AlfalfaGEDB | Msa0573280

M. sativa cultivar zhongmu-4 / Msa0573280

KEGG: K14486
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009785 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573280	XP_003630611.1	96.077	1096	21	2	1	1074	1	1096	0.0	2165

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573280	sp\|Q6Z2W3\|ARFE_ORYSJ	60.623	546	163	12	22	522	35	573	0.0	626

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573280	G7LIV9	96.077	1096	21	2	1	1074	1	1096	0.0	2165

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TFs/TRs:

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Gene ID	Type	Classification
Msa0573280	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573280	MtrunA17_Chr8g0389081	96.080	1097	20	3	1	1074	1	1097	0.0	2162
Msa0573280	MtrunA17_Chr4g0070181	66.456	474	129	8	20	469	15	482	0.0	600
Msa0573280	MtrunA17_Chr2g0285461	56.319	451	162	9	14	436	6	449	6.12e-155	483
Msa0573280	MtrunA17_Chr2g0285461	46.243	173	78	3	892	1061	708	868	1.78e-34	142
Msa0573280	MtrunA17_Chr8g0376771	52.745	510	198	11	14	499	6	496	8.52e-155	483
Msa0573280	MtrunA17_Chr8g0376771	66.667	93	31	0	962	1054	781	873	1.80e-34	142
Msa0573280	MtrunA17_Chr3g0109391	58.124	437	153	9	28	438	23	455	2.65e-152	474
Msa0573280	MtrunA17_Chr3g0109391	64.773	88	31	0	963	1050	724	811	4.85e-31	131
Msa0573280	MtrunA17_Chr5g0433301	54.661	472	174	12	19	459	15	477	2.47e-148	464
Msa0573280	MtrunA17_Chr5g0433301	63.218	87	32	0	964	1050	717	803	1.99e-30	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0573280	AT5G20730.2	65.342	453	125	8	20	445	16	463	0.0	573
Msa0573280	AT5G20730.2	60.753	186	62	4	890	1074	974	1149	7.18e-56	212
Msa0573280	AT5G20730.3	65.198	454	125	9	20	445	16	464	0.0	568
Msa0573280	AT5G20730.3	60.773	181	60	4	890	1069	975	1145	1.39e-54	208
Msa0573280	AT5G20730.1	65.198	454	125	9	20	445	16	464	0.0	568
Msa0573280	AT5G20730.1	60.753	186	62	4	890	1074	975	1150	8.59e-56	212
Msa0573280	AT1G30330.3	54.316	475	170	11	28	468	22	483	2.67e-150	473
Msa0573280	AT1G30330.3	55.118	127	53	1	928	1054	766	888	1.46e-34	143
Msa0573280	AT1G30330.2	54.316	475	170	11	28	468	22	483	2.67e-150	473
Msa0573280	AT1G30330.2	55.118	127	53	1	928	1054	766	888	1.46e-34	143

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Find 324 sgRNAs with CRISPR-Local

