Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574380 | AET05311.1 | 86.800 | 500 | 46 | 4 | 1 | 482 | 1 | 498 | 0.0 | 873 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574380 | sp|Q8L3W1|VRN1_ARATH | 30.861 | 337 | 172 | 14 | 39 | 317 | 6 | 339 | 4.87e-34 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574380 | G7L911 | 86.800 | 500 | 46 | 4 | 1 | 482 | 1 | 498 | 0.0 | 873 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0574380 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574380 | MtrunA17_Chr8g0390841 | 82.983 | 523 | 46 | 5 | 1 | 482 | 1 | 521 | 0.0 | 859 |
| Msa0574380 | MtrunA17_Chr1g0208771 | 66.964 | 448 | 127 | 5 | 54 | 480 | 12 | 459 | 0.0 | 602 |
| Msa0574380 | MtrunA17_Chr1g0163071 | 46.205 | 303 | 128 | 10 | 55 | 326 | 2 | 300 | 4.23e-75 | 238 |
| Msa0574380 | MtrunA17_Chr7g0233561 | 34.494 | 316 | 150 | 9 | 37 | 314 | 16 | 312 | 1.33e-48 | 170 |
| Msa0574380 | MtrunA17_Chr3g0131891 | 32.622 | 328 | 166 | 9 | 37 | 332 | 17 | 321 | 5.89e-41 | 149 |
| Msa0574380 | MtrunA17_Chr3g0103181 | 31.169 | 308 | 143 | 9 | 37 | 313 | 10 | 279 | 2.93e-38 | 140 |
| Msa0574380 | MtrunA17_Chr3g0103181 | 39.583 | 96 | 56 | 2 | 384 | 478 | 185 | 279 | 2.34e-11 | 64.3 |
| Msa0574380 | MtrunA17_Chr7g0233541 | 33.220 | 295 | 146 | 11 | 55 | 314 | 2 | 280 | 3.75e-38 | 141 |
| Msa0574380 | MtrunA17_Chr7g0233521 | 34.138 | 290 | 133 | 10 | 55 | 314 | 2 | 263 | 3.27e-34 | 129 |
| Msa0574380 | MtrunA17_Chr7g0233531 | 32.526 | 289 | 139 | 7 | 55 | 314 | 2 | 263 | 1.34e-33 | 128 |
| Msa0574380 | MtrunA17_Chr3g0103191 | 31.206 | 282 | 128 | 11 | 31 | 280 | 4 | 251 | 3.70e-33 | 126 |
| Msa0574380 | MtrunA17_Chr1g0163181 | 26.464 | 461 | 262 | 17 | 48 | 477 | 14 | 428 | 1.96e-32 | 128 |
| Msa0574380 | MtrunA17_Chr3g0103151 | 40.385 | 156 | 78 | 3 | 31 | 173 | 4 | 157 | 4.35e-31 | 117 |
| Msa0574380 | MtrunA17_Chr3g0103171 | 28.179 | 291 | 148 | 9 | 54 | 313 | 5 | 265 | 2.09e-30 | 119 |
| Msa0574380 | MtrunA17_Chr3g0103171 | 39.583 | 144 | 75 | 6 | 339 | 478 | 130 | 265 | 5.70e-17 | 80.9 |
| Msa0574380 | MtrunA17_Chr1g0163201 | 25.108 | 462 | 220 | 16 | 54 | 477 | 18 | 391 | 8.12e-30 | 120 |
| Msa0574380 | MtrunA17_Chr7g0233571 | 31.839 | 223 | 123 | 5 | 39 | 248 | 10 | 216 | 3.33e-28 | 111 |
| Msa0574380 | MtrunA17_Chr4g0067431 | 28.615 | 325 | 178 | 15 | 36 | 322 | 12 | 320 | 1.35e-24 | 104 |
| Msa0574380 | MtrunA17_Chr5g0419201 | 31.351 | 185 | 109 | 4 | 24 | 193 | 1 | 182 | 4.22e-23 | 96.7 |
| Msa0574380 | MtrunA17_Chr1g0163251 | 29.795 | 292 | 151 | 13 | 48 | 312 | 14 | 278 | 1.43e-22 | 99.4 |
| Msa0574380 | MtrunA17_Chr3g0103201 | 27.530 | 247 | 119 | 7 | 97 | 313 | 4 | 220 | 9.92e-22 | 93.6 |
| Msa0574380 | MtrunA17_Chr1g0163261 | 27.742 | 310 | 165 | 10 | 38 | 318 | 8 | 287 | 9.11e-21 | 92.8 |
| Msa0574380 | MtrunA17_Chr5g0429931 | 26.182 | 275 | 147 | 10 | 54 | 314 | 10 | 242 | 3.98e-19 | 86.7 |
| Msa0574380 | MtrunA17_Chr3g0077451 | 25.623 | 281 | 140 | 8 | 53 | 317 | 10 | 237 | 7.18e-19 | 85.9 |
| Msa0574380 | MtrunA17_Chr1g0163221 | 25.776 | 322 | 174 | 14 | 36 | 322 | 8 | 299 | 3.18e-18 | 86.3 |
| Msa0574380 | MtrunA17_Chr4g0033961 | 29.518 | 166 | 105 | 2 | 39 | 192 | 6 | 171 | 4.34e-18 | 86.3 |
| Msa0574380 | MtrunA17_Chr4g0033961 | 31.638 | 177 | 97 | 7 | 171 | 324 | 224 | 399 | 2.04e-14 | 75.1 |
| Msa0574380 | MtrunA17_Chr3g0103161 | 40.952 | 105 | 52 | 4 | 377 | 477 | 24 | 122 | 6.89e-16 | 74.3 |
