AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0574920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574920 MtrunA17_Chr8g0391911 82.879 257 33 2 1 253 1 250 1.98e-130 382
Msa0574920 MtrunA17_Chr6g0456631 88.304 171 19 1 1 170 1 171 5.98e-107 319
Msa0574920 MtrunA17_Chr4g0009851 40.562 249 119 3 9 257 11 230 2.72e-56 192
Msa0574920 MtrunA17_Chr4g0009901 41.473 258 121 4 1 257 1 229 1.71e-54 186
Msa0574920 MtrunA17_Chr1g0161431 40.075 267 131 6 8 256 10 265 4.46e-51 186
Msa0574920 MtrunA17_Chr3g0123131 39.615 260 142 7 8 260 12 263 1.56e-48 178
Msa0574920 MtrunA17_Chr8g0376881 38.202 267 136 6 7 260 23 273 3.07e-46 171
Msa0574920 MtrunA17_Chr4g0067981 41.036 251 137 7 7 253 29 272 1.01e-45 172
Msa0574920 MtrunA17_Chr2g0294911 39.516 248 143 4 7 253 27 268 1.60e-45 170
Msa0574920 MtrunA17_Chr3g0137101 36.667 300 148 8 6 282 5 285 1.98e-43 164
Msa0574920 MtrunA17_Chr1g0149851 33.731 335 193 7 5 312 1 333 7.02e-43 161
Msa0574920 MtrunA17_Chr6g0471041 38.750 240 114 6 14 251 19 227 4.82e-42 156
Msa0574920 MtrunA17_Chr1g0149841 38.400 250 147 5 7 253 3 248 1.12e-41 157
Msa0574920 MtrunA17_Chr8g0383961 52.593 135 62 2 4 137 9 142 2.11e-40 148
Msa0574920 MtrunA17_Chr7g0275891 35.106 282 160 7 6 272 2 275 2.87e-40 150
Msa0574920 MtrunA17_Chr2g0304841 35.273 275 130 9 7 253 16 270 5.08e-37 146
Msa0574920 MtrunA17_Chr4g0074401 33.582 268 139 6 5 253 13 260 1.43e-34 138
Msa0574920 MtrunA17_Chr4g0074411 33.716 261 137 6 9 253 18 258 2.32e-34 138
Msa0574920 MtrunA17_Chr7g0275401 31.818 286 165 8 5 274 1 272 7.83e-34 130
Msa0574920 MtrunA17_Chr4g0009981 36.408 206 102 3 52 257 1 177 5.32e-33 127
Msa0574920 MtrunA17_Chr1g0149831 38.806 201 90 6 67 253 1 182 2.06e-29 116
Msa0574920 MtrunA17_Chr3g0134461 33.603 247 107 7 1 245 1 192 1.18e-25 104
Msa0574920 MtrunA17_Chr4g0074421 33.505 194 120 4 58 250 2 187 1.39e-25 104
Msa0574920 MtrunA17_Chr4g0011071 33.540 161 80 2 54 214 35 168 1.43e-23 98.2
Msa0574920 MtrunA17_Chr4g0010001 48.750 80 41 0 9 88 10 89 4.51e-22 90.9
Msa0574920 MtrunA17_Chr5g0423031 50.000 80 40 0 9 88 10 89 9.29e-20 87.4
Msa0574920 MtrunA17_Chr3g0134481 36.220 127 79 2 5 130 4 129 1.59e-19 87.0
Msa0574920 MtrunA17_Chr8g0350761 25.524 286 156 8 11 260 19 283 1.01e-18 89.4
Msa0574920 MtrunA17_Chr4g0009991 35.172 145 65 3 101 245 1 116 2.60e-14 69.7
Msa0574920 MtrunA17_Chr7g0255711 48.684 76 37 1 180 255 77 150 8.94e-14 72.4