Find 464 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAGCATACAAGTGGG+GGG	0.666743	4_1:+76396131	None:intergenic
AAACGCCACTTGCTTACAAC+CGG	0.479247	4_1:-76395812	Msa0573280:CDS
AAATCTTCTCTGCAGCACGG+CGG	0.672265	4_1:+76396155	None:intergenic
AAATTTGCCAGTGTAGAAGC+AGG	0.528558	4_1:+76391904	None:intergenic
AACCAAAGGCACAACAAGAC+TGG	0.412678	4_1:-76392870	Msa0573280:CDS
AACTGTTGATTAATATGATC+TGG	0.547585	4_1:+76393838	None:intergenic
AAGAATACAATGCCTTGGCT+TGG	0.490942	4_1:-76394372	Msa0573280:CDS
AAGACGGCGGCGAAATTGGC+CGG	0.531971	4_1:+76397242	None:intergenic
AAGGATCCCCAGGCTTTCCC+TGG	0.522760	4_1:-76394333	Msa0573280:CDS
AAGGCATTGTATTCTTGAAA+AGG	0.425491	4_1:+76394379	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATTAGATGGAAGAAAAGA+CGG	+	chr4_1:76391702-76391721	None:intergenic	30.0%
CTCTTTCATTTCCATAACTT+TGG	-	chr4_1:76391874-76391893	Msa0573280:three_prime_UTR	30.0%
TGAAGAAGAAACCAAAGTTA+TGG	+	chr4_1:76391888-76391907	None:intergenic	30.0%
AAAAATCCAGCATACATGTA+AGG	+	chr4_1:76392396-76392415	None:intergenic	30.0%
AACATATGAAATGGTGCTTA+CGG	+	chr4_1:76392543-76392562	None:intergenic	30.0%
TCAAACTACACATGTAAAGT+CGG	+	chr4_1:76392633-76392652	None:intergenic	30.0%
TTTACATGTGTAGTTTGACA+TGG	-	chr4_1:76392635-76392654	Msa0573280:intron	30.0%
AAAAATTAGCATACAAGTGG+GGG	+	chr4_1:76392798-76392817	None:intergenic	30.0%
TAGAACTTCAGAGTTTAATC+AGG	-	chr4_1:76392846-76392865	Msa0573280:CDS	30.0%
TAAACATACCACGGTATATA+TGG	+	chr4_1:76392960-76392979	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	76391582	76397365	76391582	ID=Msa0573280;Name=Msa0573280
chr4_1	mRNA	76391582	76397365	76391582	ID=Msa0573280-mRNA-1;Parent=Msa0573280;Name=Msa0573280-mRNA-1;_AED=0.09;_eAED=0.09;_QI=187\|0.92\|0.85\|1\|1\|1\|14\|476\|1074
chr4_1	exon	76391582	76392193	76391582	ID=Msa0573280-mRNA-1:exon:26748;Parent=Msa0573280-mRNA-1
chr4_1	exon	76392321	76392511	76392321	ID=Msa0573280-mRNA-1:exon:26747;Parent=Msa0573280-mRNA-1
chr4_1	exon	76392637	76394426	76392637	ID=Msa0573280-mRNA-1:exon:26746;Parent=Msa0573280-mRNA-1
chr4_1	exon	76394550	76394688	76394550	ID=Msa0573280-mRNA-1:exon:26745;Parent=Msa0573280-mRNA-1
chr4_1	exon	76394835	76394910	76394835	ID=Msa0573280-mRNA-1:exon:26744;Parent=Msa0573280-mRNA-1
chr4_1	exon	76395206	76395328	76395206	ID=Msa0573280-mRNA-1:exon:26743;Parent=Msa0573280-mRNA-1
