Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571710 | XP_039685247.1 | 64.529 | 499 | 123 | 7 | 121 | 575 | 2 | 490 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571710 | sp|Q9LDD4|ARID2_ARATH | 29.140 | 477 | 277 | 14 | 145 | 575 | 12 | 473 | 3.36e-43 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571710 | A0A072U5F3 | 64.529 | 499 | 123 | 7 | 121 | 575 | 2 | 490 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0571710 | TR | ARID |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571710 | MtrunA17_Chr8g0387141 | 64.529 | 499 | 123 | 7 | 121 | 575 | 2 | 490 | 0.0 | 593 |
| Msa0571710 | MtrunA17_Chr8g0387181 | 62.500 | 528 | 116 | 9 | 122 | 575 | 3 | 522 | 0.0 | 590 |
| Msa0571710 | MtrunA17_Chr1g0186281 | 62.449 | 490 | 135 | 11 | 122 | 575 | 3 | 479 | 0.0 | 540 |
| Msa0571710 | MtrunA17_Chr1g0186261 | 61.290 | 496 | 134 | 12 | 122 | 575 | 3 | 482 | 0.0 | 528 |
| Msa0571710 | MtrunA17_Chr1g0186191 | 60.134 | 449 | 106 | 9 | 172 | 575 | 69 | 489 | 6.44e-161 | 472 |
| Msa0571710 | MtrunA17_Chr1g0186191 | 73.913 | 46 | 10 | 2 | 18 | 62 | 1 | 45 | 1.52e-14 | 76.6 |
| Msa0571710 | MtrunA17_Chr6g0479271 | 68.027 | 294 | 75 | 4 | 290 | 575 | 14 | 296 | 9.69e-123 | 364 |
| Msa0571710 | MtrunA17_Chr8g0387161 | 63.983 | 236 | 28 | 4 | 352 | 575 | 1 | 191 | 8.27e-90 | 279 |
| Msa0571710 | MtrunA17_Chr6g0453251 | 68.548 | 124 | 39 | 0 | 122 | 245 | 3 | 126 | 2.57e-50 | 169 |
| Msa0571710 | MtrunA17_Chr5g0420461 | 53.757 | 173 | 50 | 3 | 403 | 575 | 23 | 165 | 2.49e-46 | 161 |
| Msa0571710 | MtrunA17_Chr8g0387131 | 80.488 | 82 | 14 | 1 | 1 | 82 | 1 | 80 | 1.61e-39 | 142 |
| Msa0571710 | MtrunA17_Chr8g0387151 | 82.192 | 73 | 11 | 1 | 10 | 82 | 1 | 71 | 8.78e-38 | 134 |
| Msa0571710 | MtrunA17_Chr8g0348701 | 74.390 | 82 | 19 | 1 | 1 | 82 | 1 | 80 | 4.32e-37 | 135 |
| Msa0571710 | MtrunA17_Chr6g0479281 | 63.265 | 98 | 20 | 2 | 1 | 93 | 1 | 87 | 2.92e-33 | 122 |
| Msa0571710 | MtrunA17_Chr7g0248041 | 34.766 | 256 | 144 | 6 | 331 | 573 | 237 | 482 | 1.55e-32 | 132 |
| Msa0571710 | MtrunA17_Chr7g0248041 | 55.738 | 61 | 27 | 0 | 186 | 246 | 1 | 61 | 3.37e-11 | 66.2 |
| Msa0571710 | MtrunA17_Chr4g0059291 | 68.293 | 82 | 24 | 1 | 1 | 82 | 1 | 80 | 4.40e-32 | 122 |
| Msa0571710 | MtrunA17_Chr8g0348691 | 39.548 | 177 | 95 | 4 | 404 | 573 | 1 | 172 | 1.82e-31 | 122 |
| Msa0571710 | MtrunA17_Chr8g0387171 | 63.529 | 85 | 18 | 1 | 18 | 102 | 6 | 77 | 7.66e-30 | 112 |
| Msa0571710 | MtrunA17_Chr1g0186291 | 69.118 | 68 | 18 | 1 | 18 | 82 | 1 | 68 | 3.71e-27 | 107 |
| Msa0571710 | MtrunA17_Chr7g0241681 | 37.600 | 125 | 70 | 2 | 456 | 574 | 172 | 294 | 1.68e-17 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571710 | AT4G11400.2 | 29.140 | 477 | 277 | 14 | 145 | 575 | 12 | 473 | 3.42e-44 | 166 |
| Msa0571710 | AT4G11400.1 | 29.140 | 477 | 277 | 14 | 145 | 575 | 12 | 473 | 3.42e-44 | 166 |
| Msa0571710 | AT1G63800.1 | 73.171 | 82 | 20 | 1 | 1 | 82 | 1 | 80 | 1.05e-34 | 129 |
| Msa0571710 | AT5G41340.1 | 69.512 | 82 | 23 | 1 | 1 | 82 | 1 | 80 | 8.16e-33 | 124 |
| Msa0571710 | AT2G46040.3 | 33.065 | 248 | 112 | 8 | 343 | 571 | 244 | 456 | 1.26e-29 | 123 |
| Msa0571710 | AT2G46040.3 | 38.043 | 92 | 57 | 0 | 161 | 252 | 47 | 138 | 4.90e-11 | 65.9 |
| Msa0571710 | AT2G46040.1 | 33.065 | 248 | 112 | 8 | 343 | 571 | 244 | 456 | 1.26e-29 | 123 |
| Msa0571710 | AT2G46040.1 | 38.043 | 92 | 57 | 0 | 161 | 252 | 47 | 138 | 4.90e-11 | 65.9 |
| Msa0571710 | AT2G46040.2 | 33.065 | 248 | 112 | 8 | 343 | 571 | 258 | 470 | 1.65e-29 | 123 |
| Msa0571710 | AT2G46040.2 | 38.043 | 92 | 57 | 0 | 161 | 252 | 61 | 152 | 5.74e-11 | 65.9 |
| Msa0571710 | AT2G46030.5 | 64.198 | 81 | 27 | 1 | 1 | 81 | 1 | 79 | 3.49e-29 | 114 |
| Msa0571710 | AT2G46030.1 | 64.198 | 81 | 27 | 1 | 1 | 81 | 1 | 79 | 3.49e-29 | 114 |
| Msa0571710 | AT1G63800.2 | 73.846 | 65 | 17 | 0 | 18 | 82 | 1 | 65 | 7.03e-29 | 113 |
| Msa0571710 | AT2G46030.3 | 64.198 | 81 | 27 | 1 | 1 | 81 | 73 | 151 | 1.20e-28 | 115 |
| Msa0571710 | AT2G46030.4 | 64.179 | 67 | 24 | 0 | 15 | 81 | 16 | 82 | 4.16e-24 | 100 |
| Msa0571710 | AT2G46030.2 | 64.179 | 67 | 24 | 0 | 15 | 81 | 16 | 82 | 4.16e-24 | 100 |
| Msa0571710 | AT5G41340.2 | 76.923 | 39 | 9 | 0 | 44 | 82 | 7 | 45 | 9.56e-15 | 72.4 |
| Msa0571710 | AT5G04110.2 | 38.889 | 108 | 55 | 3 | 478 | 575 | 362 | 468 | 4.06e-14 | 75.5 |
| Msa0571710 | AT5G04110.4 | 38.889 | 108 | 55 | 3 | 478 | 575 | 361 | 467 | 4.07e-14 | 75.5 |
| Msa0571710 | AT5G04110.1 | 38.889 | 108 | 55 | 3 | 478 | 575 | 361 | 467 | 4.27e-14 | 75.5 |
| Msa0571710 | AT5G04110.3 | 38.889 | 108 | 55 | 3 | 478 | 575 | 361 | 467 | 4.27e-14 | 75.5 |
Find 132 sgRNAs with CRISPR-Local
Find 435 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCATCACCGTTAAAATTT+TGG | 0.110531 | 4_1:-74425069 | None:intergenic |
| CACCCTCACATTTGTTGTTT+TGG | 0.143855 | 4_1:-74425045 | None:intergenic |
| CCATTGGGGATTTGATAAAA+TGG | 0.170890 | 4_1:+74427545 | Msa0571710:CDS |
| CCCTTATAAGTCTCCTTCTA+TGG | 0.179225 | 4_1:+74422081 | Msa0571710:CDS |
| TTCATGCTCGCAAACGTAAA+AGG | 0.207801 | 4_1:+74425155 | Msa0571710:CDS |
| TTCTCCCTTGTGAAGGAAAA+AGG | 0.214256 | 4_1:+74424671 | Msa0571710:CDS |
| CAAGAGTGATGGTAATTTAT+TGG | 0.225995 | 4_1:+74425012 | Msa0571710:intron |
| TTCCATACACCTTCTTGATA+TGG | 0.282686 | 4_1:-74422031 | None:intergenic |
| CCCATAGAAGGAGACTTATA+AGG | 0.286364 | 4_1:-74422082 | None:intergenic |
| GGGTTTGGACCTTAATGTTT+TGG | 0.293428 | 4_1:+74424748 | Msa0571710:CDS |
| GGACTCTGTGATAGTTGATC+TGG | 0.306502 | 4_1:+74424727 | Msa0571710:CDS |
| GTGAAGAAGTTTCACTTTGA+TGG | 0.311091 | 4_1:+74427568 | Msa0571710:CDS |
| ACAAGATCTGTTTCAGTAGT+AGG | 0.318110 | 4_1:-74427405 | None:intergenic |
| GACCAAACTGAAGCTTGAAT+TGG | 0.322093 | 4_1:+74427509 | Msa0571710:CDS |
| TGCCAGCATGTGGAGCTCTT+TGG | 0.322807 | 4_1:-74422582 | None:intergenic |
| TGATTTGCAAGTACCTTTCT+TGG | 0.329744 | 4_1:-74422555 | None:intergenic |
| GTTAGAAATTTACCATGTTT+AGG | 0.342465 | 4_1:-74421457 | None:intergenic |
| CAGATTTGATTAAGCCATCT+TGG | 0.345613 | 4_1:+74427244 | Msa0571710:CDS |
| GCTCTTCAGGGCAGGCCTCA+AGG | 0.350824 | 4_1:+74422521 | Msa0571710:intron |
| TCACTGAAGCCAAAACATTA+AGG | 0.352287 | 4_1:-74424757 | None:intergenic |
| CTGTTGCTGTGATTCACGTT+CGG | 0.353377 | 4_1:+74427170 | Msa0571710:CDS |
| TACATGTCTCGGCGTTTGCT+TGG | 0.353722 | 4_1:-74421248 | None:intergenic |
| TAGTAAAAGTTTCAGTTTCA+AGG | 0.358549 | 4_1:-74424460 | None:intergenic |
| ACATGTCTCGGCGTTTGCTT+GGG | 0.359959 | 4_1:-74421247 | None:intergenic |
| CAAGAGGAGAATTGTATTAG+AGG | 0.371040 | 4_1:+74424587 | Msa0571710:CDS |
| ACTCACATTTCATCAACATT+AGG | 0.371368 | 4_1:-74422127 | None:intergenic |
| AATGGTTAGGCACACAAGTA+TGG | 0.372435 | 4_1:+74427361 | Msa0571710:CDS |
| GATTTGAGAATGAAAGGCTT+TGG | 0.375650 | 4_1:-74424907 | None:intergenic |
| TGTTGCTGTGATTCACGTTC+GGG | 0.377108 | 4_1:+74427171 | Msa0571710:CDS |
| TTCTCTCGCTTCTCTTTCGT+TGG | 0.378881 | 4_1:-74421217 | None:intergenic |
| TACTTGTGTGCCTAACCATT+TGG | 0.380699 | 4_1:-74427358 | None:intergenic |
