mRNA-1
Gene Sequence

>Msa0571570

ATGGTGCCACAAAACATGAAGGAGCAACTTGCTTTGGCAGTTAGAAGCATTCAATGGAGCTATGTAATATTCTGGTCTGAATCTGTTAACCAACCAGGGGTGTTGAGCTGGGGGGAAGGATACTACAATGGAGAGATTAAGACAAGGAAAACAAGTCAAGGAGTGGAACTTAGTTCTGACGAAATAGGCTTACAGAGGAGTGAGCAGCTGAGAGAGCTTTTCAGGTCCCTCAAAACAGTAGATACCAACCCTCAAATAAAAAGGCCTTCTGCAGCACTTTCACCTGATGATCTCACAGATACCGAGTGGTACTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGCCAAGGTTTACCAGGAAGAGCTCTAGAAAATGGCCAACCAATTTGGCTAATTGATGCTGATTCTGTTGATTGCAAAGTGTTTAGTCGCGCTCTCCTCGCAAAGACAGTGGTGTGTTTTCCTTTCATGAAAGGGGTTATTGAGCTAGGCACAACCGATCACGTATTGGAAGATCTCAGTCTCATTCAACAGATCAAAACTTCTTTATCGAATAGTCTAAGCGTCGATGACCCTATTAACGCTCGAGCTACATTGAATTCGAGAAATAACGAAGGTGTTGCTTGTGTAGCATTTGATGATAATGATTATGATGTTGAATTAATTCCAGAAGTTGGATATGACATAATCAACACAGCAACCTCTCCTAATGGTAGCTCAAATGCATTACAAGCCAATCAACTACCAAATGAAACATTCATGGTTGAAAGCTGGCAAGTTTTGGATGATGATTTGAGCAACTGTGTTCATAACTCCTTGAATTCAAGTGACTGCATATCGCAAAATATTTCTTCTGCTCCTAAGGTTGGAGAAGATTGCAATAATAACCAAAAAATGAGCTTAGTGGATCCTCTAAGTGAAGATTGGCATTATCAGAAAATTCTTTCAGAACTTTTAAAAAGCAATGACCAGTTAACAATGGGGATGCATTTTCAAAACTTTCATCAAGAATCAAGCTTTTGTGTTTGGAACAAAGGTGTGCCTGTGAATTTCCAAAGGCCAAGACAAGGGACCTCACAAAAGTTATTGAAGAAGATTTTGTTCGAAGTTCCACGGATGCACACTGATGGTTTGCTTGAATCTCAAGAGGAGAATGACTATAGAGAAGGTACAAGACTAGAGGCTGATGAAGGTATGAACCATGTTTTGTCAGAAAGAAGGAGAAGGGCAAAGCTAAATGAAAGGTTTTTAACTCTTAGATCAATGGTTCCTTCAAATAGTAAGGATGACAAAGTTTCTATACTAGATGATGCAATTGAATACCTTAGAAAGCTTGAGAAAAAGATAAGAGAGTTGGAAGCTCAAAGAGAGTCAACAGGTATAGAGTCTAGAAGTAAAAAATCACATCATGATATGGTGGAGAGGACTTCTGATCATTACTATAATAACAAAACTAACAATGGGAAGAAACCTATGGTGAAAAAGAGGAAAATTTGTGACATAGAGGAGACAAGGAGAGAGATGTGTTCAGATGCTTCAAAAGGAAGTTCTAATAGGAATGTTAATGTCAGTATGAGTGACAATGGAGTTGTAATTGAAATGAAGTGCCCTTCTAAAGCAGGAAGGATATTAGAAATTATGGAAGCAGTTAACAATCTCAACATAGATTTTAATTCAGTTCAATCAACAGAAGAAGCTGATGGGAGTCTTCATCTAATCATTAAATCTAAGTTCAAAGGACCAGCTAATGCAACAACAAAAAGGATCAAGCAAGCCCTCCAGAAAGTGGCTTCAAAGTTTTGA
Protein sequence

>Msa0571570

MVPQNMKEQLALAVRSIQWSYVIFWSESVNQPGVLSWGEGYYNGEIKTRKTSQGVELSSDEIGLQRSEQLRELFRSLKTVDTNPQIKRPSAALSPDDLTDTEWYYLVCMSFVFNIGQGLPGRALENGQPIWLIDADSVDCKVFSRALLAKTVVCFPFMKGVIELGTTDHVLEDLSLIQQIKTSLSNSLSVDDPINARATLNSRNNEGVACVAFDDNDYDVELIPEVGYDIINTATSPNGSSNALQANQLPNETFMVESWQVLDDDLSNCVHNSLNSSDCISQNISSAPKVGEDCNNNQKMSLVDPLSEDWHYQKILSELLKSNDQLTMGMHFQNFHQESSFCVWNKGVPVNFQRPRQGTSQKLLKKILFEVPRMHTDGLLESQEENDYREGTRLEADEGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLRKLEKKIRELEAQRESTGIESRSKKSHHDMVERTSDHYYNNKTNNGKKPMVKKRKICDIEETRREMCSDASKGSSNRNVNVSMSDNGVVIEMKCPSKAGRILEIMEAVNNLNIDFNSVQSTEEADGSLHLIIKSKFKGPANATTKRIKQALQKVASKF*