chr4_1	exon	76395420	76395584	76395420	ID=Msa0573280-mRNA-1:exon:26742;Parent=Msa0573280-mRNA-1
chr4_1	exon	76395752	76395842	76395752	ID=Msa0573280-mRNA-1:exon:26741;Parent=Msa0573280-mRNA-1
chr4_1	exon	76395977	76396061	76395977	ID=Msa0573280-mRNA-1:exon:26740;Parent=Msa0573280-mRNA-1
chr4_1	exon	76396144	76396299	76396144	ID=Msa0573280-mRNA-1:exon:26739;Parent=Msa0573280-mRNA-1
chr4_1	exon	76396406	76396462	76396406	ID=Msa0573280-mRNA-1:exon:26738;Parent=Msa0573280-mRNA-1
chr4_1	exon	76396547	76396623	76396547	ID=Msa0573280-mRNA-1:exon:26737;Parent=Msa0573280-mRNA-1
chr4_1	exon	76396843	76396923	76396843	ID=Msa0573280-mRNA-1:exon:26736;Parent=Msa0573280-mRNA-1
chr4_1	exon	76397121	76397365	76397121	ID=Msa0573280-mRNA-1:exon:26735;Parent=Msa0573280-mRNA-1
chr4_1	five_prime_UTR	76397179	76397365	76397179	ID=Msa0573280-mRNA-1:five_prime_utr;Parent=Msa0573280-mRNA-1
chr4_1	CDS	76397121	76397178	76397121	ID=Msa0573280-mRNA-1:cds;Parent=Msa0573280-mRNA-1
chr4_1	CDS	76396843	76396923	76396843	ID=Msa0573280-mRNA-1:cds;Parent=Msa0573280-mRNA-1
chr4_1	CDS	76396547	76396623	76396547	ID=Msa0573280-mRNA-1:cds;Parent=Msa0573280-mRNA-1
chr4_1	CDS	76396406	76396462	76396406	ID=Msa0573280-mRNA-1:cds;Parent=Msa0573280-mRNA-1
chr4_1	CDS	76396144	76396299	76396144	ID=Msa0573280-mRNA-1:cds;Parent=Msa0573280-mRNA-1
chr4_1	CDS	76395977	76396061	76395977	ID=Msa0573280-mRNA-1:cds;Parent=Msa0573280-mRNA-1
chr4_1	CDS	76395752	76395842	76395752	ID=Msa0573280-mRNA-1:cds;Parent=Msa0573280-mRNA-1
chr4_1	CDS	76395420	76395584	76395420	ID=Msa0573280-mRNA-1:cds;Parent=Msa0573280-mRNA-1
chr4_1	CDS	76395206	76395328	76395206	ID=Msa0573280-mRNA-1:cds;Parent=Msa0573280-mRNA-1
chr4_1	CDS	76394835	76394910	76394835	ID=Msa0573280-mRNA-1:cds;Parent=Msa0573280-mRNA-1
chr4_1	CDS	76394550	76394688	76394550	ID=Msa0573280-mRNA-1:cds;Parent=Msa0573280-mRNA-1
chr4_1	CDS	76392637	76394426	76392637	ID=Msa0573280-mRNA-1:cds;Parent=Msa0573280-mRNA-1
chr4_1	CDS	76392321	76392511	76392321	ID=Msa0573280-mRNA-1:cds;Parent=Msa0573280-mRNA-1
chr4_1	CDS	76392058	76392193	76392058	ID=Msa0573280-mRNA-1:cds;Parent=Msa0573280-mRNA-1
chr4_1	three_prime_UTR	76391582	76392057	76391582	ID=Msa0573280-mRNA-1:three_prime_utr;Parent=Msa0573280-mRNA-1

