Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574140 | XP_003630778.3 | 92.409 | 606 | 19 | 4 | 1 | 590 | 1 | 595 | 0.0 | 1128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574140 | sp|Q9SZD1|TCX5_ARATH | 54.479 | 547 | 162 | 16 | 1 | 473 | 1 | 534 | 1.02e-174 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574140 | A0A396GR76 | 92.409 | 606 | 19 | 4 | 1 | 590 | 1 | 595 | 0.0 | 1128 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0574140 | TF | CPP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574140 | MtrunA17_Chr8g0390351 | 92.409 | 606 | 19 | 4 | 1 | 590 | 1 | 595 | 0.0 | 1128 |
| Msa0574140 | MtrunA17_Chr6g0485811 | 62.500 | 608 | 151 | 13 | 1 | 544 | 1 | 595 | 0.0 | 688 |
| Msa0574140 | MtrunA17_Chr3g0139951 | 48.837 | 301 | 144 | 4 | 36 | 329 | 101 | 398 | 1.53e-81 | 261 |
| Msa0574140 | MtrunA17_Chr1g0149101 | 40.462 | 173 | 95 | 5 | 50 | 218 | 469 | 637 | 4.04e-29 | 123 |
| Msa0574140 | MtrunA17_Chr5g0394661 | 44.615 | 130 | 71 | 1 | 83 | 211 | 488 | 617 | 5.99e-29 | 122 |
| Msa0574140 | MtrunA17_Chr1g0205031 | 32.812 | 128 | 85 | 1 | 85 | 211 | 407 | 534 | 5.94e-15 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574140 | AT4G29000.1 | 54.479 | 547 | 162 | 16 | 1 | 473 | 1 | 534 | 1.03e-175 | 511 |
| Msa0574140 | AT2G20110.1 | 49.217 | 575 | 193 | 17 | 1 | 514 | 1 | 537 | 6.30e-164 | 480 |
| Msa0574140 | AT2G20110.3 | 50.000 | 556 | 176 | 16 | 1 | 492 | 1 | 518 | 2.09e-163 | 478 |
| Msa0574140 | AT2G20110.2 | 53.069 | 505 | 155 | 13 | 1 | 461 | 1 | 467 | 1.80e-162 | 476 |
| Msa0574140 | AT5G25790.1 | 42.723 | 426 | 194 | 10 | 47 | 459 | 50 | 438 | 2.88e-100 | 312 |
| Msa0574140 | AT5G25790.2 | 42.723 | 426 | 194 | 10 | 47 | 459 | 50 | 438 | 7.19e-100 | 313 |
| Msa0574140 | AT5G25790.3 | 42.488 | 426 | 191 | 11 | 47 | 459 | 50 | 434 | 1.15e-97 | 305 |
| Msa0574140 | AT3G16160.1 | 31.453 | 461 | 197 | 15 | 24 | 474 | 17 | 368 | 1.29e-41 | 154 |
| Msa0574140 | AT3G22760.2 | 43.114 | 167 | 86 | 5 | 61 | 223 | 184 | 345 | 4.06e-34 | 135 |
| Msa0574140 | AT3G22760.1 | 43.114 | 167 | 86 | 5 | 61 | 223 | 307 | 468 | 6.96e-34 | 137 |
| Msa0574140 | AT4G14770.1 | 44.776 | 134 | 67 | 3 | 83 | 212 | 375 | 505 | 6.65e-32 | 131 |
| Msa0574140 | AT4G14770.3 | 44.776 | 134 | 67 | 3 | 83 | 212 | 356 | 486 | 9.05e-32 | 130 |
| Msa0574140 | AT4G14770.2 | 44.776 | 134 | 67 | 3 | 83 | 212 | 355 | 485 | 9.61e-32 | 130 |
| Msa0574140 | AT3G22780.1 | 44.030 | 134 | 68 | 3 | 83 | 212 | 401 | 531 | 6.59e-31 | 128 |
| Msa0574140 | AT3G04850.1 | 45.736 | 129 | 69 | 1 | 83 | 210 | 453 | 581 | 2.86e-30 | 126 |
Find 172 sgRNAs with CRISPR-Local
Find 455 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGTCTTGTTTCAGAAAA+TGG | 0.136929 | 4_1:+77521311 | Msa0574140:CDS |
| GACTTTGATTTAGGAGATTC+TGG | 0.202009 | 4_1:-77516322 | None:intergenic |
| TAACAATAATCACAACAATT+AGG | 0.206360 | 4_1:-77515657 | None:intergenic |
| TTGGGTCTTGACTTTGATTT+AGG | 0.219084 | 4_1:-77516331 | None:intergenic |
| GTAACCTAATTCCCCTTTCT+AGG | 0.250234 | 4_1:+77521631 | Msa0574140:three_prime_UTR |
| ACAAAATTGATAAAAGAAAA+TGG | 0.262257 | 4_1:-77521521 | None:intergenic |
| ATTACAATTATGTAATTTAC+AGG | 0.269182 | 4_1:-77521591 | None:intergenic |
| GGAGACATTGGCCTCCCTTT+TGG | 0.278244 | 4_1:-77520252 | None:intergenic |
| TCTCCCCATCAGCTTCCTTT+TGG | 0.283654 | 4_1:-77520146 | None:intergenic |
| TTGAGTCTCTAACTCACTTC+TGG | 0.285807 | 4_1:-77520991 | None:intergenic |
| AGGCCCTAGAAAGGGGAATT+AGG | 0.289051 | 4_1:-77521635 | None:intergenic |
| GGAAGTGTCGGCGGTGGTTG+TGG | 0.289843 | 4_1:-77515876 | None:intergenic |
| CAGCTCGATTTCAACGCTTT+TGG | 0.295923 | 4_1:+77515819 | Msa0574140:CDS |
| GATCATGCGGTTGTGGATTA+AGG | 0.296996 | 4_1:-77515431 | None:intergenic |
| TGCTTTGCCGACGTTATTAC+AGG | 0.301052 | 4_1:-77521084 | None:intergenic |
| ACATCTTCACAATTGCCTTA+TGG | 0.308433 | 4_1:+77520363 | Msa0574140:CDS |
| GCAGCCAATGCTGCTATAAC+TGG | 0.312657 | 4_1:+77517627 | Msa0574140:CDS |
| GAAGTGTCGGCGGTGGTTGT+GGG | 0.336832 | 4_1:-77515875 | None:intergenic |
| CGGAACTCTGGCCGTCCATC+AGG | 0.341120 | 4_1:+77517706 | Msa0574140:CDS |
| AACAATAATCACAACAATTA+GGG | 0.349273 | 4_1:-77515656 | None:intergenic |
| TATATCTATTGTTCGACCTT+CGG | 0.358406 | 4_1:-77521344 | None:intergenic |
| GCAGTCTTGTTTCAGAAAAT+GGG | 0.359660 | 4_1:+77521312 | Msa0574140:CDS |
| GGCGGTGGTTGTGGGTGTTC+CGG | 0.362076 | 4_1:-77515867 | None:intergenic |
| CGTGTTGGACCTTCAACATT+AGG | 0.374824 | 4_1:+77518728 | Msa0574140:CDS |
| CACTATCACTTCAACACCTT+TGG | 0.378364 | 4_1:+77521214 | Msa0574140:CDS |
| GCTGCTATAACTGGAGCTAT+TGG | 0.378616 | 4_1:+77517636 | Msa0574140:CDS |
| TGGAGATCAAAACAACAATA+TGG | 0.382902 | 4_1:+77517590 | Msa0574140:CDS |
| CACCATCACTTCAACACCTT+TGG | 0.384125 | 4_1:+77521181 | Msa0574140:CDS |
| TTTCAGTGCAATTGATGATT+GGG | 0.385821 | 4_1:-77521019 | None:intergenic |
| TCCGGCAGAGGTGCAGTTAC+CGG | 0.392618 | 4_1:-77515849 | None:intergenic |
| AAACAGAGCAAAGCTCCTTC+AGG | 0.392877 | 4_1:-77518892 | None:intergenic |
| CACATCAATGCTAAAGTTCC+AGG | 0.399973 | 4_1:-77520273 | None:intergenic |
| CTGCCTAGCAAGCTTCTTAA+CGG | 0.406846 | 4_1:-77515799 | None:intergenic |
| GAAGGTCCAACACGAGGTAC+TGG | 0.411988 | 4_1:-77518719 | None:intergenic |
| AACGCAATCCAAATGCCTTT+AGG | 0.412558 | 4_1:+77516639 | Msa0574140:CDS |
| ACTGGAGCTATTGGTTCCTC+TGG | 0.415396 | 4_1:+77517645 | Msa0574140:CDS |
| TCCATCAGGGATCCATCGTT+TGG | 0.418364 | 4_1:+77517720 | Msa0574140:CDS |
| CGCCATCACTTCTACGCCTT+CGG | 0.418570 | 4_1:+77521247 | Msa0574140:CDS |
| AAAAGAAAATGGATCTTAGT+TGG | 0.421180 | 4_1:-77521510 | None:intergenic |
| CCTCTTCCTGCACCCAAAGT+GGG | 0.422177 | 4_1:+77515900 | Msa0574140:CDS |
| AAAGAAAAGGTTCGGAACTC+TGG | 0.425606 | 4_1:+77517694 | Msa0574140:CDS |
| CGTCACTTCAACAACACCTT+TGG | 0.427483 | 4_1:+77521283 | Msa0574140:CDS |
| TCTTTCGCTCCTTGTCCATA+AGG | 0.429184 | 4_1:-77520378 | None:intergenic |
| TTTGAAGGGCCTAATGTTGA+AGG | 0.430598 | 4_1:-77518737 | None:intergenic |
| TGTATGTGTGTTCTCTGTAA+TGG | 0.430646 | 4_1:+77521425 | Msa0574140:three_prime_UTR |
| AATGCACAAAGCAAAAGAAA+TGG | 0.432596 | 4_1:-77521675 | None:intergenic |
| GCCCTTCAAAATTTATGTAC+AGG | 0.435578 | 4_1:+77518750 | Msa0574140:CDS |
| CAGAACAAAGAATGTTGGCT+TGG | 0.445420 | 4_1:-77517503 | None:intergenic |
| CCTAAGACTGACCCCACTTT+GGG | 0.446599 | 4_1:-77515912 | None:intergenic |
| GCCTAAGACTGACCCCACTT+TGG | 0.446742 | 4_1:-77515913 | None:intergenic |
| AAAAGAAATGGAAAGGAAGA+AGG | 0.450034 | 4_1:-77521663 | None:intergenic |
| TGTGCATTATTAATATAGAA+AGG | 0.453060 | 4_1:+77521690 | Msa0574140:three_prime_UTR |
| AATAACGTCGGCAAAGCAAT+TGG | 0.454926 | 4_1:+77521089 | Msa0574140:CDS |
| TTCAAAAGCTCGTGAGAGAG+AGG | 0.456935 | 4_1:+77515501 | Msa0574140:five_prime_UTR |
| TGGATTAAGGTTCTCATCGT+AGG | 0.457054 | 4_1:-77515418 | None:intergenic |
| AAAGGGAGGCCAATGTCTCC+TGG | 0.459213 | 4_1:+77520255 | Msa0574140:CDS |
| GGCAGCGCAACAGCAAGGAC+TGG | 0.462015 | 4_1:+77521055 | Msa0574140:CDS |
| AAAATGGATCTTAGTTGGAC+TGG | 0.462910 | 4_1:-77521505 | None:intergenic |
| GAGCGACAGGCTTTGTTCCA+TGG | 0.463378 | 4_1:+77517570 | Msa0574140:CDS |
| GCCGGTAACTGCACCTCTGC+CGG | 0.463775 | 4_1:+77515848 | Msa0574140:CDS |
| CTGTTGCGCTGCCTCAGTAC+TGG | 0.464401 | 4_1:-77521045 | None:intergenic |
| CCCACTTTGGGTGCAGGAAG+AGG | 0.467373 | 4_1:-77515900 | None:intergenic |
| TGGTAATTGCTCTTGATTTG+AGG | 0.468628 | 4_1:-77520121 | None:intergenic |
| GGTCGAACAATAGATATAGA+AGG | 0.470732 | 4_1:+77521349 | Msa0574140:exon |
