AlfalfaGEDB | Msa0573080

M. sativa cultivar zhongmu-4 / Msa0573080

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573080	XP_013447273.1	99.758	414	1	0	1	414	1	414	0.0	869

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573080	sp\|Q9ZQ31\|STY13_ARATH	79.644	393	74	2	22	414	25	411	0.0	634

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573080	A0A072U637	99.758	414	1	0	1	414	1	414	0.0	869

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573080	MtrunA17_Chr8g0388891	94.686	414	1	1	1	414	1	393	0.0	813
Msa0573080	MtrunA17_Chr3g0090261	93.557	357	23	0	58	414	7	363	0.0	702
Msa0573080	MtrunA17_Chr3g0117731	52.612	268	127	0	121	388	45	312	5.55e-105	314
Msa0573080	MtrunA17_Chr4g0059121	52.075	265	127	0	124	388	49	313	7.40e-103	309
Msa0573080	MtrunA17_Chr4g0075541	51.866	268	129	0	121	388	75	342	9.34e-103	310
Msa0573080	MtrunA17_Chr4g0047201	49.091	275	138	1	119	391	186	460	5.83e-99	304
Msa0573080	MtrunA17_Chr2g0282321	48.727	275	139	1	119	391	147	421	8.66e-99	302
Msa0573080	MtrunA17_Chr4g0047191	48.148	270	138	1	124	391	35	304	2.91e-98	297
Msa0573080	MtrunA17_Chr4g0047211	48.148	270	138	1	124	391	30	299	3.32e-98	297
Msa0573080	MtrunA17_Chr5g0406251	47.212	269	137	3	126	394	288	551	1.35e-84	269

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573080	AT4G31170.7	78.218	404	80	4	13	414	15	412	0.0	647
Msa0573080	AT4G31170.6	78.218	404	80	4	13	414	15	412	0.0	647
Msa0573080	AT4G31170.5	78.218	404	80	4	13	414	15	412	0.0	647
Msa0573080	AT4G31170.1	78.218	404	80	4	13	414	15	412	0.0	647
Msa0573080	AT4G31170.2	78.218	404	80	4	13	414	15	412	0.0	647
Msa0573080	AT4G31170.3	78.218	404	80	4	13	414	15	412	0.0	647
Msa0573080	AT4G31170.8	78.218	404	80	4	13	414	15	412	0.0	647
Msa0573080	AT2G24360.1	79.644	393	74	2	22	414	25	411	0.0	634
Msa0573080	AT4G31170.9	76.014	296	63	4	13	306	15	304	1.81e-157	446
Msa0573080	AT4G31170.10	76.014	296	63	4	13	306	15	304	1.81e-157	446

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Find 155 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATCATTGGGCAAGAT+TGG	0.355736	4_1:+76120576	None:intergenic
AAAGTGGATGTATATAGCTT+TGG	0.363857	4_1:-76120693	Msa0573080:CDS
AACAAGCAACGGTGGAGGAT+CGG	0.531804	4_1:-76123053	Msa0573080:CDS
AACAATCATTGGGCAAGATT+GGG	0.433766	4_1:+76120577	None:intergenic
AACAATGTTGGGATGCTTCA+GGG	0.481874	4_1:+76122625	None:intergenic
AACACTGTCGATTGACATAT+TGG	0.323931	4_1:+76123087	None:intergenic
AACATAGACTGGAAAATATG+TGG	0.461728	4_1:-76120349	Msa0573080:three_prime_UTR
AAGAGAATGTCAATATCCCT+GGG	0.566592	4_1:+76120062	None:intergenic
AAGAGTGGACAATTGATTTG+AGG	0.480318	4_1:-76122817	Msa0573080:CDS
AAGCTTGTGGTAAAAGCCTT+GGG	0.498981	4_1:+76123120	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAATACTTAAGTCAACAC+AGG	-	chr4_1:76120206-76120225	Msa0573080:three_prime_UTR	30.0%
AGACATAAGAGAGAAAAAGA+CGG	+	chr4_1:76120398-76120417	None:intergenic	30.0%
GAAGAAATAGCAAAGTTTGA+AGG	-	chr4_1:76120995-76121014	Msa0573080:intron	30.0%
TATTCTTGTTGAGATCTATG+GGG	+	chr4_1:76121068-76121087	None:intergenic	30.0%
GTTATTCTTGTTGAGATCTA+TGG	+	chr4_1:76121070-76121089	None:intergenic	30.0%
TGCAACAGAATAGTTATCAT+TGG	+	chr4_1:76121286-76121305	None:intergenic	30.0%
TGATTTGAGGAAGCTAAATA+TGG	-	chr4_1:76121425-76121444	Msa0573080:intron	30.0%
GATTTGAGGAAGCTAAATAT+GGG	-	chr4_1:76121426-76121445	Msa0573080:intron	30.0%
ATTGTTACTGAGTATGCTAA+GGG	-	chr4_1:76121666-76121685	Msa0573080:intron	30.0%
ACTTGTCACCAAAAATCAAA+AGG	+	chr4_1:76121836-76121855	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	76119994	76124257	76119994	ID=Msa0573080;Name=Msa0573080
chr4_1	mRNA	76119994	76124257	76119994	ID=Msa0573080-mRNA-1;Parent=Msa0573080;Name=Msa0573080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=312\|1\|1\|1\|0.5\|0.33\|3\|413\|414
chr4_1	exon	76119994	76120746	76119994	ID=Msa0573080-mRNA-1:exon:26490;Parent=Msa0573080-mRNA-1
chr4_1	exon	76122305	76123287	76122305	ID=Msa0573080-mRNA-1:exon:26489;Parent=Msa0573080-mRNA-1
chr4_1	exon	76124024	76124257	76124024	ID=Msa0573080-mRNA-1:exon:26488;Parent=Msa0573080-mRNA-1
chr4_1	five_prime_UTR	76124024	76124257	76124024	ID=Msa0573080-mRNA-1:five_prime_utr;Parent=Msa0573080-mRNA-1
chr4_1	five_prime_UTR	76123210	76123287	76123210	ID=Msa0573080-mRNA-1:five_prime_utr;Parent=Msa0573080-mRNA-1
chr4_1	CDS	76122305	76123209	76122305	ID=Msa0573080-mRNA-1:cds;Parent=Msa0573080-mRNA-1
chr4_1	CDS	76120407	76120746	76120407	ID=Msa0573080-mRNA-1:cds;Parent=Msa0573080-mRNA-1
chr4_1	three_prime_UTR	76119994	76120406	76119994	ID=Msa0573080-mRNA-1:three_prime_utr;Parent=Msa0573080-mRNA-1

Gene Sequence

>Msa0573080

ATGTTGGACGGTGGCGCCAAGTTCCCCATAGATCTCAACAAGAATAACAACAACTTTTACGATTTCTCCCAAGGCTTTTACCACAAGCTTGGTGAGGGTACCAATATGTCAATCGACAGTGTTGGGAGCTTGCAAACAAGCAACGGTGGAGGATCGGTTGCAATGTCGATTGATAACAGCAGTGTTGGGTCCAATGATTCCCATACCCGCATGTTGGATCATCAAGGGTTGAAGAGGCGTGCCAATGATAACTATTCTGTTGCACACAGTGCCAATCGTCGGGGAAGAGTTACTCATGCATTGAGTGACGATGCTTTAGCTCAAGCACTGATGGACAATAGTTCTCCGACTGAGGGGCTTGAAAATTTTGAAGAGTGGACAATTGATTTGAGGAAGCTAAATATGGGTGAGGCTTTTGCTCAAGGAGCTTTTGGGAAACTCTACAGAGGTACTTACAATGGGGAGGATGTCGCTATCAAAATCTTGGAGAGGCCTGAAAACGATACATCAAAGGCTCAGTTGATGGAACAACAATTTCAACAGGAGGTTATGATGCTGGCTACCCTGAAGCATCCCAACATTGTTCGTTTCATAGGTGCATGCCGTAAACCTATGGTGTGGTGCATTGTTACTGAGTATGCTAAGGGTGGATCAGTTCGGCAGTTCTTAACCAAGCGCCAAAACCGATCAGTTCCCCTCAAACTAGCTGTCAAACAAGCTTTGGATGTTGCAAGAGGCATGGCATATGTTCACGGTCTGGGATTGATCCACAGGGACTTGAAATCTGACAACCTTTTGATTTTTGGTGACAAGTCAATCAAAATTGCTGACTTTGGAGTCGCCCGGATTGAGGTGCAAACTGAAGGAATGACTCCTGAGACTGGAACATACCGTTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACACAGAAAGTGGATGTATATAGCTTTGGGATTGTTCTCTGGGAGCTCATCACTGGTATGCTTCCATTTCAGAACATGACAGCAGTACAGGCAGCATTTGCAGTTGTCAACAGAAATGTCCGCCCAATCTTGCCCAATGATTGTTTGCCTGTTCTCCGTGAAATCATGACTAGGTGCTGGGATCCCAACCCCGATGTTAGGCCACCATTTGCTGAAATTGTAGCAATGCTTGAAAGTGCCGAGATTGAGGTCATGACAACAGTTCGGAAGGCCAGGTTCAGGTGCTGCATAACCCAACCAATGACGGCGGAGTGA

Protein sequence

>Msa0573080

MLDGGAKFPIDLNKNNNNFYDFSQGFYHKLGEGTNMSIDSVGSLQTSNGGGSVAMSIDNSSVGSNDSHTRMLDHQGLKRRANDNYSVAHSANRRGRVTHALSDDALAQALMDNSSPTEGLENFEEWTIDLRKLNMGEAFAQGAFGKLYRGTYNGEDVAIKILERPENDTSKAQLMEQQFQQEVMMLATLKHPNIVRFIGACRKPMVWCIVTEYAKGGSVRQFLTKRQNRSVPLKLAVKQALDVARGMAYVHGLGLIHRDLKSDNLLIFGDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNRNVRPILPNDCLPVLREIMTRCWDPNPDVRPPFAEIVAMLESAEIEVMTTVRKARFRCCITQPMTAE*