Gene Sequence

>Msa0573280

ATGACCACCGCGCAGGAAGAAGGTCCCTCCGCCGCCATCGCCGCCGTAGCTCCCGCAGGAGAAGACAAGAATGACGGTGGCGTTAACAGTGAGCTATGGCAAGCTTGTGCTGGTCCTCTTGTCAATCTTCCTTTACCTGATGGGGATGTCCAAGTACCAAACTATTCCAATCTTCCTTCCAAGTTGCCTTGTACTCTTCACAGTCTCACCTTACATGCAGATCCAGACACAGACGAAGTATATGCCCGGATGACACTTCAGCCAGTGTCTTCCTTTGACATGGATGCCATATTAAGATCAGATATTTCTCTCAAGTCGAACAAGCCACAACCTGAGTTTTTCTGCAAGCAACTGACAGCTAGTGATACGAGTACTCATGGAGGTTTCTCTGTACCCCGCCGTGCTGCAGAGAAGATTTTCCCCCCACTTGATTTCTCAGTGCAACCTCCTGCTCAAGAACTTGTGGCAAAGGATTTGCATGGAAATGTTTGGAAGTTCCGCCATATATACCGTGGACAACCGAAACGCCACTTGCTTACAACCGGATGGAGTCTATTTATCAGTGGAAAGAGGCTTTTAGCTGGAGACTCTGTTTTATTTATACGAGATGAAAAGCAGCAGTTGCTTTTGGGTATCAGACGAGCAAACAGACAACCAACTAATTTATCTTCCTCAGTACTCTCAAGTGATAGTATGCACATTGGAATTCTGGCTGCAGCAGCTCATGCTAGTGCAAACAATAGTCCCTTCACCGTGTTTTATAATCCTAGGGCCAGTCCCTCAGAATTTGTTATTCCATTGGCCAAGTACTACAGGGCAATATACAGCCATCAAATATCACCTGGCATGCGCTTTAGAATGATGTTTGAAACAGAAGACTCAGGAACAAGAAGATATATGGGTACAGTTATTGGTGTTAGTGATCTGGATTCCGTGAGATGGAAAAACTCGCAGTGGCGAAATTTGCAGGTTGGTTGGGATGAAGCCACCGCTGGGGAAAGGCGAAGTAGGGTCTCAATCTGGGAAATTGAACCTGTTACTGCTCCATTTTTCATCTGTCCACCTCCATTCTTCAGACCCAAGAGACCAAGACAACCCGGAATGCCTGACGATGAGTCATTTGATTTCAGTAACCTTTTCAAGAATACAATGCCTTGGCTTGGTGATGATATGTGTATGAAGGATCCCCAGGCTTTCCCTGGCATGAGCTTAGCTCAATGGATGAACATACAGCAAAATCCTGCTATGGCTAGCTCATTGCAACCAAATCATGTGCCTTCCATGCCTGCATCTGTTGTACAAAATCTTCCTGGATCCGATATTGCCCATCAATTGGGATTTTCCACTCAACAAATCTCTCAATCAAACAATGTAGCCTTCACTGCACCGGGGATGCCTCAGATGCTACCATCCACTTCTAGTGGATTGGGAGCAGTCATGCAGCCAGAACAACATTCTAGACAGAACTTGGCATATCAAACTCTACCGCAGAGTCAAGTTCAGACCCAACTTAATCCCCAGAGTATTGTCCAAACGAACAATATTCTTCAATCACAACAACCGTCCATTCAAAACAATCAACTCCATAGAAGTCTCTCTCAGAACCCACTGCAACAGTTTCAACAGACTATAATTGGGCAAAACCAACCGCAAAATATGATTAGGCCCACTATGCCAGATCATATTAATCAACAGTTACATATGTCTGATAATCAGGTTCGGCTTCAGTTGTTACAGAAGCTTCAACAGCAACAACAGACACTCTTGTCTCAGCAATCTGCATTGCAGCAGCCTGCTCAGATTATTCAAAACCATGACCAGCAGAGGCAAGAATTAGATGTCACACACAACTCTAGGGCAATAACTCCCCGTCAAGTGTTTGAAATTCCTCATACGCTTCAAAACTCACTGCTCGAGGCTAATTCTATGAACCATCAGATGACAGATCATAGTAGCCAGAACAATGTTCAGTTCTCCCATCCAGCCAAGCAACAAAAGCTTCAACATCAACAACAGCAAACACAACCCGGCTCACTGTCTAAAATGTCTAGTCATGTTGGACTTCCTTCTGCAACTACTGCTAATCAGTTATCTGCTTCCGGTTGCAGTATACGGACTGTAGCAACTGGGACAGTGCCATCGGTAAATACTGATAATGCTCCATCTTGTTCCACTTCGCCTTCCACAAATAACTGTGTTGGCGCGCTTCCTCCAGTGACCACATCCCAGATCCTTATGAGCACAATAGGGGATGACGTGGCTCAGTCTGCTGCGACCATCTTGAGTCAAAGTTCTAATGCAAATATGGTAAAATATGCACAGCCAAATTATGATGTTAAGCCTTGTTTAAACATTTCCGAAAATCACAACCCAGTGAATTTTTACCCTCAGACTTGCTTGAATGGTGCTGCTATCCAGACAGATTGTTTGGATACGTCGTCTTCTTCAACTTCAGTTTGCCTTTCTCAGAGTGATTCACGCTTTCATCAGGCTGACAAACCGTTATCTTACTATCCCCAGTCAATGTTTTCTAGAGACAACATTCAAAACTTGGAAGTTCAGGCTGATGCTAGGTGCAATGTTGCATATGGCAATAGCATGAATGGGCAAATGAGAATGCCACTGAATCTAGATTCTACGGTAACCAAAGGCACAACAAGACTGGGCAAGGATTTGTCAAATGATTTCTCTTCGGGAGGCTTGCTTGGGGGCTATGAAAATAACGGTGATGCCCAGCCAGAACTTTCATCTTCCATGGTTTCACAAACATGGGGAGTCCCTGATATGACCTTTAATTCGATTGATTCCACCATAAATGATAGTGGTTTCTTGGATAGTGGTCCATGGGCTCCGCCGCCGCCGCCACATCAATTTCAACGGATTAGAACATATACCAAGGTATATAAACGCGGAGCTGTGGGAAGGTCCATAGACATAACAAGATATTCAGGTTACGATGAGCTTAAACATGATCTGGCTCGTAGGTTTGGTATCGAGGGACAACTAGAGGATCGACAACGAGTAGGTTGGAAACTTGTTTATGTAGATCATGAAAATGATGTTCTGCTAGTGGGAGATGACCCTTGGGAGGAGTTTGTCAATTGTGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTTCAACAGATGAGCTTAGATGGAGATTTTGGCAATGGTGGCCTTCCAAGACAGGCCAGTAGCAGCTCTGATGGCGGGATTGCTTAA