| Msa0574380 | MtrunA17_Chr1g0163231 | 23.762 | 303 | 182 | 9 | 32 | 312 | 2 | 277 | 9.00e-16 | 77.8 |
| Msa0574380 | MtrunA17_Chr1g0154041 | 20.683 | 556 | 304 | 20 | 52 | 477 | 28 | 576 | 9.67e-16 | 79.7 |
| Msa0574380 | MtrunA17_Chr3g0077411 | 22.526 | 293 | 187 | 7 | 31 | 313 | 254 | 516 | 1.34e-15 | 79.3 |
| Msa0574380 | MtrunA17_Chr1g0171611 | 24.333 | 300 | 172 | 10 | 32 | 312 | 2 | 265 | 2.44e-15 | 76.6 |
| Msa0574380 | MtrunA17_Chr1g0162441 | 35.000 | 100 | 59 | 1 | 39 | 132 | 7 | 106 | 1.57e-13 | 72.4 |
| Msa0574380 | MtrunA17_Chr6g0467351 | 33.010 | 103 | 62 | 2 | 36 | 131 | 12 | 114 | 7.42e-13 | 68.2 |
| Msa0574380 | MtrunA17_Chr1g0163061 | 34.483 | 116 | 64 | 4 | 26 | 131 | 1 | 114 | 1.36e-11 | 65.1 |
| Msa0574380 | MtrunA17_Chr1g0163191 | 34.444 | 90 | 51 | 2 | 48 | 131 | 14 | 101 | 1.80e-11 | 62.4 |
| Msa0574380 | MtrunA17_Chr1g0154161 | 22.074 | 299 | 190 | 10 | 44 | 320 | 36 | 313 | 2.71e-11 | 64.7 |
| Msa0574380 | MtrunA17_Chr1g0162411 | 36.471 | 85 | 54 | 0 | 39 | 123 | 7 | 91 | 4.85e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574380 | AT3G18990.1 | 30.861 | 337 | 172 | 14 | 39 | 317 | 6 | 339 | 4.95e-35 | 134 |
| Msa0574380 | AT3G18990.2 | 30.746 | 335 | 171 | 14 | 39 | 315 | 6 | 337 | 6.36e-34 | 131 |
| Msa0574380 | AT3G18960.2 | 36.538 | 104 | 60 | 1 | 38 | 135 | 29 | 132 | 5.09e-16 | 77.0 |
| Msa0574380 | AT4G01580.1 | 36.538 | 104 | 60 | 1 | 38 | 135 | 29 | 132 | 7.35e-16 | 76.3 |
| Msa0574380 | AT3G18960.1 | 36.538 | 104 | 60 | 1 | 38 | 135 | 29 | 132 | 7.71e-16 | 76.6 |
| Msa0574380 | AT1G49475.1 | 26.573 | 143 | 93 | 3 | 13 | 144 | 3 | 144 | 2.04e-12 | 66.2 |
| Msa0574380 | AT1G49480.3 | 34.821 | 112 | 53 | 5 | 224 | 317 | 115 | 224 | 3.23e-12 | 66.6 |
| Msa0574380 | AT1G49480.1 | 34.821 | 112 | 53 | 5 | 224 | 317 | 115 | 224 | 3.23e-12 | 66.6 |
| Msa0574380 | AT1G49480.2 | 34.821 | 112 | 53 | 5 | 224 | 317 | 115 | 224 | 3.23e-12 | 66.6 |
| Msa0574380 | AT3G18960.3 | 37.500 | 88 | 49 | 1 | 54 | 135 | 8 | 95 | 1.80e-11 | 63.2 |
Find 72 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAACTTGTCCAAGTTAA+AGG | 0.118978 | 4_1:+77827113 | Msa0574380:CDS |
| GAACAAACTTGTTGAAAATT+TGG | 0.135205 | 4_1:+77826968 | Msa0574380:CDS |
| CTTGATCATGCTTCACATTT+AGG | 0.162093 | 4_1:-77827265 | None:intergenic |
| TGTCATGACAACAGTGAAAA+AGG | 0.224513 | 4_1:-77827357 | None:intergenic |
| CCTTTAACTTGGACAAGTTT+AGG | 0.279816 | 4_1:-77827113 | None:intergenic |
| TTAATGGAGATGGAATTAAT+TGG | 0.309089 | 4_1:+77827876 | Msa0574380:CDS |
| GTTTGTAGAGGAAAATAAAT+TGG | 0.310756 | 4_1:+77828682 | Msa0574380:CDS |
| GGAAGTACATTTGACTAAAA+AGG | 0.313078 | 4_1:+77826770 | Msa0574380:CDS |
| ATAGCAGAATGCATGTTTCT+TGG | 0.358393 | 4_1:-77825799 | None:intergenic |
| TATTTCTTAGTGAAAGCATT+TGG | 0.366998 | 4_1:-77826693 | None:intergenic |
| CTCAATTTCTTATGTGGTTG+AGG | 0.369014 | 4_1:-77827041 | None:intergenic |
| CTTCACATTTAGGCATTTAG+TGG | 0.383770 | 4_1:-77827255 | None:intergenic |
| TAATGGAGATGGAATTAATT+GGG | 0.397926 | 4_1:+77827877 | Msa0574380:CDS |
| AAAACTATCATGTCACATAA+AGG | 0.413575 | 4_1:+77827932 | Msa0574380:CDS |
| CATATTTAACAAGAGTACTT+TGG | 0.415158 | 4_1:+77826905 | Msa0574380:intron |
| TCGATCACCTTTCCTGTGAA+TGG | 0.421077 | 4_1:-77825719 | None:intergenic |
| ACTCAACTTGGTTGACGGTT+CGG | 0.425773 | 4_1:-77828645 | None:intergenic |
| TCTCATTATCCATGACTTGA+AGG | 0.426650 | 4_1:-77827589 | None:intergenic |
| TAGCAGAATGCATGTTTCTT+GGG | 0.427746 | 4_1:-77825798 | None:intergenic |