| CTCTAATACAATTCTCCTCT+TGG | 0.380788 | 4_1:-74424586 | None:intergenic |
| TTTACTAAATTTCATGCAAA+TGG | 0.388491 | 4_1:+74424476 | Msa0571710:CDS |
| TTTGATGATGACCCATTGTT+TGG | 0.394625 | 4_1:-74425319 | None:intergenic |
| TATACTCCTCAGGATCAAAT+AGG | 0.404862 | 4_1:-74425225 | None:intergenic |
| TGTGATAGTTGATCTGGGTT+TGG | 0.407331 | 4_1:+74424733 | Msa0571710:CDS |
| GCAACAGCAGCGCGGTTTAA+CGG | 0.409057 | 4_1:-74427154 | None:intergenic |
| ACCCAATTCAAGCTTCAGTT+TGG | 0.418200 | 4_1:-74427511 | None:intergenic |
| CATTGGGGATTTGATAAAAT+GGG | 0.419613 | 4_1:+74427546 | Msa0571710:CDS |
| CCTTCACAAGGGAGAAAAGT+TGG | 0.420577 | 4_1:-74424664 | None:intergenic |
| CCTTATAAGTCTCCTTCTAT+GGG | 0.424263 | 4_1:+74422082 | Msa0571710:CDS |
| ACGTAAAAGGGAATCATTAT+CGG | 0.428409 | 4_1:+74425168 | Msa0571710:CDS |
| AAACTACACCAGTCCATTGC+GGG | 0.430784 | 4_1:-74427323 | None:intergenic |
| TTGTTAACAAAACCCATAGA+AGG | 0.431625 | 4_1:-74422094 | None:intergenic |
| TTTGATCCTGAGGAGTATAA+AGG | 0.441620 | 4_1:+74425229 | Msa0571710:CDS |
| AGATTTGATTAAGCCATCTT+GGG | 0.447011 | 4_1:+74427245 | Msa0571710:CDS |
| AGTTGAACCCACGACATTGC+AGG | 0.450458 | 4_1:+74422610 | Msa0571710:CDS |
| GACTTCATATTGCTGCAAAC+AGG | 0.450773 | 4_1:+74427487 | Msa0571710:CDS |
| GTCCATATCAAGAAGGTGTA+TGG | 0.453811 | 4_1:+74422029 | Msa0571710:CDS |
| ACACCGAGCATCACCGGCTC+AGG | 0.456593 | 4_1:-74424620 | None:intergenic |
| CCTTTCATTCTCAAATCTAA+AGG | 0.456822 | 4_1:+74424913 | Msa0571710:CDS |
| ACCAAACTGAAGCTTGAATT+GGG | 0.460774 | 4_1:+74427510 | Msa0571710:CDS |
| AGTAGAGAGTCACAAGTTCA+TGG | 0.463677 | 4_1:+74424414 | Msa0571710:intron |
| CTACTGAAACAGATCTTGTT+GGG | 0.465328 | 4_1:+74427409 | Msa0571710:CDS |
| TGGCCTCCTTTATACTCCTC+AGG | 0.466511 | 4_1:-74425235 | None:intergenic |
| AGTCACAAGTTCATGGCAAA+CGG | 0.467323 | 4_1:+74424421 | Msa0571710:CDS |
| GGACTGGTGTAGTTTATAAG+AGG | 0.473389 | 4_1:+74427331 | Msa0571710:CDS |
| ACTACTGAAACAGATCTTGT+TGG | 0.474059 | 4_1:+74427408 | Msa0571710:CDS |
| TGAGGATCAGCACTATCAAC+AGG | 0.477706 | 4_1:-74424518 | None:intergenic |
| CAAGTACCTTTCTTGGCGCT+CGG | 0.479503 | 4_1:-74422548 | None:intergenic |
| CGTGAAAAGCTTGTTTCTGT+AGG | 0.481232 | 4_1:+74427279 | Msa0571710:CDS |
| AGAGCTCCACATGCTGGCAA+TGG | 0.482177 | 4_1:+74422586 | Msa0571710:CDS |
| TTTCAGTTTCAAGGCGATCA+AGG | 0.482418 | 4_1:-74424451 | None:intergenic |
| GCGGAAGTCCCGCAATGGAC+TGG | 0.484951 | 4_1:+74427315 | Msa0571710:CDS |
| CAGTATCGAGAAAAGGGTTG+TGG | 0.485102 | 4_1:+74424705 | Msa0571710:CDS |
| CCATAGAAGGAGACTTATAA+GGG | 0.486416 | 4_1:-74422081 | None:intergenic |
| GACTTATAAGGGTAAACATC+AGG | 0.487381 | 4_1:-74422070 | None:intergenic |
| TCCATTGCGGGACTTCCGCT+TGG | 0.488954 | 4_1:-74427311 | None:intergenic |
| GTCACAAGTTCATGGCAAAC+GGG | 0.490789 | 4_1:+74424422 | Msa0571710:CDS |
| TTTATAAGAGGGACTCCAAA+TGG | 0.491097 | 4_1:+74427343 | Msa0571710:CDS |
| GACTCTGTGATAGTTGATCT+GGG | 0.491869 | 4_1:+74424728 | Msa0571710:CDS |
| CAGCATGTGGAGCTCTTTGG+AGG | 0.494974 | 4_1:-74422579 | None:intergenic |
| CCTTTAGATTTGAGAATGAA+AGG | 0.495133 | 4_1:-74424913 | None:intergenic |
| CCTTGGTGACCACAAGAGAC+AGG | 0.495344 | 4_1:-74427093 | None:intergenic |
| TGTGATTCACGTTCGGGTGA+CGG | 0.495447 | 4_1:+74427177 | Msa0571710:CDS |
| GAGCTCCACATGCTGGCAAT+GGG | 0.500477 | 4_1:+74422587 | Msa0571710:CDS |
| AGGCCTGAGCCGGTGATGCT+CGG | 0.501839 | 4_1:+74424617 | Msa0571710:CDS |
| TATGCTGCAGTATCGAGAAA+AGG | 0.502280 | 4_1:+74424698 | Msa0571710:CDS |
| AAGAGGGACTCCAAATGGTT+AGG | 0.503304 | 4_1:+74427348 | Msa0571710:CDS |
| TCATGCTCGCAAACGTAAAA+GGG | 0.504365 | 4_1:+74425156 | Msa0571710:CDS |
| AAGTGTAGCTGCAATGTTCA+AGG | 0.516681 | 4_1:+74427447 | Msa0571710:CDS |
| CTCCAAAGAGCTCCACATGC+TGG | 0.520131 | 4_1:+74422580 | Msa0571710:CDS |
| TGACTGACACCGAGCATCAC+CGG | 0.520466 | 4_1:-74424626 | None:intergenic |
| ATCTGAGTGATTTCGAAGGT+TGG | 0.523296 | 4_1:+74424798 | Msa0571710:CDS |
| TTCAGTTTCAAGGCGATCAA+GGG | 0.530697 | 4_1:-74424450 | None:intergenic |
| TTGACTCACCTGCAATGTCG+TGG | 0.537718 | 4_1:-74422618 | None:intergenic |
| CATTATCGGAAATGATAGAC+TGG | 0.537947 | 4_1:+74425182 | Msa0571710:CDS |
| AGCATGCAGAACCAAACAAT+GGG | 0.540970 | 4_1:+74425308 | Msa0571710:CDS |
| AGTATCGAGAAAAGGGTTGT+GGG | 0.542959 | 4_1:+74424706 | Msa0571710:CDS |
| ATGCTGCAGTATCGAGAAAA+GGG | 0.546828 | 4_1:+74424699 | Msa0571710:CDS |
| GGCTCACCGAGCGCCAAGAA+AGG | 0.552855 | 4_1:+74422542 | Msa0571710:CDS |
| AAACAATGGGTCATCATCAA+AGG | 0.556398 | 4_1:+74425321 | Msa0571710:CDS |
| AGGCAATGTGAGGCCTGAGC+CGG | 0.560985 | 4_1:+74424607 | Msa0571710:CDS |
| AGAGACAGGGTCCTCATACA+TGG | 0.562156 | 4_1:-74427079 | None:intergenic |
| CAATTTCATAAACCTAAACA+TGG | 0.567785 | 4_1:+74421445 | Msa0571710:CDS |
| GATGCATCCTGCCATGTATG+AGG | 0.570606 | 4_1:+74427068 | Msa0571710:CDS |
| AAAATTCGGCACTGGTGTCA+AGG | 0.572645 | 4_1:+74425108 | Msa0571710:CDS |
| CAACTCCCATTGCCAGCATG+TGG | 0.573714 | 4_1:-74422592 | None:intergenic |
| AGCATGAAATTCAAAAGAAG+CGG | 0.574033 | 4_1:-74425140 | None:intergenic |
| TATGAGGACCCTGTCTCTTG+TGG | 0.575545 | 4_1:+74427084 | Msa0571710:CDS |
| CAGCGCGGTTTAACGGAGAC+AGG | 0.576585 | 4_1:-74427147 | None:intergenic |
| ACAGGGTCCTCATACATGGC+AGG | 0.579227 | 4_1:-74427075 | None:intergenic |
| TGACTCACCTGCAATGTCGT+GGG | 0.581096 | 4_1:-74422617 | None:intergenic |
| TTGGTTAACCACAAGAGTGA+TGG | 0.581825 | 4_1:+74425001 | Msa0571710:intron |
| CATGTCTCGGCGTTTGCTTG+GGG | 0.583044 | 4_1:-74421246 | None:intergenic |
| TTGGCGCTCGGTGAGCCTTG+AGG | 0.583648 | 4_1:-74422536 | None:intergenic |
| CGAGAATCATCATCCCAAGA+TGG | 0.586176 | 4_1:-74427258 | None:intergenic |
| AACCAAAACAACAAATGTGA+GGG | 0.590681 | 4_1:+74425043 | Msa0571710:CDS |
| ACATTTCATCAACATTAGGA+TGG | 0.594673 | 4_1:-74422123 | None:intergenic |
| TCCAAGCGGAAGTCCCGCAA+TGG | 0.597080 | 4_1:+74427310 | Msa0571710:CDS |
| AGCATGTGGAGCTCTTTGGA+GGG | 0.598383 | 4_1:-74422578 | None:intergenic |
| AAAGTGGAGATGATCAATGA+TGG | 0.599096 | 4_1:+74421403 | Msa0571710:CDS |
| CCTGTCTCTTGTGGTCACCA+AGG | 0.603637 | 4_1:+74427093 | Msa0571710:CDS |
| AAACCAAAACAACAAATGTG+AGG | 0.612820 | 4_1:+74425042 | Msa0571710:CDS |
| GAAACAGATCTTGTTGGGAG+AGG | 0.612935 | 4_1:+74427414 | Msa0571710:CDS |
| AAGCATGCAGAACCAAACAA+TGG | 0.615428 | 4_1:+74425307 | Msa0571710:CDS |
| GACTGGTGTAGTTTATAAGA+GGG | 0.623361 | 4_1:+74427332 | Msa0571710:CDS |
| GCTTCGTCAAGTACATGTCT+CGG | 0.626335 | 4_1:-74421259 | None:intergenic |
| ATTACAGGTCCATATCAAGA+AGG | 0.630170 | 4_1:+74422022 | Msa0571710:intron |
| CTTGTTGGGAGAGGAAGACG+AGG | 0.636192 | 4_1:+74427423 | Msa0571710:CDS |
| AATACACCTATTTGATCCTG+AGG | 0.647150 | 4_1:+74425219 | Msa0571710:CDS |
| GAAGGCAAGAGATGTTCTGT+CGG | 0.647872 | 4_1:+74425279 | Msa0571710:CDS |
| CTTGGTGACCACAAGAGACA+GGG | 0.648969 | 4_1:-74427092 | None:intergenic |
| TGTAGGTCGTCGTTTCCAAG+CGG | 0.650107 | 4_1:+74427296 | Msa0571710:CDS |
| AAATGGCGATTGTCTTGTCG+AGG | 0.655256 | 4_1:+74424493 | Msa0571710:CDS |