Protein sequence

>Msa0573280

MTTAQEEGPSAAIAAVAPAGEDKNDGGVNSELWQACAGPLVNLPLPDGDVQVPNYSNLPSKLPCTLHSLTLHADPDTDEVYARMTLQPVSSFDMDAILRSDISLKSNKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDFSVQPPAQELVAKDLHGNVWKFRHIYRGQPKRHLLTTGWSLFISGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHASANNSPFTVFYNPRASPSEFVIPLAKYYRAIYSHQISPGMRFRMMFETEDSGTRRYMGTVIGVSDLDSVRWKNSQWRNLQVGWDEATAGERRSRVSIWEIEPVTAPFFICPPPFFRPKRPRQPGMPDDESFDFSNLFKNTMPWLGDDMCMKDPQAFPGMSLAQWMNIQQNPAMASSLQPNHVPSMPASVVQNLPGSDIAHQLGFSTQQISQSNNVAFTAPGMPQMLPSTSSGLGAVMQPEQHSRQNLAYQTLPQSQVQTQLNPQSIVQTNNILQSQQPSIQNNQLHRSLSQNPLQQFQQTIIGQNQPQNMIRPTMPDHINQQLHMSDNQVRLQLLQKLQQQQQTLLSQQSALQQPAQIIQNHDQQRQELDVTHNSRAITPRQVFEIPHTLQNSLLEANSMNHQMTDHSSQNNVQFSHPAKQQKLQHQQQQTQPGSLSKMSSHVGLPSATTANQLSASGCSIRTVATGTVPSVNTDNAPSCSTSPSTNNCVGALPPVTTSQILMSTIGDDVAQSAATILSQSSNANMVKYAQPNYDVKPCLNISENHNPVNFYPQTCLNGAAIQTDCLDTSSSSTSVCLSQSDSRFHQADKPLSYYPQSMFSRDNIQNLEVQADARCNVAYGNSMNGQMRMPLNLDSTVTKGTTRLGKDLSNDFSSGGLLGGYENNGDAQPELSSSMVSQTWGVPDMTFNSIDSTINDSGFLDSGPWAPPPPPHQFQRIRTYTKVYKRGAVGRSIDITRYSGYDELKHDLARRFGIEGQLEDRQRVGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPRQASSSSDGGIA*