AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0573990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0573990 MtrunA17_Chr8g0390211 93.632 424 2 1 1 399 1 424 0.0 814
Msa0573990 MtrunA17_Chr6g0486611 74.883 426 78 5 1 399 1 424 0.0 643
Msa0573990 MtrunA17_Chr3g0140071 57.275 433 148 6 1 399 1 430 1.03e-161 461
Msa0573990 MtrunA17_Chr4g0071031 63.435 361 105 3 1 335 1 360 5.42e-161 460
Msa0573990 MtrunA17_Chr1g0166821 60.154 389 121 5 1 360 2 385 3.76e-160 458
Msa0573990 MtrunA17_Chr1g0146151 55.116 430 151 6 1 397 1 421 1.32e-159 455
Msa0573990 MtrunA17_Chr2g0329981 59.137 394 125 6 1 360 1 392 1.48e-159 457
Msa0573990 MtrunA17_Chr1g0183631 70.805 298 62 1 1 273 1 298 5.11e-157 450
Msa0573990 MtrunA17_Chr8g0342821 70.805 298 63 1 1 274 1 298 2.71e-156 449
Msa0573990 MtrunA17_Chr1g0187571 60.638 376 106 6 1 341 2 370 1.30e-155 447
Msa0573990 MtrunA17_Chr7g0261501 69.697 297 65 1 1 272 1 297 9.35e-154 442
Msa0573990 MtrunA17_Chr2g0299661 52.809 445 150 7 1 398 1 432 2.89e-150 433
Msa0573990 MtrunA17_Chr1g0167261 56.215 354 110 4 1 327 2 337 2.36e-136 394
Msa0573990 MtrunA17_Chr1g0213321 36.332 289 142 7 2 252 109 393 6.07e-45 164
Msa0573990 MtrunA17_Chr7g0214531 34.354 294 148 6 2 253 27 317 2.25e-44 162
Msa0573990 MtrunA17_Chr1g0146301 35.125 279 143 6 5 248 118 393 1.32e-43 161
Msa0573990 MtrunA17_Chr3g0140431 35.484 279 142 6 5 248 32 307 2.82e-42 156
Msa0573990 MtrunA17_Chr7g0253211 35.154 293 144 7 2 252 314 602 3.43e-42 158
Msa0573990 MtrunA17_Chr8g0340491 31.915 282 145 5 9 248 128 404 1.87e-38 146
Msa0573990 MtrunA17_Chr1g0205931 27.619 210 118 6 9 188 55 260 5.56e-12 67.4
Msa0573990 MtrunA17_Chr4g0072831 27.830 212 117 7 7 211 8 190 5.91e-11 63.2
Msa0573990 MtrunA17_Chr5g0428031 27.686 242 118 9 7 211 7 228 5.91e-11 63.9
Msa0573990 MtrunA17_Chr2g0304111 27.189 217 120 8 3 189 17 225 9.87e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0573990 AT4G28880.3 68.322 423 90 5 1 390 1 412 0.0 583
Msa0573990 AT4G28880.2 68.322 423 90 5 1 390 1 412 0.0 583
Msa0573990 AT4G28880.1 68.322 423 90 5 1 390 1 412 0.0 583
Msa0573990 AT4G28880.4 68.322 423 90 5 1 390 1 412 0.0 583
Msa0573990 AT4G28860.1 67.529 425 89 8 1 390 1 411 0.0 563
Msa0573990 AT4G28860.2 72.207 367 65 4 1 334 1 363 0.0 543
Msa0573990 AT5G57015.1 67.296 318 73 2 1 287 1 318 7.27e-157 449
Msa0573990 AT1G72710.1 64.516 341 96 2 1 316 1 341 2.88e-156 449
Msa0573990 AT4G26100.1 64.095 337 90 4 1 308 1 335 5.16e-155 445
Msa0573990 AT3G23340.1 54.245 424 151 6 1 395 1 410 4.78e-154 442
Msa0573990 AT2G19470.1 66.557 305 77 1 1 280 1 305 9.18e-152 436
Msa0573990 AT5G44100.1 68.013 297 70 1 1 272 1 297 1.03e-151 437
Msa0573990 AT5G44100.2 68.013 297 70 1 1 272 1 297 1.03e-151 437
Msa0573990 AT1G03930.1 67.340 297 72 1 1 272 1 297 1.26e-151 437
Msa0573990 AT4G28540.1 67.450 298 72 1 1 273 5 302 2.48e-150 434
Msa0573990 AT5G43320.1 52.511 438 162 7 1 394 1 436 6.01e-150 433
Msa0573990 AT4G14340.1 53.118 433 156 8 1 398 7 427 4.68e-148 427
Msa0573990 AT1G04440.1 59.331 359 107 5 1 321 1 358 6.90e-148 427
Msa0573990 AT5G43320.2 68.013 297 70 1 1 272 1 297 4.03e-147 422
Msa0573990 AT5G43320.3 68.013 297 70 1 1 272 1 297 4.03e-147 422
Msa0573990 AT4G14340.2 62.848 323 89 3 1 293 7 328 1.36e-145 418
Msa0573990 AT3G23340.2 51.651 424 148 7 1 395 1 396 2.20e-141 409
Msa0573990 AT4G08800.1 59.375 288 72 3 1 269 1 262 4.55e-121 352
Msa0573990 AT2G25760.2 36.364 286 140 5 5 248 101 386 2.73e-46 169
Msa0573990 AT3G13670.1 34.354 294 148 6 2 253 127 417 4.43e-45 166
Msa0573990 AT2G25760.1 36.014 286 138 6 5 248 101 383 4.63e-44 162
Msa0573990 AT3G03940.1 35.154 293 144 7 2 252 130 418 7.27e-44 162
Msa0573990 AT5G18190.2 34.576 295 147 7 2 254 120 410 1.04e-42 159
Msa0573990 AT5G18190.1 34.576 295 147 7 2 254 120 410 1.04e-42 159
Msa0573990 AT3G06030.1 26.794 209 121 7 9 188 68 273 6.01e-11 64.7

Find 226 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGAATCTTGGATTCTTTC+TGG 0.132424 4_1:-77317779 Msa0573990:three_prime_UTR
AGCAGACAAGGCAGGGTTTA+AGG 0.145583 4_1:+77319604 None:intergenic
TAATACACAGGCAAATATTT+TGG 0.172406 4_1:-77318601 Msa0573990:three_prime_UTR
CTTGGTGCAGGTGGCATTCC+AGG 0.196530 4_1:-77322397 Msa0573990:intron
AGTTAAAGAGCAGACCTTTC+TGG 0.218644 4_1:-77317236 Msa0573990:three_prime_UTR
GCCTTCCTTGGCAAGGTCTA+AGG 0.233807 4_1:-77321289 Msa0573990:CDS
TTTGATCAGCGGCCTGATTA+TGG 0.242360 4_1:-77321043 Msa0573990:CDS
AACCTTAAGGATTTGAATAA+TGG 0.245148 4_1:+77317315 None:intergenic
GCTTCACATATCTATTCTTC+TGG 0.259351 4_1:+77319316 None:intergenic
TATACTCTGGTTTGTGGCTC+TGG 0.267179 4_1:-77323014 Msa0573990:five_prime_UTR
TTTGTAGTATTTCTATTTCC+AGG 0.275612 4_1:-77319359 Msa0573990:intron
TTAATTTGTGATGTCATTCT+AGG 0.278405 4_1:-77318172 Msa0573990:three_prime_UTR
CATGGGCAAGCCAGTAAAAT+TGG 0.281681 4_1:-77319563 Msa0573990:CDS
TTTATGAATGCCACTATCTA+AGG 0.287937 4_1:-77317986 Msa0573990:three_prime_UTR
AGGGAGAACAAAAGCTTAAC+AGG 0.296533 4_1:-77321619 Msa0573990:intron
CTGAAAGGTCACTGAAATAA+TGG 0.302856 4_1:-77318578 Msa0573990:three_prime_UTR
GTCAGTCCGACAAGGTCTTT+TGG 0.308130 4_1:-77317353 Msa0573990:three_prime_UTR
TCATTTAGAAGACATCATTT+TGG 0.309143 4_1:-77318439 Msa0573990:three_prime_UTR
CGCCAAGGAAATATTAATAT+TGG 0.310948 4_1:-77317900 Msa0573990:three_prime_UTR
TCAGGAAATGCTACTGGTTC+TGG 0.311321 4_1:-77319846 Msa0573990:CDS
TCCGTCCATATGCAGGGATA+TGG 0.312460 4_1:+77317562 None:intergenic
CATCCGATCACCCAAATAAA+AGG 0.312645 4_1:+77318488 None:intergenic
GTGGCATTCCAGGCTTAAAA+TGG 0.316285 4_1:-77322387 Msa0573990:CDS
AAATTCTTTGTGCTGATATA+AGG 0.323101 4_1:-77317665 Msa0573990:three_prime_UTR
CGCATCTTTCCCAAAGTGTT+TGG 0.323273 4_1:-77319276 Msa0573990:three_prime_UTR
AGCAAACATGAACAAGTAAA+AGG 0.325764 4_1:+77318816 None:intergenic
TCTTTACCACAGCCAGTTCC+TGG 0.326468 4_1:-77320231 Msa0573990:intron
GTACTTCTGTACTTCCTTAG+AGG 0.327253 4_1:-77321434 Msa0573990:CDS
CTCCCTCTTGCACTAGATTC+TGG 0.331868 4_1:-77322946 Msa0573990:five_prime_UTR
TCCAAAGCTCGTTATACTTC+AGG 0.339550 4_1:+77317490 None:intergenic
CTCCTGCTGGTACTTCAAAA+AGG 0.340286 4_1:-77319631 Msa0573990:CDS
CTGCTTCAGTGTAAGAATCT+TGG 0.345998 4_1:-77317790 Msa0573990:three_prime_UTR
ACAAGCACTTCTTTACTTGT+AGG 0.346895 4_1:-77318220 Msa0573990:three_prime_UTR
AAAATGTGAATTCAATGTTT+TGG 0.349078 4_1:+77317614 None:intergenic
TAAAATGGTTTGGCATAGAT+AGG 0.351034 4_1:-77322372 Msa0573990:CDS
TTTGTTTCATGTGTGATTCA+AGG 0.353301 4_1:-77318128 Msa0573990:intron
GCAAAGTAGACGGGATGATT+TGG 0.359030 4_1:-77321471 Msa0573990:CDS
ATAAGTCAGCATAAGCATTC+TGG 0.359714 4_1:-77317932 Msa0573990:three_prime_UTR
TGCCATTATTCAAATCCTTA+AGG 0.361130 4_1:-77317317 Msa0573990:three_prime_UTR
TATTCTTGACCAAACACTTT+GGG 0.361434 4_1:+77319267 None:intergenic
TACCATGCTTGGCATTCATT+TGG 0.369004 4_1:+77319496 None:intergenic
GAATGCCATACCTTCCTCTA+AGG 0.375079 4_1:+77321420 None:intergenic
GCAAGTTGCAATACTCATCT+TGG 0.379672 4_1:-77321583 Msa0573990:CDS
GAGAATAATAAAATCTTGCT+TGG 0.382101 4_1:+77317194 None:intergenic
TGATTGCTGATACTTTAAAA+TGG 0.383962 4_1:+77320424 None:intergenic
GCAGACAAGGCAGGGTTTAA+GGG 0.384050 4_1:+77319605 None:intergenic
CGGTTGCTTGCACCAGGAAC+TGG 0.387904 4_1:+77320219 None:intergenic
GTTTCTTGTGAGTGCGGCTT+CGG 0.388012 4_1:+77322970 None:intergenic
TCCTGAAGTATAACGAGCTT+TGG 0.392778 4_1:-77317491 Msa0573990:three_prime_UTR
TTCATAAATTTCAGTGGAAA+AGG 0.395310 4_1:+77318001 None:intergenic
GTGCTTGCTATCGATTTACT+TGG 0.395396 4_1:-77322340 Msa0573990:CDS
GAGGTATTGAAGGCAGTTCT+TGG 0.402790 4_1:-77318547 Msa0573990:three_prime_UTR
CGCTTCAAGAATCCATAATC+AGG 0.403903 4_1:+77321031 None:intergenic
TTGATTTCAATTGGAGAGAA+AGG 0.404350 4_1:-77317824 Msa0573990:three_prime_UTR
AAGTAGTCATTGATTTCAAT+TGG 0.404935 4_1:-77317833 Msa0573990:three_prime_UTR
ATTCCAGGCTTAAAATGGTT+TGG 0.408195 4_1:-77322382 Msa0573990:CDS
TACCAATATTAATATTTCCT+TGG 0.417219 4_1:+77317898 None:intergenic
AACATGTAAAGGCCTCAAAT+AGG 0.422857 4_1:+77319178 None:intergenic
CTGAAGCAGAACTTATCAAT+AGG 0.425359 4_1:+77318370 None:intergenic
CTTCACATATCTATTCTTCT+GGG 0.426663 4_1:+77319317 None:intergenic
TTGAGTTAATATGACTTCAA+TGG 0.427860 4_1:-77317864 Msa0573990:three_prime_UTR
ATATTAAAGTGGTGTATTCA+TGG 0.428722 4_1:-77319247 Msa0573990:three_prime_UTR
GATGACATCCAGCTACTTGA+AGG 0.432963 4_1:+77319539 None:intergenic
TAATCATCAAGTAACATAAC+AGG 0.441881 4_1:+77318998 None:intergenic
TCTTCAGAACTATTTGTAGT+TGG 0.448253 4_1:-77317415 Msa0573990:three_prime_UTR
CAATCCCATATCCCTGCATA+TGG 0.448507 4_1:-77317567 Msa0573990:three_prime_UTR
AAGTCCCATGAGGAAGTTAT+CGG 0.450800 4_1:+77322084 None:intergenic
CTGCGTTGGCACTTATCATA+TGG 0.451350 4_1:+77318964 None:intergenic
TGCAATACTCATCTTGGGAT+TGG 0.451960 4_1:-77321577 Msa0573990:intron
CAAGTTGCAATACTCATCTT+GGG 0.453718 4_1:-77321582 Msa0573990:CDS
TCAAGTAACATAACAGGAAA+AGG 0.454066 4_1:+77319004 None:intergenic
TGCTATCCAAAAGACCTTGT+CGG 0.458409 4_1:+77317347 None:intergenic
ACTAGCACAAAACACTGATC+AGG 0.459408 4_1:+77317276 None:intergenic
AAGTATGAAGCAAACTCTAC+TGG 0.459456 4_1:+77321088 None:intergenic
AAGCTCTACAATATTCTTCA+AGG 0.460096 4_1:-77322511 Msa0573990:CDS
CTCAAATATTAATGATAAGT+GGG 0.460894 4_1:-77317756 Msa0573990:three_prime_UTR
AACTTATCAATAGGCAGGAC+AGG 0.461305 4_1:+77318379 None:intergenic
GAACCTTCCAACACTGGACA+TGG 0.461334 4_1:-77319581 Msa0573990:CDS
AATCACCTTCACGAGCAAAT+AGG 0.462598 4_1:+77320996 None:intergenic
CCTTCCTTGGCAAGGTCTAA+GGG 0.464110 4_1:-77321288 Msa0573990:CDS
ATTGAATATGTGCATTCTAA+AGG 0.468242 4_1:-77322130 Msa0573990:CDS
GGTTTCTTGTGAGGTATTGA+AGG 0.470942 4_1:-77318557 Msa0573990:three_prime_UTR
AGAATAATAAAATCTTGCTT+GGG 0.471064 4_1:+77317195 None:intergenic
GACTATCCAGGCTTGGGTCC+CGG 0.471067 4_1:-77319104 Msa0573990:three_prime_UTR
GATTGTGTCCGTCCATATGC+AGG 0.472687 4_1:+77317555 None:intergenic
GCTCAAATATTAATGATAAG+TGG 0.472758 4_1:-77317757 Msa0573990:three_prime_UTR
TTCATGCATATTCAGGGCAT+GGG 0.474995 4_1:-77319884 Msa0573990:intron
AACCAGAAAATTACCATGCT+TGG 0.477982 4_1:+77319485 None:intergenic
TGTGAGTGCGGCTTCGGCAA+TGG 0.479117 4_1:+77322976 None:intergenic
TCTGCTTCTTATGCTCCTGC+TGG 0.479546 4_1:-77319644 Msa0573990:CDS
ATCAAATATACTCACAGATA+AGG 0.481086 4_1:+77320379 None:intergenic
CTGGAACCTTCTTCAAAACA+TGG 0.481485 4_1:-77322927 Msa0573990:exon
TTGAAGAATATTGTAGAGCT+TGG 0.482642 4_1:+77322513 None:intergenic
TGTCTTTAATCTTATCAACT+TGG 0.484388 4_1:-77318345 Msa0573990:three_prime_UTR
ATATTCTTGACCAAACACTT+TGG 0.486602 4_1:+77319266 None:intergenic
GTCAGAACTCAAGTTTCTAC+CGG 0.488889 4_1:+77319797 None:intergenic
CCATCCGATACCTTTGATAG+TGG 0.489173 4_1:-77317639 Msa0573990:three_prime_UTR
AAATTGGACCTTCAAGTAGC+TGG 0.490531 4_1:-77319547 Msa0573990:CDS
ACAGCACCGGGACCCAAGCC+TGG 0.492025 4_1:+77319098 None:intergenic
CATCCGATACCTTTGATAGT+GGG 0.494886 4_1:-77317638 Msa0573990:three_prime_UTR
GAATCTGTTGGAAAAGTTGA+AGG 0.495352 4_1:-77317520 Msa0573990:three_prime_UTR
GAAGGTTCAGCAGACAAGGC+AGG 0.495629 4_1:+77319596 None:intergenic
TACAAGCTTGGCCGCAAGAT+CGG 0.497439 4_1:-77322884 Msa0573990:CDS
CCGTCCATATGCAGGGATAT+GGG 0.497694 4_1:+77317563 None:intergenic
TTGTTTAGCCTTCCTTGGCA+AGG 0.498778 4_1:-77321296 Msa0573990:intron
AAATACAGACTATCCAGGCT+TGG 0.499241 4_1:-77319111 Msa0573990:three_prime_UTR
TGCCCATGTCCAGTGTTGGA+AGG 0.501193 4_1:+77319578 None:intergenic
TATTAATATAATTTCTAACC+TGG 0.501843 4_1:+77318619 None:intergenic
CTTGGCCGCAAGATCGGAAG+TGG 0.502438 4_1:-77322878 Msa0573990:CDS
CATGGAGACTGTGACTGTGC+TGG 0.502667 4_1:-77319223 Msa0573990:three_prime_UTR
TGCTTGCTATCGATTTACTT+GGG 0.508590 4_1:-77322339 Msa0573990:CDS
ATGTCAATGAGTGGCAGTAA+TGG 0.510047 4_1:+77321065 None:intergenic
AAATTTAAACCAAGCTGCGT+TGG 0.513552 4_1:+77318950 None:intergenic
GGCCCCACTATCAAAGGTAT+CGG 0.514042 4_1:+77317635 None:intergenic
TAATAATATACTCTGGTTTG+TGG 0.520138 4_1:-77323020 Msa0573990:five_prime_UTR
TTTGGTCAAGAATATTAAAG+TGG 0.520163 4_1:-77319258 Msa0573990:three_prime_UTR
GGGGAAGAGCGAATTAGATC+AGG 0.520235 4_1:-77319864 Msa0573990:CDS
AACATGGAGCGCATCGTTGG+CGG 0.520716 4_1:-77322911 Msa0573990:CDS
AATTGCATAGCTCCTATTTG+AGG 0.521420 4_1:-77319190 Msa0573990:three_prime_UTR
TAATTTGTGATGTCATTCTA+GGG 0.521493 4_1:-77318171 Msa0573990:three_prime_UTR
CCCTTAGACCTTGCCAAGGA+AGG 0.522544 4_1:+77321288 None:intergenic
CTGTTGGAAAAGTTGAAGGT+TGG 0.522624 4_1:-77317516 Msa0573990:three_prime_UTR
ATTCTAAAGGATATTTGCAT+AGG 0.523357 4_1:-77322117 Msa0573990:CDS
CAAAACATGGAGCGCATCGT+TGG 0.523862 4_1:-77322914 Msa0573990:exon
TGAAATAATGGTTTCTTGTG+AGG 0.524044 4_1:-77318566 Msa0573990:three_prime_UTR
TACATGTTGCTTCTTTCCTG+TGG 0.524197 4_1:-77319163 Msa0573990:three_prime_UTR
AATACAGACTATCCAGGCTT+GGG 0.524729 4_1:-77319110 Msa0573990:three_prime_UTR
GAACTCAAGTTTCTACCGGC+TGG 0.525103 4_1:+77319801 None:intergenic
TGATAAGTGCCAACGCAGCT+TGG 0.525270 4_1:-77318959 Msa0573990:three_prime_UTR
CATCAGAAGCAGCAGCGTCA+TGG 0.526408 4_1:+77317956 None:intergenic
AAGATCGGAAGTGGATCCTT+CGG 0.526716 4_1:-77322869 Msa0573990:CDS
ACTTGGTCGGAAGGCCAACC+AGG 0.527701 4_1:-77322065 Msa0573990:intron
AGGAAAGAAGCAACATGTAA+AGG 0.528947 4_1:+77319167 None:intergenic
GCACAATTTGACACTTGCCC+AGG 0.529913 4_1:-77318195 Msa0573990:three_prime_UTR
TGGCACTTATCATATGGCAC+GGG 0.532630 4_1:+77318970 None:intergenic
AGCAGAACTTATCAATAGGC+AGG 0.536171 4_1:+77318374 None:intergenic
ATTAGATCAGGAAATGCTAC+TGG 0.537963 4_1:-77319852 Msa0573990:CDS
GATAACTTCCTCATGGGACT+TGG 0.538752 4_1:-77322082 Msa0573990:CDS
GTTGGCGGCAGCTACAAGCT+TGG 0.539526 4_1:-77322896 Msa0573990:CDS
GTTGGAAGGTTCAGCAGACA+AGG 0.540905 4_1:+77319592 None:intergenic
ATCAGAAGCAGCAGCGTCAT+GGG 0.541989 4_1:+77317957 None:intergenic
GGCTTGCCCATGTCCAGTGT+TGG 0.544697 4_1:+77319574 None:intergenic
GCTTAAATACTGACCTCGAT+AGG 0.544757 4_1:+77321212 None:intergenic
GGGATTGTGGAACCATCGAT+TGG 0.545147 4_1:+77317583 None:intergenic
TTCTAAAGGATATTTGCATA+GGG 0.547650 4_1:-77322116 Msa0573990:CDS
ATGGATGTTGACAATCATCA+AGG 0.547757 4_1:-77320183 Msa0573990:intron
GCATGACGGTTGCTTGCACC+AGG 0.549982 4_1:+77320213 None:intergenic
AAAATGGTTTGGCATAGATA+GGG 0.551435 4_1:-77322371 Msa0573990:CDS
GTTAATGTTAGCTGATCAAA+TGG 0.552458 4_1:-77322260 Msa0573990:intron
TCTGCTGAACCTTCCAACAC+TGG 0.553667 4_1:-77319587 Msa0573990:CDS
CAGACAAGGCAGGGTTTAAG+GGG 0.554251 4_1:+77319606 None:intergenic
CTGTGACTGTGCTGGAAGGT+TGG 0.556967 4_1:-77319215 Msa0573990:three_prime_UTR
GTATGAAATACAGACTATCC+AGG 0.559225 4_1:-77319116 Msa0573990:three_prime_UTR
ATCTTCATACGATTCAAGCC+TGG 0.559828 4_1:+77319341 None:intergenic
AAGGTTCAGCAGACAAGGCA+GGG 0.560637 4_1:+77319597 None:intergenic
ATGAAACAAGCCATCCAGAA+AGG 0.561981 4_1:+77317222 None:intergenic
ACATCATCTGTCTTTCATGA+TGG 0.562006 4_1:-77318669 Msa0573990:three_prime_UTR
CTGACATCTATGTACAGCAC+CGG 0.562156 4_1:+77319085 None:intergenic
CCTCATGGGACTTGGTCGGA+AGG 0.562643 4_1:-77322074 Msa0573990:CDS
ATAAGAGATATCTAAACTGA+AGG 0.563886 4_1:-77318739 Msa0573990:three_prime_UTR
CTTGAGAAAGTCTTGCAGCA+AGG 0.564878 4_1:-77317450 Msa0573990:three_prime_UTR
TTCTGTACTTCCTTAGAGGA+AGG 0.567077 4_1:-77321430 Msa0573990:intron
GTTCCAGAATCTAGTGCAAG+AGG 0.569335 4_1:+77322943 None:intergenic
TACACTGAAGCAGCATAACT+AGG 0.569561 4_1:+77317800 None:intergenic
CAACCGTCATGCAGTAGCAA+TGG 0.569747 4_1:-77320202 Msa0573990:CDS
AGTCCCATGAGGAAGTTATC+GGG 0.570424 4_1:+77322085 None:intergenic
CGGGATGATTTGGAATCACT+AGG 0.571323 4_1:-77321461 Msa0573990:CDS
TAAACCCGATAACTTCCTCA+TGG 0.571460 4_1:-77322089 Msa0573990:CDS
AGAGACCTATTTGCTCGTGA+AGG 0.573148 4_1:-77321001 Msa0573990:intron
AGAATCTAGTGCAAGAGGGA+GGG 0.573964 4_1:+77322948 None:intergenic
GGGAGGGTTTCTTGTGAGTG+CGG 0.574517 4_1:+77322964 None:intergenic
TACAGTATAATAATATACTC+TGG 0.578187 4_1:-77323027 Msa0573990:five_prime_UTR
GTGGCATTCATAAATTTCAG+TGG 0.578275 4_1:+77317995 None:intergenic
TTCCAAATGAATGCCAAGCA+TGG 0.578457 4_1:-77319498 Msa0573990:intron
GTATTGAAGGCAGTTCTTGG+TGG 0.581998 4_1:-77318544 Msa0573990:three_prime_UTR
AAACCCGATAACTTCCTCAT+GGG 0.582601 4_1:-77322088 Msa0573990:CDS
TAGAAATTATATTAATACAC+AGG 0.582742 4_1:-77318613 Msa0573990:three_prime_UTR
TTTGACGGCGACGATTTCGA+AGG 0.585931 4_1:+77322728 None:intergenic
AAGTGGTGTATTCATGGACA+TGG 0.588755 4_1:-77319241 Msa0573990:three_prime_UTR
TTGGCACTTATCATATGGCA+CGG 0.589263 4_1:+77318969 None:intergenic
AACCTTCCAACACTGGACAT+GGG 0.589719 4_1:-77319580 Msa0573990:CDS
GCTTCGGCAATGGAGAATGA+AGG 0.591797 4_1:+77322986 None:intergenic
AGGATCCACTTCCGATCTTG+CGG 0.593120 4_1:+77322873 None:intergenic
CCACTATCAAAGGTATCGGA+TGG 0.593522 4_1:+77317639 None:intergenic
CCCATATCCCTGCATATGGA+CGG 0.598247 4_1:-77317563 Msa0573990:three_prime_UTR
ATGGTTTGGCATAGATAGGG+AGG 0.602024 4_1:-77322368 Msa0573990:CDS
AGCAGGAGCATAAGAAGCAG+AGG 0.604520 4_1:+77319646 None:intergenic
CAGAATCTAGTGCAAGAGGG+AGG 0.604735 4_1:+77322947 None:intergenic
TAATAAGATAGTTACCTGGT+TGG 0.604773 4_1:+77322051 None:intergenic
ATCCGATACCTTTGATAGTG+GGG 0.611373 4_1:-77317637 Msa0573990:three_prime_UTR
AAAGAGCAGACCTTTCTGGA+TGG 0.611977 4_1:-77317232 Msa0573990:three_prime_UTR
AATATACTCACAGATAAGGA+AGG 0.613072 4_1:+77320383 None:intergenic
CTTAAGGTTACGAAAAGACA+TGG 0.615653 4_1:-77317301 Msa0573990:three_prime_UTR
AATGACATCACAAATTAACC+TGG 0.616039 4_1:+77318177 None:intergenic
TGGGTATGTTCCTTAGATAG+TGG 0.616372 4_1:+77317976 None:intergenic
CTAGCACAAAACACTGATCA+GGG 0.616979 4_1:+77317277 None:intergenic
TCCTTCGGTGAAATTTACCT+CGG 0.620087 4_1:-77322854 Msa0573990:intron
TATGCAGGGATATGGGATTG+TGG 0.620464 4_1:+77317570 None:intergenic
GTTCAGTTCAAATCACCAGC+CGG 0.624880 4_1:-77319816 Msa0573990:CDS
TCATGCATATTCAGGGCATG+GGG 0.625170 4_1:-77319883 Msa0573990:intron
TCAAATATTAATGATAAGTG+GGG 0.625688 4_1:-77317755 Msa0573990:three_prime_UTR
ATTGTGTCCGTCCATATGCA+GGG 0.629223 4_1:+77317556 None:intergenic
ACTCATTGACATTTGATCAG+CGG 0.629606 4_1:-77321054 Msa0573990:CDS
ACCGAGGTAAATTTCACCGA+AGG 0.633578 4_1:+77322853 None:intergenic
ACTTCCTCATGGGACTTGGT+CGG 0.634675 4_1:-77322078 Msa0573990:CDS
TGTCTTACATTCTTGTCACG+AGG 0.637274 4_1:+77319771 None:intergenic
GAGACTGTGACTGTGCTGGA+AGG 0.637869 4_1:-77319219 Msa0573990:three_prime_UTR
TGACATCTATGTACAGCACC+GGG 0.638321 4_1:+77319086 None:intergenic
TTCCAGAATCTAGTGCAAGA+GGG 0.639698 4_1:+77322944 None:intergenic
GCATCCACAGTTGCTTTACG+AGG 0.642435 4_1:-77322536 Msa0573990:CDS
TTCTGGATGAAAATACGCCA+AGG 0.643742 4_1:-77317915 Msa0573990:three_prime_UTR
ATGACATCACAAATTAACCT+GGG 0.650322 4_1:+77318178 None:intergenic
GCAGCCCTTAGACCTTGCCA+AGG 0.650628 4_1:+77321284 None:intergenic
AAACATGAACAAGTAAAAGG+AGG 0.654815 4_1:+77318819 None:intergenic
ATCATGATATCATGTGAATG+TGG 0.657111 4_1:+77318513 None:intergenic
CTCTACAATATTCTTCAAGG+AGG 0.657190 4_1:-77322508 Msa0573990:CDS
GCTGATCAAATGTCAATGAG+TGG 0.657329 4_1:+77321056 None:intergenic
CATCCATTGCTACTGCATGA+CGG 0.662544 4_1:+77320199 None:intergenic
GAAGGTATCGACTCCTATCG+AGG 0.668216 4_1:-77321225 Msa0573990:intron
ATATGAATGTCAGTCCGACA+AGG 0.674012 4_1:-77317361 Msa0573990:three_prime_UTR
GATATGTGAAGCTGCACACG+TGG 0.676707 4_1:-77319305 Msa0573990:three_prime_UTR
GGGAGAACAAAAGCTTAACA+GGG 0.678093 4_1:-77321618 Msa0573990:intron
TTGGCCTCGTAAAGCAACTG+TGG 0.692532 4_1:+77322532 None:intergenic
GGCACTTATCATATGGCACG+GGG 0.701972 4_1:+77318971 None:intergenic
CCTTCCGACCAAGTCCCATG+AGG 0.721487 4_1:+77322074 None:intergenic
CTGTACATAGATGTCAGATG+TGG 0.722642 4_1:-77319079 Msa0573990:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAATATTAAAAGCAAAAT+TGG + chr4_1:77317579-77317598 None:intergenic 15.0%
!! ATAAAAGAATGAAACAAAAA+TGG + chr4_1:77318480-77318499 None:intergenic 15.0%
!!! AAGCCAAATTTTTAATTATA+TGG - chr4_1:77319465-77319484 Msa0573990:intron 15.0%
!!! AGCCAAATTTTTAATTATAT+GGG - chr4_1:77319466-77319485 Msa0573990:intron 15.0%
!! TACCCATATAATTAAAAATT+TGG + chr4_1:77319471-77319490 None:intergenic 15.0%
!! AAATACAAATAAATAAGGAT+AGG + chr4_1:77320851-77320870 None:intergenic 15.0%
!! CTACAAAATACAAATAAATA+AGG + chr4_1:77320856-77320875 None:intergenic 15.0%
!!! TATAGTTTTTTTTTTTTGAG+AGG - chr4_1:77321340-77321359 Msa0573990:intron 15.0%
!! TATTAATATAATTTCTAACC+TGG + chr4_1:77321612-77321631 None:intergenic 15.0%
!! TAGAAATTATATTAATACAC+AGG - chr4_1:77321615-77321634 Msa0573990:CDS 15.0%
!! TACAGTATAATAATATACTC+TGG - chr4_1:77317201-77317220 Msa0573990:three_prime_UTR 20.0%
!!! TTCTATCATAAACCATATTT+TGG - chr4_1:77318334-77318353 Msa0573990:three_prime_UTR 20.0%
!!! AGGTTTACATAATTGATTTT+GGG - chr4_1:77318389-77318408 Msa0573990:three_prime_UTR 20.0%
!!! AAACATTTATTCAAGTTGAA+AGG + chr4_1:77318705-77318724 None:intergenic 20.0%
!!! AGTTATTTTACTTTATTCAG+GGG + chr4_1:77319071-77319090 None:intergenic 20.0%
!!! CAGTTATTTTACTTTATTCA+GGG + chr4_1:77319072-77319091 None:intergenic 20.0%
!!! ATAATTAAAAATTTGGCTTC+AGG + chr4_1:77319464-77319483 None:intergenic 20.0%
!!! GGTATAAAATGTTTTGATTT+TGG - chr4_1:77319487-77319506 Msa0573990:intron 20.0%
!!! TTTAAGGAATAGTATTTTAG+AGG - chr4_1:77319536-77319555 Msa0573990:CDS 20.0%
!!! AATTATTTTAAACACATGCA+TGG - chr4_1:77319679-77319698 Msa0573990:intron 20.0%
!!! AATTTGATTTCGTTTTTGAT+TGG - chr4_1:77319780-77319799 Msa0573990:CDS 20.0%
!! TTTAATATTATCAGAAGCAA+GGG + chr4_1:77319973-77319992 None:intergenic 20.0%
!!! TTTTAATATTATCAGAAGCA+AGG + chr4_1:77319974-77319993 None:intergenic 20.0%
!!! TTTTTTCTTGTTATTTTACC+AGG - chr4_1:77321591-77321610 Msa0573990:CDS 20.0%
!! TACCAATATTAATATTTCCT+TGG + chr4_1:77322333-77322352 None:intergenic 20.0%
!! CTCAAATATTAATGATAAGT+GGG - chr4_1:77322472-77322491 Msa0573990:intron 20.0%
!! TCAAATATTAATGATAAGTG+GGG - chr4_1:77322473-77322492 Msa0573990:intron 20.0%
!!! TTTTACAAATTTTCCAGATA+GGG + chr4_1:77322546-77322565 None:intergenic 20.0%