| AAATATCTGAGTGATTTCGA+AGG | 0.658560 | 4_1:+74424794 | Msa0571710:CDS |
| TAAACTACACCAGTCCATTG+CGG | 0.658581 | 4_1:-74427324 | None:intergenic |
| GTTGATGACTGATTACAAAG+TGG | 0.659668 | 4_1:+74421387 | Msa0571710:CDS |
| AATTGAGATGTAGTGAAAGG+CGG | 0.666409 | 4_1:+74427124 | Msa0571710:CDS |
| GATCCTGAGGAGTATAAAGG+AGG | 0.670845 | 4_1:+74425232 | Msa0571710:CDS |
| ATTGTATTAGAGGCAATGTG+AGG | 0.692266 | 4_1:+74424597 | Msa0571710:CDS |
| GAATCACAGCAACAGCAGCG+CGG | 0.787980 | 4_1:-74427162 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTTTGTAATTTTAAAA+TGG | - | chr4_1:74422324-74422343 | None:intergenic | 10.0% |
| !!! | ACTATTTTGTAATTTTAAAT+TGG | - | chr4_1:74422862-74422881 | None:intergenic | 10.0% |
| !! | TATATTTGATAAAAATTAAC+GGG | + | chr4_1:74423402-74423421 | Msa0571710:intron | 10.0% |
| !!! | AAGATTTTGTAATTTTAAAA+TGG | - | chr4_1:74422324-74422343 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAATCAAACTT+GGG | - | chr4_1:74423655-74423674 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAATCAAACT+TGG | - | chr4_1:74423656-74423675 | None:intergenic | 10.0% |
| !! | AACTAATACATAAAAAAAAA+TGG | - | chr4_1:74424137-74424156 | None:intergenic | 10.0% |
| !! | TTAATATAATAAAGATATCA+GGG | + | chr4_1:74425600-74425619 | Msa0571710:intron | 10.0% |
| !!! | TTGCATTTTTATTTTTTTAA+AGG | + | chr4_1:74425990-74426009 | Msa0571710:intron | 10.0% |
| !!! | ATTTGTAATCTTTTTGTAAT+TGG | + | chr4_1:74421349-74421368 | Msa0571710:intron | 15.0% |
| !!! | TTTGTAATCTTTTTGTAATT+GGG | + | chr4_1:74421350-74421369 | Msa0571710:intron | 15.0% |
| !!! | ATTTTTAATAATGAAGTTCA+GGG | + | chr4_1:74422177-74422196 | Msa0571710:intron | 15.0% |
| !!! | ATTTTTATATTGTCTATACA+AGG | + | chr4_1:74422356-74422375 | Msa0571710:intron | 15.0% |
| !!! | TTTTTTTTATTGTTTTCCAA+GGG | + | chr4_1:74422689-74422708 | Msa0571710:intron | 15.0% |
| !!! | TTTTGAATAACTTTTTTGAT+AGG | - | chr4_1:74422787-74422806 | None:intergenic | 15.0% |
| !!! | CAAAGATTAATATATTTTGT+TGG | + | chr4_1:74423063-74423082 | Msa0571710:intron | 15.0% |
| !! | TAAATTCTAAATTATATACG+AGG | + | chr4_1:74423291-74423310 | Msa0571710:intron | 15.0% |
| !! | ATATTTGATAAAAATTAACG+GGG | + | chr4_1:74423403-74423422 | Msa0571710:intron | 15.0% |
| !! | ACATATGAAAATCTTATATA+TGG | - | chr4_1:74423559-74423578 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATCAAACTTG+GGG | - | chr4_1:74423654-74423673 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTATCATCGT+AGG | + | chr4_1:74423664-74423683 | Msa0571710:intron | 15.0% |
| !! | TAATACATAAAAAAAAATGG+CGG | - | chr4_1:74424134-74424153 | None:intergenic | 15.0% |
| !! | GTTAATATAATAAAGATATC+AGG | + | chr4_1:74425599-74425618 | Msa0571710:intron | 15.0% |
| !! | TGGAAAATAAAAATAACAAA+TGG | + | chr4_1:74426432-74426451 | Msa0571710:intron | 15.0% |
| !! | GGAAAATAAAAATAACAAAT+GGG | + | chr4_1:74426433-74426452 | Msa0571710:intron | 15.0% |
| !! | GTTATTACATAAAATACATA+GGG | - | chr4_1:74426795-74426814 | None:intergenic | 15.0% |
| !!! | ACAAATAAAATTTCATCTTT+TGG | - | chr4_1:74426994-74427013 | None:intergenic | 15.0% |
| !!! | GAAATTTTATTTGTATTATG+TGG | + | chr4_1:74427000-74427019 | Msa0571710:intron | 15.0% |
| !! | CAAAAAGATTACAAATTTAG+AGG | - | chr4_1:74421345-74421364 | None:intergenic | 20.0% |
| !! | TATAGAATCTATAGTACTAA+AGG | - | chr4_1:74421574-74421593 | None:intergenic | 20.0% |
| !! | AATTATAAGACATAATCCAT+AGG | - | chr4_1:74421646-74421665 | None:intergenic | 20.0% |
| !! | CAAAAATAAACACAAACTAA+AGG | - | chr4_1:74421771-74421790 | None:intergenic | 20.0% |
| !!! | AGTTATTCATTATTTTCCAA+GGG | + | chr4_1:74422147-74422166 | Msa0571710:intron | 20.0% |
| !!! | GATTTTTAATAATGAAGTTC+AGG | + | chr4_1:74422176-74422195 | Msa0571710:intron | 20.0% |
| !!! | ATTTAAAATGACAGTAAACA+AGG | - | chr4_1:74422267-74422286 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTATTGTTTTCCA+AGG | + | chr4_1:74422688-74422707 | Msa0571710:intron | 20.0% |
| !!! | CAAGTCTTGTATATTTTAAA+AGG | - | chr4_1:74422909-74422928 | None:intergenic | 20.0% |
| !! | AATAATGATAAAATCTAACC+TGG | - | chr4_1:74423020-74423039 | None:intergenic | 20.0% |
| !!! | TAGAATTTAGAATTTGAGTT+GGG | - | chr4_1:74423280-74423299 | None:intergenic | 20.0% |
| !!! | TTAGAATTTAGAATTTGAGT+TGG | - | chr4_1:74423281-74423300 | None:intergenic | 20.0% |
| !! | TATTTGATAAAAATTAACGG+GGG | + | chr4_1:74423404-74423423 | Msa0571710:intron | 20.0% |
| !! | TATTTCCTTAATCAAACTTA+GGG | - | chr4_1:74423617-74423636 | None:intergenic | 20.0% |
| !! | AAAAAAAAAATCAAACTTGG+GGG | - | chr4_1:74423653-74423672 | None:intergenic | 20.0% |
| !! | CTTTATAATGCTAAATACTA+GGG | - | chr4_1:74423760-74423779 | None:intergenic | 20.0% |
| !!! | ATGTCAAAAAATCATTTTGT+TGG | + | chr4_1:74423811-74423830 | Msa0571710:intron | 20.0% |
| !!! | TGTCAAAAAATCATTTTGTT+GGG | + | chr4_1:74423812-74423831 | Msa0571710:intron | 20.0% |
| !! | ATATTAGGCTAAAATTCAAA+AGG | - | chr4_1:74423952-74423971 | None:intergenic | 20.0% |
| !! | TGAAAATTATTGAGAATTGA+TGG | - | chr4_1:74424033-74424052 | None:intergenic | 20.0% |
| !! | CTGCTAATAAAAATATCAAA+TGG | + | chr4_1:74424180-74424199 | Msa0571710:intron | 20.0% |
| !!! | AATTGATAAAAGAGTATGAA+GGG | - | chr4_1:74424215-74424234 | None:intergenic | 20.0% |
| !!! | AAATTGATAAAAGAGTATGA+AGG | - | chr4_1:74424216-74424235 | None:intergenic | 20.0% |
| !! | TTTACTAAATTTCATGCAAA+TGG | + | chr4_1:74424476-74424495 | Msa0571710:CDS | 20.0% |
| !!! | TGTGTTTTGTCAATTTTTTA+CGG | + | chr4_1:74424559-74424578 | Msa0571710:CDS | 20.0% |
| !! | AAGAAAAGAGTTTCAAAAAT+TGG | + | chr4_1:74424837-74424856 | Msa0571710:CDS | 20.0% |
| !!! | TTATACATGATTTTACACAT+TGG | + | chr4_1:74425369-74425388 | Msa0571710:intron | 20.0% |
| !! | GCATTATAATGTACTTAATT+CGG | + | chr4_1:74425469-74425488 | Msa0571710:intron | 20.0% |
| !!! | TGATTTTGAATACTTGATTT+CGG | - | chr4_1:74426026-74426045 | None:intergenic | 20.0% |
| !! | CGTTATTACATAAAATACAT+AGG | - | chr4_1:74426796-74426815 | None:intergenic | 20.0% |
| !! | CTAAATTATCTATCAAACTA+TGG | - | chr4_1:74426885-74426904 | None:intergenic | 20.0% |
| ! | CAATTTCATAAACCTAAACA+TGG | + | chr4_1:74421445-74421464 | Msa0571710:CDS | 25.0% |
| ! | GTTAGAAATTTACCATGTTT+AGG | - | chr4_1:74421460-74421479 | None:intergenic | 25.0% |
| ! | TAAAGGAAGAACATTTCAAT+TGG | - | chr4_1:74421557-74421576 | None:intergenic | 25.0% |
| ! | ATATGTTTCAATTCTATGTG+TGG | + | chr4_1:74421591-74421610 | Msa0571710:intron | 25.0% |
| !! | TGTCAAGAAATAATTTGTGT+TGG | - | chr4_1:74421724-74421743 | None:intergenic | 25.0% |
| !! | GAGTTATTCATTATTTTCCA+AGG | + | chr4_1:74422146-74422165 | Msa0571710:intron | 25.0% |
| !! | ATTAAAAATCTTTTGTCCCT+TGG | - | chr4_1:74422166-74422185 | None:intergenic | 25.0% |
| !!! | AAGGAAGCTTTTTTTTTGAT+AGG | - | chr4_1:74422248-74422267 | None:intergenic | 25.0% |
| !! | TGTGTAGTTTTTATAAAGCT+TGG | + | chr4_1:74423211-74423230 | Msa0571710:intron | 25.0% |
| !! | GTGTAGTTTTTATAAAGCTT+GGG | + | chr4_1:74423212-74423231 | Msa0571710:intron | 25.0% |