| CCAATTCTCAATTTCTTATG+TGG | 0.430787 | 4_1:-77827047 | None:intergenic |
| CTTGTGACACAAGTACTTCT+CGG | 0.432076 | 4_1:-77828561 | None:intergenic |
| AAACCTGTGGCATGTAAGAT+TGG | 0.435151 | 4_1:+77828610 | Msa0574380:CDS |
| ATATTTGGATTCACAAGGGT+TGG | 0.435488 | 4_1:+77826799 | Msa0574380:CDS |
| CCACATAAGAAATTGAGAAT+TGG | 0.439783 | 4_1:+77827047 | Msa0574380:CDS |
| AATTTATTATACCTTTAACT+TGG | 0.446187 | 4_1:-77827124 | None:intergenic |
| CTGGAGTATTGAGAAACATT+GGG | 0.449738 | 4_1:-77826734 | None:intergenic |
| CCTGTACTCAACTTGGTTGA+CGG | 0.457593 | 4_1:-77828650 | None:intergenic |
| TAGAATTACCTTGCGGTGGA+AGG | 0.460497 | 4_1:-77827775 | None:intergenic |
| TTTGATAATAATTTGAAAGT+GGG | 0.464811 | 4_1:+77827671 | Msa0574380:CDS |
| CGATCACCTTTCCTGTGAAT+GGG | 0.468197 | 4_1:-77825718 | None:intergenic |
| GATTTAGTCTTCTTGCATGT+AGG | 0.469068 | 4_1:-77826999 | None:intergenic |
| CTTGGAATGTTAAACATTGT+GGG | 0.475665 | 4_1:+77827615 | Msa0574380:CDS |
| TTTGAATCAGTTAATGGAGA+TGG | 0.481033 | 4_1:+77827866 | Msa0574380:intron |
| ACGCATTATTCTATAGATCA+TGG | 0.484415 | 4_1:+77826834 | Msa0574380:CDS |
| TTGGCATACCACAGGAAAGA+AGG | 0.492460 | 4_1:+77828187 | Msa0574380:intron |
| TCATGGATAATGAGAGAACT+TGG | 0.492868 | 4_1:+77827597 | Msa0574380:CDS |
| ATTTGATAATAATTTGAAAG+TGG | 0.495131 | 4_1:+77827670 | Msa0574380:CDS |
| TCTGGAGTATTGAGAAACAT+TGG | 0.498255 | 4_1:-77826735 | None:intergenic |
| ACTTGGAATGTTAAACATTG+TGG | 0.512866 | 4_1:+77827614 | Msa0574380:CDS |
| AACTTGGTTGACGGTTCGGA+TGG | 0.514973 | 4_1:-77828641 | None:intergenic |
| ACCTCAACAAATATTCAAGA+TGG | 0.526205 | 4_1:+77825841 | Msa0574380:CDS |
| GCTTTCACTAAGAAATATAG+TGG | 0.526593 | 4_1:+77826699 | Msa0574380:CDS |
| AGGTAACAATCTTAAAGAAA+CGG | 0.529659 | 4_1:-77825822 | None:intergenic |
| CGTTATCACCCTTCAAGTCA+TGG | 0.529744 | 4_1:+77827580 | Msa0574380:CDS |
| ACTCCAACCTGTACTCAACT+TGG | 0.532809 | 4_1:-77828657 | None:intergenic |
| TGTAGAGGAAAATAAATTGG+AGG | 0.533957 | 4_1:+77828685 | Msa0574380:CDS |
| GAGGAAAATAAATTGGAGGA+TGG | 0.537388 | 4_1:+77828689 | Msa0574380:CDS |
| TCGCCAATCTTACATGCCAC+AGG | 0.542280 | 4_1:-77828613 | None:intergenic |
| GACTTATGCCTCCCATTCAC+AGG | 0.545934 | 4_1:+77825707 | None:intergenic |
| CTCATTATCCATGACTTGAA+GGG | 0.556492 | 4_1:-77827588 | None:intergenic |
| AGAATTACCTTGCGGTGGAA+GGG | 0.557526 | 4_1:-77827774 | None:intergenic |
| TCATGCGGATGTTTACAAAC+CGG | 0.561557 | 4_1:+77828331 | Msa0574380:CDS |
| TCCATCTTGAATATTTGTTG+AGG | 0.562475 | 4_1:-77825842 | None:intergenic |
| CCGTCAACCAAGTTGAGTAC+AGG | 0.579549 | 4_1:+77828650 | Msa0574380:CDS |
| AGGTTGGAGTAAGTTTGTAG+AGG | 0.581140 | 4_1:+77828670 | Msa0574380:CDS |
| TGGTGATATTTGGATTCACA+AGG | 0.584168 | 4_1:+77826794 | Msa0574380:CDS |
| TTCACTTTGATAGTGAAATG+TGG | 0.584688 | 4_1:-77828302 | None:intergenic |
| ATTGGCGCAAGCGAAGATGT+TGG | 0.592501 | 4_1:+77827065 | Msa0574380:CDS |
| TGTGGGAGACATATTAGTAC+CGG | 0.594974 | 4_1:+77827632 | Msa0574380:CDS |
| TTCCTATGCTAATAAATACA+TGG | 0.597714 | 4_1:+77827382 | Msa0574380:CDS |
| GAACATTCCCTTCCACCGCA+AGG | 0.608397 | 4_1:+77827767 | Msa0574380:CDS |
| CAGCTAGAATTACCTTGCGG+TGG | 0.610142 | 4_1:-77827779 | None:intergenic |
| CACCATGTATTTATTAGCAT+AGG | 0.611640 | 4_1:-77827384 | None:intergenic |
| CAACCAAGTTGAGTACAGGT+TGG | 0.611957 | 4_1:+77828654 | Msa0574380:CDS |
| TATGTAAACCTCAAAATGAG+AGG | 0.618304 | 4_1:-77826886 | None:intergenic |
| ATGCCTCCCATTCACAGGAA+AGG | 0.618972 | 4_1:+77825712 | Msa0574380:CDS |
| TCACCTTTCCTGTGAATGGG+AGG | 0.620298 | 4_1:-77825715 | None:intergenic |
| CAAAGTGAAATCAAGTCATG+CGG | 0.640337 | 4_1:+77828316 | Msa0574380:CDS |
| GGAGACATATTAGTACCGGA+TGG | 0.645661 | 4_1:+77827636 | Msa0574380:CDS |
| AAGTATTTGAAGGAAAAGCA+AGG | 0.649480 | 4_1:+77827557 | Msa0574380:intron |
| GGTGATATTTGGATTCACAA+GGG | 0.673550 | 4_1:+77826795 | Msa0574380:CDS |
| AATGTTTCTCAATACTCCAG+AGG | 0.715021 | 4_1:+77826737 | Msa0574380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTAAAATTTGAGA+AGG | - | chr4_1:77826012-77826031 | None:intergenic | 10.0% |
| !! | TTGCTTAAAAAAAAATTTAT+TGG | + | chr4_1:77826320-77826339 | Msa0574380:intron | 10.0% |
| !! | TCAAAAATCAAAATATTAAT+TGG | - | chr4_1:77827183-77827202 | None:intergenic | 10.0% |
| !!! | TTCTTTAAAAAAATTGGTTA+GGG | - | chr4_1:77826123-77826142 | None:intergenic | 15.0% |
| !!! | TTTGACTTCTTTAAAAAAAT+TGG | - | chr4_1:77826129-77826148 | None:intergenic | 15.0% |
| !! | TAACTGTTCTAATATTAAAA+TGG | + | chr4_1:77826157-77826176 | Msa0574380:intron | 15.0% |
| !! | AACTGTTCTAATATTAAAAT+GGG | + | chr4_1:77826158-77826177 | Msa0574380:intron | 15.0% |
| !!! | ATGATTTTTTTTTTAGTAGT+TGG | - | chr4_1:77826258-77826277 | None:intergenic | 15.0% |
| !!! | TTTAGGAATTTTTTTCAATT+TGG | - | chr4_1:77827099-77827118 | None:intergenic | 15.0% |
| !! | AATTTATTATACCTTTAACT+TGG | - | chr4_1:77827127-77827146 | None:intergenic | 15.0% |
| !!! | ATTTTTGAAGATGAATTATT+CGG | - | chr4_1:77827293-77827312 | None:intergenic | 15.0% |
| !!! | ATTTGATAATAATTTGAAAG+TGG | + | chr4_1:77827670-77827689 | Msa0574380:CDS | 15.0% |
| !!! | TTTGATAATAATTTGAAAGT+GGG | + | chr4_1:77827671-77827690 | Msa0574380:CDS | 15.0% |
| !!! | CTCTTTTTCATTCTTTAATT+TGG | + | chr4_1:77825891-77825910 | Msa0574380:intron | 20.0% |
| !!! | TCTTTAAAAAAATTGGTTAG+GGG | - | chr4_1:77826122-77826141 | None:intergenic | 20.0% |
| !!! | CTTCTTTAAAAAAATTGGTT+AGG | - | chr4_1:77826124-77826143 | None:intergenic | 20.0% |
| !! | TTTAATATTAGAACAGTTAG+TGG | - | chr4_1:77826156-77826175 | None:intergenic | 20.0% |
| !! | TAACATTTCCCTATTAAAAA+AGG | + | chr4_1:77826212-77826231 | Msa0574380:intron | 20.0% |
| !! | AACATTTCCCTATTAAAAAA+GGG | + | chr4_1:77826213-77826232 | Msa0574380:intron | 20.0% |
| !!! | AATTTGTTTGTTAATCAACA+AGG | - | chr4_1:77826347-77826366 | None:intergenic | 20.0% |
| !! | AAATAAAAGTTTAAGAGAGT+TGG | - | chr4_1:77826573-77826592 | None:intergenic | 20.0% |
| !! | AGGTATAATAAATTCATGAT+TGG | + | chr4_1:77827133-77827152 | Msa0574380:intron | 20.0% |
| !!! | TTTTGAACTAAAGTATTTGA+AGG | + | chr4_1:77827547-77827566 | Msa0574380:intron | 20.0% |
| !!! | AATTGATTTTTTGCTTTTGT+TGG | + | chr4_1:77828168-77828187 | Msa0574380:intron | 20.0% |
| !! | AAACATAATCATGAGATAAA+TGG | - | chr4_1:77828436-77828455 | None:intergenic | 20.0% |
| ! | AGGTAACAATCTTAAAGAAA+CGG | - | chr4_1:77825825-77825844 | None:intergenic | 25.0% |
| ! | GAAAGAAAGAATTGTTACAA+GGG | - | chr4_1:77825869-77825888 | None:intergenic | 25.0% |
| ! | TGAAAGAAAGAATTGTTACA+AGG | - | chr4_1:77825870-77825889 | None:intergenic | 25.0% |
| !!! | TTTGTCTAGACTTTAAGATT+AGG | + | chr4_1:77825964-77825983 | Msa0574380:intron | 25.0% |
| !!! | TTGTCTAGACTTTAAGATTA+GGG | + | chr4_1:77825965-77825984 | Msa0574380:intron | 25.0% |
| !!! | TTAGGAACCCTTTTTTAATA+GGG | - | chr4_1:77826223-77826242 | None:intergenic | 25.0% |
| !!! | ATTAGGAACCCTTTTTTAAT+AGG | - | chr4_1:77826224-77826243 | None:intergenic | 25.0% |