!!! ATTTTACAAATTTTCCAGAT+AGG + chr4_1:77322547-77322566 None:intergenic 20.0%
!!! AAAATGTGAATTCAATGTTT+TGG + chr4_1:77322617-77322636 None:intergenic 20.0%
!! AGAATAATAAAATCTTGCTT+GGG + chr4_1:77323036-77323055 None:intergenic 20.0%
!! TAATAATATACTCTGGTTTG+TGG - chr4_1:77317208-77317227 Msa0573990:three_prime_UTR 25.0%
!!! GTTGTTTTTGTATTGTTCTA+AGG - chr4_1:77317769-77317788 Msa0573990:three_prime_UTR 25.0%
!!! GAAGATCTTTTTGTTTATTG+TGG - chr4_1:77317921-77317940 Msa0573990:three_prime_UTR 25.0%
!!! ATCTTTTTGTTTATTGTGGA+AGG - chr4_1:77317925-77317944 Msa0573990:three_prime_UTR 25.0%
! ATTGAATATGTGCATTCTAA+AGG - chr4_1:77318098-77318117 Msa0573990:intron 25.0%
!! ATTCTAAAGGATATTTGCAT+AGG - chr4_1:77318111-77318130 Msa0573990:intron 25.0%
!! TTCTAAAGGATATTTGCATA+GGG - chr4_1:77318112-77318131 Msa0573990:intron 25.0%
!!! CTACTTGTTGCTATTTATTA+TGG - chr4_1:77318232-77318251 Msa0573990:three_prime_UTR 25.0%
! TTATGAATTGGACCAAAATA+TGG + chr4_1:77318349-77318368 None:intergenic 25.0%
!!! CAGGTTTACATAATTGATTT+TGG - chr4_1:77318388-77318407 Msa0573990:three_prime_UTR 25.0%
! TTTGTTAGTCACAAAAACTA+AGG + chr4_1:77318579-77318598 None:intergenic 25.0%
! ACTAACAAATATAACCTACA+GGG - chr4_1:77318590-77318609 Msa0573990:three_prime_UTR 25.0%
!!! TTTTTTTAGAGCAAAGTAGA+CGG - chr4_1:77318747-77318766 Msa0573990:three_prime_UTR 25.0%
! TGAAAAAATATGTCAGAAGA+AGG - chr4_1:77318985-77319004 Msa0573990:three_prime_UTR 25.0%
!!! TTATTTTACTTTATTCAGGG+GGG + chr4_1:77319069-77319088 None:intergenic 25.0%
!!! GTTATTTTACTTTATTCAGG+GGG + chr4_1:77319070-77319089 None:intergenic 25.0%
!!! CCAGTTATTTTACTTTATTC+AGG + chr4_1:77319073-77319092 None:intergenic 25.0%
! CCTGAATAAAGTAAAATAAC+TGG - chr4_1:77319070-77319089 Msa0573990:three_prime_UTR 25.0%
!!! ATTTTTTTTCCCTTTCCAAA+AGG - chr4_1:77319100-77319119 Msa0573990:three_prime_UTR 25.0%
! CCTTAAATTTAGTCAATCAT+AGG + chr4_1:77319523-77319542 None:intergenic 25.0%
! CCTATGATTGACTAAATTTA+AGG - chr4_1:77319520-77319539 Msa0573990:CDS 25.0%
! ATACATAAAGGAAAAACAGA+GGG + chr4_1:77319749-77319768 None:intergenic 25.0%
!! TGATTGCTGATACTTTAAAA+TGG + chr4_1:77319807-77319826 None:intergenic 25.0%
! ATCAAATATACTCACAGATA+AGG + chr4_1:77319852-77319871 None:intergenic 25.0%
!!! TTCCTTGTCATTTATTTTGT+GGG - chr4_1:77319910-77319929 Msa0573990:intron 25.0%
!! AAGATTTTCATGCATATTCA+GGG - chr4_1:77320338-77320357 Msa0573990:intron 25.0%
!! GAGATCAATTATTCTCTTTT+TGG - chr4_1:77320534-77320553 Msa0573990:intron 25.0%
!!! TTCTCTTTTTGGTAGATTTT+TGG - chr4_1:77320545-77320564 Msa0573990:intron 25.0%
!!! TTCGTGCTGTTTATTTTTTT+AGG - chr4_1:77320764-77320783 Msa0573990:intron 25.0%
!!! ATTTTTTTAGGAAAAATGCG+TGG - chr4_1:77320776-77320795 Msa0573990:intron 25.0%
!! TTTGTAGTATTTCTATTTCC+AGG - chr4_1:77320869-77320888 Msa0573990:intron 25.0%
! TTTGGTCAAGAATATTAAAG+TGG - chr4_1:77320970-77320989 Msa0573990:intron 25.0%
! ATATTAAAGTGGTGTATTCA+TGG - chr4_1:77320981-77321000 Msa0573990:intron 25.0%
! TAATCATCAAGTAACATAAC+AGG + chr4_1:77321233-77321252 None:intergenic 25.0%
! ATAAGAGATATCTAAACTGA+AGG - chr4_1:77321489-77321508 Msa0573990:intron 25.0%
!! TAATACACAGGCAAATATTT+TGG - chr4_1:77321627-77321646 Msa0573990:intron 25.0%
!! TATCATGATTGCCTTTTATT+TGG - chr4_1:77321729-77321748 Msa0573990:intron 25.0%
!!! ATCATGATTGCCTTTTATTT+GGG - chr4_1:77321730-77321749 Msa0573990:intron 25.0%
!! TCATTTAGAAGACATCATTT+TGG - chr4_1:77321789-77321808 Msa0573990:intron 25.0%
! TGTCTTTAATCTTATCAACT+TGG - chr4_1:77321883-77321902 Msa0573990:intron 25.0%
!!! TTCAACTATAATTTTGATGC+TGG - chr4_1:77321917-77321936 Msa0573990:intron 25.0%
!!! TTAATTTGTGATGTCATTCT+AGG - chr4_1:77322056-77322075 Msa0573990:intron 25.0%
!! TAATTTGTGATGTCATTCTA+GGG - chr4_1:77322057-77322076 Msa0573990:intron 25.0%
! ACTAACTCGTAAAACAAATT+TGG - chr4_1:77322161-77322180 Msa0573990:intron 25.0%
! TTCATAAATTTCAGTGGAAA+AGG + chr4_1:77322230-77322249 None:intergenic 25.0%
! TTGAGTTAATATGACTTCAA+TGG - chr4_1:77322364-77322383 Msa0573990:CDS 25.0%
!!! AAGTAGTCATTGATTTCAAT+TGG - chr4_1:77322395-77322414 Msa0573990:intron 25.0%
! GCTCAAATATTAATGATAAG+TGG - chr4_1:77322471-77322490 Msa0573990:intron 25.0%
!!! ATGACTTGATTTGTTTTTAC+TGG - chr4_1:77322497-77322516 Msa0573990:intron 25.0%
!! TTTACAAATTTTCCAGATAG+GGG + chr4_1:77322545-77322564 None:intergenic 25.0%
!! AAATTCTTTGTGCTGATATA+AGG - chr4_1:77322563-77322582 Msa0573990:intron 25.0%
!! TTTTATCAATTTCCAATCGA+TGG - chr4_1:77322633-77322652 Msa0573990:intron 25.0%
! AACCTTAAGGATTTGAATAA+TGG + chr4_1:77322916-77322935 None:intergenic 25.0%
! GAGAATAATAAAATCTTGCT+TGG + chr4_1:77323037-77323056 None:intergenic 25.0%
CAAATTAGAGAGTGAGTATT+AGG + chr4_1:77317550-77317569 None:intergenic 30.0%
!! AATGTAACGTTAAGTTTTGG+TGG + chr4_1:77317640-77317659 None:intergenic 30.0%
! AGCAATGTAACGTTAAGTTT+TGG + chr4_1:77317643-77317662 None:intergenic 30.0%
TTACATTGCTAATTCGTTAC+AGG - chr4_1:77317653-77317672 Msa0573990:three_prime_UTR 30.0%
TTGAAGAATATTGTAGAGCT+TGG + chr4_1:77317718-77317737 None:intergenic 30.0%
AAGCTCTACAATATTCTTCA+AGG - chr4_1:77317717-77317736 Msa0573990:three_prime_UTR 30.0%
!!! GTTTTTGTATTGTTCTAAGG+AGG - chr4_1:77317772-77317791 Msa0573990:three_prime_UTR 30.0%
! TAAAATGGTTTGGCATAGAT+AGG - chr4_1:77317856-77317875 Msa0573990:three_prime_UTR 30.0%
! AAAATGGTTTGGCATAGATA+GGG - chr4_1:77317857-77317876 Msa0573990:three_prime_UTR 30.0%
ACAAAAAGATCTTCAAGACT+AGG + chr4_1:77317915-77317934 None:intergenic 30.0%
GTTAATGTTAGCTGATCAAA+TGG - chr4_1:77317968-77317987 Msa0573990:three_prime_UTR 30.0%
TAATAAGATAGTTACCTGGT+TGG + chr4_1:77318180-77318199 None:intergenic 30.0%
GCAATAATAAGATAGTTACC+TGG + chr4_1:77318184-77318203 None:intergenic 30.0%
!! TTGCTATTTATTCCACTAAG+TGG - chr4_1:77318278-77318297 Msa0573990:three_prime_UTR 30.0%
! TGCTATTTATTCCACTAAGT+GGG - chr4_1:77318279-77318298 Msa0573990:three_prime_UTR 30.0%
TGGTTTATGATAGAACTGTA+TGG + chr4_1:77318329-77318348 None:intergenic 30.0%
CAGCACATAGATTTATGAAT+TGG + chr4_1:77318361-77318380 None:intergenic 30.0%
GACTAACAAATATAACCTAC+AGG - chr4_1:77318589-77318608 Msa0573990:three_prime_UTR 30.0%
!!! TTTTTTAGAGCAAAGTAGAC+GGG - chr4_1:77318748-77318767 Msa0573990:three_prime_UTR 30.0%
ATTATTGTCTTGAGAAACAG+CGG + chr4_1:77318873-77318892 None:intergenic 30.0%
!! TATTTTTGTTTAGCCTTCCT+TGG - chr4_1:77318927-77318946 Msa0573990:three_prime_UTR 30.0%
GCAAAAGCAATCAAATGATA+TGG + chr4_1:77319295-77319314 None:intergenic 30.0%
!! TTGCTTTTGCAATTGTTTCT+TGG - chr4_1:77319305-77319324 Msa0573990:three_prime_UTR 30.0%
!! TGCTTTTGCAATTGTTTCTT+GGG - chr4_1:77319306-77319325 Msa0573990:three_prime_UTR 30.0%
TATCCTTCTTGATTTCAAAG+AGG - chr4_1:77319569-77319588 Msa0573990:CDS 30.0%
CATACATAAAGGAAAAACAG+AGG + chr4_1:77319750-77319769 None:intergenic 30.0%
! GTTTTTCCTTTATGTATGTC+AGG - chr4_1:77319752-77319771 Msa0573990:intron 30.0%
AATATACTCACAGATAAGGA+AGG + chr4_1:77319848-77319867 None:intergenic 30.0%
CACAAAATAAATGACAAGGA+AGG + chr4_1:77319911-77319930 None:intergenic 30.0%
!!! CTTCCTTGTCATTTATTTTG+TGG - chr4_1:77319909-77319928 Msa0573990:intron 30.0%
GCTAGAAAAAGTCATTGTAA+AGG - chr4_1:77320151-77320170 Msa0573990:intron 30.0%
!! CTTGTTTGTTATGACCTAAT+TGG - chr4_1:77320315-77320334 Msa0573990:intron 30.0%