| TGAGCCATCGACGCAGTTGA+GGG | 0.478336 | 4_1:-77520330 | None:intergenic |
| AGATGAGCAGAGGTACCGTT+TGG | 0.479667 | 4_1:+77521382 | Msa0574140:three_prime_UTR |
| GCAGCGCAACAGCAAGGACT+GGG | 0.486221 | 4_1:+77521056 | Msa0574140:CDS |
| AGCTCCAGTTATAGCAGCAT+TGG | 0.488511 | 4_1:-77517631 | None:intergenic |
| GATGGTGCTGATGTTCCAAA+AGG | 0.490293 | 4_1:+77520237 | Msa0574140:intron |
| GTTTGGAAAGCTAGGACAAC+AGG | 0.490764 | 4_1:+77517737 | Msa0574140:CDS |
| AAAGATGAAGAGGGTGCTGC+AGG | 0.491726 | 4_1:-77518686 | None:intergenic |
| CACCATCACTTCAACACCTA+TGG | 0.496104 | 4_1:+77521115 | Msa0574140:CDS |
| CACCATCACTTCAACACCTA+TGG | 0.496104 | 4_1:+77521148 | Msa0574140:CDS |
| GGTTGTGGGTGTTCCGGCAG+AGG | 0.497560 | 4_1:-77515861 | None:intergenic |
| TTTCTGTAGGCTTTAACTGT+AGG | 0.498182 | 4_1:-77521480 | None:intergenic |
| TCCTCTTCCTGCACCCAAAG+TGG | 0.499712 | 4_1:+77515899 | Msa0574140:CDS |
| CGATCGAATGGGTGAAGGTG+AGG | 0.502201 | 4_1:+77515740 | Msa0574140:exon |
| TTCTGAAAACTGTAAATGCA+TGG | 0.504558 | 4_1:+77517521 | Msa0574140:CDS |
| ACTGACCCCACTTTGGGTGC+AGG | 0.507298 | 4_1:-77515906 | None:intergenic |
| ATATAAATGTAGGAGGAGAC+TGG | 0.511871 | 4_1:+77517399 | Msa0574140:intron |
| TGAAGGAAGTGAAGAGCGAC+AGG | 0.515256 | 4_1:+77517557 | Msa0574140:CDS |
| GACTGGGGAAGTTAAAGTAT+TGG | 0.517867 | 4_1:+77517416 | Msa0574140:CDS |
| ATGAGCCATCGACGCAGTTG+AGG | 0.519656 | 4_1:-77520331 | None:intergenic |
| AGATCTATGCAGAGCAAGAG+AGG | 0.519964 | 4_1:+77520400 | Msa0574140:CDS |
| CAGTCTTGTTTCAGAAAATG+GGG | 0.524569 | 4_1:+77521313 | Msa0574140:CDS |
| GATCGAATGGGTGAAGGTGA+GGG | 0.528000 | 4_1:+77515741 | Msa0574140:exon |
| TAACCTAATTCCCCTTTCTA+GGG | 0.528753 | 4_1:+77521632 | Msa0574140:three_prime_UTR |
| AAGTGAGTTAGAGACTCAAA+AGG | 0.529599 | 4_1:+77520995 | Msa0574140:CDS |
| TAAGTTTGATCATGCGGTTG+TGG | 0.530077 | 4_1:-77515438 | None:intergenic |
| AGAGCAATTACCAAACCAAA+AGG | 0.531316 | 4_1:+77520131 | Msa0574140:CDS |
| GCGTTCTAAAGTTGCCTCAA+CGG | 0.532916 | 4_1:-77516621 | None:intergenic |
| GGTGCTGCAGGACCTCTGAC+AGG | 0.533479 | 4_1:-77518674 | None:intergenic |
| GCAGGAAGAGGAGGAAGTGT+CGG | 0.537059 | 4_1:-77515888 | None:intergenic |
| CTCTTCCTGCACCCAAAGTG+GGG | 0.540427 | 4_1:+77515901 | Msa0574140:CDS |
| GGAACTCTGGCCGTCCATCA+GGG | 0.541188 | 4_1:+77517707 | Msa0574140:CDS |
| GGATTAAGGTTCTCATCGTA+GGG | 0.550297 | 4_1:-77515417 | None:intergenic |
| GACCGAAGGCGTAGAAGTGA+TGG | 0.554429 | 4_1:-77521249 | None:intergenic |
| GCTAAAGTTCCAGGAGACAT+TGG | 0.554665 | 4_1:-77520264 | None:intergenic |
| CCTGTCCCAGTACCTCGTGT+TGG | 0.556568 | 4_1:+77518713 | Msa0574140:CDS |
| AAAATTGCGAGCAGTCCTCA+TGG | 0.561710 | 4_1:+77516665 | Msa0574140:CDS |
| TGGGGCGATCGAATGGGTGA+AGG | 0.561905 | 4_1:+77515735 | Msa0574140:exon |
| TAACAATGTTGACAATGAAG+CGG | 0.562048 | 4_1:+77516586 | Msa0574140:CDS |
| TATAAATGTAGGAGGAGACT+GGG | 0.563902 | 4_1:+77517400 | Msa0574140:intron |
| GATCCATCGTTTGGAAAGCT+AGG | 0.564234 | 4_1:+77517729 | Msa0574140:CDS |
| CCAACACGAGGTACTGGGAC+AGG | 0.566645 | 4_1:-77518713 | None:intergenic |
| CAAACCAAAAGGAAGCTGAT+GGG | 0.567376 | 4_1:+77520142 | Msa0574140:CDS |
| TCACAATTGCCTTATGGACA+AGG | 0.568831 | 4_1:+77520369 | Msa0574140:CDS |
| ATTCCGTTAAGAAGCTTGCT+AGG | 0.570445 | 4_1:+77515796 | Msa0574140:CDS |
| GTAGAAGTGATGGCGTTGCA+AGG | 0.574567 | 4_1:-77521239 | None:intergenic |
| CCAAACCAAAAGGAAGCTGA+TGG | 0.575383 | 4_1:+77520141 | Msa0574140:CDS |
| CAAAGCTCCTTCAGGTGCTG+TGG | 0.576488 | 4_1:-77518884 | None:intergenic |
| AGAGGAGGAAGTGTCGGCGG+TGG | 0.576611 | 4_1:-77515882 | None:intergenic |
| TTTAGTGCTAGTATCTGGAC+AGG | 0.580606 | 4_1:+77518913 | Msa0574140:CDS |
| TCCAAACGATGGATCCCTGA+TGG | 0.585261 | 4_1:-77517721 | None:intergenic |
| ACAAAGCAAAAGAAATGGAA+AGG | 0.586656 | 4_1:-77521670 | None:intergenic |
| TAGATAAGCACACAGAAGAT+CGG | 0.590669 | 4_1:+77520079 | Msa0574140:CDS |
| AGCCATCGACGCAGTTGAGG+GGG | 0.590783 | 4_1:-77520328 | None:intergenic |
| GTTGAAGTGACGGTGTTGCA+AGG | 0.590921 | 4_1:-77521272 | None:intergenic |
| GACAGGAGACAAAGATGAAG+AGG | 0.594341 | 4_1:-77518696 | None:intergenic |
| TTGAAGTGATAGTGTTGCAT+GGG | 0.594681 | 4_1:-77521205 | None:intergenic |
| AAGGTCCAACACGAGGTACT+GGG | 0.595130 | 4_1:-77518718 | None:intergenic |
| AACGATGGATCCCTGATGGA+CGG | 0.596545 | 4_1:-77517717 | None:intergenic |
| ACAAGACTGCAAGGGACCAA+AGG | 0.597556 | 4_1:-77521299 | None:intergenic |
| ACGGTGTTGCAAGGGACCGA+AGG | 0.599968 | 4_1:-77521263 | None:intergenic |
| GACCATAGGTGTTGAAGTGA+TGG | 0.600889 | 4_1:-77521117 | None:intergenic |
| GACCATAGGTGTTGAAGTGA+TGG | 0.600889 | 4_1:-77521150 | None:intergenic |
| ATGGTGCTGATGTTCCAAAA+GGG | 0.600938 | 4_1:+77520238 | Msa0574140:CDS |
| GAGCCATCGACGCAGTTGAG+GGG | 0.602668 | 4_1:-77520329 | None:intergenic |
| ATGGTGTTGCAAGGGACCAT+AGG | 0.603345 | 4_1:-77521131 | None:intergenic |
| ATGGTGTTGCAAGGGACCAT+AGG | 0.603345 | 4_1:-77521164 | None:intergenic |
| TGTCCTAGCTTTCCAAACGA+TGG | 0.604497 | 4_1:-77517732 | None:intergenic |
| AAACCAAAAGGAAGCTGATG+GGG | 0.605517 | 4_1:+77520143 | Msa0574140:CDS |
| TAGAAGTGATGGCGTTGCAA+GGG | 0.606725 | 4_1:-77521238 | None:intergenic |
| ATGGCGTTGCAAGGGACCAA+AGG | 0.607985 | 4_1:-77521230 | None:intergenic |
| AGTATTGGTAAAGCACAACA+AGG | 0.610516 | 4_1:+77517431 | Msa0574140:CDS |
| AACATTCACAGTACTTCTTG+AGG | 0.610779 | 4_1:-77517479 | None:intergenic |
| TCATGGAACACGTGATAACA+AGG | 0.615546 | 4_1:+77516682 | Msa0574140:CDS |
| TTTGCCGACGTTATTACAGG+TGG | 0.617033 | 4_1:-77521081 | None:intergenic |
| TCAAAAGCTCGTGAGAGAGA+GGG | 0.617804 | 4_1:+77515502 | Msa0574140:five_prime_UTR |
| TTGAAGTGACGGTGTTGCAA+GGG | 0.618089 | 4_1:-77521271 | None:intergenic |
| GTATTGGTAAAGCACAACAA+GGG | 0.619872 | 4_1:+77517432 | Msa0574140:CDS |
| ACTTTGGGTGCAGGAAGAGG+AGG | 0.619897 | 4_1:-77515897 | None:intergenic |
| AAATGGGGAAATTAAGCCGA+AGG | 0.620465 | 4_1:+77521328 | Msa0574140:CDS |
| GACCAAAGGTGTTGAAGTGA+TGG | 0.620830 | 4_1:-77521183 | None:intergenic |
| GATCTATGCAGAGCAAGAGA+GGG | 0.621556 | 4_1:+77520401 | Msa0574140:CDS |
| AAAGCTCGTGAGAGAGAGGG+AGG | 0.625447 | 4_1:+77515505 | Msa0574140:five_prime_UTR |
| GTTGAAGTGATGGTGTTGCA+AGG | 0.625625 | 4_1:-77521140 | None:intergenic |
| GTTGAAGTGATGGTGTTGCA+AGG | 0.625625 | 4_1:-77521173 | None:intergenic |
| GCGTCGGGGATATATTGCGA+TGG | 0.627790 | 4_1:+77516542 | Msa0574140:CDS |
| AGTCTAACTTAGATGAGCAG+AGG | 0.629549 | 4_1:+77521372 | Msa0574140:three_prime_UTR |
| TTGAAGTGATGGTGTTGCAA+GGG | 0.633210 | 4_1:-77521139 | None:intergenic |
| TTGAAGTGATGGTGTTGCAA+GGG | 0.633210 | 4_1:-77521172 | None:intergenic |
| ACTGAGGCAGCGCAACAGCA+AGG | 0.636738 | 4_1:+77521050 | Msa0574140:CDS |
| GGCAAGACGAGAAGCCGTTG+AGG | 0.638829 | 4_1:+77516607 | Msa0574140:CDS |
| CAAAGGTGTTGTTGAAGTGA+CGG | 0.642763 | 4_1:-77521282 | None:intergenic |
| CATACAACCACAGCACCTGA+AGG | 0.646661 | 4_1:+77518877 | Msa0574140:CDS |
| ACAGGAGACAAAGATGAAGA+GGG | 0.650680 | 4_1:-77518695 | None:intergenic |
| GGAAGAGGAGGAAGTGTCGG+CGG | 0.650685 | 4_1:-77515885 | None:intergenic |
| TATCAGGCAAATCCTGTCAG+AGG | 0.651141 | 4_1:+77518662 | Msa0574140:intron |
| ATAGTGTTGCATGGGACCAA+AGG | 0.652692 | 4_1:-77521197 | None:intergenic |
| TATTGGTAAAGCACAACAAG+GGG | 0.652902 | 4_1:+77517433 | Msa0574140:CDS |
| GTGCTGATGTTCCAAAAGGG+AGG | 0.653307 | 4_1:+77520241 | Msa0574140:CDS |
| GTTGAAGTGATAGTGTTGCA+TGG | 0.654500 | 4_1:-77521206 | None:intergenic |