| ! | AAAAAGGGTTCCTAATAAAA+AGG | + | chr4_1:77826228-77826247 | Msa0574380:intron | 25.0% |
| !! | TCTCTAAAAATGTCAAATCT+TGG | + | chr4_1:77826516-77826535 | Msa0574380:intron | 25.0% |
| !! | CTCTAAAAATGTCAAATCTT+GGG | + | chr4_1:77826517-77826536 | Msa0574380:intron | 25.0% |
| ! | AAGAGAGAAATATACATATG+TGG | - | chr4_1:77826613-77826632 | None:intergenic | 25.0% |
| !!! | TATTTCTTAGTGAAAGCATT+TGG | - | chr4_1:77826696-77826715 | None:intergenic | 25.0% |
| !!! | CATATTTAACAAGAGTACTT+TGG | + | chr4_1:77826905-77826924 | Msa0574380:intron | 25.0% |
| !!! | GAACAAACTTGTTGAAAATT+TGG | + | chr4_1:77826968-77826987 | Msa0574380:CDS | 25.0% |
| ! | TTCCTATGCTAATAAATACA+TGG | + | chr4_1:77827382-77827401 | Msa0574380:CDS | 25.0% |
| !! | ACTTTAGTTCAAAATCTACT+GGG | - | chr4_1:77827541-77827560 | None:intergenic | 25.0% |
| !! | TACTTTAGTTCAAAATCTAC+TGG | - | chr4_1:77827542-77827561 | None:intergenic | 25.0% |
| ! | AAATGCAAAAAAATTCCATC+CGG | - | chr4_1:77827654-77827673 | None:intergenic | 25.0% |
| !!! | AAAGTACTAATTTTTCGACT+AGG | + | chr4_1:77827740-77827759 | Msa0574380:CDS | 25.0% |
| ! | TTTGTTGATCTCAAGAATAA+TGG | + | chr4_1:77827827-77827846 | Msa0574380:intron | 25.0% |
| ! | TTAATGGAGATGGAATTAAT+TGG | + | chr4_1:77827876-77827895 | Msa0574380:CDS | 25.0% |
| ! | TAATGGAGATGGAATTAATT+GGG | + | chr4_1:77827877-77827896 | Msa0574380:CDS | 25.0% |
| ! | AAAACTATCATGTCACATAA+AGG | + | chr4_1:77827932-77827951 | Msa0574380:CDS | 25.0% |
| ! | CAACAGTATTTAGTACAAAA+CGG | + | chr4_1:77828004-77828023 | Msa0574380:intron | 25.0% |
| !! | TGCTTATATTTAAGATCAGA+GGG | - | chr4_1:77828376-77828395 | None:intergenic | 25.0% |
| !! | TTGCTTATATTTAAGATCAG+AGG | - | chr4_1:77828377-77828396 | None:intergenic | 25.0% |
| ! | ATCATGAGATAAATGGTATT+TGG | - | chr4_1:77828429-77828448 | None:intergenic | 25.0% |
| ! | TACAGTTTAATAAAAACCTG+TGG | + | chr4_1:77828597-77828616 | Msa0574380:CDS | 25.0% |
| ! | GTTTGTAGAGGAAAATAAAT+TGG | + | chr4_1:77828682-77828701 | Msa0574380:CDS | 25.0% |
| ACCTCAACAAATATTCAAGA+TGG | + | chr4_1:77825841-77825860 | Msa0574380:CDS | 30.0% | |
| ! | TCCATCTTGAATATTTGTTG+AGG | - | chr4_1:77825845-77825864 | None:intergenic | 30.0% |
| ! | TACCTACATACATTTTGTGT+CGG | - | chr4_1:77825934-77825953 | None:intergenic | 30.0% |
| TTAAAATGGGTCATGTTAAC+CGG | + | chr4_1:77826171-77826190 | Msa0574380:intron | 30.0% | |
| !! | AGTTGGTGTTCCTTTTTATT+AGG | - | chr4_1:77826241-77826260 | None:intergenic | 30.0% |
| ATCATATTACCCTATTAGCA+AGG | - | chr4_1:77826484-77826503 | None:intergenic | 30.0% | |
| GCTTTCACTAAGAAATATAG+TGG | + | chr4_1:77826699-77826718 | Msa0574380:CDS | 30.0% | |
| ! | GGAAGTACATTTGACTAAAA+AGG | + | chr4_1:77826770-77826789 | Msa0574380:CDS | 30.0% |
| GTACATTTGACTAAAAAGGA+TGG | + | chr4_1:77826774-77826793 | Msa0574380:CDS | 30.0% | |
| CTAAAAAGGATGGTGATATT+TGG | + | chr4_1:77826784-77826803 | Msa0574380:CDS | 30.0% | |
| ACGCATTATTCTATAGATCA+TGG | + | chr4_1:77826834-77826853 | Msa0574380:CDS | 30.0% | |
| ! | TGAAAAAACCTCTCATTTTG+AGG | + | chr4_1:77826878-77826897 | Msa0574380:CDS | 30.0% |
| TATGTAAACCTCAAAATGAG+AGG | - | chr4_1:77826889-77826908 | None:intergenic | 30.0% | |
| CCAATTCTCAATTTCTTATG+TGG | - | chr4_1:77827050-77827069 | None:intergenic | 30.0% | |
| CCACATAAGAAATTGAGAAT+TGG | + | chr4_1:77827047-77827066 | Msa0574380:CDS | 30.0% | |
| CACCATGTATTTATTAGCAT+AGG | - | chr4_1:77827387-77827406 | None:intergenic | 30.0% | |
| AAGTATTTGAAGGAAAAGCA+AGG | + | chr4_1:77827557-77827576 | Msa0574380:intron | 30.0% | |
| ACTTGGAATGTTAAACATTG+TGG | + | chr4_1:77827614-77827633 | Msa0574380:CDS | 30.0% | |
| CTTGGAATGTTAAACATTGT+GGG | + | chr4_1:77827615-77827634 | Msa0574380:CDS | 30.0% | |
| ! | TGCTTTTGATCATCTCAAAA+AGG | - | chr4_1:77827706-77827725 | None:intergenic | 30.0% |
| ! | ATCTCCATTAACTGATTCAA+AGG | - | chr4_1:77827867-77827886 | None:intergenic | 30.0% |
| TTTGAATCAGTTAATGGAGA+TGG | + | chr4_1:77827866-77827885 | Msa0574380:intron | 30.0% | |
| !! | TAGTTTTACGTTCAACTCTA+GGG | - | chr4_1:77827919-77827938 | None:intergenic | 30.0% |
| !! | ATAGTTTTACGTTCAACTCT+AGG | - | chr4_1:77827920-77827939 | None:intergenic | 30.0% |
| ! | AACATTGTTGTGACTTCTTT+TGG | + | chr4_1:77827964-77827983 | Msa0574380:intron | 30.0% |
| ! | CGTTTTGTACTAAATACTGT+TGG | - | chr4_1:77828006-77828025 | None:intergenic | 30.0% |
| !! | TTCACTTTGATAGTGAAATG+TGG | - | chr4_1:77828305-77828324 | None:intergenic | 30.0% |
| ! | CTCATGATTATGTTTGAAAC+TGG | + | chr4_1:77828441-77828460 | Msa0574380:intron | 30.0% |
| TAATTCATGTCATGCATTCT+TGG | + | chr4_1:77828473-77828492 | Msa0574380:intron | 30.0% | |
| TGTAGAGGAAAATAAATTGG+AGG | + | chr4_1:77828685-77828704 | Msa0574380:CDS | 30.0% | |
| ! | TTTGATGCTCATATTTTCAG+AGG | + | chr4_1:77828755-77828774 | Msa0574380:CDS | 30.0% |
| TAGCAGAATGCATGTTTCTT+GGG | - | chr4_1:77825801-77825820 | None:intergenic | 35.0% | |
| ATAGCAGAATGCATGTTTCT+TGG | - | chr4_1:77825802-77825821 | None:intergenic | 35.0% | |
| TACCGACACAAAATGTATGT+AGG | + | chr4_1:77825929-77825948 | Msa0574380:intron | 35.0% | |
| !! | CTAGACTTTAAGATTAGGGT+CGG | + | chr4_1:77825969-77825988 | Msa0574380:intron | 35.0% |
| AATGTGAGAACCTTGCTAAT+AGG | + | chr4_1:77826471-77826490 | Msa0574380:intron | 35.0% | |
| ATGTGAGAACCTTGCTAATA+GGG | + | chr4_1:77826472-77826491 | Msa0574380:intron | 35.0% | |
| ! | TTTAAGAGAGTTGGTTCCTA+AGG | - | chr4_1:77826564-77826583 | None:intergenic | 35.0% |
| !! | TTTGGAATTTTCTGCAGTCA+TGG | - | chr4_1:77826678-77826697 | None:intergenic | 35.0% |
| !! | CTGGAGTATTGAGAAACATT+GGG | - | chr4_1:77826737-77826756 | None:intergenic | 35.0% |
| !! | TCTGGAGTATTGAGAAACAT+TGG | - | chr4_1:77826738-77826757 | None:intergenic | 35.0% |
| AATGTTTCTCAATACTCCAG+AGG | + | chr4_1:77826737-77826756 | Msa0574380:CDS | 35.0% | |
| ATACTCCAGAGGACAAAAAA+TGG | + | chr4_1:77826748-77826767 | Msa0574380:CDS | 35.0% | |
| TACTCCAGAGGACAAAAAAT+GGG | + | chr4_1:77826749-77826768 | Msa0574380:CDS | 35.0% | |
| TGGTGATATTTGGATTCACA+AGG | + | chr4_1:77826794-77826813 | Msa0574380:CDS | 35.0% | |
| GGTGATATTTGGATTCACAA+GGG | + | chr4_1:77826795-77826814 | Msa0574380:CDS | 35.0% | |
| ATATTTGGATTCACAAGGGT+TGG | + | chr4_1:77826799-77826818 | Msa0574380:CDS | 35.0% | |
| ! | GATTTAGTCTTCTTGCATGT+AGG | - | chr4_1:77827002-77827021 | None:intergenic | 35.0% |
| CTCAATTTCTTATGTGGTTG+AGG | - | chr4_1:77827044-77827063 | None:intergenic | 35.0% | |
| !! | CCTTTAACTTGGACAAGTTT+AGG | - | chr4_1:77827116-77827135 | None:intergenic | 35.0% |
| CCTAAACTTGTCCAAGTTAA+AGG | + | chr4_1:77827113-77827132 | Msa0574380:CDS | 35.0% | |
| ATGCATGTTCAATTTCTCAG+AGG | + | chr4_1:77827220-77827239 | Msa0574380:intron | 35.0% | |
| CTTCACATTTAGGCATTTAG+TGG | - | chr4_1:77827258-77827277 | None:intergenic | 35.0% | |
| CTTGATCATGCTTCACATTT+AGG | - | chr4_1:77827268-77827287 | None:intergenic | 35.0% | |
| GTCATGACAACAGTGAAAAA+GGG | - | chr4_1:77827359-77827378 | None:intergenic | 35.0% | |
| TGTCATGACAACAGTGAAAA+AGG | - | chr4_1:77827360-77827379 | None:intergenic | 35.0% | |
| CTCATTATCCATGACTTGAA+GGG | - | chr4_1:77827591-77827610 | None:intergenic | 35.0% | |
| TCTCATTATCCATGACTTGA+AGG | - | chr4_1:77827592-77827611 | None:intergenic | 35.0% | |
| TCATGGATAATGAGAGAACT+TGG | + | chr4_1:77827597-77827616 | Msa0574380:CDS | 35.0% | |
| AATCAGCTAGAATTACCTTG+CGG | - | chr4_1:77827785-77827804 | None:intergenic | 35.0% | |
| TCGTCCTTTGAATCAGTTAA+TGG | + | chr4_1:77827860-77827879 | Msa0574380:intron | 35.0% | |
| !! | GAAATGTGGATTTTTCAGAG+TGG | - | chr4_1:77828291-77828310 | None:intergenic | 35.0% |
| CAAAGTGAAATCAAGTCATG+CGG | + | chr4_1:77828316-77828335 | Msa0574380:CDS | 35.0% | |
| GAGGAAAATAAATTGGAGGA+TGG | + | chr4_1:77828689-77828708 | Msa0574380:CDS | 35.0% | |
| !! | TGTTTTTGAGCTCGTCAATA+AGG | + | chr4_1:77828721-77828740 | Msa0574380:CDS | 35.0% |
| TAGGGTCGGTCTAATTAGAT+CGG | + | chr4_1:77825983-77826002 | Msa0574380:intron | 40.0% | |
| AAATGTTAACCAGTGTCCTG+GGG | - | chr4_1:77826200-77826219 | None:intergenic | 40.0% | |
| GAAATGTTAACCAGTGTCCT+GGG | - | chr4_1:77826201-77826220 | None:intergenic | 40.0% | |
| !!! | ACTTCCCATTTTTTGTCCTC+TGG | - | chr4_1:77826756-77826775 | None:intergenic | 40.0% |
| CAAAATCTACTGGGATGTAC+TGG | - | chr4_1:77827532-77827551 | None:intergenic | 40.0% | |
| TGTGGGAGACATATTAGTAC+CGG | + | chr4_1:77827632-77827651 | Msa0574380:CDS | 40.0% | |
| GTTCAGTAGCAGCTATATAG+TGG | + | chr4_1:77828028-77828047 | Msa0574380:intron | 40.0% | |
| CCGTGATTCGCAAAAAATGA+CGG | - | chr4_1:77828080-77828099 | None:intergenic | 40.0% | |
| !!! | CCGTCATTTTTTGCGAATCA+CGG | + | chr4_1:77828077-77828096 | Msa0574380:intron | 40.0% |
| TCATGCGGATGTTTACAAAC+CGG | + | chr4_1:77828331-77828350 | Msa0574380:CDS | 40.0% | |
| AGAGTGTGTGTATTGCTTAC+CGG | - | chr4_1:77828353-77828372 | None:intergenic | 40.0% | |
| TGTGTATACGCTGCAGTTAA+CGG | - | chr4_1:77828532-77828551 | None:intergenic | 40.0% | |
| CTTGTGACACAAGTACTTCT+CGG | - | chr4_1:77828564-77828583 | None:intergenic | 40.0% | |
| AAACCTGTGGCATGTAAGAT+TGG | + | chr4_1:77828610-77828629 | Msa0574380:CDS | 40.0% | |
| AGGTTGGAGTAAGTTTGTAG+AGG | + | chr4_1:77828670-77828689 | Msa0574380:CDS | 40.0% | |
| CGATCACCTTTCCTGTGAAT+GGG | - | chr4_1:77825721-77825740 | None:intergenic | 45.0% | |
| TCGATCACCTTTCCTGTGAA+TGG | - | chr4_1:77825722-77825741 | None:intergenic | 45.0% | |
| AATGTTAACCAGTGTCCTGG+GGG | - | chr4_1:77826199-77826218 | None:intergenic | 45.0% | |
| GGAAATGTTAACCAGTGTCC+TGG | - | chr4_1:77826202-77826221 | None:intergenic | 45.0% | |
| GTCAAATCTTGGGACTTTGC+CGG | + | chr4_1:77826527-77826546 | Msa0574380:intron | 45.0% | |
| CGTTATCACCCTTCAAGTCA+TGG | + | chr4_1:77827580-77827599 | Msa0574380:CDS | 45.0% | |
| ! | GGAGACATATTAGTACCGGA+TGG | + | chr4_1:77827636-77827655 | Msa0574380:CDS | 45.0% |
| AGAATTACCTTGCGGTGGAA+GGG | - | chr4_1:77827777-77827796 | None:intergenic | 45.0% | |
| TAGAATTACCTTGCGGTGGA+AGG | - | chr4_1:77827778-77827797 | None:intergenic | 45.0% | |
| ! | TGCTTTTGTTGGCATACCAC+AGG | + | chr4_1:77828179-77828198 | Msa0574380:intron | 45.0% |
| TTGGCATACCACAGGAAAGA+AGG | + | chr4_1:77828187-77828206 | Msa0574380:intron | 45.0% | |
| TTGTGTTGCCTTCTTTCCTG+TGG | - | chr4_1:77828198-77828217 | None:intergenic | 45.0% | |
| ACTCAACTTGGTTGACGGTT+CGG | - | chr4_1:77828648-77828667 | None:intergenic | 45.0% | |