Msa0574920 MtrunA17_Chr6g0473731 30.337 178 84 4 89 257 10 156 3.94e-13 71.6
Msa0574920 MtrunA17_Chr4g0031961 50.725 69 32 1 187 255 124 190 6.38e-13 70.1
Msa0574920 MtrunA17_Chr5g0422621 36.937 111 63 2 143 253 153 256 2.87e-11 65.5
Msa0574920 MtrunA17_Chr5g0400241 56.897 58 23 1 193 250 310 365 9.42e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574920 AT1G67710.1 38.077 260 141 5 10 259 8 257 7.94e-47 172
Msa0574920 AT2G01760.1 36.466 266 157 5 5 261 3 265 7.54e-45 164
Msa0574920 AT2G25180.1 36.255 251 147 5 7 253 11 252 3.63e-41 158
Msa0574920 AT3G16857.1 36.667 270 138 8 9 253 33 294 6.80e-41 158
Msa0574920 AT3G16857.2 36.667 270 138 8 9 253 33 294 7.86e-41 158
Msa0574920 AT2G01760.2 32.993 294 157 6 5 261 3 293 6.42e-39 148
Msa0574920 AT4G31920.1 34.848 264 121 7 7 253 11 240 8.81e-36 142
Msa0574920 AT5G58080.1 37.984 258 149 7 7 262 12 260 1.13e-35 142
Msa0574920 AT1G67710.2 39.109 202 104 4 67 259 1 192 7.15e-35 137
Msa0574920 AT3G16857.3 37.229 231 112 8 48 253 2 224 2.00e-32 132
Msa0574920 AT5G49240.1 31.439 264 147 7 5 252 34 279 8.47e-31 122
Msa0574920 AT2G01760.3 36.453 203 118 4 67 261 1 200 2.78e-30 121
Msa0574920 AT1G49190.1 31.698 265 165 7 4 259 25 282 6.81e-30 122
Msa0574920 AT3G62670.1 31.544 298 177 8 14 304 42 319 2.16e-29 121
Msa0574920 AT1G67710.3 36.813 182 97 3 87 259 11 183 3.95e-27 115
Msa0574920 AT5G07210.2 24.633 341 208 11 13 324 16 336 4.43e-17 85.5
Msa0574920 AT1G49190.2 33.588 131 85 2 4 133 25 154 6.34e-17 84.7
Msa0574920 AT1G68210.1 29.412 272 156 9 8 248 8 274 8.33e-17 84.7
Msa0574920 AT5G07210.1 24.069 349 208 12 13 324 16 344 7.16e-15 78.2
Msa0574920 AT3G10760.1 42.478 113 50 3 143 255 67 164 5.72e-14 73.9
Msa0574920 AT5G59570.2 53.030 66 29 1 190 255 137 200 2.96e-13 71.2
Msa0574920 AT5G59570.1 53.030 66 29 1 190 255 137 200 2.96e-13 71.2
Msa0574920 AT2G40970.1 43.478 92 47 2 190 278 101 190 4.91e-13 69.7
Msa0574920 AT5G05090.1 47.619 84 31 2 170 253 68 138 5.75e-13 70.1
Msa0574920 AT3G46640.2 53.030 66 29 1 190 255 140 203 5.86e-13 70.9
Msa0574920 AT3G46640.1 53.030 66 29 1 190 255 140 203 5.86e-13 70.9
Msa0574920 AT3G46640.3 53.030 66 29 1 190 255 140 203 8.52e-13 70.1

Find 166 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCATCACTTGCCCTTATT+TGG 0.152523 4_1:-78673370 None:intergenic
TTCTTTGTCCGGGGTGGTTC+GGG 0.278029 4_1:-78673443 None:intergenic
CTTCTTTGTCCGGGGTGGTT+CGG 0.314627 4_1:-78673444 None:intergenic
GGTGACTGGTCCTCAGGCTC+AGG 0.325098 4_1:+78676301 Msa0574920:CDS
GGATTGAAGGTAGCCAAATA+AGG 0.326856 4_1:+78673357 Msa0574920:CDS
AATAATACTGTAACAGATTT+CGG 0.331250 4_1:+78674859 Msa0574920:CDS
TCTTCTTTGTCTTCTTTGTC+CGG 0.340590 4_1:-78673454 None:intergenic
CAATTAGTATATCTTGTGTT+AGG 0.345112 4_1:-78676401 None:intergenic
ATAATGAAGGCAATTGAAAA+TGG 0.347793 4_1:+78673218 Msa0574920:CDS
AAGGGTGGTGGTTGGTCCTC+AGG 0.351815 4_1:+78674966 Msa0574920:CDS
AAGGGTGGTGGCTGGTCCTC+AGG 0.380509 4_1:+78676175 Msa0574920:CDS
AAAGGTGGTGGCTGCTCGTC+AGG 0.385388 4_1:+78675044 Msa0574920:CDS
CTTCTTTGTCTTCTTTGTCC+GGG 0.397717 4_1:-78673453 None:intergenic
GCAGGTAGCTAGTCATCTTC+AGG 0.404754 4_1:+78673897 Msa0574920:CDS
CTTGAATTTGATAGCACAAA+AGG 0.421977 4_1:+78672964 Msa0574920:CDS
CATGATCATGCAGTTGGTCT+TGG 0.425207 4_1:+78674697 Msa0574920:CDS
GAGCTGGGAAGGGTGGTGGC+TGG 0.425258 4_1:+78674922 Msa0574920:CDS
AAGGATGGCGGCTGGTCCTC+AGG 0.425842 4_1:+78675008 Msa0574920:CDS
GCAAGTGGAGGTTGGTCCTC+AGG 0.426953 4_1:+78674894 Msa0574920:CDS
ACAAGAACTTTAACATTGGC+TGG 0.429953 4_1:-78672745 None:intergenic
AAGGGTGGTGGCTTGTCCTC+AGG 0.433345 4_1:+78676061 Msa0574920:CDS
CTCAGACTCAAAAGCTAAGA+AGG 0.436778 4_1:+78676156 Msa0574920:CDS
CTCAGCCTCAAGAGCTAGGA+AGG 0.439395 4_1:+78676360 Msa0574920:CDS
CTCAGGCTCAAGAGCTAGGA+AGG 0.446172 4_1:+78676318 Msa0574920:CDS
ATATGTGGCACCATGCTGTT+AGG 0.451110 4_1:+78673288 Msa0574920:CDS
CAACAATATCCAATGGCATA+TGG 0.455357 4_1:+78674547 Msa0574920:CDS
AATGAGCAATTGGGGATTGA+AGG 0.455531 4_1:+78673344 Msa0574920:CDS
AAATAAACATCAACAAGAAC+AGG 0.463567 4_1:+78674435 Msa0574920:CDS
CGAAGAAGGAGCGGGTTGTA+TGG 0.463660 4_1:+78673495 Msa0574920:CDS
AACACAAGATATACTAATTG+AGG 0.466931 4_1:+78676404 Msa0574920:CDS
CTCAGCCTCAAGAGCTAGGA+AGG 0.474289 4_1:+78674989 Msa0574920:CDS
TCAAGAGCTGGGAAGGGTGG+TGG 0.474375 4_1:+78674918 Msa0574920:CDS
CTCAGGTTCAAGAGCTGGGA+AGG 0.474845 4_1:+78674911 Msa0574920:CDS
CTCAGCCTCAAAAGCTAGGA+AGG 0.475835 4_1:+78676276 Msa0574920:CDS
CTCAACCTCAAAAGCTAGGA+AGG 0.475887 4_1:+78676042 Msa0574920:CDS
CTCAAGATCAAGAGCTAGGA+AGG 0.478408 4_1:+78674947 Msa0574920:CDS
CTCAACATCAAGAGCTAGGA+AGG 0.478408 4_1:+78675067 Msa0574920:CDS
CTCAGGCTCAAGAGCTAGGA+AGG 0.478532 4_1:+78676078 Msa0574920:CDS
CTCAGGCTCAAGAGCTAGGA+AGG 0.478532 4_1:+78676192 Msa0574920:CDS
TAAAGAATGCGTACTGGAAG+TGG 0.480432 4_1:-78673570 None:intergenic
AACAATTCTTGAACATATGA+AGG 0.483635 4_1:+78673855 Msa0574920:CDS
TATATTTACTTACTAATGAC+AGG 0.483959 4_1:-78673076 None:intergenic