| ! | ATTTGATAAAAATTAACGGG+GGG | + | chr4_1:74423405-74423424 | Msa0571710:intron | 25.0% |
| ! | CTATTTCCTTAATCAAACTT+AGG | - | chr4_1:74423618-74423637 | None:intergenic | 25.0% |
| ! | AAAAAAAAATCAAACTTGGG+GGG | - | chr4_1:74423652-74423671 | None:intergenic | 25.0% |
| ! | TAAATACTAGGGTTGTTAAT+TGG | - | chr4_1:74423749-74423768 | None:intergenic | 25.0% |
| ! | CCTTTATAATGCTAAATACT+AGG | - | chr4_1:74423761-74423780 | None:intergenic | 25.0% |
| ! | CCTAGTATTTAGCATTATAA+AGG | + | chr4_1:74423758-74423777 | Msa0571710:intron | 25.0% |
| ! | AAAAAAGTGAGCTGAATATT+AGG | - | chr4_1:74423967-74423986 | None:intergenic | 25.0% |
| ! | AAATTATTGAGAATTGATGG+TGG | - | chr4_1:74424030-74424049 | None:intergenic | 25.0% |
| ! | GACATAACATTAACATATAC+TGG | - | chr4_1:74424265-74424284 | None:intergenic | 25.0% |
| !! | TGTACTTTTGTATATGTTGA+TGG | - | chr4_1:74424329-74424348 | None:intergenic | 25.0% |
| ! | TAGTAAAAGTTTCAGTTTCA+AGG | - | chr4_1:74424463-74424482 | None:intergenic | 25.0% |
| ! | AAGAGTTTCAAAAATTGGAA+TGG | + | chr4_1:74424842-74424861 | Msa0571710:CDS | 25.0% |
| !! | ATTATGTTACTTCACTTACT+TGG | - | chr4_1:74424968-74424987 | None:intergenic | 25.0% |
| !! | CATAATTAAGCACATTGATT+TGG | + | chr4_1:74424982-74425001 | Msa0571710:intron | 25.0% |
| ! | GGTCAATAATAAAGATATCA+GGG | + | chr4_1:74425621-74425640 | Msa0571710:intron | 25.0% |
| ! | ATATAGATACACACATCAAT+TGG | - | chr4_1:74425815-74425834 | None:intergenic | 25.0% |
| ! | ATTGATGTGTGTATCTATAT+TGG | + | chr4_1:74425815-74425834 | Msa0571710:intron | 25.0% |
| ! | TAAGCAAAGAGAAAAAAAGA+CGG | - | chr4_1:74426099-74426118 | None:intergenic | 25.0% |
| !!! | TTTACACTGATTTGGAAAAT+AGG | + | chr4_1:74426130-74426149 | Msa0571710:intron | 25.0% |
| ! | ATTATCTATCAAACTATGGT+TGG | - | chr4_1:74426881-74426900 | None:intergenic | 25.0% |
| ! | AAAAATTGAGATGTAGTGAA+AGG | + | chr4_1:74427121-74427140 | Msa0571710:CDS | 25.0% |
| AGGGGAAAAAATTGATACAA+GGG | - | chr4_1:74421485-74421504 | None:intergenic | 30.0% | |
| AATGAAATTCCACACAAAGA+GGG | - | chr4_1:74421504-74421523 | None:intergenic | 30.0% | |
| ! | CTTTTATTCCAACTCATTAC+AGG | + | chr4_1:74422007-74422026 | Msa0571710:intron | 30.0% |
| TTGTTAACAAAACCCATAGA+AGG | - | chr4_1:74422097-74422116 | None:intergenic | 30.0% | |
| ACATTTCATCAACATTAGGA+TGG | - | chr4_1:74422126-74422145 | None:intergenic | 30.0% | |
| ACTCACATTTCATCAACATT+AGG | - | chr4_1:74422130-74422149 | None:intergenic | 30.0% | |
| TAATAAAGTCTGACCTGATT+AGG | - | chr4_1:74422454-74422473 | None:intergenic | 30.0% | |
| AACTCACATTGCATAACATT+AGG | - | chr4_1:74422671-74422690 | None:intergenic | 30.0% | |
| !!! | ACACCTAAAGAGTTTTAAGA+AGG | + | chr4_1:74422712-74422731 | Msa0571710:intron | 30.0% |
| CTTCCTTCTTAAAACTCTTT+AGG | - | chr4_1:74422718-74422737 | None:intergenic | 30.0% | |
| !!! | AGTTTTAAGAAGGAAGTTCA+GGG | + | chr4_1:74422722-74422741 | Msa0571710:intron | 30.0% |
| TGATAAAATCTAACCTGGTT+GGG | - | chr4_1:74423015-74423034 | None:intergenic | 30.0% | |
| ATGATAAAATCTAACCTGGT+TGG | - | chr4_1:74423016-74423035 | None:intergenic | 30.0% | |
| TAACTCAAGCTTATTAAACC+GGG | - | chr4_1:74423255-74423274 | None:intergenic | 30.0% | |
| CTAACTCAAGCTTATTAAAC+CGG | - | chr4_1:74423256-74423275 | None:intergenic | 30.0% | |
| TTTGATAAAAATTAACGGGG+GGG | + | chr4_1:74423406-74423425 | Msa0571710:intron | 30.0% | |
| CTGAACTTATAATTTCCCAA+AGG | - | chr4_1:74423432-74423451 | None:intergenic | 30.0% | |
| AAAGAAGGGGAATGAAATAA+AGG | + | chr4_1:74423840-74423859 | Msa0571710:intron | 30.0% | |
| ATCGCGAAAACAAATGATTA+AGG | - | chr4_1:74423918-74423937 | None:intergenic | 30.0% | |
| ACATTAACATATACTGGTGA+AGG | - | chr4_1:74424259-74424278 | None:intergenic | 30.0% | |
| ! | CATATACAAAAGTACAAGCT+AGG | + | chr4_1:74424333-74424352 | Msa0571710:intron | 30.0% |
| GAATTTGATCACAAAACTAG+AGG | - | chr4_1:74424376-74424395 | None:intergenic | 30.0% | |
| ! | CAAAACACAGATTTTTGTCT+AGG | - | chr4_1:74424548-74424567 | None:intergenic | 30.0% |
| !!! | ATTTTTTACGGTTTACCAAG+AGG | + | chr4_1:74424571-74424590 | Msa0571710:CDS | 30.0% |
| AAATATCTGAGTGATTTCGA+AGG | + | chr4_1:74424794-74424813 | Msa0571710:CDS | 30.0% | |
| AGTTTCAAAAATTGGAATGG+TGG | + | chr4_1:74424845-74424864 | Msa0571710:CDS | 30.0% | |
| GTTTCAAAAATTGGAATGGT+GGG | + | chr4_1:74424846-74424865 | Msa0571710:CDS | 30.0% | |
| ! | AGCTCTTTTTCTAGATCTAT+TGG | - | chr4_1:74424887-74424906 | None:intergenic | 30.0% |
| CCTTTAGATTTGAGAATGAA+AGG | - | chr4_1:74424916-74424935 | None:intergenic | 30.0% | |
| CCTTTCATTCTCAAATCTAA+AGG | + | chr4_1:74424913-74424932 | Msa0571710:CDS | 30.0% | |
| ATAAATTACCATCACTCTTG+TGG | - | chr4_1:74425012-74425031 | None:intergenic | 30.0% | |
| CAAGAGTGATGGTAATTTAT+TGG | + | chr4_1:74425012-74425031 | Msa0571710:intron | 30.0% | |
| AAACCAAAACAACAAATGTG+AGG | + | chr4_1:74425042-74425061 | Msa0571710:CDS | 30.0% | |
| AACCAAAACAACAAATGTGA+GGG | + | chr4_1:74425043-74425062 | Msa0571710:CDS | 30.0% | |
| ! | TACCATCACCGTTAAAATTT+TGG | - | chr4_1:74425072-74425091 | None:intergenic | 30.0% |
| GAGGATGACAATGAAAAATT+CGG | + | chr4_1:74425094-74425113 | Msa0571710:CDS | 30.0% | |
| AGCATGAAATTCAAAAGAAG+CGG | - | chr4_1:74425143-74425162 | None:intergenic | 30.0% | |
| ACGTAAAAGGGAATCATTAT+CGG | + | chr4_1:74425168-74425187 | Msa0571710:CDS | 30.0% | |
| GGGTCAATAATAAAGATATC+AGG | + | chr4_1:74425620-74425639 | Msa0571710:intron | 30.0% | |
| !! | CACATCAATTGGTATTGATT+GGG | - | chr4_1:74425804-74425823 | None:intergenic | 30.0% |
| !! | ACACATCAATTGGTATTGAT+TGG | - | chr4_1:74425805-74425824 | None:intergenic | 30.0% |
| !! | CATGATTTGCATTTTGTTGT+GGG | + | chr4_1:74425846-74425865 | Msa0571710:intron | 30.0% |
| GTGAATTGTGTGATTTAGTT+GGG | - | chr4_1:74425897-74425916 | None:intergenic | 30.0% | |
| TGTGAATTGTGTGATTTAGT+TGG | - | chr4_1:74425898-74425917 | None:intergenic | 30.0% | |
| ! | TTTTTACAAACCAGTTTGCA+CGG | - | chr4_1:74425955-74425974 | None:intergenic | 30.0% |
| GTTTGTAAAAATCCTGTCAA+TGG | + | chr4_1:74425964-74425983 | Msa0571710:intron | 30.0% | |
| AAAATGCAAAAACCATTGAC+AGG | - | chr4_1:74425979-74425998 | None:intergenic | 30.0% | |
| AAGCAAAGAGAAAAAAAGAC+GGG | - | chr4_1:74426098-74426117 | None:intergenic | 30.0% | |
| TTCCAAATCAGTGTAAAAAC+AGG | - | chr4_1:74426127-74426146 | None:intergenic | 30.0% | |
| TTTACACTTGACCTTGTAAA+TGG | - | chr4_1:74426400-74426419 | None:intergenic | 30.0% | |
| ATTTACAAGGTCAAGTGTAA+AGG | + | chr4_1:74426399-74426418 | Msa0571710:intron | 30.0% | |
| TAATTAGGACTACAAAGGTT+AGG | - | chr4_1:74426476-74426495 | None:intergenic | 30.0% | |
| TTAACATGTTCAACTTGAAC+TGG | + | chr4_1:74426521-74426540 | Msa0571710:intron | 30.0% | |
| TAACATGTTCAACTTGAACT+GGG | + | chr4_1:74426522-74426541 | Msa0571710:intron | 30.0% | |
| AAATCATGCAGTTCAAATTC+AGG | - | chr4_1:74426551-74426570 | None:intergenic | 30.0% | |
| TTGTAAAAGTCTTACTCTGA+CGG | - | chr4_1:74426588-74426607 | None:intergenic | 30.0% | |