| CCTGTACTCAACTTGGTTGA+CGG | - | chr4_1:77828653-77828672 | None:intergenic | 45.0% | |
| ! | CAACCAAGTTGAGTACAGGT+TGG | + | chr4_1:77828654-77828673 | Msa0574380:CDS | 45.0% |
| ACTCCAACCTGTACTCAACT+TGG | - | chr4_1:77828660-77828679 | None:intergenic | 45.0% | |
| ATGCCTCCCATTCACAGGAA+AGG | + | chr4_1:77825712-77825731 | Msa0574380:CDS | 50.0% | |
| TCACCTTTCCTGTGAATGGG+AGG | - | chr4_1:77825718-77825737 | None:intergenic | 50.0% | |
| !! | TCCTAAGGCTTGCTAGAGTC+CGG | - | chr4_1:77826549-77826568 | None:intergenic | 50.0% |
| ATTGGCGCAAGCGAAGATGT+TGG | + | chr4_1:77827065-77827084 | Msa0574380:CDS | 50.0% | |
| CAGCTAGAATTACCTTGCGG+TGG | - | chr4_1:77827782-77827801 | None:intergenic | 50.0% | |
| TCGCCAATCTTACATGCCAC+AGG | - | chr4_1:77828616-77828635 | None:intergenic | 50.0% | |
| ! | AACTTGGTTGACGGTTCGGA+TGG | - | chr4_1:77828644-77828663 | None:intergenic | 50.0% |
| ! | CCGTCAACCAAGTTGAGTAC+AGG | + | chr4_1:77828650-77828669 | Msa0574380:CDS | 50.0% |
| GAACATTCCCTTCCACCGCA+AGG | + | chr4_1:77827767-77827786 | Msa0574380:CDS | 55.0% | |
| TCATGTTAACCGGTGCCCCC+AGG | + | chr4_1:77826181-77826200 | Msa0574380:intron | 60.0% | |
| GCCGGACTCTAGCAAGCCTT+AGG | + | chr4_1:77826545-77826564 | Msa0574380:intron | 60.0% | |
| ! | AACCAGTGTCCTGGGGGCAC+CGG | - | chr4_1:77826193-77826212 | None:intergenic | 65.0% |
| AACCGGTGCCCCCAGGACAC+TGG | + | chr4_1:77826188-77826207 | Msa0574380:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 77825712 | 77828787 | 77825712 | ID=Msa0574380;Name=Msa0574380 |
| chr4_1 | mRNA | 77825712 | 77828787 | 77825712 | ID=Msa0574380-mRNA-1;Parent=Msa0574380;Name=Msa0574380-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|0.71|0.62|8|0|482 |
| chr4_1 | exon | 77825712 | 77825870 | 77825712 | ID=Msa0574380-mRNA-1:exon:27476;Parent=Msa0574380-mRNA-1 |
| chr4_1 | exon | 77826687 | 77826899 | 77826687 | ID=Msa0574380-mRNA-1:exon:27477;Parent=Msa0574380-mRNA-1 |
| chr4_1 | exon | 77826918 | 77827134 | 77826918 | ID=Msa0574380-mRNA-1:exon:27478;Parent=Msa0574380-mRNA-1 |
| chr4_1 | exon | 77827240 | 77827403 | 77827240 | ID=Msa0574380-mRNA-1:exon:27479;Parent=Msa0574380-mRNA-1 |
| chr4_1 | exon | 77827569 | 77827788 | 77827569 | ID=Msa0574380-mRNA-1:exon:27480;Parent=Msa0574380-mRNA-1 |
| chr4_1 | exon | 77827876 | 77827953 | 77827876 | ID=Msa0574380-mRNA-1:exon:27481;Parent=Msa0574380-mRNA-1 |
| chr4_1 | exon | 77828201 | 77828352 | 77828201 | ID=Msa0574380-mRNA-1:exon:27482;Parent=Msa0574380-mRNA-1 |
| chr4_1 | exon | 77828542 | 77828787 | 77828542 | ID=Msa0574380-mRNA-1:exon:27483;Parent=Msa0574380-mRNA-1 |
| chr4_1 | CDS | 77825712 | 77825870 | 77825712 | ID=Msa0574380-mRNA-1:cds;Parent=Msa0574380-mRNA-1 |
| chr4_1 | CDS | 77826687 | 77826899 | 77826687 | ID=Msa0574380-mRNA-1:cds;Parent=Msa0574380-mRNA-1 |
| chr4_1 | CDS | 77826918 | 77827134 | 77826918 | ID=Msa0574380-mRNA-1:cds;Parent=Msa0574380-mRNA-1 |
| chr4_1 | CDS | 77827240 | 77827403 | 77827240 | ID=Msa0574380-mRNA-1:cds;Parent=Msa0574380-mRNA-1 |
| chr4_1 | CDS | 77827569 | 77827788 | 77827569 | ID=Msa0574380-mRNA-1:cds;Parent=Msa0574380-mRNA-1 |
| chr4_1 | CDS | 77827876 | 77827953 | 77827876 | ID=Msa0574380-mRNA-1:cds;Parent=Msa0574380-mRNA-1 |
| chr4_1 | CDS | 77828201 | 77828352 | 77828201 | ID=Msa0574380-mRNA-1:cds;Parent=Msa0574380-mRNA-1 |
| chr4_1 | CDS | 77828542 | 77828787 | 77828542 | ID=Msa0574380-mRNA-1:cds;Parent=Msa0574380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