| TAAGCACACAGAAGATCGGA+CGG | 0.662361 | 4_1:+77520083 | Msa0574140:CDS |
| AGCTGATGGGGAGAAAGTTG+TGG | 0.668913 | 4_1:+77520155 | Msa0574140:CDS |
| TTGTTATCACGTGTTCCATG+AGG | 0.679705 | 4_1:-77516680 | None:intergenic |
| TTTCTGAAACAAGACTGCAA+GGG | 0.692177 | 4_1:-77521307 | None:intergenic |
| GGATCCACCTGTAATAACGT+CGG | 0.698709 | 4_1:+77521077 | Msa0574140:CDS |
| CACTGAAAATACCAGTACTG+AGG | 0.699145 | 4_1:+77521034 | Msa0574140:CDS |
| AATGTTGAAGGTCCAACACG+AGG | 0.707406 | 4_1:-77518725 | None:intergenic |
| TGGTGGTGATGAATAACCAG+AGG | 0.718034 | 4_1:-77517661 | None:intergenic |
| ATAAATGTAGGAGGAGACTG+GGG | 0.722595 | 4_1:+77517401 | Msa0574140:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTGTAAATTTTCTA+CGG | - | chr4_1:77515477-77515496 | None:intergenic | 10.0% |
| !! | AACAAAAAATTAATATATGT+GGG | - | chr4_1:77516989-77517008 | None:intergenic | 10.0% |
| !!! | AATGAATATTTTTTGAAAAT+TGG | - | chr4_1:77520622-77520641 | None:intergenic | 10.0% |
| !!! | TCAAATAAAGTTGATTTATT+TGG | + | chr4_1:77516859-77516878 | Msa0574140:intron | 15.0% |
| !! | ACAAAAAATTAATATATGTG+GGG | - | chr4_1:77516988-77517007 | None:intergenic | 15.0% |
| !! | GAACAAAAAATTAATATATG+TGG | - | chr4_1:77516990-77517009 | None:intergenic | 15.0% |
| !! | AAAAGGAAAAAATGTAAATA+AGG | - | chr4_1:77517063-77517082 | None:intergenic | 15.0% |
| !!! | ATTACTTCATTTTAAATTGT+GGG | - | chr4_1:77517130-77517149 | None:intergenic | 15.0% |
| !!! | AATTACTTCATTTTAAATTG+TGG | - | chr4_1:77517131-77517150 | None:intergenic | 15.0% |
| !! | TAAGTAAAAAAAATTAAAGC+CGG | + | chr4_1:77517282-77517301 | Msa0574140:intron | 15.0% |
| !!! | TTTTTATTCTTATGTTTCTA+TGG | + | chr4_1:77517370-77517389 | Msa0574140:intron | 15.0% |
| !!! | TATTTTTTTTTACTCCTAAT+GGG | - | chr4_1:77517881-77517900 | None:intergenic | 15.0% |
| !!! | ATATTTTTTTTTACTCCTAA+TGG | - | chr4_1:77517882-77517901 | None:intergenic | 15.0% |
| !!! | TGTTTTATATGAAGAAAATA+TGG | - | chr4_1:77518401-77518420 | None:intergenic | 15.0% |
| !! | TCTTATTATAATTGAATGAA+TGG | + | chr4_1:77518435-77518454 | Msa0574140:intron | 15.0% |
| !!! | TCAAAATCAAAATATGTTTT+AGG | - | chr4_1:77519564-77519583 | None:intergenic | 15.0% |
| !! | ATTAAATATGAGTTTGATAT+TGG | - | chr4_1:77520036-77520055 | None:intergenic | 15.0% |
| !! | ACAAAATTGATAAAAGAAAA+TGG | - | chr4_1:77521524-77521543 | None:intergenic | 15.0% |
| !! | ATTACAATTATGTAATTTAC+AGG | - | chr4_1:77521594-77521613 | None:intergenic | 15.0% |
| !! | AACAATAATCACAACAATTA+GGG | - | chr4_1:77515659-77515678 | None:intergenic | 20.0% |
| !! | TAACAATAATCACAACAATT+AGG | - | chr4_1:77515660-77515679 | None:intergenic | 20.0% |
| !!! | TTTTTTGTGTGTTGAATTTT+TGG | + | chr4_1:77515715-77515734 | Msa0574140:five_prime_UTR | 20.0% |
| !!! | TTTTTGTGTGTTGAATTTTT+GGG | + | chr4_1:77515716-77515735 | Msa0574140:five_prime_UTR | 20.0% |
| !! | AAATTGAGATTCTTGTTAAT+AGG | + | chr4_1:77516165-77516184 | Msa0574140:intron | 20.0% |
| !! | AATTGAGATTCTTGTTAATA+GGG | + | chr4_1:77516166-77516185 | Msa0574140:intron | 20.0% |
| !! | AATTAAGCACTTCAAAAAAA+AGG | - | chr4_1:77516280-77516299 | None:intergenic | 20.0% |
| !! | AATTAGTGTTTATTTGATTC+AGG | + | chr4_1:77516296-77516315 | Msa0574140:intron | 20.0% |
| !!! | GATTTGCTTATATTTTGTTA+CGG | - | chr4_1:77516835-77516854 | None:intergenic | 20.0% |
| !! | AAAATGCATCAAACAAAATT+TGG | - | chr4_1:77516886-77516905 | None:intergenic | 20.0% |
| !! | AAAAAATTAATATATGTGGG+GGG | - | chr4_1:77516986-77517005 | None:intergenic | 20.0% |
| !! | CAAAAAATTAATATATGTGG+GGG | - | chr4_1:77516987-77517006 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTACTCCTAATG+GGG | - | chr4_1:77517880-77517899 | None:intergenic | 20.0% |
| !! | TGGTATTAAAATACAATTTC+CGG | - | chr4_1:77518488-77518507 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTCATGCTTATC+AGG | + | chr4_1:77518646-77518665 | Msa0574140:intron | 20.0% |
| !!! | AAAATTTCTTGAGATTTGTT+TGG | - | chr4_1:77519119-77519138 | None:intergenic | 20.0% |
| !!! | AACATATTTTGATTTTGAAG+TGG | + | chr4_1:77519566-77519585 | Msa0574140:intron | 20.0% |
| !! | TTTAATGTAATTACAAGTGT+CGG | - | chr4_1:77519681-77519700 | None:intergenic | 20.0% |
| !!! | TGTATTCTTTTGAAGTTTTT+GGG | + | chr4_1:77519961-77519980 | Msa0574140:intron | 20.0% |
| !! | CAATTGAATAGAATAATAGA+AGG | - | chr4_1:77519993-77520012 | None:intergenic | 20.0% |
| !! | CTTCTATTATTCTATTCAAT+TGG | + | chr4_1:77519991-77520010 | Msa0574140:intron | 20.0% |
| !!! | GCTTATCTATTAAATTTTTC+TGG | - | chr4_1:77520068-77520087 | None:intergenic | 20.0% |
| !!! | AATTCAGAGATTTTCTTAAT+AGG | + | chr4_1:77520436-77520455 | Msa0574140:CDS | 20.0% |
| !!! | ATTCAGAGATTTTCTTAATA+GGG | + | chr4_1:77520437-77520456 | Msa0574140:CDS | 20.0% |
| !! | TGAAATTAGGAAAAGAAATT+AGG | - | chr4_1:77520949-77520968 | None:intergenic | 20.0% |
| !! | TGTGCATTATTAATATAGAA+AGG | + | chr4_1:77521690-77521709 | Msa0574140:three_prime_UTR | 20.0% |
| !! | TTTTGTAAATTTTCTACGGT+TGG | - | chr4_1:77515473-77515492 | None:intergenic | 25.0% |
| !! | TTTTGTGTGTTGAATTTTTG+GGG | + | chr4_1:77515717-77515736 | Msa0574140:five_prime_UTR | 25.0% |
| ! | AAAAGCGAAGTATAAGTTAT+TGG | + | chr4_1:77516190-77516209 | Msa0574140:intron | 25.0% |
| !!! | TATTGGTTCAAATTTGATGA+TGG | + | chr4_1:77516207-77516226 | Msa0574140:intron | 25.0% |
| !! | TGCTTATATTTTGTTACAGA+AGG | + | chr4_1:77516906-77516925 | Msa0574140:intron | 25.0% |
| !!! | TACTTTGTTTTAGTTCATTG+AGG | + | chr4_1:77516940-77516959 | Msa0574140:intron | 25.0% |
| !! | ATTGAGGATTTTTGTTGATA+AGG | + | chr4_1:77516956-77516975 | Msa0574140:intron | 25.0% |
| !!! | TTGAGGATTTTTGTTGATAA+GGG | + | chr4_1:77516957-77516976 | Msa0574140:intron | 25.0% |
| !! | TTTTTCCTTTTATTAGAAGC+AGG | + | chr4_1:77517072-77517091 | Msa0574140:intron | 25.0% |
| ! | TTTACAAGTATCTTAACAAC+AGG | - | chr4_1:77517248-77517267 | None:intergenic | 25.0% |
| ! | ATGGACTTCAATATAAATGT+AGG | + | chr4_1:77517389-77517408 | Msa0574140:intron | 25.0% |
| !! | GTAAAACTTGATAATACTGT+AGG | + | chr4_1:77517759-77517778 | Msa0574140:intron | 25.0% |
| !!! | ATTTTGGAAATTAGCTAAAC+TGG | + | chr4_1:77517796-77517815 | Msa0574140:intron | 25.0% |
| !!! | TTTTGGAAATTAGCTAAACT+GGG | + | chr4_1:77517797-77517816 | Msa0574140:intron | 25.0% |
| ! | ATGCATCTCTCAATTTAATT+GGG | - | chr4_1:77517906-77517925 | None:intergenic | 25.0% |
| ! | AATGCATCTCTCAATTTAAT+TGG | - | chr4_1:77517907-77517926 | None:intergenic | 25.0% |
| ! | AATTAGAATAGCATTTCCTT+GGG | + | chr4_1:77518226-77518245 | Msa0574140:intron | 25.0% |
| !! | ACGAGAAAAGACTAAATTTT+TGG | - | chr4_1:77518355-77518374 | None:intergenic | 25.0% |
| !!! | AAAAATTTAGTCTTTTCTCG+TGG | + | chr4_1:77518354-77518373 | Msa0574140:intron | 25.0% |
| !! | ACCTGTACATAAATTTTGAA+GGG | - | chr4_1:77518754-77518773 | None:intergenic | 25.0% |
| !! | TACCTGTACATAAATTTTGA+AGG | - | chr4_1:77518755-77518774 | None:intergenic | 25.0% |
| ! | TTCAAAATTTATGTACAGGT+AGG | + | chr4_1:77518754-77518773 | Msa0574140:intron | 25.0% |
| !! | CAAATAACACAATTGATGAT+GGG | - | chr4_1:77518978-77518997 | None:intergenic | 25.0% |
| ! | TAGTAGCTTAATTTAATGAG+CGG | + | chr4_1:77519138-77519157 | Msa0574140:intron | 25.0% |
| ! | AAAAGGTTGTATTTACCATT+TGG | - | chr4_1:77519469-77519488 | None:intergenic | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | + | chr4_1:77519712-77519731 | Msa0574140:intron | 25.0% |
| !!! | GTGTATTCTTTTGAAGTTTT+TGG | + | chr4_1:77519960-77519979 | Msa0574140:intron | 25.0% |
| !! | GGTTCTATGAAATTTTTGTA+AGG | - | chr4_1:77520525-77520544 | None:intergenic | 25.0% |
| !! | ATTCATTTTGCATCAAAGAT+AGG | + | chr4_1:77520635-77520654 | Msa0574140:intron | 25.0% |
| !! | TTCATTTTGCATCAAAGATA+GGG | + | chr4_1:77520636-77520655 | Msa0574140:intron | 25.0% |
| ! | AATAAATACACTACAGAAGT+TGG | - | chr4_1:77520836-77520855 | None:intergenic | 25.0% |
| !! | TAAAGTGTTACAAATAAAGC+AGG | - | chr4_1:77520921-77520940 | None:intergenic | 25.0% |
| ! | AAAAGAAAATGGATCTTAGT+TGG | - | chr4_1:77521513-77521532 | None:intergenic | 25.0% |
| ! | GAAAAACTTATAATTCTCTC+AGG | - | chr4_1:77521731-77521750 | None:intergenic | 25.0% |
| !!! | TCGTTTTAAGTTTGATCATG+CGG | - | chr4_1:77515447-77515466 | None:intergenic | 30.0% |
| !!! | AATTTGATGATGGCCTTTTT+TGG | + | chr4_1:77516217-77516236 | Msa0574140:intron | 30.0% |
| AGAAGAAAAGTCTCCAAAAA+AGG | - | chr4_1:77516233-77516252 | None:intergenic | 30.0% | |
| ! | ATATTGTGAATGTTTTGCGT+CGG | + | chr4_1:77516526-77516545 | Msa0574140:CDS | 30.0% |
| TAACAATGTTGACAATGAAG+CGG | + | chr4_1:77516586-77516605 | Msa0574140:CDS | 30.0% | |
| !!! | GTTGTGAATTTTTTGTGTTG+AGG | + | chr4_1:77516747-77516766 | Msa0574140:intron | 30.0% |
| ! | TGCTTATATTTTGTTACGGA+GGG | - | chr4_1:77516831-77516850 | None:intergenic | 30.0% |
| ! | TTGCTTATATTTTGTTACGG+AGG | - | chr4_1:77516832-77516851 | None:intergenic | 30.0% |
| AAACGAAAACTAAAATGCAC+TGG | - | chr4_1:77517040-77517059 | None:intergenic | 30.0% | |
| ATGTCATAATTCCATACCAT+TGG | - | chr4_1:77517217-77517236 | None:intergenic | 30.0% | |
| !! | TTTTGAGTAAGCAAAAAGGA+AGG | - | chr4_1:77517334-77517353 | None:intergenic | 30.0% |
| !! | GATGTTTTGAGTAAGCAAAA+AGG | - | chr4_1:77517338-77517357 | None:intergenic | 30.0% |
| GACTTCAATATAAATGTAGG+AGG | + | chr4_1:77517392-77517411 | Msa0574140:intron | 30.0% | |
| !! | GGTGTCATTGTAAAAAATCT+GGG | + | chr4_1:77517454-77517473 | Msa0574140:CDS | 30.0% |
| ! | GTTTTCAGAACAAAGAATGT+TGG | - | chr4_1:77517511-77517530 | None:intergenic | 30.0% |
| ! | TTCTGAAAACTGTAAATGCA+TGG | + | chr4_1:77517521-77517540 | Msa0574140:CDS | 30.0% |
| ! | ATGGATTGCAAAAACTTTGA+AGG | + | chr4_1:77517540-77517559 | Msa0574140:CDS | 30.0% |
| !!! | TATTGTTGTTTTGATCTCCA+TGG | - | chr4_1:77517590-77517609 | None:intergenic | 30.0% |
| TGGAGATCAAAACAACAATA+TGG | + | chr4_1:77517590-77517609 | Msa0574140:CDS | 30.0% | |
| TTTGGAAATTAGCTAAACTG+GGG | + | chr4_1:77517798-77517817 | Msa0574140:intron | 30.0% | |
| !! | TTGAGTTGAAATGAACACAT+TGG | - | chr4_1:77517983-77518002 | None:intergenic | 30.0% |
| CAATTAGAATAGCATTTCCT+TGG | + | chr4_1:77518225-77518244 | Msa0574140:intron | 30.0% | |
| !!! | GAACTAGCAATTTAGCTTTT+GGG | - | chr4_1:77518544-77518563 | None:intergenic | 30.0% |
| !!! | TGAACTAGCAATTTAGCTTT+TGG | - | chr4_1:77518545-77518564 | None:intergenic | 30.0% |
| AATTTATGTACAGGTAGGAT+TGG | + | chr4_1:77518759-77518778 | Msa0574140:intron | 30.0% | |
| ! | ATTAACTTGATTGCTGTTGA+AGG | + | chr4_1:77518837-77518856 | Msa0574140:intron | 30.0% |
| !! | TATACCTGTAAGTGTTTTTG+TGG | - | chr4_1:77518939-77518958 | None:intergenic | 30.0% |
| CAAAAACACTTACAGGTATA+TGG | + | chr4_1:77518939-77518958 | Msa0574140:intron | 30.0% | |
| GCAAATAACACAATTGATGA+TGG | - | chr4_1:77518979-77518998 | None:intergenic | 30.0% | |
| !! | ATACAGTTTTGTGTTTTCGT+TGG | + | chr4_1:77519012-77519031 | Msa0574140:intron | 30.0% |
| ! | TGAGTGTACTGATATTGATT+TGG | + | chr4_1:77519047-77519066 | Msa0574140:intron | 30.0% |
| !! | GTACTGATATTGATTTGGAA+AGG | + | chr4_1:77519052-77519071 | Msa0574140:intron | 30.0% |
| ! | TCTTGAGATTTGTTTGGAAA+GGG | - | chr4_1:77519113-77519132 | None:intergenic | 30.0% |
| ! | TTCTTGAGATTTGTTTGGAA+AGG | - | chr4_1:77519114-77519133 | None:intergenic | 30.0% |
| AGTAGCTTAATTTAATGAGC+GGG | + | chr4_1:77519139-77519158 | Msa0574140:intron | 30.0% | |
| AATAATTCTGAACCTTACTG+TGG | - | chr4_1:77519329-77519348 | None:intergenic | 30.0% | |
| TAATTCTATGCTATGAAGCA+CGG | + | chr4_1:77519592-77519611 | Msa0574140:intron | 30.0% | |
| ! | TAGGTTTACCAAACATTTTG+AGG | - | chr4_1:77519803-77519822 | None:intergenic | 30.0% |
| ! | GTCTGGTGAATTTGAAATTT+AGG | + | chr4_1:77519857-77519876 | Msa0574140:intron | 30.0% |
| ! | GGTGAATTTGAAATTTAGGA+TGG | + | chr4_1:77519861-77519880 | Msa0574140:intron | 30.0% |
| ! | GTTAAACATTGAGGTATCTT+AGG | - | chr4_1:77519891-77519910 | None:intergenic | 30.0% |
| ATTCAGACAGTTAAACATTG+AGG | - | chr4_1:77519900-77519919 | None:intergenic | 30.0% | |
| TCTTAATAGGGTTATCACTA+TGG | + | chr4_1:77520449-77520468 | Msa0574140:intron | 30.0% | |
| CTTAATAGGGTTATCACTAT+GGG | + | chr4_1:77520450-77520469 | Msa0574140:intron | 30.0% | |
| AATTTAGAGAACTGTGATAC+TGG | + | chr4_1:77520593-77520612 | Msa0574140:intron | 30.0% | |
| !! | ATGGTTCTGAACTTTGATAA+AGG | + | chr4_1:77520660-77520679 | Msa0574140:intron | 30.0% |
| ! | TTTCAGTGCAATTGATGATT+GGG | - | chr4_1:77521022-77521041 | None:intergenic | 30.0% |
| !! | TTTTCAGTGCAATTGATGAT+TGG | - | chr4_1:77521023-77521042 | None:intergenic | 30.0% |
| TATATCTATTGTTCGACCTT+CGG | - | chr4_1:77521347-77521366 | None:intergenic | 30.0% | |
| !!! | CTTCTAGTTTTACTTCCAAA+CGG | - | chr4_1:77521400-77521419 | None:intergenic | 30.0% |
| ! | CATTGTCATTCTTCATTTTC+TGG | + | chr4_1:77521453-77521472 | Msa0574140:three_prime_UTR | 30.0% |
| AAAAGAAATGGAAAGGAAGA+AGG | - | chr4_1:77521666-77521685 | None:intergenic | 30.0% | |
| ACAAAGCAAAAGAAATGGAA+AGG | - | chr4_1:77521673-77521692 | None:intergenic | 30.0% | |
| AATGCACAAAGCAAAAGAAA+TGG | - | chr4_1:77521678-77521697 | None:intergenic | 30.0% | |
| TTGAGTTCAGATCCCAAAAA+CGG | - | chr4_1:77515598-77515617 | None:intergenic | 35.0% | |
| !!! | GAATCCAATTGTGCGTTTTT+TGG | - | chr4_1:77515780-77515799 | None:intergenic | 35.0% |
| TTGTTGTATCATCAACTCTG+TGG | + | chr4_1:77516080-77516099 | Msa0574140:intron | 35.0% | |
| AACTCTGTGGTTGAGAAATT+AGG | + | chr4_1:77516093-77516112 | Msa0574140:intron | 35.0% | |
| ! | GACTTTGATTTAGGAGATTC+TGG | - | chr4_1:77516325-77516344 | None:intergenic | 35.0% |
| ! | TTGGGTCTTGACTTTGATTT+AGG | - | chr4_1:77516334-77516353 | None:intergenic | 35.0% |
| ! | GCATCTTTTGTCTCAAAGTT+GGG | - | chr4_1:77516352-77516371 | None:intergenic | 35.0% |
| ! | AGCATCTTTTGTCTCAAAGT+TGG | - | chr4_1:77516353-77516372 | None:intergenic | 35.0% |
| !!! | TTGCACTGTTTTTGCTTCTT+TGG | - | chr4_1:77516379-77516398 | None:intergenic | 35.0% |
| ! | TATTGTGAATGTTTTGCGTC+GGG | + | chr4_1:77516527-77516546 | Msa0574140:CDS | 35.0% |
| ! | GCAGGCTTAACTTTTTGTAA+CGG | + | chr4_1:77516708-77516727 | Msa0574140:intron | 35.0% |
| ! | GCTTAACTTTTTGTAACGGT+TGG | + | chr4_1:77516712-77516731 | Msa0574140:intron | 35.0% |
| ! | TTCCTTTTATTAGAAGCAGG+AGG | + | chr4_1:77517075-77517094 | Msa0574140:intron | 35.0% |
| ATCCTCCTGCTTCTAATAAA+AGG | - | chr4_1:77517080-77517099 | None:intergenic | 35.0% | |
| ! | TTTTCAACCACATCCCTATA+AGG | + | chr4_1:77517165-77517184 | Msa0574140:intron | 35.0% |
| TTTCAACCACATCCCTATAA+GGG | + | chr4_1:77517166-77517185 | Msa0574140:intron | 35.0% | |
| GATGCAAATCAACCCTTATA+GGG | - | chr4_1:77517181-77517200 | None:intergenic | 35.0% | |
| TGATGCAAATCAACCCTTAT+AGG | - | chr4_1:77517182-77517201 | None:intergenic | 35.0% | |
| !! | GTTGATTTGCATCAGAAGTT+GGG | + | chr4_1:77517188-77517207 | Msa0574140:intron | 35.0% |
| TCATAATTCCATACCATTGG+AGG | - | chr4_1:77517214-77517233 | None:intergenic | 35.0% | |
| GTATGGAATTATGACATGAC+AGG | + | chr4_1:77517220-77517239 | Msa0574140:intron | 35.0% | |
| ! | TTTTCCAACACAAGAAATGC+CGG | - | chr4_1:77517304-77517323 | None:intergenic | 35.0% |
| ATATAAATGTAGGAGGAGAC+TGG | + | chr4_1:77517399-77517418 | Msa0574140:intron | 35.0% | |
| TATAAATGTAGGAGGAGACT+GGG | + | chr4_1:77517400-77517419 | Msa0574140:intron | 35.0% | |
| !! | AGTATTGGTAAAGCACAACA+AGG | + | chr4_1:77517431-77517450 | Msa0574140:CDS | 35.0% |
| ! | GTATTGGTAAAGCACAACAA+GGG | + | chr4_1:77517432-77517451 | Msa0574140:CDS | 35.0% |
| TATTGGTAAAGCACAACAAG+GGG | + | chr4_1:77517433-77517452 | Msa0574140:CDS | 35.0% | |
| !! | GGGTGTCATTGTAAAAAATC+TGG | + | chr4_1:77517453-77517472 | Msa0574140:CDS | 35.0% |
| AACATTCACAGTACTTCTTG+AGG | - | chr4_1:77517482-77517501 | None:intergenic | 35.0% | |
| AGCGAGAAAAAGAAAAGGTT+CGG | + | chr4_1:77517686-77517705 | Msa0574140:CDS | 35.0% | |
| ATAATACTGTAGGCAGTTCA+GGG | + | chr4_1:77517769-77517788 | Msa0574140:intron | 35.0% | |
| AATTAGCTAAACTGGGGAAA+TGG | + | chr4_1:77517804-77517823 | Msa0574140:intron | 35.0% | |
| TCATGTAACATTTCCCCATT+AGG | + | chr4_1:77517864-77517883 | Msa0574140:intron | 35.0% | |
| GATATATGCTTCCCTTGATT+TGG | + | chr4_1:77517956-77517975 | Msa0574140:intron | 35.0% | |
| AACACATTGGACCAAATCAA+GGG | - | chr4_1:77517970-77517989 | None:intergenic | 35.0% | |
| GTCTCAAAACACTATCCTAT+TGG | + | chr4_1:77518024-77518043 | Msa0574140:intron | 35.0% | |
| CACTATCCTATTGGAAAGAA+AGG | + | chr4_1:77518033-77518052 | Msa0574140:intron | 35.0% | |
| ATGAAGCCTTTCTTTCCAAT+AGG | - | chr4_1:77518042-77518061 | None:intergenic | 35.0% | |
| ! | TTTTCATTGAGAACCAGTAG+GGG | - | chr4_1:77518289-77518308 | None:intergenic | 35.0% |
| ! | GTTTTCATTGAGAACCAGTA+GGG | - | chr4_1:77518290-77518309 | None:intergenic | 35.0% |
| AAATCAAGTATGTGACTGTG+AGG | + | chr4_1:77518462-77518481 | Msa0574140:intron | 35.0% | |
| GCCCTTCAAAATTTATGTAC+AGG | + | chr4_1:77518750-77518769 | Msa0574140:CDS | 35.0% | |
| !!! | TCTGTTTTAGTGCTAGTATC+TGG | + | chr4_1:77518908-77518927 | Msa0574140:CDS | 35.0% |
| TTGTTTGGAAAGGGAAAAAG+CGG | - | chr4_1:77519104-77519123 | None:intergenic | 35.0% | |
| ACAAAATTTCAGCCACAGTA+AGG | + | chr4_1:77519314-77519333 | Msa0574140:intron | 35.0% | |
| GAATTATTCACCAAGCTCAA+TGG | + | chr4_1:77519341-77519360 | Msa0574140:intron | 35.0% | |
| ATTTGTCAATCCATTGAGCT+TGG | - | chr4_1:77519354-77519373 | None:intergenic | 35.0% | |
| !! | AAGCTCAATGGATTGACAAA+TGG | + | chr4_1:77519353-77519372 | Msa0574140:intron | 35.0% |
| !! | TGAGAGTTTGATTTGCCAAA+TGG | + | chr4_1:77519451-77519470 | Msa0574140:intron | 35.0% |
| CTTGTCATTAGATAACTGTC+TGG | + | chr4_1:77519840-77519859 | Msa0574140:intron | 35.0% | |
| TAGATAAGCACACAGAAGAT+CGG | + | chr4_1:77520079-77520098 | Msa0574140:CDS | 35.0% | |
| ! | TGGTAATTGCTCTTGATTTG+AGG | - | chr4_1:77520124-77520143 | None:intergenic | 35.0% |
| AGAGCAATTACCAAACCAAA+AGG | + | chr4_1:77520131-77520150 | Msa0574140:CDS | 35.0% | |
| ACATCTTCACAATTGCCTTA+TGG | + | chr4_1:77520363-77520382 | Msa0574140:CDS | 35.0% | |
| ATCACTATGGGCGAAATAAA+TGG | + | chr4_1:77520462-77520481 | Msa0574140:intron | 35.0% | |
| TTTGCATCAAAGATAGGGAA+TGG | + | chr4_1:77520641-77520660 | Msa0574140:intron | 35.0% | |
| TTGACATAGCAATAGAAAGC+AGG | - | chr4_1:77520794-77520813 | None:intergenic | 35.0% | |
| !! | AACACTTCGTCTCTGAAATT+AGG | - | chr4_1:77520962-77520981 | None:intergenic | 35.0% |
| AAGTGAGTTAGAGACTCAAA+AGG | + | chr4_1:77520995-77521014 | Msa0574140:CDS | 35.0% | |
| ! | TTGAAGTGATAGTGTTGCAT+GGG | - | chr4_1:77521208-77521227 | None:intergenic | 35.0% |
| !! | TTTCTGAAACAAGACTGCAA+GGG | - | chr4_1:77521310-77521329 | None:intergenic | 35.0% |
| !!! | TTTTCTGAAACAAGACTGCA+AGG | - | chr4_1:77521311-77521330 | None:intergenic | 35.0% |
| !! | TGCAGTCTTGTTTCAGAAAA+TGG | + | chr4_1:77521311-77521330 | Msa0574140:CDS | 35.0% |
| !! | GCAGTCTTGTTTCAGAAAAT+GGG | + | chr4_1:77521312-77521331 | Msa0574140:CDS | 35.0% |
| !! | CAGTCTTGTTTCAGAAAATG+GGG | + | chr4_1:77521313-77521332 | Msa0574140:CDS | 35.0% |
| GGTCGAACAATAGATATAGA+AGG | + | chr4_1:77521349-77521368 | Msa0574140:exon | 35.0% | |
| TGTATGTGTGTTCTCTGTAA+TGG | + | chr4_1:77521425-77521444 | Msa0574140:three_prime_UTR | 35.0% | |
| ! | TTTCTGTAGGCTTTAACTGT+AGG | - | chr4_1:77521483-77521502 | None:intergenic | 35.0% |
| AAAATGGATCTTAGTTGGAC+TGG | - | chr4_1:77521508-77521527 | None:intergenic | 35.0% | |
| TAACCTAATTCCCCTTTCTA+GGG | + | chr4_1:77521632-77521651 | Msa0574140:three_prime_UTR | 35.0% | |
| TGGAAAGGAAGAAGGAAAAA+AGG | - | chr4_1:77521658-77521677 | None:intergenic | 35.0% | |
| GGATTAAGGTTCTCATCGTA+GGG | - | chr4_1:77515420-77515439 | None:intergenic | 40.0% | |
| TGGATTAAGGTTCTCATCGT+AGG | - | chr4_1:77515421-77515440 | None:intergenic | 40.0% | |
| TAAGTTTGATCATGCGGTTG+TGG | - | chr4_1:77515441-77515460 | None:intergenic | 40.0% | |
| !!! | AATTTTTGGGGCGATCGAAT+GGG | + | chr4_1:77515729-77515748 | Msa0574140:exon | 40.0% |
| !!! | CCAATTGTGCGTTTTTTGGA+GGG | - | chr4_1:77515776-77515795 | None:intergenic | 40.0% |
| !!! | TCCAATTGTGCGTTTTTTGG+AGG | - | chr4_1:77515777-77515796 | None:intergenic | 40.0% |
| ! | ATTCCGTTAAGAAGCTTGCT+AGG | + | chr4_1:77515796-77515815 | Msa0574140:CDS | 40.0% |
| CAATTGCAGCCAATAAGTTC+CGG | - | chr4_1:77516468-77516487 | None:intergenic | 40.0% | |
| ! | ATTGTGAATGTTTTGCGTCG+GGG | + | chr4_1:77516528-77516547 | Msa0574140:CDS | 40.0% |
| AACGCAATCCAAATGCCTTT+AGG | + | chr4_1:77516639-77516658 | Msa0574140:CDS | 40.0% | |
| !!! | ATTTTCGGCCTAAAGGCATT+TGG | - | chr4_1:77516650-77516669 | None:intergenic | 40.0% |
| TTGTTATCACGTGTTCCATG+AGG | - | chr4_1:77516683-77516702 | None:intergenic | 40.0% | |
| TCATGGAACACGTGATAACA+AGG | + | chr4_1:77516682-77516701 | Msa0574140:CDS | 40.0% | |
| AATCAACCCTTATAGGGATG+TGG | - | chr4_1:77517175-77517194 | None:intergenic | 40.0% | |
| !! | GGTTGATTTGCATCAGAAGT+TGG | + | chr4_1:77517187-77517206 | Msa0574140:intron | 40.0% |
| ATAAATGTAGGAGGAGACTG+GGG | + | chr4_1:77517401-77517420 | Msa0574140:intron | 40.0% | |
| GACTGGGGAAGTTAAAGTAT+TGG | + | chr4_1:77517416-77517435 | Msa0574140:CDS | 40.0% | |
| ! | CAGAACAAAGAATGTTGGCT+TGG | - | chr4_1:77517506-77517525 | None:intergenic | 40.0% |
| CAATATGGTGTATCTTCAGC+AGG | + | chr4_1:77517605-77517624 | Msa0574140:intron | 40.0% | |
| ! | TTTCTTTTTCTCGCTACTGG+TGG | - | chr4_1:77517681-77517700 | None:intergenic | 40.0% |
| ! | CCTTTTCTTTTTCTCGCTAC+TGG | - | chr4_1:77517684-77517703 | None:intergenic | 40.0% |
| CCAGTAGCGAGAAAAAGAAA+AGG | + | chr4_1:77517681-77517700 | Msa0574140:CDS | 40.0% | |
| AAAGAAAAGGTTCGGAACTC+TGG | + | chr4_1:77517694-77517713 | Msa0574140:CDS | 40.0% | |
| GATAATACTGTAGGCAGTTC+AGG | + | chr4_1:77517768-77517787 | Msa0574140:intron | 40.0% | |
| TAATACTGTAGGCAGTTCAG+GGG | + | chr4_1:77517770-77517789 | Msa0574140:intron | 40.0% | |
| CTGCAAAATGCTGTCTCAAT+TGG | - | chr4_1:77517844-77517863 | None:intergenic | 40.0% | |
| GAACACATTGGACCAAATCA+AGG | - | chr4_1:77517971-77517990 | None:intergenic | 40.0% | |
| !!! | GATAGTGTTTTGAGACAGTC+TGG | - | chr4_1:77518020-77518039 | None:intergenic | 40.0% |
| CTTCCATCTTTGCTCAATGT+GGG | + | chr4_1:77518086-77518105 | Msa0574140:intron | 40.0% | |
| TATCCCACATTGAGCAAAGA+TGG | - | chr4_1:77518092-77518111 | None:intergenic | 40.0% | |
| ! | CCATCGCAAACTCAAACTTT+TGG | - | chr4_1:77518132-77518151 | None:intergenic | 40.0% |
| ! | CCAAAAGTTTGAGTTTGCGA+TGG | + | chr4_1:77518129-77518148 | Msa0574140:intron | 40.0% |
| GTGAATTCCACTATGAGTGT+CGG | - | chr4_1:77518169-77518188 | None:intergenic | 40.0% | |
| GGAATTCACTCTAATCCCTT+TGG | + | chr4_1:77518180-77518199 | Msa0574140:intron | 40.0% | |
| AACCTTAAACCTGCACCAAA+GGG | - | chr4_1:77518198-77518217 | None:intergenic | 40.0% | |
| AAACCTTAAACCTGCACCAA+AGG | - | chr4_1:77518199-77518218 | None:intergenic | 40.0% | |
| TCCTTGGGTTTCTCATTCTT+TGG | + | chr4_1:77518241-77518260 | Msa0574140:intron | 40.0% | |
| ACCAAAGAATGAGAAACCCA+AGG | - | chr4_1:77518245-77518264 | None:intergenic | 40.0% | |
| TTTCATTGAGAACCAGTAGG+GGG | - | chr4_1:77518288-77518307 | None:intergenic | 40.0% | |
| ! | CGTTTTCATTGAGAACCAGT+AGG | - | chr4_1:77518291-77518310 | None:intergenic | 40.0% |
| TACCACGATAAGTTCACTTC+TGG | + | chr4_1:77518503-77518522 | Msa0574140:intron | 40.0% | |
| ACAGGAGACAAAGATGAAGA+GGG | - | chr4_1:77518698-77518717 | None:intergenic | 40.0% | |
| TTTGAAGGGCCTAATGTTGA+AGG | - | chr4_1:77518740-77518759 | None:intergenic | 40.0% | |
| TTTAGTGCTAGTATCTGGAC+AGG | + | chr4_1:77518913-77518932 | Msa0574140:CDS | 40.0% | |
| TGTTTGGAAAGGGAAAAAGC+GGG | - | chr4_1:77519103-77519122 | None:intergenic | 40.0% | |
| CGTTTGACTACACGTAAACA+AGG | - | chr4_1:77519427-77519446 | None:intergenic | 40.0% | |
| GAATCTATGAAGCACGGATA+CGG | - | chr4_1:77519773-77519792 | None:intergenic | 40.0% | |
| TCCGTGCTTCATAGATTCTA+TGG | + | chr4_1:77519775-77519794 | Msa0574140:intron | 40.0% | |
| GCCATAGAATCTATGAAGCA+CGG | - | chr4_1:77519779-77519798 | None:intergenic | 40.0% | |
| CTATGGCACCTCAAAATGTT+TGG | + | chr4_1:77519792-77519811 | Msa0574140:intron | 40.0% | |
| CAAACCAAAAGGAAGCTGAT+GGG | + | chr4_1:77520142-77520161 | Msa0574140:CDS | 40.0% | |
| AAACCAAAAGGAAGCTGATG+GGG | + | chr4_1:77520143-77520162 | Msa0574140:CDS | 40.0% | |
| !!! | CAGGACTGGTTTTATCAGTT+TGG | - | chr4_1:77520203-77520222 | None:intergenic | 40.0% |
| !! | TGAACTGGAATTTTCAGGAC+TGG | - | chr4_1:77520217-77520236 | None:intergenic | 40.0% |
| ! | CCATCTGAACTGGAATTTTC+AGG | - | chr4_1:77520222-77520241 | None:intergenic | 40.0% |
| CCTGAAAATTCCAGTTCAGA+TGG | + | chr4_1:77520219-77520238 | Msa0574140:intron | 40.0% | |
| !! | ATGGTGCTGATGTTCCAAAA+GGG | + | chr4_1:77520238-77520257 | Msa0574140:CDS | 40.0% |
| CACATCAATGCTAAAGTTCC+AGG | - | chr4_1:77520276-77520295 | None:intergenic | 40.0% | |
| TCACAATTGCCTTATGGACA+AGG | + | chr4_1:77520369-77520388 | Msa0574140:CDS | 40.0% | |
| AGTCCAAATGCTATGAACGA+GGG | - | chr4_1:77520547-77520566 | None:intergenic | 40.0% | |
| AAGTCCAAATGCTATGAACG+AGG | - | chr4_1:77520548-77520567 | None:intergenic | 40.0% | |
| GTGAATTAGAGCAGATCTCA+TGG | + | chr4_1:77520703-77520722 | Msa0574140:intron | 40.0% | |
| TTGAGTCTCTAACTCACTTC+TGG | - | chr4_1:77520994-77521013 | None:intergenic | 40.0% | |
| CACTGAAAATACCAGTACTG+AGG | + | chr4_1:77521034-77521053 | Msa0574140:CDS | 40.0% | |
| AATAACGTCGGCAAAGCAAT+TGG | + | chr4_1:77521089-77521108 | Msa0574140:CDS | 40.0% | |
| !! | TTGAAGTGATGGTGTTGCAA+GGG | - | chr4_1:77521142-77521161 | None:intergenic | 40.0% |
| !! | TTGAAGTGATGGTGTTGCAA+GGG | - | chr4_1:77521142-77521161 | None:intergenic | 40.0% |
| ! | GTTGAAGTGATAGTGTTGCA+TGG | - | chr4_1:77521209-77521228 | None:intergenic | 40.0% |
| CACTATCACTTCAACACCTT+TGG | + | chr4_1:77521214-77521233 | Msa0574140:CDS | 40.0% | |
| !! | CAAAGGTGTTGTTGAAGTGA+CGG | - | chr4_1:77521285-77521304 | None:intergenic | 40.0% |
| AAATGGGGAAATTAAGCCGA+AGG | + | chr4_1:77521328-77521347 | Msa0574140:CDS | 40.0% | |
| AGTCTAACTTAGATGAGCAG+AGG | + | chr4_1:77521372-77521391 | Msa0574140:three_prime_UTR | 40.0% | |
| !!! | AGTTGGACTGGTTTTTCTGT+AGG | - | chr4_1:77521496-77521515 | None:intergenic | 40.0% |
| GTAACCTAATTCCCCTTTCT+AGG | + | chr4_1:77521631-77521650 | Msa0574140:three_prime_UTR | 40.0% | |
| AGGAAAAAAGGCCCTAGAAA+GGG | - | chr4_1:77521646-77521665 | None:intergenic | 40.0% | |
| AAGGAAAAAAGGCCCTAGAA+AGG | - | chr4_1:77521647-77521666 | None:intergenic | 40.0% | |
| ! | GATCATGCGGTTGTGGATTA+AGG | - | chr4_1:77515434-77515453 | None:intergenic | 45.0% |
| TTCAAAAGCTCGTGAGAGAG+AGG | + | chr4_1:77515501-77515520 | Msa0574140:five_prime_UTR | 45.0% | |
| TCAAAAGCTCGTGAGAGAGA+GGG | + | chr4_1:77515502-77515521 | Msa0574140:five_prime_UTR | 45.0% | |
| !!! | GAATTTTTGGGGCGATCGAA+TGG | + | chr4_1:77515728-77515747 | Msa0574140:exon | 45.0% |
| CCCTCCAAAAAACGCACAAT+TGG | + | chr4_1:77515773-77515792 | Msa0574140:CDS | 45.0% | |
| CTGCCTAGCAAGCTTCTTAA+CGG | - | chr4_1:77515802-77515821 | None:intergenic | 45.0% | |
| ! | CAGCTCGATTTCAACGCTTT+TGG | + | chr4_1:77515819-77515838 | Msa0574140:CDS | 45.0% |
| ! | CTCGATTTCAACGCTTTTGG+TGG | + | chr4_1:77515822-77515841 | Msa0574140:CDS | 45.0% |
| ! | CGGAACTTATTGGCTGCAAT+TGG | + | chr4_1:77516466-77516485 | Msa0574140:intron | 45.0% |
| !! | GCGTTCTAAAGTTGCCTCAA+CGG | - | chr4_1:77516624-77516643 | None:intergenic | 45.0% |
| ! | TGAGGACTGCTCGCAATTTT+CGG | - | chr4_1:77516665-77516684 | None:intergenic | 45.0% |
| AAAATTGCGAGCAGTCCTCA+TGG | + | chr4_1:77516665-77516684 | Msa0574140:CDS | 45.0% | |
| CACGTGATAACAAGGTATGC+AGG | + | chr4_1:77516690-77516709 | Msa0574140:intron | 45.0% | |
| AACAGACAATGATGCGCTAG+CGG | - | chr4_1:77516805-77516824 | None:intergenic | 45.0% | |
| AAAGCCGGCATTTCTTGTGT+TGG | + | chr4_1:77517297-77517316 | Msa0574140:intron | 45.0% | |
| AGCTCCAGTTATAGCAGCAT+TGG | - | chr4_1:77517634-77517653 | None:intergenic | 45.0% | |
| GCTGCTATAACTGGAGCTAT+TGG | + | chr4_1:77517636-77517655 | Msa0574140:CDS | 45.0% | |
| ! | TGGTGGTGATGAATAACCAG+AGG | - | chr4_1:77517664-77517683 | None:intergenic | 45.0% |
| GATCCATCGTTTGGAAAGCT+AGG | + | chr4_1:77517729-77517748 | Msa0574140:CDS | 45.0% | |
| ! | TGTCCTAGCTTTCCAAACGA+TGG | - | chr4_1:77517735-77517754 | None:intergenic | 45.0% |
| GTTTGGAAAGCTAGGACAAC+AGG | + | chr4_1:77517737-77517756 | Msa0574140:CDS | 45.0% | |
| ! | GGCAGTTCAGGGGTTTATTT+TGG | + | chr4_1:77517780-77517799 | Msa0574140:intron | 45.0% |
| GCTTCCATCTTTGCTCAATG+TGG | + | chr4_1:77518085-77518104 | Msa0574140:intron | 45.0% | |
| ! | ATCCCTTTGGTGCAGGTTTA+AGG | + | chr4_1:77518193-77518212 | Msa0574140:intron | 45.0% |
| TTCATTGAGAACCAGTAGGG+GGG | - | chr4_1:77518287-77518306 | None:intergenic | 45.0% | |
| GACCAGAAGTGAACTTATCG+TGG | - | chr4_1:77518508-77518527 | None:intergenic | 45.0% | |
| TATCAGGCAAATCCTGTCAG+AGG | + | chr4_1:77518662-77518681 | Msa0574140:intron | 45.0% | |
| GACAGGAGACAAAGATGAAG+AGG | - | chr4_1:77518699-77518718 | None:intergenic | 45.0% | |
| AATGTTGAAGGTCCAACACG+AGG | - | chr4_1:77518728-77518747 | None:intergenic | 45.0% | |
| CGTGTTGGACCTTCAACATT+AGG | + | chr4_1:77518728-77518747 | Msa0574140:CDS | 45.0% | |
| AAACAGAGCAAAGCTCCTTC+AGG | - | chr4_1:77518895-77518914 | None:intergenic | 45.0% | |
| CAGGCCACAAAAACACTTAC+AGG | + | chr4_1:77518932-77518951 | Msa0574140:CDS | 45.0% | |
| GTTTGGAAAGGGAAAAAGCG+GGG | - | chr4_1:77519102-77519121 | None:intergenic | 45.0% | |
| ! | TGAGCGGGCATTGTCTATTA+TGG | + | chr4_1:77519154-77519173 | Msa0574140:intron | 45.0% |
| ! | GCTGCTGTTTACAGCTCAAA+AGG | - | chr4_1:77519486-77519505 | None:intergenic | 45.0% |
| TAAACAGCAGCTTCCTCTGT+AGG | + | chr4_1:77519495-77519514 | Msa0574140:intron | 45.0% | |
| !! | CTTTCCTGCTTTTCCTACAG+AGG | - | chr4_1:77519511-77519530 | None:intergenic | 45.0% |
| CTCTGTAGGAAAAGCAGGAA+AGG | + | chr4_1:77519509-77519528 | Msa0574140:intron | 45.0% | |
| GACAAGCAATCCTGACAACT+GGG | - | chr4_1:77519826-77519845 | None:intergenic | 45.0% | |
| TGACAAGCAATCCTGACAAC+TGG | - | chr4_1:77519827-77519846 | None:intergenic | 45.0% | |
| TAAGCACACAGAAGATCGGA+CGG | + | chr4_1:77520083-77520102 | Msa0574140:CDS | 45.0% | |
| !! | CCATCAGCTTCCTTTTGGTT+TGG | - | chr4_1:77520144-77520163 | None:intergenic | 45.0% |
| CCAAACCAAAAGGAAGCTGA+TGG | + | chr4_1:77520141-77520160 | Msa0574140:CDS | 45.0% | |
| AACATCAGCACCATCTGAAC+TGG | - | chr4_1:77520232-77520251 | None:intergenic | 45.0% | |
| !! | GATGGTGCTGATGTTCCAAA+AGG | + | chr4_1:77520237-77520256 | Msa0574140:intron | 45.0% |
| GCTAAAGTTCCAGGAGACAT+TGG | - | chr4_1:77520267-77520286 | None:intergenic | 45.0% | |
| TCTTTCGCTCCTTGTCCATA+AGG | - | chr4_1:77520381-77520400 | None:intergenic | 45.0% | |
| AGATCTATGCAGAGCAAGAG+AGG | + | chr4_1:77520400-77520419 | Msa0574140:CDS | 45.0% | |
| GATCTATGCAGAGCAAGAGA+GGG | + | chr4_1:77520401-77520420 | Msa0574140:CDS | 45.0% | |
| AACCCCTCGTTCATAGCATT+TGG | + | chr4_1:77520541-77520560 | Msa0574140:intron | 45.0% | |
| GTCCAAATGCTATGAACGAG+GGG | - | chr4_1:77520546-77520565 | None:intergenic | 45.0% | |
| AATCGCAAGTTAGTAGCAGC+TGG | - | chr4_1:77520760-77520779 | None:intergenic | 45.0% | |
| GGATCCACCTGTAATAACGT+CGG | + | chr4_1:77521077-77521096 | Msa0574140:CDS | 45.0% | |
| TTTGCCGACGTTATTACAGG+TGG | - | chr4_1:77521084-77521103 | None:intergenic | 45.0% | |
| TGCTTTGCCGACGTTATTAC+AGG | - | chr4_1:77521087-77521106 | None:intergenic | 45.0% | |
| CACCATCACTTCAACACCTA+TGG | + | chr4_1:77521115-77521134 | Msa0574140:CDS | 45.0% | |
| !! | GACCATAGGTGTTGAAGTGA+TGG | - | chr4_1:77521120-77521139 | None:intergenic | 45.0% |
| !! | GTTGAAGTGATGGTGTTGCA+AGG | - | chr4_1:77521143-77521162 | None:intergenic | 45.0% |
| CACCATCACTTCAACACCTA+TGG | + | chr4_1:77521115-77521134 | Msa0574140:CDS | 45.0% | |
| !! | GACCATAGGTGTTGAAGTGA+TGG | - | chr4_1:77521120-77521139 | None:intergenic | 45.0% |
| !! | GTTGAAGTGATGGTGTTGCA+AGG | - | chr4_1:77521143-77521162 | None:intergenic | 45.0% |
| CACCATCACTTCAACACCTT+TGG | + | chr4_1:77521181-77521200 | Msa0574140:CDS | 45.0% | |
| !! | GACCAAAGGTGTTGAAGTGA+TGG | - | chr4_1:77521186-77521205 | None:intergenic | 45.0% |
| ATAGTGTTGCATGGGACCAA+AGG | - | chr4_1:77521200-77521219 | None:intergenic | 45.0% | |
| ! | TAGAAGTGATGGCGTTGCAA+GGG | - | chr4_1:77521241-77521260 | None:intergenic | 45.0% |
| !! | TTGAAGTGACGGTGTTGCAA+GGG | - | chr4_1:77521274-77521293 | None:intergenic | 45.0% |
| CGTCACTTCAACAACACCTT+TGG | + | chr4_1:77521283-77521302 | Msa0574140:CDS | 45.0% | |
| GGAAAAAAGGCCCTAGAAAG+GGG | - | chr4_1:77521645-77521664 | None:intergenic | 45.0% | |
| GATCGAATGGGTGAAGGTGA+GGG | + | chr4_1:77515741-77515760 | Msa0574140:exon | 50.0% | |
| CCTAAGACTGACCCCACTTT+GGG | - | chr4_1:77515915-77515934 | None:intergenic | 50.0% | |
| !! | ACTTGTTGTTGCGCCTTTGC+CGG | + | chr4_1:77516446-77516465 | Msa0574140:intron | 50.0% |
| CAGCCAATAAGTTCCGGCAA+AGG | - | chr4_1:77516462-77516481 | None:intergenic | 50.0% | |
| ! | GCTCGCAATTTTCGGCCTAA+AGG | - | chr4_1:77516657-77516676 | None:intergenic | 50.0% |
| ATCAGAAGTTGGGCCTCCAA+TGG | + | chr4_1:77517198-77517217 | Msa0574140:intron | 50.0% | |
| AAGTTGGGCCTCCAATGGTA+TGG | + | chr4_1:77517203-77517222 | Msa0574140:intron | 50.0% | |
| TGAAGGAAGTGAAGAGCGAC+AGG | + | chr4_1:77517557-77517576 | Msa0574140:CDS | 50.0% | |
| GCAGCCAATGCTGCTATAAC+TGG | + | chr4_1:77517627-77517646 | Msa0574140:CDS | 50.0% | |
| !! | ACTGGAGCTATTGGTTCCTC+TGG | + | chr4_1:77517645-77517664 | Msa0574140:CDS | 50.0% |
| AACGATGGATCCCTGATGGA+CGG | - | chr4_1:77517720-77517739 | None:intergenic | 50.0% | |
| TCCATCAGGGATCCATCGTT+TGG | + | chr4_1:77517720-77517739 | Msa0574140:CDS | 50.0% | |
| TCCAAACGATGGATCCCTGA+TGG | - | chr4_1:77517724-77517743 | None:intergenic | 50.0% | |
| !! | GACAGTCTGGCTCTCTTCAT+GGG | - | chr4_1:77518007-77518026 | None:intergenic | 50.0% |
| !! | AGACAGTCTGGCTCTCTTCA+TGG | - | chr4_1:77518008-77518027 | None:intergenic | 50.0% |
| ! | CACTCTAATCCCTTTGGTGC+AGG | + | chr4_1:77518186-77518205 | Msa0574140:intron | 50.0% |
| TCATTGAGAACCAGTAGGGG+GGG | - | chr4_1:77518286-77518305 | None:intergenic | 50.0% | |
| GCTTCAGTCGTCGTAGCAAA+AGG | - | chr4_1:77518314-77518333 | None:intergenic | 50.0% | |
| CAAGTATGTGACTGTGAGGC+CGG | + | chr4_1:77518466-77518485 | Msa0574140:intron | 50.0% | |
| AAGCTTCCTGCAGTTGAGAG+TGG | + | chr4_1:77518568-77518587 | Msa0574140:intron | 50.0% | |
| TAGCTTCCACTCTCAACTGC+AGG | - | chr4_1:77518577-77518596 | None:intergenic | 50.0% | |
| !! | AAAGATGAAGAGGGTGCTGC+AGG | - | chr4_1:77518689-77518708 | None:intergenic | 50.0% |
| ! | AAGGTCCAACACGAGGTACT+GGG | - | chr4_1:77518721-77518740 | None:intergenic | 50.0% |
| CATACAACCACAGCACCTGA+AGG | + | chr4_1:77518877-77518896 | Msa0574140:CDS | 50.0% | |
| GGGAAAAAGCGGGGTAAATG+TGG | - | chr4_1:77519093-77519112 | None:intergenic | 50.0% | |
| GCTTCCTCTGTAGGAAAAGC+AGG | + | chr4_1:77519504-77519523 | Msa0574140:intron | 50.0% | |
| TATGAAGCACGGACACTCCT+CGG | + | chr4_1:77519603-77519622 | Msa0574140:intron | 50.0% | |
| !! | TACAAGTGTCGGTGTCGTGT+CGG | - | chr4_1:77519670-77519689 | None:intergenic | 50.0% |
| ACGGATACGGACACAGAAAC+GGG | - | chr4_1:77519760-77519779 | None:intergenic | 50.0% | |
| CACGGATACGGACACAGAAA+CGG | - | chr4_1:77519761-77519780 | None:intergenic | 50.0% | |
| GGTAAACCTACCCAGTTGTC+AGG | + | chr4_1:77519813-77519832 | Msa0574140:intron | 50.0% | |
| AGCAATCCTGACAACTGGGT+AGG | - | chr4_1:77519822-77519841 | None:intergenic | 50.0% | |
| ! | TCTCCCCATCAGCTTCCTTT+TGG | - | chr4_1:77520149-77520168 | None:intergenic | 50.0% |
| AGCTGATGGGGAGAAAGTTG+TGG | + | chr4_1:77520155-77520174 | Msa0574140:CDS | 50.0% | |
| ! | GTGCTGATGTTCCAAAAGGG+AGG | + | chr4_1:77520241-77520260 | Msa0574140:CDS | 50.0% |
| !! | ATGGTGTTGCAAGGGACCAT+AGG | - | chr4_1:77521134-77521153 | None:intergenic | 50.0% |
| !! | ATGGTGTTGCAAGGGACCAT+AGG | - | chr4_1:77521134-77521153 | None:intergenic | 50.0% |
| ! | GTAGAAGTGATGGCGTTGCA+AGG | - | chr4_1:77521242-77521261 | None:intergenic | 50.0% |
| !! | GTTGAAGTGACGGTGTTGCA+AGG | - | chr4_1:77521275-77521294 | None:intergenic | 50.0% |
| ACAAGACTGCAAGGGACCAA+AGG | - | chr4_1:77521302-77521321 | None:intergenic | 50.0% | |
| !! | AGATGAGCAGAGGTACCGTT+TGG | + | chr4_1:77521382-77521401 | Msa0574140:three_prime_UTR | 50.0% |
| AGGCCCTAGAAAGGGGAATT+AGG | - | chr4_1:77521638-77521657 | None:intergenic | 50.0% | |
| AAAGCTCGTGAGAGAGAGGG+AGG | + | chr4_1:77515505-77515524 | Msa0574140:five_prime_UTR | 55.0% | |
| !! | AAAGTCCCTCGCGCCGTTTT+TGG | + | chr4_1:77515582-77515601 | Msa0574140:five_prime_UTR | 55.0% |
| !!! | AAGTCCCTCGCGCCGTTTTT+GGG | + | chr4_1:77515583-77515602 | Msa0574140:five_prime_UTR | 55.0% |
| AGATCCCAAAAACGGCGCGA+GGG | - | chr4_1:77515590-77515609 | None:intergenic | 55.0% | |
| CGATCGAATGGGTGAAGGTG+AGG | + | chr4_1:77515740-77515759 | Msa0574140:exon | 55.0% | |
| ! | GCAGGAAGAGGAGGAAGTGT+CGG | - | chr4_1:77515891-77515910 | None:intergenic | 55.0% |
| ACTTTGGGTGCAGGAAGAGG+AGG | - | chr4_1:77515900-77515919 | None:intergenic | 55.0% | |
| TCCTCTTCCTGCACCCAAAG+TGG | + | chr4_1:77515899-77515918 | Msa0574140:CDS | 55.0% | |
| CCTCTTCCTGCACCCAAAGT+GGG | + | chr4_1:77515900-77515919 | Msa0574140:CDS | 55.0% | |
| CTCTTCCTGCACCCAAAGTG+GGG | + | chr4_1:77515901-77515920 | Msa0574140:CDS | 55.0% | |
| CCCAAAGTGGGGTCAGTCTT+AGG | + | chr4_1:77515912-77515931 | Msa0574140:intron | 55.0% | |
| GCCTAAGACTGACCCCACTT+TGG | - | chr4_1:77515916-77515935 | None:intergenic | 55.0% | |
| GCGCCTTTGCCGGAACTTAT+TGG | + | chr4_1:77516456-77516475 | Msa0574140:intron | 55.0% | |
| GCGTCGGGGATATATTGCGA+TGG | + | chr4_1:77516542-77516561 | Msa0574140:CDS | 55.0% | |
| !! | GAGCGACAGGCTTTGTTCCA+TGG | + | chr4_1:77517570-77517589 | Msa0574140:CDS | 55.0% |
| GAGTTTGCGATGGCCCATTC+TGG | + | chr4_1:77518139-77518158 | Msa0574140:intron | 55.0% | |
| !! | GAGTGTCGGACAGCCAGAAT+GGG | - | chr4_1:77518155-77518174 | None:intergenic | 55.0% |
| !! | TGAGTGTCGGACAGCCAGAA+TGG | - | chr4_1:77518156-77518175 | None:intergenic | 55.0% |
| TGGCTGTCCGACACTCATAG+TGG | + | chr4_1:77518159-77518178 | Msa0574140:intron | 55.0% | |
| GAAGGTCCAACACGAGGTAC+TGG | - | chr4_1:77518722-77518741 | None:intergenic | 55.0% | |
| ! | CAAAGCTCCTTCAGGTGCTG+TGG | - | chr4_1:77518887-77518906 | None:intergenic | 55.0% |
| CACAGAAACGGGACACGACA+CGG | - | chr4_1:77519749-77519768 | None:intergenic | 55.0% | |
| !! | GGAGACATTGGCCTCCCTTT+TGG | - | chr4_1:77520255-77520274 | None:intergenic | 55.0% |
| AAAGGGAGGCCAATGTCTCC+TGG | + | chr4_1:77520255-77520274 | Msa0574140:CDS | 55.0% | |
| TGAGCCATCGACGCAGTTGA+GGG | - | chr4_1:77520333-77520352 | None:intergenic | 55.0% | |
| ATGAGCCATCGACGCAGTTG+AGG | - | chr4_1:77520334-77520353 | None:intergenic | 55.0% | |
| ATGGCGTTGCAAGGGACCAA+AGG | - | chr4_1:77521233-77521252 | None:intergenic | 55.0% | |
| CGCCATCACTTCTACGCCTT+CGG | + | chr4_1:77521247-77521266 | Msa0574140:CDS | 55.0% | |
| ! | GACCGAAGGCGTAGAAGTGA+TGG | - | chr4_1:77521252-77521271 | None:intergenic | 55.0% |
| CAGATCCCAAAAACGGCGCG+AGG | - | chr4_1:77515591-77515610 | None:intergenic | 60.0% | |
| TGGGGCGATCGAATGGGTGA+AGG | + | chr4_1:77515735-77515754 | Msa0574140:exon | 60.0% | |
| !! | CAACGCTTTTGGTGGCACGC+CGG | + | chr4_1:77515830-77515849 | Msa0574140:CDS | 60.0% |
| ! | TCCGGCAGAGGTGCAGTTAC+CGG | - | chr4_1:77515852-77515871 | None:intergenic | 60.0% |
| !! | GAAGTGTCGGCGGTGGTTGT+GGG | - | chr4_1:77515878-77515897 | None:intergenic | 60.0% |
| !! | GGAAGAGGAGGAAGTGTCGG+CGG | - | chr4_1:77515888-77515907 | None:intergenic | 60.0% |
| CCCACTTTGGGTGCAGGAAG+AGG | - | chr4_1:77515903-77515922 | None:intergenic | 60.0% | |
| ACTGACCCCACTTTGGGTGC+AGG | - | chr4_1:77515909-77515928 | None:intergenic | 60.0% | |
| GGCAAGACGAGAAGCCGTTG+AGG | + | chr4_1:77516607-77516626 | Msa0574140:CDS | 60.0% | |
| GGAACTCTGGCCGTCCATCA+GGG | + | chr4_1:77517707-77517726 | Msa0574140:CDS | 60.0% | |
| !! | CCAACACGAGGTACTGGGAC+AGG | - | chr4_1:77518716-77518735 | None:intergenic | 60.0% |
| CCTGTCCCAGTACCTCGTGT+TGG | + | chr4_1:77518713-77518732 | Msa0574140:CDS | 60.0% | |
| GCACGGACACTCCTCGGATT+AGG | + | chr4_1:77519609-77519628 | Msa0574140:intron | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | + | chr4_1:77519619-77519638 | Msa0574140:intron | 60.0% |
| GATTAGGCGTGTCCCGGTGT+CGG | + | chr4_1:77519625-77519644 | Msa0574140:intron | 60.0% | |
| ACACGACACGTGTCCGACAC+CGG | - | chr4_1:77519641-77519660 | None:intergenic | 60.0% | |
| !! | TGTCGGTGTCGTGTCGGTGT+CGG | - | chr4_1:77519664-77519683 | None:intergenic | 60.0% |
| AGCCATCGACGCAGTTGAGG+GGG | - | chr4_1:77520331-77520350 | None:intergenic | 60.0% | |
| GAGCCATCGACGCAGTTGAG+GGG | - | chr4_1:77520332-77520351 | None:intergenic | 60.0% | |
| CTGTTGCGCTGCCTCAGTAC+TGG | - | chr4_1:77521048-77521067 | None:intergenic | 60.0% | |
| ACTGAGGCAGCGCAACAGCA+AGG | + | chr4_1:77521050-77521069 | Msa0574140:CDS | 60.0% | |
| GCAGCGCAACAGCAAGGACT+GGG | + | chr4_1:77521056-77521075 | Msa0574140:CDS | 60.0% | |
| !! | ACGGTGTTGCAAGGGACCGA+AGG | - | chr4_1:77521266-77521285 | None:intergenic | 60.0% |
| GCCGGTAACTGCACCTCTGC+CGG | + | chr4_1:77515848-77515867 | Msa0574140:CDS | 65.0% | |
| GGTTGTGGGTGTTCCGGCAG+AGG | - | chr4_1:77515864-77515883 | None:intergenic | 65.0% | |
| GGCGGTGGTTGTGGGTGTTC+CGG | - | chr4_1:77515870-77515889 | None:intergenic | 65.0% | |
| !! | GGAAGTGTCGGCGGTGGTTG+TGG | - | chr4_1:77515879-77515898 | None:intergenic | 65.0% |
| !! | AGAGGAGGAAGTGTCGGCGG+TGG | - | chr4_1:77515885-77515904 | None:intergenic | 65.0% |
| CGGAACTCTGGCCGTCCATC+AGG | + | chr4_1:77517706-77517725 | Msa0574140:CDS | 65.0% | |
| GAGAACCAGTAGGGGGGGCT+AGG | - | chr4_1:77518281-77518300 | None:intergenic | 65.0% | |
| ! | GGTGCTGCAGGACCTCTGAC+AGG | - | chr4_1:77518677-77518696 | None:intergenic | 65.0% |
| ACCGGGACACGCCTAATCCG+AGG | - | chr4_1:77519623-77519642 | None:intergenic | 65.0% | |
| CACGACACGTGTCCGACACC+GGG | - | chr4_1:77519640-77519659 | None:intergenic | 65.0% | |
| TGCCCCCTCAACTGCGTCGA+TGG | + | chr4_1:77520326-77520345 | Msa0574140:CDS | 65.0% | |
| GGCAGCGCAACAGCAAGGAC+TGG | + | chr4_1:77521055-77521074 | Msa0574140:CDS | 65.0% | |
| CGAAGCCTAGCCCCCCCTAC+TGG | + | chr4_1:77518273-77518292 | Msa0574140:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 77515407 | 77521750 | 77515407 | ID=Msa0574140;Name=Msa0574140 |
| chr4_1 | mRNA | 77515407 | 77521750 | 77515407 | ID=Msa0574140-mRNA-1;Parent=Msa0574140;Name=Msa0574140-mRNA-1;_AED=0.03;_eAED=0.03;_QI=340|0.66|0.5|1|0.66|0.6|10|389|590 |
| chr4_1 | exon | 77515407 | 77515922 | 77515407 | ID=Msa0574140-mRNA-1:exon:27321;Parent=Msa0574140-mRNA-1 |
| chr4_1 | exon | 77516318 | 77516425 | 77516318 | ID=Msa0574140-mRNA-1:exon:27322;Parent=Msa0574140-mRNA-1 |
| chr4_1 | exon | 77516526 | 77516703 | 77516526 | ID=Msa0574140-mRNA-1:exon:27323;Parent=Msa0574140-mRNA-1 |
| chr4_1 | exon | 77517411 | 77517611 | 77517411 | ID=Msa0574140-mRNA-1:exon:27324;Parent=Msa0574140-mRNA-1 |
| chr4_1 | exon | 77517627 | 77517758 | 77517627 | ID=Msa0574140-mRNA-1:exon:27325;Parent=Msa0574140-mRNA-1 |
| chr4_1 | exon | 77518668 | 77518771 | 77518668 | ID=Msa0574140-mRNA-1:exon:27326;Parent=Msa0574140-mRNA-1 |
| chr4_1 | exon | 77518859 | 77518953 | 77518859 | ID=Msa0574140-mRNA-1:exon:27327;Parent=Msa0574140-mRNA-1 |
| chr4_1 | exon | 77520064 | 77520231 | 77520064 | ID=Msa0574140-mRNA-1:exon:27328;Parent=Msa0574140-mRNA-1 |
| chr4_1 | exon | 77520238 | 77520458 | 77520238 | ID=Msa0574140-mRNA-1:exon:27329;Parent=Msa0574140-mRNA-1 |
| chr4_1 | exon | 77520972 | 77521750 | 77520972 | ID=Msa0574140-mRNA-1:exon:27330;Parent=Msa0574140-mRNA-1 |
| chr4_1 | five_prime_UTR | 77515407 | 77515746 | 77515407 | ID=Msa0574140-mRNA-1:five_prime_utr;Parent=Msa0574140-mRNA-1 |
| chr4_1 | CDS | 77515747 | 77515922 | 77515747 | ID=Msa0574140-mRNA-1:cds;Parent=Msa0574140-mRNA-1 |
| chr4_1 | CDS | 77516318 | 77516425 | 77516318 | ID=Msa0574140-mRNA-1:cds;Parent=Msa0574140-mRNA-1 |
| chr4_1 | CDS | 77516526 | 77516703 | 77516526 | ID=Msa0574140-mRNA-1:cds;Parent=Msa0574140-mRNA-1 |
| chr4_1 | CDS | 77517411 | 77517611 | 77517411 | ID=Msa0574140-mRNA-1:cds;Parent=Msa0574140-mRNA-1 |
| chr4_1 | CDS | 77517627 | 77517758 | 77517627 | ID=Msa0574140-mRNA-1:cds;Parent=Msa0574140-mRNA-1 |
| chr4_1 | CDS | 77518668 | 77518771 | 77518668 | ID=Msa0574140-mRNA-1:cds;Parent=Msa0574140-mRNA-1 |
| chr4_1 | CDS | 77518859 | 77518953 | 77518859 | ID=Msa0574140-mRNA-1:cds;Parent=Msa0574140-mRNA-1 |
| chr4_1 | CDS | 77520064 | 77520231 | 77520064 | ID=Msa0574140-mRNA-1:cds;Parent=Msa0574140-mRNA-1 |
| chr4_1 | CDS | 77520238 | 77520458 | 77520238 | ID=Msa0574140-mRNA-1:cds;Parent=Msa0574140-mRNA-1 |
| chr4_1 | CDS | 77520972 | 77521361 | 77520972 | ID=Msa0574140-mRNA-1:cds;Parent=Msa0574140-mRNA-1 |
| chr4_1 | three_prime_UTR | 77521362 | 77521750 | 77521362 | ID=Msa0574140-mRNA-1:three_prime_utr;Parent=Msa0574140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