| ! | ATCTCAATTTTTCTGTACCT+TGG | - | chr4_1:74427113-74427132 | None:intergenic | 30.0% |
| AGATTTGATTAAGCCATCTT+GGG | + | chr4_1:74427245-74427264 | Msa0571710:CDS | 30.0% | |
| !!! | GGTTTTGAATGATCTTTAAC+AGG | - | chr4_1:74427387-74427406 | None:intergenic | 30.0% |
| CATTGGGGATTTGATAAAAT+GGG | + | chr4_1:74427546-74427565 | Msa0571710:CDS | 30.0% | |
| ! | TAATTGGGTTGTTGTGAATC+AGG | + | chr4_1:74421365-74421384 | Msa0571710:intron | 35.0% |
| !! | GTTGATGACTGATTACAAAG+TGG | + | chr4_1:74421387-74421406 | Msa0571710:CDS | 35.0% |
| AAAGTGGAGATGATCAATGA+TGG | + | chr4_1:74421403-74421422 | Msa0571710:CDS | 35.0% | |
| GAGGGGAAAAAATTGATACA+AGG | - | chr4_1:74421486-74421505 | None:intergenic | 35.0% | |
| !!! | AATTTTTTCCCCTCTTTGTG+TGG | + | chr4_1:74421492-74421511 | Msa0571710:intron | 35.0% |
| ATGAAATTCCACACAAAGAG+GGG | - | chr4_1:74421503-74421522 | None:intergenic | 35.0% | |
| CAATGAAATTCCACACAAAG+AGG | - | chr4_1:74421505-74421524 | None:intergenic | 35.0% | |
| GGAAAATGAGCAAACAAGTA+AGG | - | chr4_1:74421674-74421693 | None:intergenic | 35.0% | |
| ! | TTTGCTCATTTTCCTCAATG+AGG | + | chr4_1:74421680-74421699 | Msa0571710:intron | 35.0% |
| AAATGTGTGTAAGTTGCAGA+GGG | + | chr4_1:74421791-74421810 | Msa0571710:intron | 35.0% | |
| TAACACAACTGTGACTTTAG+AGG | + | chr4_1:74421941-74421960 | Msa0571710:intron | 35.0% | |
| AACACAACTGTGACTTTAGA+GGG | + | chr4_1:74421942-74421961 | Msa0571710:intron | 35.0% | |
| ATTACAGGTCCATATCAAGA+AGG | + | chr4_1:74422022-74422041 | Msa0571710:intron | 35.0% | |
| TTCCATACACCTTCTTGATA+TGG | - | chr4_1:74422034-74422053 | None:intergenic | 35.0% | |
| GACTTATAAGGGTAAACATC+AGG | - | chr4_1:74422073-74422092 | None:intergenic | 35.0% | |
| CCATAGAAGGAGACTTATAA+GGG | - | chr4_1:74422084-74422103 | None:intergenic | 35.0% | |
| CCTTATAAGTCTCCTTCTAT+GGG | + | chr4_1:74422082-74422101 | Msa0571710:CDS | 35.0% | |
| CAAACGTAGGCAAATGTATT+AGG | - | chr4_1:74422415-74422434 | None:intergenic | 35.0% | |
| GGTATGCAATAATCAAACGT+AGG | - | chr4_1:74422428-74422447 | None:intergenic | 35.0% | |
| ! | AGTTTAAGTGAGTTGAGCTT+CGG | + | chr4_1:74422496-74422515 | Msa0571710:intron | 35.0% |
| ! | TGATTTGCAAGTACCTTTCT+TGG | - | chr4_1:74422558-74422577 | None:intergenic | 35.0% |
| CACATTGCATAACATTAGGA+TGG | - | chr4_1:74422667-74422686 | None:intergenic | 35.0% | |
| !!! | GAGTTTTAAGAAGGAAGTTC+AGG | + | chr4_1:74422721-74422740 | Msa0571710:intron | 35.0% |
| ! | ATCCAACACAATGAAAGTGT+TGG | - | chr4_1:74423148-74423167 | None:intergenic | 35.0% |
| AACACTTTCATTGTGTTGGA+TGG | + | chr4_1:74423147-74423166 | Msa0571710:intron | 35.0% | |
| ACACTTTCATTGTGTTGGAT+GGG | + | chr4_1:74423148-74423167 | Msa0571710:intron | 35.0% | |
| CGGTTTAATAAGCTTGAGTT+AGG | + | chr4_1:74423254-74423273 | Msa0571710:intron | 35.0% | |
| CAAACTTAGGGAGATGTATT+TGG | - | chr4_1:74423605-74423624 | None:intergenic | 35.0% | |
| CATCTCCCTAAGTTTGATTA+AGG | + | chr4_1:74423609-74423628 | Msa0571710:intron | 35.0% | |
| ! | TTGACTTGACCTAATCGATT+CGG | + | chr4_1:74423688-74423707 | Msa0571710:intron | 35.0% |
| TACTAGGGTTGTTAATTGGT+GGG | - | chr4_1:74423745-74423764 | None:intergenic | 35.0% | |
| ATACTAGGGTTGTTAATTGG+TGG | - | chr4_1:74423746-74423765 | None:intergenic | 35.0% | |
| ! | TTTTGTTGGGAGTTCAAAGA+AGG | + | chr4_1:74423825-74423844 | Msa0571710:intron | 35.0% |
| TTTGTTGGGAGTTCAAAGAA+GGG | + | chr4_1:74423826-74423845 | Msa0571710:intron | 35.0% | |
| ATGTATTAGTTACCAGCTAG+AGG | + | chr4_1:74424146-74424165 | Msa0571710:intron | 35.0% | |
| ! | TAAAAGAGTATGAAGGGTTG+TGG | - | chr4_1:74424209-74424228 | None:intergenic | 35.0% |
| ! | GATTTTTGTCTAGGTTTGTG+AGG | - | chr4_1:74424539-74424558 | None:intergenic | 35.0% |
| CTCTAATACAATTCTCCTCT+TGG | - | chr4_1:74424589-74424608 | None:intergenic | 35.0% | |
| CAAGAGGAGAATTGTATTAG+AGG | + | chr4_1:74424587-74424606 | Msa0571710:CDS | 35.0% | |
| ATTGTATTAGAGGCAATGTG+AGG | + | chr4_1:74424597-74424616 | Msa0571710:CDS | 35.0% | |
| TCACTGAAGCCAAAACATTA+AGG | - | chr4_1:74424760-74424779 | None:intergenic | 35.0% | |
| GATTTGAGAATGAAAGGCTT+TGG | - | chr4_1:74424910-74424929 | None:intergenic | 35.0% | |
| !!! | GAGGGTGTCCAAAATTTTAA+CGG | + | chr4_1:74425061-74425080 | Msa0571710:CDS | 35.0% |
| !! | GTCCAAAATTTTAACGGTGA+TGG | + | chr4_1:74425067-74425086 | Msa0571710:CDS | 35.0% |
| !! | TTTTAACGGTGATGGTAATG+AGG | + | chr4_1:74425075-74425094 | Msa0571710:CDS | 35.0% |
| CATTATCGGAAATGATAGAC+TGG | + | chr4_1:74425182-74425201 | Msa0571710:CDS | 35.0% | |
| AATACACCTATTTGATCCTG+AGG | + | chr4_1:74425219-74425238 | Msa0571710:CDS | 35.0% | |
| TATACTCCTCAGGATCAAAT+AGG | - | chr4_1:74425228-74425247 | None:intergenic | 35.0% | |
| ! | TTTGATCCTGAGGAGTATAA+AGG | + | chr4_1:74425229-74425248 | Msa0571710:CDS | 35.0% |
| GCATCTGAACAAAAAAGTCA+TGG | - | chr4_1:74425258-74425277 | None:intergenic | 35.0% | |
| !!! | CTTTTTTGTTCAGATGCTGA+AGG | + | chr4_1:74425261-74425280 | Msa0571710:CDS | 35.0% |
| !! | TTTGATGATGACCCATTGTT+TGG | - | chr4_1:74425322-74425341 | None:intergenic | 35.0% |
| AAACAATGGGTCATCATCAA+AGG | + | chr4_1:74425321-74425340 | Msa0571710:CDS | 35.0% | |
| !! | ATGTGAAAACATTCTGGTTC+AGG | - | chr4_1:74425413-74425432 | None:intergenic | 35.0% |
| CCATTCATGTGAAAACATTC+TGG | - | chr4_1:74425419-74425438 | None:intergenic | 35.0% | |
| ! | CCAGAATGTTTTCACATGAA+TGG | + | chr4_1:74425416-74425435 | Msa0571710:intron | 35.0% |
| !! | GCATGATTTGCATTTTGTTG+TGG | + | chr4_1:74425845-74425864 | Msa0571710:intron | 35.0% |
| CTTCAACGGTGATTCAAATT+TGG | - | chr4_1:74426050-74426069 | None:intergenic | 35.0% | |
| !!! | CACCTGTTTTTACACTGATT+TGG | + | chr4_1:74426122-74426141 | Msa0571710:intron | 35.0% |
| ! | TTGTAAAGGCATGTTCTCTT+TGG | - | chr4_1:74426214-74426233 | None:intergenic | 35.0% |
| ! | AAGTTTGCTCCCTTGTTAAT+TGG | + | chr4_1:74426232-74426251 | Msa0571710:intron | 35.0% |
| ! | AGTTTGCTCCCTTGTTAATT+GGG | + | chr4_1:74426233-74426252 | Msa0571710:intron | 35.0% |
| TTCCATGACCCAATTAACAA+GGG | - | chr4_1:74426244-74426263 | None:intergenic | 35.0% | |
| TTTCCATGACCCAATTAACA+AGG | - | chr4_1:74426245-74426264 | None:intergenic | 35.0% | |
| ACAGACCTAATAAAGTCTCT+CGG | - | chr4_1:74426358-74426377 | None:intergenic | 35.0% | |
| TAGGTCTGTATTACAAGATC+TGG | + | chr4_1:74426369-74426388 | Msa0571710:intron | 35.0% | |
| AGGTCTGTATTACAAGATCT+GGG | + | chr4_1:74426370-74426389 | Msa0571710:intron | 35.0% | |
| ! | ATCTGGGTTTTCCATTTACA+AGG | + | chr4_1:74426386-74426405 | Msa0571710:intron | 35.0% |
| AGTGTAAAGGAGAGATTATC+TGG | + | chr4_1:74426412-74426431 | Msa0571710:intron | 35.0% | |
| TACAAAGGTTAGGTATAACC+TGG | - | chr4_1:74426466-74426485 | None:intergenic | 35.0% | |
| AGTGCTAATTAGGACTACAA+AGG | - | chr4_1:74426481-74426500 | None:intergenic | 35.0% | |
| GAACTTGCCATGTTATTGTT+TGG | + | chr4_1:74426819-74426838 | Msa0571710:intron | 35.0% | |
| CAGATCTCCAAACAATAACA+TGG | - | chr4_1:74426829-74426848 | None:intergenic | 35.0% | |
| ! | ATCTTTTGGATCTTGTCTAC+TGG | - | chr4_1:74426980-74426999 | None:intergenic | 35.0% |
| AATTGAGATGTAGTGAAAGG+CGG | + | chr4_1:74427124-74427143 | Msa0571710:CDS | 35.0% | |
| CAGATTTGATTAAGCCATCT+TGG | + | chr4_1:74427244-74427263 | Msa0571710:CDS | 35.0% | |
| GACTGGTGTAGTTTATAAGA+GGG | + | chr4_1:74427332-74427351 | Msa0571710:CDS | 35.0% | |
| TTTATAAGAGGGACTCCAAA+TGG | + | chr4_1:74427343-74427362 | Msa0571710:CDS | 35.0% | |
| ACAAGATCTGTTTCAGTAGT+AGG | - | chr4_1:74427408-74427427 | None:intergenic | 35.0% | |
| ACTACTGAAACAGATCTTGT+TGG | + | chr4_1:74427408-74427427 | Msa0571710:CDS | 35.0% | |
| CTACTGAAACAGATCTTGTT+GGG | + | chr4_1:74427409-74427428 | Msa0571710:CDS | 35.0% | |
| ACCAAACTGAAGCTTGAATT+GGG | + | chr4_1:74427510-74427529 | Msa0571710:CDS | 35.0% | |
| ! | CCATTTTATCAAATCCCCAA+TGG | - | chr4_1:74427548-74427567 | None:intergenic | 35.0% |
| CCATTGGGGATTTGATAAAA+TGG | + | chr4_1:74427545-74427564 | Msa0571710:CDS | 35.0% | |
| GAAATGTGTGTAAGTTGCAG+AGG | + | chr4_1:74421790-74421809 | Msa0571710:intron | 40.0% | |
| ! | ACACAACTGTGACTTTAGAG+GGG | + | chr4_1:74421943-74421962 | Msa0571710:intron | 40.0% |
| GATATGGACCTGTAATGAGT+TGG | - | chr4_1:74422018-74422037 | None:intergenic | 40.0% | |
| ! | GTCCATATCAAGAAGGTGTA+TGG | + | chr4_1:74422029-74422048 | Msa0571710:CDS | 40.0% |
| CCCTTATAAGTCTCCTTCTA+TGG | + | chr4_1:74422081-74422100 | Msa0571710:CDS | 40.0% | |
| CCCATAGAAGGAGACTTATA+AGG | - | chr4_1:74422085-74422104 | None:intergenic | 40.0% | |
| AGTAGTCATGCTCGTTTCTA+GGG | - | chr4_1:74422209-74422228 | None:intergenic | 40.0% | |
| TAGTAGTCATGCTCGTTTCT+AGG | - | chr4_1:74422210-74422229 | None:intergenic | 40.0% | |
| ATTGCATACCTGACCTAATC+AGG | + | chr4_1:74422438-74422457 | Msa0571710:intron | 40.0% | |
| ! | GTTTAAGTGAGTTGAGCTTC+GGG | + | chr4_1:74422497-74422516 | Msa0571710:intron | 40.0% |
| ! | TTTAAGTGAGTTGAGCTTCG+GGG | + | chr4_1:74422498-74422517 | Msa0571710:intron | 40.0% |
| AAAACTCTTTAGGTGTCCCT+TGG | - | chr4_1:74422708-74422727 | None:intergenic | 40.0% | |
| CAAGCGTAGGAGAATGTATT+GGG | - | chr4_1:74422976-74422995 | None:intergenic | 40.0% | |
| TCAAGCGTAGGAGAATGTAT+TGG | - | chr4_1:74422977-74422996 | None:intergenic | 40.0% | |
| !! | CAACACAATGAAAGTGTTGG+CGG | - | chr4_1:74423145-74423164 | None:intergenic | 40.0% |
| TTCATTGTGTTGGATGGGAA+TGG | + | chr4_1:74423153-74423172 | Msa0571710:intron | 40.0% | |
| TATAGTCCCACATTGCTTAG+AGG | + | chr4_1:74423181-74423200 | Msa0571710:intron | 40.0% | |
| GCTTATTAAACCGGGTTGTA+AGG | - | chr4_1:74423247-74423266 | None:intergenic | 40.0% | |
| ! | TGACTTGACCTAATCGATTC+GGG | + | chr4_1:74423689-74423708 | Msa0571710:intron | 40.0% |
| !! | CTAATCGATTCGGGCTTTAT+CGG | + | chr4_1:74423698-74423717 | Msa0571710:intron | 40.0% |
| TTTATCGGACCGGACTAAAA+TGG | + | chr4_1:74423713-74423732 | Msa0571710:intron | 40.0% | |
| TTATCGGACCGGACTAAAAT+GGG | + | chr4_1:74423714-74423733 | Msa0571710:intron | 40.0% | |
| TTGTTGGGAGTTCAAAGAAG+GGG | + | chr4_1:74423827-74423846 | Msa0571710:intron | 40.0% | |
| ACAAAATACCCTGAGAGAAG+AGG | + | chr4_1:74423865-74423884 | Msa0571710:intron | 40.0% | |
| !! | GAATTGATGGTGGTACTAAC+TGG | - | chr4_1:74424020-74424039 | None:intergenic | 40.0% |
| CAAGGAAATGAAGGGTTTCA+TGG | - | chr4_1:74424105-74424124 | None:intergenic | 40.0% | |
| GGTGACAACAAGGAAATGAA+GGG | - | chr4_1:74424113-74424132 | None:intergenic | 40.0% | |
| AAAAAATGGCGGTGACAACA+AGG | - | chr4_1:74424123-74424142 | None:intergenic | 40.0% | |
| AGTAGAGAGTCACAAGTTCA+TGG | + | chr4_1:74424414-74424433 | Msa0571710:intron | 40.0% | |
| AGTCACAAGTTCATGGCAAA+CGG | + | chr4_1:74424421-74424440 | Msa0571710:CDS | 40.0% | |
| TTCAGTTTCAAGGCGATCAA+GGG | - | chr4_1:74424453-74424472 | None:intergenic | 40.0% | |
| TTTCAGTTTCAAGGCGATCA+AGG | - | chr4_1:74424454-74424473 | None:intergenic | 40.0% | |
| TTCTCCCTTGTGAAGGAAAA+AGG | + | chr4_1:74424671-74424690 | Msa0571710:CDS | 40.0% | |
| ! | TATGCTGCAGTATCGAGAAA+AGG | + | chr4_1:74424698-74424717 | Msa0571710:CDS | 40.0% |
| ! | ATGCTGCAGTATCGAGAAAA+GGG | + | chr4_1:74424699-74424718 | Msa0571710:CDS | 40.0% |
| ! | AGTATCGAGAAAAGGGTTGT+GGG | + | chr4_1:74424706-74424725 | Msa0571710:CDS | 40.0% |
| GACTCTGTGATAGTTGATCT+GGG | + | chr4_1:74424728-74424747 | Msa0571710:CDS | 40.0% | |
| TGTGATAGTTGATCTGGGTT+TGG | + | chr4_1:74424733-74424752 | Msa0571710:CDS | 40.0% | |
| ! | GGGTTTGGACCTTAATGTTT+TGG | + | chr4_1:74424748-74424767 | Msa0571710:CDS | 40.0% |
| ATCTGAGTGATTTCGAAGGT+TGG | + | chr4_1:74424798-74424817 | Msa0571710:CDS | 40.0% | |
| TTGGTTAACCACAAGAGTGA+TGG | + | chr4_1:74425001-74425020 | Msa0571710:intron | 40.0% | |
| !!! | CACCCTCACATTTGTTGTTT+TGG | - | chr4_1:74425048-74425067 | None:intergenic | 40.0% |
| GACAATGAAAAATTCGGCAC+TGG | + | chr4_1:74425100-74425119 | Msa0571710:CDS | 40.0% | |
| AAGCATGCAGAACCAAACAA+TGG | + | chr4_1:74425307-74425326 | Msa0571710:CDS | 40.0% | |
| AGCATGCAGAACCAAACAAT+GGG | + | chr4_1:74425308-74425327 | Msa0571710:CDS | 40.0% | |
| ! | CAGTTAGCAAGCTGAGATTT+TGG | - | chr4_1:74425562-74425581 | None:intergenic | 40.0% |
| AGTGCAGTTGCAGTTCTTAA+TGG | - | chr4_1:74425713-74425732 | None:intergenic | 40.0% | |
| ACACAATTCACATTCTGCTG+CGG | + | chr4_1:74425906-74425925 | Msa0571710:intron | 40.0% | |
| ! | GTGTAGCCTTAAAACGGATA+GGG | + | chr4_1:74425929-74425948 | Msa0571710:intron | 40.0% |
| AGTGTACTAGAGCTCTTCAA+CGG | - | chr4_1:74426064-74426083 | None:intergenic | 40.0% | |
| GCTCTAGTACACTATGTGTT+TGG | + | chr4_1:74426071-74426090 | Msa0571710:intron | 40.0% | |
| ACAAGGGAGCAAACTTGTAA+AGG | - | chr4_1:74426228-74426247 | None:intergenic | 40.0% | |
| AACAGCCTTTACCACTCATA+AGG | + | chr4_1:74426263-74426282 | Msa0571710:intron | 40.0% | |
| ! | TAACAAATGGGTTTGTGACC+AGG | + | chr4_1:74426445-74426464 | Msa0571710:intron | 40.0% |
| TGAGTCATAAGCAGTGCATA+AGG | - | chr4_1:74426763-74426782 | None:intergenic | 40.0% | |
| TTATGCACTGCTTATGACTC+AGG | + | chr4_1:74426762-74426781 | Msa0571710:intron | 40.0% | |
| ! | TCTGAAACTGTCTCCTTTAC+AGG | + | chr4_1:74427041-74427060 | Msa0571710:intron | 40.0% |
| !! | CGTGAAAAGCTTGTTTCTGT+AGG | + | chr4_1:74427279-74427298 | Msa0571710:CDS | 40.0% |
| TAAACTACACCAGTCCATTG+CGG | - | chr4_1:74427327-74427346 | None:intergenic | 40.0% | |
| ! | GGACTGGTGTAGTTTATAAG+AGG | + | chr4_1:74427331-74427350 | Msa0571710:CDS | 40.0% |
| TACTTGTGTGCCTAACCATT+TGG | - | chr4_1:74427361-74427380 | None:intergenic | 40.0% | |
| AATGGTTAGGCACACAAGTA+TGG | + | chr4_1:74427361-74427380 | Msa0571710:CDS | 40.0% | |
| AAGTGTAGCTGCAATGTTCA+AGG | + | chr4_1:74427447-74427466 | Msa0571710:CDS | 40.0% | |
| GACTTCATATTGCTGCAAAC+AGG | + | chr4_1:74427487-74427506 | Msa0571710:CDS | 40.0% | |
| GACCAAACTGAAGCTTGAAT+TGG | + | chr4_1:74427509-74427528 | Msa0571710:CDS | 40.0% | |
| ACCCAATTCAAGCTTCAGTT+TGG | - | chr4_1:74427514-74427533 | None:intergenic | 40.0% | |
| ! | TGGGTTCTGCATTTTACCAT+TGG | + | chr4_1:74427529-74427548 | Msa0571710:CDS | 40.0% |
| ! | GGGTTCTGCATTTTACCATT+GGG | + | chr4_1:74427530-74427549 | Msa0571710:CDS | 40.0% |
| ! | GGTTCTGCATTTTACCATTG+GGG | + | chr4_1:74427531-74427550 | Msa0571710:CDS | 40.0% |
| TTCTCTCGCTTCTCTTTCGT+TGG | - | chr4_1:74421220-74421239 | None:intergenic | 45.0% | |
| GCTTCGTCAAGTACATGTCT+CGG | - | chr4_1:74421262-74421281 | None:intergenic | 45.0% | |
| ! | CACAACTGTGACTTTAGAGG+GGG | + | chr4_1:74421944-74421963 | Msa0571710:intron | 45.0% |
| TTTAGAGGGGGAACTGAAGT+GGG | + | chr4_1:74421956-74421975 | Msa0571710:intron | 45.0% | |
| AAGTCTGACCTGATTAGGTC+AGG | - | chr4_1:74422449-74422468 | None:intergenic | 45.0% | |
| ! | TTAAGTGAGTTGAGCTTCGG+GGG | + | chr4_1:74422499-74422518 | Msa0571710:intron | 45.0% |
| GGTATGCGATAATCAAGCGT+AGG | - | chr4_1:74422989-74423008 | None:intergenic | 45.0% | |
| AAATCTAACCTGGTTGGGTC+AGG | - | chr4_1:74423010-74423029 | None:intergenic | 45.0% | |
| TGGAAATCCCGCTTTCATTG+CGG | + | chr4_1:74423083-74423102 | Msa0571710:intron | 45.0% | |
| GGCAACCAAATGTCGCAATT+AGG | - | chr4_1:74423113-74423132 | None:intergenic | 45.0% | |
| CGCCAACACTTTCATTGTGT+TGG | + | chr4_1:74423143-74423162 | Msa0571710:intron | 45.0% | |
| ATTGTGTTGGATGGGAATGG+TGG | + | chr4_1:74423156-74423175 | Msa0571710:intron | 45.0% | |
| TTGTGTTGGATGGGAATGGT+GGG | + | chr4_1:74423157-74423176 | Msa0571710:intron | 45.0% | |
| TCCCACATTGCTTAGAGGTA+TGG | + | chr4_1:74423186-74423205 | Msa0571710:intron | 45.0% | |
| GCCATACCTCTAAGCAATGT+GGG | - | chr4_1:74423190-74423209 | None:intergenic | 45.0% | |
| TGCCATACCTCTAAGCAATG+TGG | - | chr4_1:74423191-74423210 | None:intergenic | 45.0% | |
| CGATAAAGCCCGAATCGATT+AGG | - | chr4_1:74423700-74423719 | None:intergenic | 45.0% | |
| AAATACCCTGAGAGAAGAGG+AGG | + | chr4_1:74423868-74423887 | Msa0571710:intron | 45.0% | |
| AATACCCTGAGAGAAGAGGA+GGG | + | chr4_1:74423869-74423888 | Msa0571710:intron | 45.0% | |
| TAAACCCTCCTCTTCTCTCA+GGG | - | chr4_1:74423876-74423895 | None:intergenic | 45.0% | |
| TTAAACCCTCCTCTTCTCTC+AGG | - | chr4_1:74423877-74423896 | None:intergenic | 45.0% | |
| TCATGGCAGTGTGAAGAGAT+AGG | - | chr4_1:74424088-74424107 | None:intergenic | 45.0% | |
| CGGTGACAACAAGGAAATGA+AGG | - | chr4_1:74424114-74424133 | None:intergenic | 45.0% | |
| TAGTTACCAGCTAGAGGTCT+TGG | + | chr4_1:74424152-74424171 | Msa0571710:intron | 45.0% | |
| GTCACAAGTTCATGGCAAAC+GGG | + | chr4_1:74424422-74424441 | Msa0571710:CDS | 45.0% | |
| AAATGGCGATTGTCTTGTCG+AGG | + | chr4_1:74424493-74424512 | Msa0571710:CDS | 45.0% | |
| TGAGGATCAGCACTATCAAC+AGG | - | chr4_1:74424521-74424540 | None:intergenic | 45.0% | |
| CCTTCACAAGGGAGAAAAGT+TGG | - | chr4_1:74424667-74424686 | None:intergenic | 45.0% | |
| ! | CCAACTTTTCTCCCTTGTGA+AGG | + | chr4_1:74424664-74424683 | Msa0571710:CDS | 45.0% |
| TCCCTTGTGAAGGAAAAAGG+AGG | + | chr4_1:74424674-74424693 | Msa0571710:CDS | 45.0% | |
| ! | CCCTCCTTTTTCCTTCACAA+GGG | - | chr4_1:74424678-74424697 | None:intergenic | 45.0% |
| CCCTTGTGAAGGAAAAAGGA+GGG | + | chr4_1:74424675-74424694 | Msa0571710:CDS | 45.0% | |
| ! | ACCCTCCTTTTTCCTTCACA+AGG | - | chr4_1:74424679-74424698 | None:intergenic | 45.0% |
| ! | CAGTATCGAGAAAAGGGTTG+TGG | + | chr4_1:74424705-74424724 | Msa0571710:CDS | 45.0% |
| GGACTCTGTGATAGTTGATC+TGG | + | chr4_1:74424727-74424746 | Msa0571710:CDS | 45.0% | |
| !! | AAAATTCGGCACTGGTGTCA+AGG | + | chr4_1:74425108-74425127 | Msa0571710:CDS | 45.0% |
| ! | GATCCTGAGGAGTATAAAGG+AGG | + | chr4_1:74425232-74425251 | Msa0571710:CDS | 45.0% |
| GAAGGCAAGAGATGTTCTGT+CGG | + | chr4_1:74425279-74425298 | Msa0571710:CDS | 45.0% | |
| !! | CTCAGCTTGCTAACTGCTAT+AGG | + | chr4_1:74425566-74425585 | Msa0571710:intron | 45.0% |
| TGCAACTGCACTATTGAGCT+TGG | + | chr4_1:74425721-74425740 | Msa0571710:intron | 45.0% | |
| GTACAACTCGCATGTATCGT+AGG | - | chr4_1:74425757-74425776 | None:intergenic | 45.0% | |
| CACAATTCACATTCTGCTGC+GGG | + | chr4_1:74425907-74425926 | Msa0571710:intron | 45.0% | |
| ! | GGTGTAGCCTTAAAACGGAT+AGG | + | chr4_1:74425928-74425947 | Msa0571710:intron | 45.0% |
| CTCCCTTGTTAATTGGGTCA+TGG | + | chr4_1:74426239-74426258 | Msa0571710:intron | 45.0% | |
| CCTTGCCTTATGAGTGGTAA+AGG | - | chr4_1:74426271-74426290 | None:intergenic | 45.0% | |
| CCTTTACCACTCATAAGGCA+AGG | + | chr4_1:74426268-74426287 | Msa0571710:intron | 45.0% | |
| ATGCAACCTTGCCTTATGAG+TGG | - | chr4_1:74426277-74426296 | None:intergenic | 45.0% | |
| ! | CAACATCGCAGGATTAGCAT+AGG | - | chr4_1:74426308-74426327 | None:intergenic | 45.0% |
| TATTGCACACACAACATCGC+AGG | - | chr4_1:74426319-74426338 | None:intergenic | 45.0% | |
| CAGAGCCGAGAGACTTTATT+AGG | + | chr4_1:74426350-74426369 | Msa0571710:intron | 45.0% | |
| AGTCAGCTGCAGTGCTAATT+AGG | - | chr4_1:74426491-74426510 | None:intergenic | 45.0% | |
| AATTAGCACTGCAGCTGACT+TGG | + | chr4_1:74426491-74426510 | Msa0571710:intron | 45.0% | |
| GGATGCATCTTCACCTGTAA+AGG | - | chr4_1:74427057-74427076 | None:intergenic | 45.0% | |
| CTGTTGCTGTGATTCACGTT+CGG | + | chr4_1:74427170-74427189 | Msa0571710:CDS | 45.0% | |
| TGTTGCTGTGATTCACGTTC+GGG | + | chr4_1:74427171-74427190 | Msa0571710:CDS | 45.0% | |
| CGAGAATCATCATCCCAAGA+TGG | - | chr4_1:74427261-74427280 | None:intergenic | 45.0% | |
| AAACTACACCAGTCCATTGC+GGG | - | chr4_1:74427326-74427345 | None:intergenic | 45.0% | |
| AAGAGGGACTCCAAATGGTT+AGG | + | chr4_1:74427348-74427367 | Msa0571710:CDS | 45.0% | |
| GAAACAGATCTTGTTGGGAG+AGG | + | chr4_1:74427414-74427433 | Msa0571710:CDS | 45.0% | |
| !! | ATATATTTGATAAAAATTAA+CGG | + | chr4_1:74423401-74423420 | Msa0571710:intron | 5.0% |
| !!! | TTATGTATATTAATTATTTT+AGG | - | chr4_1:74425536-74425555 | None:intergenic | 5.0% |
| ACATGTCTCGGCGTTTGCTT+GGG | - | chr4_1:74421250-74421269 | None:intergenic | 50.0% | |
| TACATGTCTCGGCGTTTGCT+TGG | - | chr4_1:74421251-74421270 | None:intergenic | 50.0% | |
| CCTGCAACTGATCCTCATTG+AGG | - | chr4_1:74421695-74421714 | None:intergenic | 50.0% | |
| CCTCAATGAGGATCAGTTGC+AGG | + | chr4_1:74421692-74421711 | Msa0571710:intron | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr4_1:74421829-74421848 | Msa0571710:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | + | chr4_1:74421828-74421847 | Msa0571710:intron | 50.0% | |
| ! | CTTTAGAGGGGGAACTGAAG+TGG | + | chr4_1:74421955-74421974 | Msa0571710:intron | 50.0% |
| CAAGTACCTTTCTTGGCGCT+CGG | - | chr4_1:74422551-74422570 | None:intergenic | 50.0% | |
| AGCATGTGGAGCTCTTTGGA+GGG | - | chr4_1:74422581-74422600 | None:intergenic | 50.0% | |
| AGTTGAACCCACGACATTGC+AGG | + | chr4_1:74422610-74422629 | Msa0571710:CDS | 50.0% | |
| TGACTCACCTGCAATGTCGT+GGG | - | chr4_1:74422620-74422639 | None:intergenic | 50.0% | |
| TTGACTCACCTGCAATGTCG+TGG | - | chr4_1:74422621-74422640 | None:intergenic | 50.0% | |
| GAAGTTCAGGGTTCAAACGC+TGG | + | chr4_1:74422734-74422753 | Msa0571710:intron | 50.0% | |
| GGAAATCCCGCTTTCATTGC+GGG | + | chr4_1:74423084-74423103 | Msa0571710:intron | 50.0% | |
| !! | AAGTGTTGGCGGTTGCAAGA+AGG | - | chr4_1:74423134-74423153 | None:intergenic | 50.0% |
| GAAGCTCACACCTTACAACC+CGG | + | chr4_1:74423234-74423253 | Msa0571710:intron | 50.0% | |
| AAAATTAACGGGGGGGCCTT+TGG | + | chr4_1:74423413-74423432 | Msa0571710:intron | 50.0% | |
| AAATTAACGGGGGGGCCTTT+GGG | + | chr4_1:74423414-74423433 | Msa0571710:intron | 50.0% | |
| ATCAAACTTGGGGGGATGCA+CGG | - | chr4_1:74423644-74423663 | None:intergenic | 50.0% | |
| GATTGACCAAGACCTCTAGC+TGG | - | chr4_1:74424161-74424180 | None:intergenic | 50.0% | |
| TGGCCTCCTTTATACTCCTC+AGG | - | chr4_1:74425238-74425257 | None:intergenic | 50.0% | |
| TTGTGGGCGCAACCTTGAAA+TGG | + | chr4_1:74425862-74425881 | Msa0571710:intron | 50.0% | |
| ! | GCGCAACCTTGAAATGGACT+GGG | + | chr4_1:74425868-74425887 | Msa0571710:intron | 50.0% |
| ! | CTGCGGGTGTAGCCTTAAAA+CGG | + | chr4_1:74425923-74425942 | Msa0571710:intron | 50.0% |
| GATGCATCCTGCCATGTATG+AGG | + | chr4_1:74427068-74427087 | Msa0571710:CDS | 50.0% | |
| AGAGACAGGGTCCTCATACA+TGG | - | chr4_1:74427082-74427101 | None:intergenic | 50.0% | |
| TATGAGGACCCTGTCTCTTG+TGG | + | chr4_1:74427084-74427103 | Msa0571710:CDS | 50.0% | |
| ! | CTTGGTGACCACAAGAGACA+GGG | - | chr4_1:74427095-74427114 | None:intergenic | 50.0% |
| TGTGATTCACGTTCGGGTGA+CGG | + | chr4_1:74427177-74427196 | Msa0571710:CDS | 50.0% | |
| TGTAGGTCGTCGTTTCCAAG+CGG | + | chr4_1:74427296-74427315 | Msa0571710:CDS | 50.0% | |
| CATGTCTCGGCGTTTGCTTG+GGG | - | chr4_1:74421249-74421268 | None:intergenic | 55.0% | |
| CAACAGCTGCTGCTGACCTA+TGG | + | chr4_1:74421627-74421646 | Msa0571710:intron | 55.0% | |
| CAGCATGTGGAGCTCTTTGG+AGG | - | chr4_1:74422582-74422601 | None:intergenic | 55.0% | |
| CTCCAAAGAGCTCCACATGC+TGG | + | chr4_1:74422580-74422599 | Msa0571710:CDS | 55.0% | |
| TGCCAGCATGTGGAGCTCTT+TGG | - | chr4_1:74422585-74422604 | None:intergenic | 55.0% | |
| AGAGCTCCACATGCTGGCAA+TGG | + | chr4_1:74422586-74422605 | Msa0571710:CDS | 55.0% | |
| GAGCTCCACATGCTGGCAAT+GGG | + | chr4_1:74422587-74422606 | Msa0571710:CDS | 55.0% | |
| CAACTCCCATTGCCAGCATG+TGG | - | chr4_1:74422595-74422614 | None:intergenic | 55.0% | |
| ATCGCATACCTGACCCAACC+AGG | + | chr4_1:74422999-74423018 | Msa0571710:intron | 55.0% | |
| AATCCCGCTTTCATTGCGGG+CGG | + | chr4_1:74423087-74423106 | Msa0571710:intron | 55.0% | |
| GGCGGCCTAATTGCGACATT+TGG | + | chr4_1:74423105-74423124 | Msa0571710:intron | 55.0% | |
| ! | CGATTCGGGCTTTATCGGAC+CGG | + | chr4_1:74423703-74423722 | Msa0571710:intron | 55.0% |
| ! | GGGTTGTTAATTGGTGGGCC+AGG | - | chr4_1:74423740-74423759 | None:intergenic | 55.0% |
| TGACTGACACCGAGCATCAC+CGG | - | chr4_1:74424629-74424648 | None:intergenic | 55.0% | |
| GGCGCAACCTTGAAATGGAC+TGG | + | chr4_1:74425867-74425886 | Msa0571710:intron | 55.0% | |
| ! | GCACGGCCCTATCCGTTTTA+AGG | - | chr4_1:74425938-74425957 | None:intergenic | 55.0% |
| ACAGGGTCCTCATACATGGC+AGG | - | chr4_1:74427078-74427097 | None:intergenic | 55.0% | |
| ! | CCTTGGTGACCACAAGAGAC+AGG | - | chr4_1:74427096-74427115 | None:intergenic | 55.0% |
| CCTGTCTCTTGTGGTCACCA+AGG | + | chr4_1:74427093-74427112 | Msa0571710:CDS | 55.0% | |
| GCAACAGCAGCGCGGTTTAA+CGG | - | chr4_1:74427157-74427176 | None:intergenic | 55.0% | |
| GAATCACAGCAACAGCAGCG+CGG | - | chr4_1:74427165-74427184 | None:intergenic | 55.0% | |
| CTTGTTGGGAGAGGAAGACG+AGG | + | chr4_1:74427423-74427442 | Msa0571710:CDS | 55.0% | |
| TTGAGCTTCGGGGGCTCTTC+AGG | + | chr4_1:74422508-74422527 | Msa0571710:intron | 60.0% | |
| TGAGCTTCGGGGGCTCTTCA+GGG | + | chr4_1:74422509-74422528 | Msa0571710:intron | 60.0% | |
| TAGGCCGCCCGCAATGAAAG+CGG | - | chr4_1:74423094-74423113 | None:intergenic | 60.0% | |
| GGACCGGACTAAAATGGGCC+TGG | + | chr4_1:74423719-74423738 | Msa0571710:intron | 60.0% | |
| !! | GGGCCAGGCCCATTTTAGTC+CGG | - | chr4_1:74423725-74423744 | None:intergenic | 60.0% |
| AGGCAATGTGAGGCCTGAGC+CGG | + | chr4_1:74424607-74424626 | Msa0571710:CDS | 60.0% | |
| GGGCGACCCAGTCCATTTCA+AGG | - | chr4_1:74425877-74425896 | None:intergenic | 60.0% | |
| ACGGATAGGGCCGTGCAAAC+TGG | + | chr4_1:74425942-74425961 | Msa0571710:intron | 60.0% | |
| CAGCGCGGTTTAACGGAGAC+AGG | - | chr4_1:74427150-74427169 | None:intergenic | 60.0% | |
| TCCAAGCGGAAGTCCCGCAA+TGG | + | chr4_1:74427310-74427329 | Msa0571710:CDS | 60.0% | |
| TCCATTGCGGGACTTCCGCT+TGG | - | chr4_1:74427314-74427333 | None:intergenic | 60.0% | |
| GCTCTTCAGGGCAGGCCTCA+AGG | + | chr4_1:74422521-74422540 | Msa0571710:intron | 65.0% | |
| ! | TTGGCGCTCGGTGAGCCTTG+AGG | - | chr4_1:74422539-74422558 | None:intergenic | 65.0% |
| GGCTCACCGAGCGCCAAGAA+AGG | + | chr4_1:74422542-74422561 | Msa0571710:CDS | 65.0% | |
| AGGCCGCCCGCAATGAAAGC+GGG | - | chr4_1:74423093-74423112 | None:intergenic | 65.0% | |
| AGGCCTGAGCCGGTGATGCT+CGG | + | chr4_1:74424617-74424636 | Msa0571710:CDS | 65.0% | |
| !! | ACACCGAGCATCACCGGCTC+AGG | - | chr4_1:74424623-74424642 | None:intergenic | 65.0% |
| GCGGAAGTCCCGCAATGGAC+TGG | + | chr4_1:74427315-74427334 | Msa0571710:CDS | 65.0% | |
| CTTCGGGGGCTCTTCAGGGC+AGG | + | chr4_1:74422513-74422532 | Msa0571710:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 74421165 | 74427587 | 74421165 | ID=Msa0571710;Name=Msa0571710 |
| chr4_1 | mRNA | 74421165 | 74427587 | 74421165 | ID=Msa0571710-mRNA-1;Parent=Msa0571710;Name=Msa0571710-mRNA-1;_AED=0.39;_eAED=0.39;_QI=74|0.33|0.28|0.85|1|1|7|0|575 |
| chr4_1 | exon | 74421165 | 74421288 | 74421165 | ID=Msa0571710-mRNA-1:exon:25666;Parent=Msa0571710-mRNA-1 |
| chr4_1 | exon | 74421387 | 74421466 | 74421387 | ID=Msa0571710-mRNA-1:exon:25667;Parent=Msa0571710-mRNA-1 |
| chr4_1 | exon | 74422029 | 74422143 | 74422029 | ID=Msa0571710-mRNA-1:exon:25668;Parent=Msa0571710-mRNA-1 |
| chr4_1 | exon | 74422535 | 74422631 | 74422535 | ID=Msa0571710-mRNA-1:exon:25669;Parent=Msa0571710-mRNA-1 |
| chr4_1 | exon | 74424419 | 74424952 | 74424419 | ID=Msa0571710-mRNA-1:exon:25670;Parent=Msa0571710-mRNA-1 |
| chr4_1 | exon | 74425016 | 74425342 | 74425016 | ID=Msa0571710-mRNA-1:exon:25671;Parent=Msa0571710-mRNA-1 |
| chr4_1 | exon | 74427063 | 74427587 | 74427063 | ID=Msa0571710-mRNA-1:exon:25672;Parent=Msa0571710-mRNA-1 |
| chr4_1 | five_prime_UTR | 74421165 | 74421238 | 74421165 | ID=Msa0571710-mRNA-1:five_prime_utr;Parent=Msa0571710-mRNA-1 |
| chr4_1 | CDS | 74421239 | 74421288 | 74421239 | ID=Msa0571710-mRNA-1:cds;Parent=Msa0571710-mRNA-1 |
| chr4_1 | CDS | 74421387 | 74421466 | 74421387 | ID=Msa0571710-mRNA-1:cds;Parent=Msa0571710-mRNA-1 |
| chr4_1 | CDS | 74422029 | 74422143 | 74422029 | ID=Msa0571710-mRNA-1:cds;Parent=Msa0571710-mRNA-1 |
| chr4_1 | CDS | 74422535 | 74422631 | 74422535 | ID=Msa0571710-mRNA-1:cds;Parent=Msa0571710-mRNA-1 |
| chr4_1 | CDS | 74424419 | 74424952 | 74424419 | ID=Msa0571710-mRNA-1:cds;Parent=Msa0571710-mRNA-1 |
| chr4_1 | CDS | 74425016 | 74425342 | 74425016 | ID=Msa0571710-mRNA-1:cds;Parent=Msa0571710-mRNA-1 |
| chr4_1 | CDS | 74427063 | 74427587 | 74427063 | ID=Msa0571710-mRNA-1:cds;Parent=Msa0571710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