TGCATGAAAATCTTCCAATT+AGG + chr4_1:77320332-77320351 None:intergenic 30.0%
! GAAGATTTTCATGCATATTC+AGG - chr4_1:77320337-77320356 Msa0573990:intron 30.0%
TAAATTCAATGTTGCATCAC+AGG + chr4_1:77320507-77320526 None:intergenic 30.0%
!! GATTTTTGGAGAAGCAAATA+TGG - chr4_1:77320559-77320578 Msa0573990:intron 30.0%
CTTCACATATCTATTCTTCT+GGG + chr4_1:77320914-77320933 None:intergenic 30.0%
TATTCTTGACCAAACACTTT+GGG + chr4_1:77320964-77320983 None:intergenic 30.0%
ATATTCTTGACCAAACACTT+TGG + chr4_1:77320965-77320984 None:intergenic 30.0%
TCAAGTAACATAACAGGAAA+AGG + chr4_1:77321227-77321246 None:intergenic 30.0%
GGAACAAAGACTATCAAAAA+CGG + chr4_1:77321391-77321410 None:intergenic 30.0%
AAACATGAACAAGTAAAAGG+AGG + chr4_1:77321412-77321431 None:intergenic 30.0%
AGCAAACATGAACAAGTAAA+AGG + chr4_1:77321415-77321434 None:intergenic 30.0%
TGAAATAATGGTTTCTTGTG+AGG - chr4_1:77321662-77321681 Msa0573990:intron 30.0%
ATCATGATATCATGTGAATG+TGG + chr4_1:77321718-77321737 None:intergenic 30.0%
ATGACATCACAAATTAACCT+GGG + chr4_1:77322053-77322072 None:intergenic 30.0%
AATGACATCACAAATTAACC+TGG + chr4_1:77322054-77322073 None:intergenic 30.0%
TTTGTTTCATGTGTGATTCA+AGG - chr4_1:77322100-77322119 Msa0573990:CDS 30.0%
!! TCCATACTTTTACTTTTGCA+GGG - chr4_1:77322201-77322220 Msa0573990:intron 30.0%
TTTATGAATGCCACTATCTA+AGG - chr4_1:77322242-77322261 Msa0573990:intron 30.0%
CGCCAAGGAAATATTAATAT+TGG - chr4_1:77322328-77322347 Msa0573990:CDS 30.0%
TTGATTTCAATTGGAGAGAA+AGG - chr4_1:77322404-77322423 Msa0573990:intron 30.0%
TAAGAATCTTGGATTCTTTC+TGG - chr4_1:77322449-77322468 Msa0573990:intron 30.0%
! TTACAAATTTTCCAGATAGG+GGG + chr4_1:77322544-77322563 None:intergenic 30.0%
!! TCGAAGTATTTTGAATCTGT+TGG - chr4_1:77322696-77322715 Msa0573990:intron 30.0%
TCTTCAGAACTATTTGTAGT+TGG - chr4_1:77322813-77322832 Msa0573990:intron 30.0%
TGCCATTATTCAAATCCTTA+AGG - chr4_1:77322911-77322930 Msa0573990:CDS 30.0%
AAAAGAAGAACGTAAGAGAG+AGG + chr4_1:77317407-77317426 None:intergenic 35.0%
! GCAGAAACTTACGATTTTGA+CGG + chr4_1:77317518-77317537 None:intergenic 35.0%
CTCTACAATATTCTTCAAGG+AGG - chr4_1:77317720-77317739 Msa0573990:three_prime_UTR 35.0%
! GTTTGAGATTTCGTGTTTCT+TGG - chr4_1:77317813-77317832 Msa0573990:three_prime_UTR 35.0%
ATTCCAGGCTTAAAATGGTT+TGG - chr4_1:77317846-77317865 Msa0573990:three_prime_UTR 35.0%
!! TGCTTGCTATCGATTTACTT+GGG - chr4_1:77317889-77317908 Msa0573990:three_prime_UTR 35.0%
GCTATTTATTCCACTAAGTG+GGG - chr4_1:77318280-77318299 Msa0573990:three_prime_UTR 35.0%
!!! ATCTATGTGCTGTTTTTGTC+AGG - chr4_1:77318369-77318388 Msa0573990:three_prime_UTR 35.0%
!!! TTGATTTTGGGCTAGCAAAA+CGG - chr4_1:77318401-77318420 Msa0573990:three_prime_UTR 35.0%
CATTGTAGAACTACCTGTAA+GGG + chr4_1:77318456-77318475 None:intergenic 35.0%
ACATTGTAGAACTACCTGTA+AGG + chr4_1:77318457-77318476 None:intergenic 35.0%
GTTAGTCACAAAAACTAAGG+AGG + chr4_1:77318576-77318595 None:intergenic 35.0%
CAAGTTGCAATACTCATCTT+GGG - chr4_1:77318646-77318665 Msa0573990:three_prime_UTR 35.0%
ATACTTCAGGAAAGATCATG+TGG + chr4_1:77318838-77318857 None:intergenic 35.0%
!! GGTTCTGGAAAAAATACTTC+AGG + chr4_1:77318851-77318870 None:intergenic 35.0%
TTATTGTCTTGAGAAACAGC+GGG + chr4_1:77318872-77318891 None:intergenic 35.0%
!! TGCATAGTACCTTTTGGAAA+GGG + chr4_1:77319112-77319131 None:intergenic 35.0%
!! TTGCATAGTACCTTTTGGAA+AGG + chr4_1:77319113-77319132 None:intergenic 35.0%
! GAGATTTGCATAGTACCTTT+TGG + chr4_1:77319118-77319137 None:intergenic 35.0%
AAGTATGAAGCAAACTCTAC+TGG + chr4_1:77319143-77319162 None:intergenic 35.0%
ACTCATTGACATTTGATCAG+CGG - chr4_1:77319174-77319193 Msa0573990:three_prime_UTR 35.0%
!! GCTTTTGCAATTGTTTCTTG+GGG - chr4_1:77319307-77319326 Msa0573990:three_prime_UTR 35.0%
!! CTTTTGCAATTGTTTCTTGG+GGG - chr4_1:77319308-77319327 Msa0573990:three_prime_UTR 35.0%
AAGTTAGCAAGGTATACCTT+CGG + chr4_1:77319382-77319401 None:intergenic 35.0%
ACATCTGCGAAATAATGAGT+AGG - chr4_1:77319402-77319421 Msa0573990:intron 35.0%
!! TGACCTCTTTGAAATCAAGA+AGG + chr4_1:77319575-77319594 None:intergenic 35.0%
TTGATTTCAAAGAGGTCATG+TGG - chr4_1:77319577-77319596 Msa0573990:CDS 35.0%
! AGTCCTCATTTTCTCAAGAA+TGG - chr4_1:77319630-77319649 Msa0573990:CDS 35.0%
! GTCCTCATTTTCTCAAGAAT+GGG - chr4_1:77319631-77319650 Msa0573990:CDS 35.0%
! TCCTCATTTTCTCAAGAATG+GGG - chr4_1:77319632-77319651 Msa0573990:CDS 35.0%
GGGAGAGGAAAAGTTATATT+TGG + chr4_1:77319729-77319748 None:intergenic 35.0%
TCATAGCCTGACATACATAA+AGG + chr4_1:77319761-77319780 None:intergenic 35.0%
GTCCCACAAAATAAATGACA+AGG + chr4_1:77319915-77319934 None:intergenic 35.0%
!!! TCATTTATTTTGTGGGACTG+AGG - chr4_1:77319917-77319936 Msa0573990:intron 35.0%
!!! CATTTATTTTGTGGGACTGA+GGG - chr4_1:77319918-77319937 Msa0573990:intron 35.0%
!!! ATTTATTTTGTGGGACTGAG+GGG - chr4_1:77319919-77319938 Msa0573990:intron 35.0%
ATGGATGTTGACAATCATCA+AGG - chr4_1:77320045-77320064 Msa0573990:intron 35.0%
TTGTGTGCAGTGTCTTAAAT+AGG - chr4_1:77320069-77320088 Msa0573990:intron 35.0%
CAAGAAGTAATAACGTCTGT+TGG - chr4_1:77320126-77320145 Msa0573990:intron 35.0%
AGACAAGACTAAGACACAAA+AGG + chr4_1:77320226-77320245 None:intergenic 35.0%
!! CTTAGTCTTGTCTTAGAAGA+TGG - chr4_1:77320233-77320252 Msa0573990:intron 35.0%
ATTAGATCAGGAAATGCTAC+TGG - chr4_1:77320376-77320395 Msa0573990:intron 35.0%
CAGGAAGAGTGAGTTTATTA+AGG + chr4_1:77320488-77320507 None:intergenic 35.0%
! ACTTGAAGGTCCAATTTTAC+TGG + chr4_1:77320678-77320697 None:intergenic 35.0%
AACCAGAAAATTACCATGCT+TGG + chr4_1:77320746-77320765 None:intergenic 35.0%
GCTTCACATATCTATTCTTC+TGG + chr4_1:77320915-77320934 None:intergenic 35.0%
AATTGCATAGCTCCTATTTG+AGG - chr4_1:77321038-77321057 Msa0573990:CDS 35.0%
AACATGTAAAGGCCTCAAAT+AGG + chr4_1:77321053-77321072 None:intergenic 35.0%
AGGAAAGAAGCAACATGTAA+AGG + chr4_1:77321064-77321083 None:intergenic 35.0%
GTATGAAATACAGACTATCC+AGG - chr4_1:77321112-77321131 Msa0573990:intron 35.0%
AAATTTAAACCAAGCTGCGT+TGG + chr4_1:77321281-77321300 None:intergenic 35.0%
! TACACTTGCATTTTTACAGC+TGG - chr4_1:77321452-77321471 Msa0573990:CDS 35.0%
ACATCATCTGTCTTTCATGA+TGG - chr4_1:77321559-77321578 Msa0573990:intron 35.0%
!!! AGGCAAATATTTTGGCTGAA+AGG - chr4_1:77321635-77321654 Msa0573990:intron 35.0%
CTGAAAGGTCACTGAAATAA+TGG - chr4_1:77321650-77321669 Msa0573990:intron 35.0%
!! TTGCCTTTTATTTGGGTGAT+CGG - chr4_1:77321737-77321756 Msa0573990:intron 35.0%
CTGAAGCAGAACTTATCAAT+AGG + chr4_1:77321861-77321880 None:intergenic 35.0%
ACAAGCACTTCTTTACTTGT+AGG - chr4_1:77322008-77322027 Msa0573990:intron 35.0%
TTCATGTGTGATTCAAGGTT+TGG - chr4_1:77322105-77322124 Msa0573990:CDS 35.0%
!! GTCCATACTTTTACTTTTGC+AGG - chr4_1:77322200-77322219 Msa0573990:intron 35.0%
GTGGCATTCATAAATTTCAG+TGG + chr4_1:77322236-77322255 None:intergenic 35.0%
ATAAGTCAGCATAAGCATTC+TGG - chr4_1:77322296-77322315 Msa0573990:CDS 35.0%
GAATCTGTTGGAAAAGTTGA+AGG - chr4_1:77322708-77322727 Msa0573990:intron 35.0%
! CATGTCTTTTCGTAACCTTA+AGG + chr4_1:77322929-77322948 None:intergenic 35.0%
CTTAAGGTTACGAAAAGACA+TGG - chr4_1:77322927-77322946 Msa0573990:exon 35.0%
TTCCAGAATCTAGTGCAAGA+GGG + chr4_1:77317287-77317306 None:intergenic 40.0%
CTGGAACCTTCTTCAAAACA+TGG - chr4_1:77317301-77317320 Msa0573990:three_prime_UTR 40.0%
TCCTTCGGTGAAATTTACCT+CGG - chr4_1:77317374-77317393 Msa0573990:three_prime_UTR 40.0%
!! GTATTGTTCTAAGGAGGTAG+TGG - chr4_1:77317778-77317797 Msa0573990:three_prime_UTR 40.0%
! ATGCCAAACCATTTTAAGCC+TGG + chr4_1:77317852-77317871 None:intergenic 40.0%
!! GTGCTTGCTATCGATTTACT+TGG - chr4_1:77317888-77317907 Msa0573990:three_prime_UTR 40.0%
TAAACCCGATAACTTCCTCA+TGG - chr4_1:77318139-77318158 Msa0573990:three_prime_UTR 40.0%
AAACCCGATAACTTCCTCAT+GGG - chr4_1:77318140-77318159 Msa0573990:three_prime_UTR 40.0%
AAGTCCCATGAGGAAGTTAT+CGG + chr4_1:77318147-77318166 None:intergenic 40.0%
AGCAACAAGTAGTTGACTGA+CGG + chr4_1:77318224-77318243 None:intergenic 40.0%
TTTATTCCACTAAGTGGGGT+CGG - chr4_1:77318284-77318303 Msa0573990:three_prime_UTR 40.0%
TCACAAAAACTAAGGAGGTG+GGG + chr4_1:77318571-77318590 None:intergenic 40.0%
GTCACAAAAACTAAGGAGGT+GGG + chr4_1:77318572-77318591 None:intergenic 40.0%
AGTCACAAAAACTAAGGAGG+TGG + chr4_1:77318573-77318592 None:intergenic 40.0%
! TAAGCTTTTGTTCTCCCTGT+AGG + chr4_1:77318607-77318626 None:intergenic 40.0%
AGGGAGAACAAAAGCTTAAC+AGG - chr4_1:77318609-77318628 Msa0573990:three_prime_UTR 40.0%
GGGAGAACAAAAGCTTAACA+GGG - chr4_1:77318610-77318629 Msa0573990:three_prime_UTR 40.0%
GCAAGTTGCAATACTCATCT+TGG - chr4_1:77318645-77318664 Msa0573990:three_prime_UTR 40.0%
TGCAATACTCATCTTGGGAT+TGG - chr4_1:77318651-77318670 Msa0573990:three_prime_UTR 40.0%
GTACTTCTGTACTTCCTTAG+AGG - chr4_1:77318794-77318813 Msa0573990:three_prime_UTR 40.0%
TTCTGTACTTCCTTAGAGGA+AGG - chr4_1:77318798-77318817 Msa0573990:three_prime_UTR 40.0%
TACTTCCTTAGAGGAAGGTA+TGG - chr4_1:77318803-77318822 Msa0573990:three_prime_UTR 40.0%
GCTTAAATACTGACCTCGAT+AGG + chr4_1:77319019-77319038 None:intergenic 40.0%
TTTACTTTATTCAGGGGGGA+GGG + chr4_1:77319065-77319084 None:intergenic 40.0%
! TTTTACTTTATTCAGGGGGG+AGG + chr4_1:77319066-77319085 None:intergenic 40.0%
ATGTCAATGAGTGGCAGTAA+TGG + chr4_1:77319166-77319185 None:intergenic 40.0%
GCTGATCAAATGTCAATGAG+TGG + chr4_1:77319175-77319194 None:intergenic 40.0%
CGCTTCAAGAATCCATAATC+AGG + chr4_1:77319200-77319219 None:intergenic 40.0%
AATCACCTTCACGAGCAAAT+AGG + chr4_1:77319235-77319254 None:intergenic 40.0%
AATTTGTCGAATACACCCGA+AGG - chr4_1:77319363-77319382 Msa0573990:intron 40.0%
AGTTAGCAAGGTATACCTTC+GGG + chr4_1:77319381-77319400 None:intergenic 40.0%
TTCGCAGATGTAAGTTAGCA+AGG + chr4_1:77319393-77319412 None:intergenic 40.0%
GACATTGAGGAGGTTAGATT+AGG - chr4_1:77319604-77319623 Msa0573990:CDS 40.0%
TCCCCATTCTTGAGAAAATG+AGG + chr4_1:77319636-77319655 None:intergenic 40.0%
! ATTTGGTACCGAAGATCAGA+GGG + chr4_1:77319712-77319731 None:intergenic 40.0%
! TATTTGGTACCGAAGATCAG+AGG + chr4_1:77319713-77319732 None:intergenic 40.0%
TAAAGGAAAAACAGAGGGAG+AGG + chr4_1:77319744-77319763 None:intergenic 40.0%
!!! AGTTTTGTTGACAACCTGCA+AGG - chr4_1:77320185-77320204 Msa0573990:CDS 40.0%
GTCTTGTCTTAGAAGATGGA+TGG - chr4_1:77320237-77320256 Msa0573990:intron 40.0%
TTTCATGCATATTCAGGGCA+TGG - chr4_1:77320343-77320362 Msa0573990:intron 40.0%
TTCATGCATATTCAGGGCAT+GGG - chr4_1:77320344-77320363 Msa0573990:intron 40.0%
GTCAGAACTCAAGTTTCTAC+CGG + chr4_1:77320434-77320453 None:intergenic 40.0%
TGTCTTACATTCTTGTCACG+AGG + chr4_1:77320460-77320479 None:intergenic 40.0%
!!! TTCCTTTTTGAAGTACCAGC+AGG + chr4_1:77320602-77320621 None:intergenic 40.0%
AAATTGGACCTTCAAGTAGC+TGG - chr4_1:77320681-77320700 Msa0573990:intron 40.0%
TTCCAAATGAATGCCAAGCA+TGG - chr4_1:77320730-77320749 Msa0573990:intron 40.0%
TACCATGCTTGGCATTCATT+TGG + chr4_1:77320735-77320754 None:intergenic 40.0%
! TGCCAAGCATGGTAATTTTC+TGG - chr4_1:77320741-77320760 Msa0573990:intron 40.0%
CAGCAAAAGGGACAAAACAA+CGG + chr4_1:77320808-77320827 None:intergenic 40.0%
CAAAACTCACAGCAGCAAAA+GGG + chr4_1:77320820-77320839 None:intergenic 40.0%
ACAAAACTCACAGCAGCAAA+AGG + chr4_1:77320821-77320840 None:intergenic 40.0%
ATCTTCATACGATTCAAGCC+TGG + chr4_1:77320890-77320909 None:intergenic 40.0%
AAGTGGTGTATTCATGGACA+TGG - chr4_1:77320987-77321006 Msa0573990:intron 40.0%
! TACATGTTGCTTCTTTCCTG+TGG - chr4_1:77321065-77321084 Msa0573990:CDS 40.0%
! TTTTTGTAGTCAGTCACCAC+AGG + chr4_1:77321084-77321103 None:intergenic 40.0%
AAATACAGACTATCCAGGCT+TGG - chr4_1:77321117-77321136 Msa0573990:intron 40.0%
AATACAGACTATCCAGGCTT+GGG - chr4_1:77321118-77321137 Msa0573990:intron 40.0%
CTGTACATAGATGTCAGATG+TGG - chr4_1:77321149-77321168 Msa0573990:intron 40.0%
TTGGCACTTATCATATGGCA+CGG + chr4_1:77321262-77321281 None:intergenic 40.0%
!! GGTTTCTTGTGAGGTATTGA+AGG - chr4_1:77321671-77321690 Msa0573990:intron 40.0%
CATCCGATCACCCAAATAAA+AGG + chr4_1:77321743-77321762 None:intergenic 40.0%
AACTTATCAATAGGCAGGAC+AGG + chr4_1:77321852-77321871 None:intergenic 40.0%
AGCAGAACTTATCAATAGGC+AGG + chr4_1:77321857-77321876 None:intergenic 40.0%
GCCCTGCAAAAGTAAAAGTA+TGG + chr4_1:77322205-77322224 None:intergenic 40.0%
TGGGTATGTTCCTTAGATAG+TGG + chr4_1:77322255-77322274 None:intergenic 40.0%
TTCTGGATGAAAATACGCCA+AGG - chr4_1:77322313-77322332 Msa0573990:CDS 40.0%
TACACTGAAGCAGCATAACT+AGG + chr4_1:77322431-77322450 None:intergenic 40.0%
CTGCTTCAGTGTAAGAATCT+TGG - chr4_1:77322438-77322457 Msa0573990:intron 40.0%
! CATCCGATACCTTTGATAGT+GGG - chr4_1:77322590-77322609 Msa0573990:intron 40.0%
!! ATCCGATACCTTTGATAGTG+GGG - chr4_1:77322591-77322610 Msa0573990:intron 40.0%
CTGTTGGAAAAGTTGAAGGT+TGG - chr4_1:77322712-77322731 Msa0573990:intron 40.0%
TCCTGAAGTATAACGAGCTT+TGG - chr4_1:77322737-77322756 Msa0573990:CDS 40.0%
TCCAAAGCTCGTTATACTTC+AGG + chr4_1:77322741-77322760 None:intergenic 40.0%
ATATGAATGTCAGTCCGACA+AGG - chr4_1:77322867-77322886 Msa0573990:CDS 40.0%
TGCTATCCAAAAGACCTTGT+CGG + chr4_1:77322884-77322903 None:intergenic 40.0%
CTAGCACAAAACACTGATCA+GGG + chr4_1:77322954-77322973 None:intergenic 40.0%
ACTAGCACAAAACACTGATC+AGG + chr4_1:77322955-77322974 None:intergenic 40.0%
! ATCAGTGTTTTGTGCTAGTC+TGG - chr4_1:77322956-77322975 Msa0573990:five_prime_UTR 40.0%
!! TGTTTTGTGCTAGTCTGGAT+GGG - chr4_1:77322961-77322980 Msa0573990:five_prime_UTR 40.0%
AGTTAAAGAGCAGACCTTTC+TGG - chr4_1:77322992-77323011 Msa0573990:five_prime_UTR 40.0%
ATGAAACAAGCCATCCAGAA+AGG + chr4_1:77323009-77323028 None:intergenic 40.0%
! TATACTCTGGTTTGTGGCTC+TGG - chr4_1:77317214-77317233 Msa0573990:three_prime_UTR 45.0%
AGAATCTAGTGCAAGAGGGA+GGG + chr4_1:77317283-77317302 None:intergenic 45.0%
GTTCCAGAATCTAGTGCAAG+AGG + chr4_1:77317288-77317307 None:intergenic 45.0%
!!! TGCGCTCCATGTTTTGAAGA+AGG + chr4_1:77317310-77317329 None:intergenic 45.0%
AAGATCGGAAGTGGATCCTT+CGG - chr4_1:77317359-77317378 Msa0573990:three_prime_UTR 45.0%
ACCGAGGTAAATTTCACCGA+AGG + chr4_1:77317378-77317397 None:intergenic 45.0%
! GATTTCGTGTTTCTTGGTGC+AGG - chr4_1:77317819-77317838 Msa0573990:three_prime_UTR 45.0%
GTGGCATTCCAGGCTTAAAA+TGG - chr4_1:77317841-77317860 Msa0573990:three_prime_UTR 45.0%
! ATGGTTTGGCATAGATAGGG+AGG - chr4_1:77317860-77317879 Msa0573990:three_prime_UTR 45.0%
AGTCCCATGAGGAAGTTATC+GGG + chr4_1:77318146-77318165 None:intergenic 45.0%
GATAACTTCCTCATGGGACT+TGG - chr4_1:77318146-77318165 Msa0573990:three_prime_UTR 45.0%
GCAACAAGTAGTTGACTGAC+GGG + chr4_1:77318223-77318242 None:intergenic 45.0%
!! TTGGGCTAGCAAAACGGTAT+CGG - chr4_1:77318407-77318426 Msa0573990:three_prime_UTR 45.0%
AGAACTACCTGTAAGGGATG+TGG + chr4_1:77318450-77318469 None:intergenic 45.0%
GCAAAGTAGACGGGATGATT+TGG - chr4_1:77318757-77318776 Msa0573990:three_prime_UTR 45.0%
! CGGGATGATTTGGAATCACT+AGG - chr4_1:77318767-77318786 Msa0573990:three_prime_UTR 45.0%
GAATGCCATACCTTCCTCTA+AGG + chr4_1:77318811-77318830 None:intergenic 45.0%
! TTGTTTAGCCTTCCTTGGCA+AGG - chr4_1:77318932-77318951 Msa0573990:three_prime_UTR 45.0%
TTACTTTATTCAGGGGGGAG+GGG + chr4_1:77319064-77319083 None:intergenic 45.0%
TTTGATCAGCGGCCTGATTA+TGG - chr4_1:77319185-77319204 Msa0573990:three_prime_UTR 45.0%
AGAGACCTATTTGCTCGTGA+AGG - chr4_1:77319227-77319246 Msa0573990:three_prime_UTR 45.0%
TTCAAAGAGGTCATGTGGCA+AGG - chr4_1:77319582-77319601 Msa0573990:CDS 45.0%
! GTTTTCCTCCCTCTGATCTT+CGG - chr4_1:77319701-77319720 Msa0573990:intron 45.0%
CATCCATTGCTACTGCATGA+CGG + chr4_1:77320032-77320051 None:intergenic 45.0%
TTGTTGACAACCTGCAAGGT+TGG - chr4_1:77320189-77320208 Msa0573990:CDS 45.0%
TCATGCATATTCAGGGCATG+GGG - chr4_1:77320345-77320364 Msa0573990:intron 45.0%
!! TCAGGAAATGCTACTGGTTC+TGG - chr4_1:77320382-77320401 Msa0573990:intron 45.0%
GTTCAGTTCAAATCACCAGC+CGG - chr4_1:77320412-77320431 Msa0573990:CDS 45.0%
CTCCTGCTGGTACTTCAAAA+AGG - chr4_1:77320597-77320616 Msa0573990:intron 45.0%
AACCTTCCAACACTGGACAT+GGG - chr4_1:77320648-77320667 Msa0573990:intron 45.0%
CATGGGCAAGCCAGTAAAAT+TGG - chr4_1:77320665-77320684 Msa0573990:intron 45.0%
GATGACATCCAGCTACTTGA+AGG + chr4_1:77320692-77320711 None:intergenic 45.0%
! CGCATCTTTCCCAAAGTGTT+TGG - chr4_1:77320952-77320971 Msa0573990:intron 45.0%
TGACATCTATGTACAGCACC+GGG + chr4_1:77321145-77321164 None:intergenic 45.0%
CTGACATCTATGTACAGCAC+CGG + chr4_1:77321146-77321165 None:intergenic 45.0%
TGGCACTTATCATATGGCAC+GGG + chr4_1:77321261-77321280 None:intergenic 45.0%
! CTGCGTTGGCACTTATCATA+TGG + chr4_1:77321267-77321286 None:intergenic 45.0%
!! GAGGTATTGAAGGCAGTTCT+TGG - chr4_1:77321681-77321700 Msa0573990:intron 45.0%
GTATTGAAGGCAGTTCTTGG+TGG - chr4_1:77321684-77321703 Msa0573990:intron 45.0%
!! CCACTATCAAAGGTATCGGA+TGG + chr4_1:77322592-77322611 None:intergenic 45.0%
CCATCCGATACCTTTGATAG+TGG - chr4_1:77322589-77322608 Msa0573990:intron 45.0%
!!! TGTTTTGGCCCCACTATCAA+AGG + chr4_1:77322602-77322621 None:intergenic 45.0%
TATGCAGGGATATGGGATTG+TGG + chr4_1:77322661-77322680 None:intergenic 45.0%
CAATCCCATATCCCTGCATA+TGG - chr4_1:77322661-77322680 Msa0573990:intron 45.0%
ATTGTGTCCGTCCATATGCA+GGG + chr4_1:77322675-77322694 None:intergenic 45.0%
CTTGAGAAAGTCTTGCAGCA+AGG - chr4_1:77322778-77322797 Msa0573990:intron 45.0%
!! GTGTTTTGTGCTAGTCTGGA+TGG - chr4_1:77322960-77322979 Msa0573990:five_prime_UTR 45.0%
AAAGAGCAGACCTTTCTGGA+TGG - chr4_1:77322996-77323015 Msa0573990:five_prime_UTR 45.0%
GCTTCGGCAATGGAGAATGA+AGG + chr4_1:77317245-77317264 None:intergenic 50.0%
GTTTCTTGTGAGTGCGGCTT+CGG + chr4_1:77317261-77317280 None:intergenic 50.0%
CAGAATCTAGTGCAAGAGGG+AGG + chr4_1:77317284-77317303 None:intergenic 50.0%
CTCCCTCTTGCACTAGATTC+TGG - chr4_1:77317282-77317301 Msa0573990:three_prime_UTR 50.0%
CAAAACATGGAGCGCATCGT+TGG - chr4_1:77317314-77317333 Msa0573990:three_prime_UTR 50.0%
TACAAGCTTGGCCGCAAGAT+CGG - chr4_1:77317344-77317363 Msa0573990:three_prime_UTR 50.0%
AGGATCCACTTCCGATCTTG+CGG + chr4_1:77317358-77317377 None:intergenic 50.0%
AAGAGAGAGGATAGTCACCG+AGG + chr4_1:77317394-77317413 None:intergenic 50.0%
TTTGACGGCGACGATTTCGA+AGG + chr4_1:77317503-77317522 None:intergenic 50.0%
! GCATCCACAGTTGCTTTACG+AGG - chr4_1:77317692-77317711 Msa0573990:three_prime_UTR 50.0%
TTGGCCTCGTAAAGCAACTG+TGG + chr4_1:77317699-77317718 None:intergenic 50.0%
! TTCGTGTTTCTTGGTGCAGG+TGG - chr4_1:77317822-77317841 Msa0573990:three_prime_UTR 50.0%
! ACTTCCTCATGGGACTTGGT+CGG - chr4_1:77318150-77318169 Msa0573990:three_prime_UTR 50.0%
! ACTGACGGGCAAGTTCAACT+GGG + chr4_1:77318209-77318228 None:intergenic 50.0%
!! TGGGCTAGCAAAACGGTATC+GGG - chr4_1:77318408-77318427 Msa0573990:three_prime_UTR 50.0%
! TCTTGAGAAACAGCGGGTTC+TGG + chr4_1:77318866-77318885 None:intergenic 50.0%
CCTTCCTTGGCAAGGTCTAA+GGG - chr4_1:77318940-77318959 Msa0573990:three_prime_UTR 50.0%
!! GAAGGTATCGACTCCTATCG+AGG - chr4_1:77319003-77319022 Msa0573990:three_prime_UTR 50.0%
TACTTTATTCAGGGGGGAGG+GGG + chr4_1:77319063-77319082 None:intergenic 50.0%
! GCAATTGTTTCTTGGGGGCA+TGG - chr4_1:77319313-77319332 Msa0573990:three_prime_UTR 50.0%
GTCATGTGGCAAGGACATTG+AGG - chr4_1:77319591-77319610 Msa0573990:CDS 50.0%
ATGTGGCAAGGACATTGAGG+AGG - chr4_1:77319594-77319613 Msa0573990:CDS 50.0%
TGGGACTGAGGGGTTACTAA+TGG - chr4_1:77319929-77319948 Msa0573990:intron 50.0%
TCTTTACCACAGCCAGTTCC+TGG - chr4_1:77319997-77320016 Msa0573990:intron 50.0%
CAACCGTCATGCAGTAGCAA+TGG - chr4_1:77320026-77320045 Msa0573990:intron 50.0%
! ACCTGCAAGGTTGGCTGAAT+CGG - chr4_1:77320198-77320217 Msa0573990:CDS 50.0%
GGGGAAGAGCGAATTAGATC+AGG - chr4_1:77320364-77320383 Msa0573990:intron 50.0%
GAACTCAAGTTTCTACCGGC+TGG + chr4_1:77320430-77320449 None:intergenic 50.0%
! AGCAGGAGCATAAGAAGCAG+AGG + chr4_1:77320585-77320604 None:intergenic 50.0%
TCTGCTTCTTATGCTCCTGC+TGG - chr4_1:77320584-77320603 Msa0573990:intron 50.0%
CAGACAAGGCAGGGTTTAAG+GGG + chr4_1:77320625-77320644 None:intergenic 50.0%
GCAGACAAGGCAGGGTTTAA+GGG + chr4_1:77320626-77320645 None:intergenic 50.0%
AGCAGACAAGGCAGGGTTTA+AGG + chr4_1:77320627-77320646 None:intergenic 50.0%
AAGGTTCAGCAGACAAGGCA+GGG + chr4_1:77320634-77320653 None:intergenic 50.0%
GTTGGAAGGTTCAGCAGACA+AGG + chr4_1:77320639-77320658 None:intergenic 50.0%
TCTGCTGAACCTTCCAACAC+TGG - chr4_1:77320641-77320660 Msa0573990:intron 50.0%
GAACCTTCCAACACTGGACA+TGG - chr4_1:77320647-77320666 Msa0573990:intron 50.0%
GATATGTGAAGCTGCACACG+TGG - chr4_1:77320923-77320942 Msa0573990:intron 50.0%
GGCACTTATCATATGGCACG+GGG + chr4_1:77321260-77321279 None:intergenic 50.0%
TGATAAGTGCCAACGCAGCT+TGG - chr4_1:77321269-77321288 Msa0573990:CDS 50.0%
GCACAATTTGACACTTGCCC+AGG - chr4_1:77322033-77322052 Msa0573990:intron 50.0%
ATCAGAAGCAGCAGCGTCAT+GGG + chr4_1:77322274-77322293 None:intergenic 50.0%
! GTGCAAAGTATCCCCCTATC+TGG - chr4_1:77322530-77322549 Msa0573990:CDS 50.0%
! GGCCCCACTATCAAAGGTAT+CGG + chr4_1:77322596-77322615 None:intergenic 50.0%
GGGATTGTGGAACCATCGAT+TGG + chr4_1:77322648-77322667 None:intergenic 50.0%
CCGTCCATATGCAGGGATAT+GGG + chr4_1:77322668-77322687 None:intergenic 50.0%
CCCATATCCCTGCATATGGA+CGG - chr4_1:77322665-77322684 Msa0573990:intron 50.0%
TCCGTCCATATGCAGGGATA+TGG + chr4_1:77322669-77322688 None:intergenic 50.0%
GATTGTGTCCGTCCATATGC+AGG + chr4_1:77322676-77322695 None:intergenic 50.0%
! GTCAGTCCGACAAGGTCTTT+TGG - chr4_1:77322875-77322894 Msa0573990:CDS 50.0%
GGGAGGGTTTCTTGTGAGTG+CGG + chr4_1:77317267-77317286 None:intergenic 55.0%
AACATGGAGCGCATCGTTGG+CGG - chr4_1:77317317-77317336 Msa0573990:three_prime_UTR 55.0%
! GACTGACGGGCAAGTTCAAC+TGG + chr4_1:77318210-77318229 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr4_1:77318293-77318312 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr4_1:77318292-77318311 Msa0573990:three_prime_UTR 55.0%
! AGGGATGTGGCGATTGGTTG+TGG + chr4_1:77318437-77318456 None:intergenic 55.0%
CCTGTAAGGGATGTGGCGAT+TGG + chr4_1:77318443-77318462 None:intergenic 55.0%
CCAATCGCCACATCCCTTAC+AGG - chr4_1:77318440-77318459 Msa0573990:three_prime_UTR 55.0%
GCCTTCCTTGGCAAGGTCTA+AGG - chr4_1:77318939-77318958 Msa0573990:three_prime_UTR 55.0%
CCCTTAGACCTTGCCAAGGA+AGG + chr4_1:77318943-77318962 None:intergenic 55.0%
! TGGTACCGAAGATCAGAGGG+AGG + chr4_1:77319709-77319728 None:intergenic 55.0%
TCCGATTCAGCCAACCTTGC+AGG + chr4_1:77320202-77320221 None:intergenic 55.0%
GAAGGTTCAGCAGACAAGGC+AGG + chr4_1:77320635-77320654 None:intergenic 55.0%
! TGCCCATGTCCAGTGTTGGA+AGG + chr4_1:77320653-77320672 None:intergenic 55.0%
CATGGAGACTGTGACTGTGC+TGG - chr4_1:77321005-77321024 Msa0573990:CDS 55.0%
GAGACTGTGACTGTGCTGGA+AGG - chr4_1:77321009-77321028 Msa0573990:CDS 55.0%
CTGTGACTGTGCTGGAAGGT+TGG - chr4_1:77321013-77321032 Msa0573990:CDS 55.0%
CATCAGAAGCAGCAGCGTCA+TGG + chr4_1:77322275-77322294 None:intergenic 55.0%
TGTGAGTGCGGCTTCGGCAA+TGG + chr4_1:77317255-77317274 None:intergenic 60.0%
GTTGGCGGCAGCTACAAGCT+TGG - chr4_1:77317332-77317351 Msa0573990:three_prime_UTR 60.0%
CTTGGCCGCAAGATCGGAAG+TGG - chr4_1:77317350-77317369 Msa0573990:three_prime_UTR 60.0%
! CTTGGTGCAGGTGGCATTCC+AGG - chr4_1:77317831-77317850 Msa0573990:three_prime_UTR 60.0%
CCTTCCGACCAAGTCCCATG+AGG + chr4_1:77318157-77318176 None:intergenic 60.0%
! CCTCATGGGACTTGGTCGGA+AGG - chr4_1:77318154-77318173 Msa0573990:three_prime_UTR 60.0%
ACTTGGTCGGAAGGCCAACC+AGG - chr4_1:77318163-77318182 Msa0573990:three_prime_UTR 60.0%
GACGGGCAAGTTCAACTGGG+TGG + chr4_1:77318206-77318225 None:intergenic 60.0%
GCAGCCCTTAGACCTTGCCA+AGG + chr4_1:77318947-77318966 None:intergenic 60.0%
CTTGCACCAGGAACTGGCTG+TGG + chr4_1:77320006-77320025 None:intergenic 60.0%
CGGTTGCTTGCACCAGGAAC+TGG + chr4_1:77320012-77320031 None:intergenic 60.0%
GCATGACGGTTGCTTGCACC+AGG + chr4_1:77320018-77320037 None:intergenic 60.0%
GGCTTGCCCATGTCCAGTGT+TGG + chr4_1:77320657-77320676 None:intergenic 60.0%
GACTATCCAGGCTTGGGTCC+CGG - chr4_1:77321124-77321143 Msa0573990:intron 60.0%
! ACAGCACCGGGACCCAAGCC+TGG + chr4_1:77321133-77321152 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 77317186 77323064 77317186 ID=Msa0573990;Name=Msa0573990
chr4_1 mRNA 77317186 77323064 77317186 ID=Msa0573990-mRNA-1;Parent=Msa0573990;Name=Msa0573990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=134|0.85|0.8|1|0.78|0.73|15|2101|399
chr4_1 exon 77317186 77318028 77317186 ID=Msa0573990-mRNA-1:exon:27243;Parent=Msa0573990-mRNA-1
chr4_1 exon 77318129 77319374 77318129 ID=Msa0573990-mRNA-1:exon:27242;Parent=Msa0573990-mRNA-1
chr4_1 exon 77319499 77319690 77319499 ID=Msa0573990-mRNA-1:exon:27241;Parent=Msa0573990-mRNA-1
chr4_1 exon 77319779 77319891 77319779 ID=Msa0573990-mRNA-1:exon:27240;Parent=Msa0573990-mRNA-1
chr4_1 exon 77320184 77320241 77320184 ID=Msa0573990-mRNA-1:exon:27239;Parent=Msa0573990-mRNA-1
chr4_1 exon 77320394 77320476 77320394 ID=Msa0573990-mRNA-1:exon:27238;Parent=Msa0573990-mRNA-1
chr4_1 exon 77321002 77321128 77321002 ID=Msa0573990-mRNA-1:exon:27237;Parent=Msa0573990-mRNA-1
chr4_1 exon 77321226 77321310 77321226 ID=Msa0573990-mRNA-1:exon:27236;Parent=Msa0573990-mRNA-1
chr4_1 exon 77321431 77321494 77321431 ID=Msa0573990-mRNA-1:exon:27235;Parent=Msa0573990-mRNA-1
chr4_1 exon 77321578 77321635 77321578 ID=Msa0573990-mRNA-1:exon:27234;Parent=Msa0573990-mRNA-1
chr4_1 exon 77322066 77322161 77322066 ID=Msa0573990-mRNA-1:exon:27233;Parent=Msa0573990-mRNA-1
chr4_1 exon 77322261 77322409 77322261 ID=Msa0573990-mRNA-1:exon:27232;Parent=Msa0573990-mRNA-1
chr4_1 exon 77322506 77322575 77322506 ID=Msa0573990-mRNA-1:exon:27231;Parent=Msa0573990-mRNA-1
chr4_1 exon 77322725 77322765 77322725 ID=Msa0573990-mRNA-1:exon:27230;Parent=Msa0573990-mRNA-1
chr4_1 exon 77322855 77323064 77322855 ID=Msa0573990-mRNA-1:exon:27229;Parent=Msa0573990-mRNA-1
chr4_1 five_prime_UTR 77322931 77323064 77322931 ID=Msa0573990-mRNA-1:five_prime_utr;Parent=Msa0573990-mRNA-1
chr4_1 CDS 77322855 77322930 77322855 ID=Msa0573990-mRNA-1:cds;Parent=Msa0573990-mRNA-1
chr4_1 CDS 77322725 77322765 77322725 ID=Msa0573990-mRNA-1:cds;Parent=Msa0573990-mRNA-1
chr4_1 CDS 77322506 77322575 77322506 ID=Msa0573990-mRNA-1:cds;Parent=Msa0573990-mRNA-1
chr4_1 CDS 77322261 77322409 77322261 ID=Msa0573990-mRNA-1:cds;Parent=Msa0573990-mRNA-1
chr4_1 CDS 77322066 77322161 77322066 ID=Msa0573990-mRNA-1:cds;Parent=Msa0573990-mRNA-1
chr4_1 CDS 77321578 77321635 77321578 ID=Msa0573990-mRNA-1:cds;Parent=Msa0573990-mRNA-1
chr4_1 CDS 77321431 77321494 77321431 ID=Msa0573990-mRNA-1:cds;Parent=Msa0573990-mRNA-1
chr4_1 CDS 77321226 77321310 77321226 ID=Msa0573990-mRNA-1:cds;Parent=Msa0573990-mRNA-1
chr4_1 CDS 77321002 77321128 77321002 ID=Msa0573990-mRNA-1:cds;Parent=Msa0573990-mRNA-1
chr4_1 CDS 77320394 77320476 77320394 ID=Msa0573990-mRNA-1:cds;Parent=Msa0573990-mRNA-1
chr4_1 CDS 77320184 77320241 77320184 ID=Msa0573990-mRNA-1:cds;Parent=Msa0573990-mRNA-1
chr4_1 CDS 77319779 77319891 77319779 ID=Msa0573990-mRNA-1:cds;Parent=Msa0573990-mRNA-1
chr4_1 CDS 77319511 77319690 77319511 ID=Msa0573990-mRNA-1:cds;Parent=Msa0573990-mRNA-1
chr4_1 three_prime_UTR 77319499 77319510 77319499 ID=Msa0573990-mRNA-1:three_prime_utr;Parent=Msa0573990-mRNA-1
chr4_1 three_prime_UTR 77318129 77319374 77318129 ID=Msa0573990-mRNA-1:three_prime_utr;Parent=Msa0573990-mRNA-1
chr4_1 three_prime_UTR 77317186 77318028 77317186 ID=Msa0573990-mRNA-1:three_prime_utr;Parent=Msa0573990-mRNA-1
Gene Sequence

>Msa0573990

ATGGAGCGCATCGTTGGCGGCAGCTACAAGCTTGGCCGCAAGATCGGAAGTGGATCCTTCGGTGAAATTTACCTCGCTACGCATATTGATACCTTCGAAATCGTCGCCGTCAAAATCGAGAATAGTAAAACAAAGCATCCACAGTTGCTTTACGAGGCCAAGCTCTACAATATTCTTCAAGGAGGAAGTGGCATTCCAGGCTTAAAATGGTTTGGCATAGATAGGGAGGATAACGTGCTTGCTATCGATTTACTTGGGCCTAGTCTTGAAGATCTTTTTGTTTATTGTGGAAGGAAGTTTTCGTTGAAGACTGTGTTAATGTTAGCTGATCAAATGATCACTAGAATTGAATATGTGCATTCTAAAGGATATTTGCATAGGGATATTAAACCCGATAACTTCCTCATGGGACTTGGTCGGAAGGCCAACCAGAACAAAAGCTTAACAGGGACTGCTCGATATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTAGACGGGATGATTTGGAATCACTAGGATATGTACTTCTGTACTTCCTTAGAGGAAGCCTTCCTTGGCAAGGTCTAAGGGCTGCAACAAAGAAACAGAAGTATGAAAAAATATGTCAGAAGAAGGTATCGACTCCTATCGAGGTACTATGCAAATCTCATCCAGTAGAGTTTGCTTCATACTTCCATTACTGCCACTCATTGACATTTGATCAGCGGCCTGATTATGGATTCTTGAAGCGCTTATTTAGAGACCTATTTGCTCGTGAAGGCTATGAATTTGATTTCGTTTTTGATTGGACCATTTTAAAGTATCAGCAATCACAGAAGAATTTAGTTCAGCCTTCCTTATCTCCAGTTCCTGGTGCAAGCAACCGTCATGCAGTAGCAATGGATGTTGACAATCATCAAGGGCATGGGGAAGAGCGAATTAGATCAGGAAATGCTACTGGTTCTGGTGTTAAAGTTCAGTTCAAATCACCAGCCGGTAGAAACTTGAGTTCTGACAATCCTCGTGACAAGAATATTTTTGGAGAAGCAAATATGGCCTCTGCTTCTTATGCTCCTGCTGGTACTTCAAAAAGGAACCCCTTAAACCCTGCCTTGTCTGCTGAACCTTCCAACACTGGACATGGGCAAGCCAGTAAAATTGGACCTTCAAGTAGCTGGATGTCATCTCTGCAGCGCATATCTTCTTCCAAATGA
Protein sequence

>Msa0573990

MERIVGGSYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPGLKWFGIDREDNVLAIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGYLHRDIKPDNFLMGLGRKANQNKSLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLRAATKKQKYEKICQKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDFVFDWTILKYQQSQKNLVQPSLSPVPGASNRHAVAMDVDNHQGHGEERIRSGNATGSGVKVQFKSPAGRNLSSDNPRDKNIFGEANMASASYAPAGTSKRNPLNPALSAEPSNTGHGQASKIGPSSSWMSSLQRISSSK*