TGGTCCTCAGGTTCAAGAGC+TGG 0.485261 4_1:+78674906 Msa0574920:CDS
TACAGCAGCATGTGAACTGT+TGG 0.487233 4_1:-78674482 None:intergenic
CCATGATGCAGGTTCGTGTT+GGG 0.494378 4_1:-78674625 None:intergenic
TGTTCTGAAGGATCAACAAA+TGG 0.496320 4_1:+78673194 Msa0574920:CDS
TTTCCCCTTCCTAGCTCTTG+AGG 0.499640 4_1:-78676365 None:intergenic
AGCTCTTGAGGCTGAGCTTG+AGG 0.500477 4_1:-78676113 None:intergenic
CGCTTAAACGATGTACCATC+GGG 0.502592 4_1:+78673401 Msa0574920:CDS
AAGGGTGGTGGCTACTCCAC+AGG 0.505062 4_1:+78676337 Msa0574920:CDS
TCCATGATGCAGGTTCGTGT+TGG 0.506466 4_1:-78674626 None:intergenic
ATCAACAAATGGAATAATGA+AGG 0.507137 4_1:+78673205 Msa0574920:CDS
AACGATGTACCATCGGGAAA+AGG 0.507903 4_1:+78673407 Msa0574920:CDS
CTTCCTAGCTCTTGATCTTG+AGG 0.508572 4_1:-78674946 None:intergenic
TGAAGCTGAAATGCCGGACA+TGG 0.511513 4_1:+78673009 Msa0574920:CDS
AAGAGCTAGGAAGGGGAAAG+AGG 0.511686 4_1:+78676369 Msa0574920:CDS
GAGCTAGGAATGGTGGTGGC+TGG 0.512918 4_1:+78676131 Msa0574920:CDS
TTCATCTGAGGAACATGCAT+TGG 0.513254 4_1:-78674787 None:intergenic
GGAGCAAGCTCTCATGGTTG+TGG 0.514199 4_1:+78674456 Msa0574920:CDS
GATTGAAGGTAGCCAAATAA+GGG 0.517817 4_1:+78673358 Msa0574920:CDS
GCCTAGACTTACAAGGGAGC+AGG 0.518181 4_1:+78673879 Msa0574920:CDS
GGTCCTCAGGCTCAAGAGCT+AGG 0.520740 4_1:+78675021 Msa0574920:CDS
TGTCCTCAGGCTCAAGAGCT+AGG 0.520740 4_1:+78676074 Msa0574920:CDS
GGTCCTCAGGCTCAAGAGCT+AGG 0.520740 4_1:+78676188 Msa0574920:CDS
CAAGCTCAGCCTCAAAAGCT+AGG 0.520799 4_1:+78676272 Msa0574920:CDS
AGCTCTTGAGGCTGAGCCTG+TGG 0.521609 4_1:-78676353 None:intergenic
CAGGCTCAGGCTCAAGAGCT+AGG 0.522151 4_1:+78676314 Msa0574920:CDS
CAAGCTCAGCCTCAAGAGCT+AGG 0.524513 4_1:+78676116 Msa0574920:CDS
AGTTGGTCTTGGAAACTTGA+TGG 0.528215 4_1:+78674708 Msa0574920:CDS
AATCACAAGAACTTTAACAT+TGG 0.529369 4_1:-78672749 None:intergenic
CAGGCTCAGCCTCAAGAGCT+AGG 0.529994 4_1:+78674985 Msa0574920:CDS
CAGGCTCAGCCTCAAGAGCT+AGG 0.529994 4_1:+78676356 Msa0574920:CDS
AAAATCAAGTAAAGTATATG+TGG 0.531620 4_1:+78673273 Msa0574920:CDS
AGAACAGGAGCAAGCTCTCA+TGG 0.536290 4_1:+78674450 Msa0574920:CDS
GCCTCAAGAGCTAGGAAGGA+TGG 0.540507 4_1:+78674993 Msa0574920:CDS
TCCACGATGTTGTCCACACT+CGG 0.540582 4_1:-78674832 None:intergenic
GAGCTAGGAAGGGTGGTGGC+TGG 0.541935 4_1:+78676089 Msa0574920:CDS
ACACAAGATATACTAATTGA+GGG 0.543203 4_1:+78676405 Msa0574920:CDS
GGTCCTCAGGTTCAAGAGCT+GGG 0.544277 4_1:+78674907 Msa0574920:CDS
TTCTTTGTCTTCTTTGTCCG+GGG 0.544906 4_1:-78673452 None:intergenic
AAATCAAATGAATCCATGTC+CGG 0.545425 4_1:-78673022 None:intergenic
GAAGACGAAGAAGACGAAGA+AGG 0.546374 4_1:+78673481 Msa0574920:CDS
AGCTCTTGAGGCTGAGCCTG+AGG 0.546926 4_1:-78674982 None:intergenic
AGCTCTTGAGCCTGAGCCTG+AGG 0.546926 4_1:-78676311 None:intergenic
ACATGCATTGGTGATTGTTG+TGG 0.548414 4_1:-78674775 None:intergenic
ACTGATCATGATCATGCAGT+TGG 0.548759 4_1:+78674691 Msa0574920:CDS
GGTTCAAGAGCTGGGAAGGG+TGG 0.548919 4_1:+78674915 Msa0574920:CDS
CCCAACACGAACCTGCATCA+TGG 0.549931 4_1:+78674625 Msa0574920:CDS
ATGTTGCATATCCATGATGC+AGG 0.557330 4_1:-78674636 None:intergenic
CAGGCTCAACATCAAGAGCT+AGG 0.558850 4_1:+78675063 Msa0574920:CDS
GAAGAAGACGAAGAAGGAGC+GGG 0.560032 4_1:+78673487 Msa0574920:CDS
CAGGCTCAACCTCAAAAGCT+AGG 0.561577 4_1:+78676038 Msa0574920:intron
TTTGTCTTCTTTGTCCGGGG+TGG 0.562381 4_1:-78673449 None:intergenic
CAGCCTCAAAAGCTAGGAAG+GGG 0.562802 4_1:+78676278 Msa0574920:CDS
AAGCTAAGAAGGGTGGTGGC+TGG 0.568049 4_1:+78676167 Msa0574920:CDS
AAGCTAGGAAGGGTGGTGGC+TGG 0.568049 4_1:+78676245 Msa0574920:CDS
GGCTGATGAGGAAAATGCCT+TGG 0.570075 4_1:-78674604 None:intergenic
TTTCCTAGCTCTTGAGCCTG+AGG 0.573303 4_1:-78675024 None:intergenic
GAGCTAGGAAGGATGGCGGC+TGG 0.575246 4_1:+78675000 Msa0574920:CDS
TGAAGGTGCCTAGACTTACA+AGG 0.576956 4_1:+78673872 Msa0574920:CDS
ACCTGCTCCCTTGTAAGTCT+AGG 0.577890 4_1:-78673880 None:intergenic
GGCTCAAGAGCTAGGAAGGG+TGG 0.577942 4_1:+78676196 Msa0574920:CDS
TGCATCATGGATATGCAACA+TGG 0.578384 4_1:+78674638 Msa0574920:CDS
GGCTCAAGAGCTAGGAAAGG+TGG 0.579566 4_1:+78675029 Msa0574920:CDS
GCCTCAAGAGCTAGGAATGG+TGG 0.580235 4_1:+78676124 Msa0574920:CDS
CAGCCTCAAGAGCTAGGAAG+GGG 0.581740 4_1:+78676362 Msa0574920:CDS
GGTCCTCAAGATCAAGAGCT+AGG 0.581757 4_1:+78674943 Msa0574920:CDS
TTCCCAGAAAATTGATACCA+AGG 0.582328 4_1:+78674587 Msa0574920:CDS
GGCTCAAGAGCTAGGAAGGG+TGG 0.582674 4_1:+78676082 Msa0574920:CDS
GGCTCAAGAGCTAGGAAGGG+TGG 0.582674 4_1:+78676322 Msa0574920:CDS
CTTCCTAGCTCTTGAGCCTG+AGG 0.585618 4_1:-78676191 None:intergenic
ACTACTTGAAGCTGAAATGC+CGG 0.587583 4_1:+78673003 Msa0574920:CDS
GAGCTAGGAAGGGTGGTGGT+TGG 0.591794 4_1:+78674958 Msa0574920:CDS
TCAAAAGCTAGGAAGGGTGG+TGG 0.595324 4_1:+78676049 Msa0574920:CDS
TTATGATGTTCTTGTTGCTG+AGG 0.596660 4_1:-78674751 None:intergenic
TGGTCTCAATTCAATTACCA+AGG 0.596923 4_1:+78672811 Msa0574920:CDS
GCCTCAAAAGCTAGGAAGGG+GGG 0.598080 4_1:+78676280 Msa0574920:CDS
GCTGTTAGGAAAATGATGAA+AGG 0.599623 4_1:+78673302 Msa0574920:CDS
ACGCTTAAACGATGTACCAT+CGG 0.602098 4_1:+78673400 Msa0574920:CDS
GAACTGCAACCATATGCCAT+TGG 0.602482 4_1:-78674556 None:intergenic
GACTCAAAAGCTAAGAAGGG+TGG 0.606980 4_1:+78676160 Msa0574920:CDS
TCAGCCTCAAAAGCTAGGAA+GGG 0.606989 4_1:+78676277 Msa0574920:CDS
GCTACAATGCAAGTGGAGGT+TGG 0.607441 4_1:+78674886 Msa0574920:CDS
GCCATCCTTCCTAGCTCTTG+AGG 0.607945 4_1:-78674994 None:intergenic
ACCTCAAAAGCTAGGAAGGG+TGG 0.610885 4_1:+78676046 Msa0574920:CDS
CGGTGAAGCTACAATGCAAG+TGG 0.610968 4_1:+78674879 Msa0574920:CDS
CTTCCCAGCTCTTGAACCTG+AGG 0.611183 4_1:-78674910 None:intergenic
TTGACTGCATTATTCATCTG+AGG 0.611554 4_1:-78674799 None:intergenic
TCAGTTATATAATATTCACT+TGG 0.614757 4_1:-78674673 None:intergenic
ACCACCATTCCTAGCTCTTG+AGG 0.617365 4_1:-78676125 None:intergenic
TCAGCCTCAAGAGCTAGGAA+GGG 0.618998 4_1:+78676361 Msa0574920:CDS
TCAAGAGCTAGGAAGGGTGG+TGG 0.619733 4_1:+78674954 Msa0574920:CDS
CTTCCTAGCTCTTGAGCCTG+AGG 0.620806 4_1:-78676077 None:intergenic
TCAGACTCAAAAGCTAAGAA+GGG 0.624156 4_1:+78676157 Msa0574920:CDS
TCAGGCTCAAGAGCTAGGAA+GGG 0.624572 4_1:+78676319 Msa0574920:CDS
TCAAAAGCTAAGAAGGGTGG+TGG 0.625735 4_1:+78676163 Msa0574920:CDS
AAGATATACCCGAACCACCC+CGG 0.626205 4_1:+78673435 Msa0574920:CDS
CGAAGAAGACGAAGAAGGAG+CGG 0.629169 4_1:+78673486 Msa0574920:CDS
TGCAGAACAACAATATCCAA+TGG 0.629974 4_1:+78674540 Msa0574920:CDS
GGCTGGAAACTCATTCCCAA+AGG 0.633277 4_1:-78672728 None:intergenic
CAATGATGTTGTACCGAGTG+TGG 0.635078 4_1:+78674819 Msa0574920:CDS
TCAGGTTCAAGAGCTGGGAA+GGG 0.636064 4_1:+78674912 Msa0574920:CDS
TCAAGAGCTAGGAAGGGTGG+TGG 0.636286 4_1:+78676085 Msa0574920:CDS
TCAAGAGCTAGGAAAGGTGG+TGG 0.637451 4_1:+78675032 Msa0574920:CDS
TCAAGAGCTAGGAATGGTGG+TGG 0.637451 4_1:+78676127 Msa0574920:CDS
TCAACCTCAAAAGCTAGGAA+GGG 0.637506 4_1:+78676043 Msa0574920:CDS
TCAAGAGCTAGGAAGGGTGG+TGG 0.638725 4_1:+78676325 Msa0574920:CDS
AGCCTCAAAAGCTAGGAAGG+GGG 0.642823 4_1:+78676279 Msa0574920:CDS
TCAGCCTCAAGAGCTAGGAA+TGG 0.643593 4_1:+78676121 Msa0574920:CDS
TCAATGCTATTGAGAAAACA+TGG 0.646799 4_1:+78672791 Msa0574920:CDS
AGATCAAGAGCTAGGAAGGG+TGG 0.650678 4_1:+78674951 Msa0574920:CDS
ACATCAAGAGCTAGGAAGGG+TGG 0.650678 4_1:+78675071 Msa0574920:CDS
AGGTTCGTGTTGGGCTGATG+AGG 0.653657 4_1:-78674616 None:intergenic
TCAGGCTCAAGAGCTAGGAA+AGG 0.654595 4_1:+78675026 Msa0574920:CDS
GCATCATGGATATGCAACAT+GGG 0.656904 4_1:+78674639 Msa0574920:CDS
GAAGGTGCCTAGACTTACAA+GGG 0.661563 4_1:+78673873 Msa0574920:CDS
TGAAGCTACAATGCAAGTGG+AGG 0.663678 4_1:+78674882 Msa0574920:CDS
ACCGAGTGTGGACAACATCG+TGG 0.681310 4_1:+78674831 Msa0574920:CDS
TCAGGCTCAAGAGCTAGGAA+GGG 0.685952 4_1:+78676079 Msa0574920:CDS
TCAGGCTCAAGAGCTAGGAA+GGG 0.685952 4_1:+78676193 Msa0574920:CDS
GCAGTGACGATGTGTTCTGA+AGG 0.690924 4_1:+78673182 Msa0574920:intron
TCAACATCAAGAGCTAGGAA+GGG 0.691703 4_1:+78675068 Msa0574920:CDS
TCAAGATCAAGAGCTAGGAA+GGG 0.696103 4_1:+78674948 Msa0574920:CDS
ATTACATGAGAAATTCACGA+AGG 0.711701 4_1:+78673526 Msa0574920:CDS
CTGTATTGAAATCATCACAG+TGG 0.740386 4_1:+78674500 Msa0574920:CDS
TCAAGAGCTAGGAAGGATGG+CGG 0.754981 4_1:+78674996 Msa0574920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAATTTGATTATTTA+TGG + chr4_1:78674002-78674021 Msa0574920:intron 10.0%
!!! ACATATTATTAATCTTTTAT+AGG + chr4_1:78674072-78674091 Msa0574920:intron 10.0%
!! ATATATTAATTTACAAACCT+TGG - chr4_1:78672831-78672850 None:intergenic 15.0%
!! AAGGTTTGTAAATTAATATA+TGG + chr4_1:78672830-78672849 Msa0574920:intron 15.0%
!! AAAGTTTAAATTTCAAAGAA+CGG - chr4_1:78673939-78673958 None:intergenic 15.0%
!! TGTCAAAAATGAATAAATAA+AGG + chr4_1:78673966-78673985 Msa0574920:intron 15.0%
!! AAATTTGATTATTTATGGTT+TGG + chr4_1:78674007-78674026 Msa0574920:intron 15.0%
!!! ATTTTGTTCATTTTTTGATA+AGG + chr4_1:78675360-78675379 Msa0574920:intron 15.0%
!!! TTTTGTTCATTTTTTGATAA+GGG + chr4_1:78675361-78675380 Msa0574920:intron 15.0%
!! TTATTTAGTAGTCATAATAA+TGG - chr4_1:78675681-78675700 None:intergenic 15.0%
!! ATTCAATAAACAATCAAAGA+AGG - chr4_1:78672858-78672877 None:intergenic 20.0%
!! TATATTTACTTACTAATGAC+AGG - chr4_1:78673079-78673098 None:intergenic 20.0%
!! AAAATCAAGTAAAGTATATG+TGG + chr4_1:78673273-78673292 Msa0574920:CDS 20.0%
!!! CTTTTGATAAAAACAAGAAT+AGG - chr4_1:78673596-78673615 None:intergenic 20.0%
!!! CTTTGTTTATTTTATTTCAG+AGG + chr4_1:78673822-78673841 Msa0574920:intron 20.0%
!!! ATATGTTCAAGAATTGTTTT+TGG - chr4_1:78673853-78673872 None:intergenic 20.0%
!!! AGGAATCTCAATATTTTTTA+TGG + chr4_1:78674092-78674111 Msa0574920:intron 20.0%
!!! ATTAGTCTTTAACTTTCATT+CGG + chr4_1:78674118-78674137 Msa0574920:intron 20.0%
!! TATTGTCTTGGTTTAATTAA+TGG - chr4_1:78674312-78674331 None:intergenic 20.0%
!! TCAGTTATATAATATTCACT+TGG - chr4_1:78674676-78674695 None:intergenic 20.0%
!! AATAATACTGTAACAGATTT+CGG + chr4_1:78674859-78674878 Msa0574920:CDS 20.0%
!!! AGTGAAAGAATGAATTTTTT+TGG - chr4_1:78675458-78675477 None:intergenic 20.0%
! AATCACAAGAACTTTAACAT+TGG - chr4_1:78672752-78672771 None:intergenic 25.0%
! AAAAAGATTGAGACTTTCAT+AGG - chr4_1:78672889-78672908 None:intergenic 25.0%
! ATCAACAAATGGAATAATGA+AGG + chr4_1:78673205-78673224 Msa0574920:CDS 25.0%
! ATAATGAAGGCAATTGAAAA+TGG + chr4_1:78673218-78673237 Msa0574920:CDS 25.0%
!! TTTACTTGATTTTCAGTGAA+TGG - chr4_1:78673266-78673285 None:intergenic 25.0%
! ACAAAAAATCAATGAGCAAT+TGG + chr4_1:78673334-78673353 Msa0574920:CDS 25.0%
! CAAAAAATCAATGAGCAATT+GGG + chr4_1:78673335-78673354 Msa0574920:CDS 25.0%
! AAAAAATCAATGAGCAATTG+GGG + chr4_1:78673336-78673355 Msa0574920:CDS 25.0%
! TTAGATGTTAGAGTAAACTA+CGG - chr4_1:78673633-78673652 None:intergenic 25.0%
!!! GACAGTGTAAAATTTGTTTT+TGG + chr4_1:78673735-78673754 Msa0574920:intron 25.0%
!!! TGTTTATTTTATTTCAGAGG+CGG + chr4_1:78673825-78673844 Msa0574920:intron 25.0%
! AACAATTCTTGAACATATGA+AGG + chr4_1:78673855-78673874 Msa0574920:CDS 25.0%
!! TTATGGTTTGGAAAATTTGA+CGG + chr4_1:78674019-78674038 Msa0574920:intron 25.0%
! TTCTGTTCGATTAAGTATTA+TGG - chr4_1:78674242-78674261 None:intergenic 25.0%
! TCTTGGTTTAATTAATGGTA+TGG - chr4_1:78674307-78674326 None:intergenic 25.0%
!! AGTGTACAATTTTATTGTCT+TGG - chr4_1:78674324-78674343 None:intergenic 25.0%
! AAATAAACATCAACAAGAAC+AGG + chr4_1:78674435-78674454 Msa0574920:CDS 25.0%
!!! TTTTGGGTATTTATAAAACC+GGG - chr4_1:78675433-78675452 None:intergenic 25.0%
!!! CTTTTGGGTATTTATAAAAC+CGG - chr4_1:78675434-78675453 None:intergenic 25.0%
!!! ATGAATTTTTTTGGCCTTTT+GGG - chr4_1:78675449-78675468 None:intergenic 25.0%
!!! AATGAATTTTTTTGGCCTTT+TGG - chr4_1:78675450-78675469 None:intergenic 25.0%
! AGGCGTAACAAAATATTTAA+TGG - chr4_1:78675558-78675577 None:intergenic 25.0%
!! TTTGTGATCAAGTATTTTGT+CGG + chr4_1:78675613-78675632 Msa0574920:intron 25.0%
!! TTCCTTTAAGTATTTTGTCT+AGG + chr4_1:78675648-78675667 Msa0574920:intron 25.0%
! AACCTAGACAAAATACTTAA+AGG - chr4_1:78675653-78675672 None:intergenic 25.0%
! CAATTAGTATATCTTGTGTT+AGG - chr4_1:78676404-78676423 None:intergenic 25.0%
TCAATGCTATTGAGAAAACA+TGG + chr4_1:78672791-78672810 Msa0574920:CDS 30.0%
! CTTTTGTGCTATCAAATTCA+AGG - chr4_1:78672966-78672985 None:intergenic 30.0%
! CTTGAATTTGATAGCACAAA+AGG + chr4_1:78672964-78672983 Msa0574920:CDS 30.0%
!!! ACAAAAGGTGCATTTTGATT+TGG + chr4_1:78672979-78672998 Msa0574920:CDS 30.0%
AAATCAAATGAATCCATGTC+CGG - chr4_1:78673025-78673044 None:intergenic 30.0%
ATTACATGAGAAATTCACGA+AGG + chr4_1:78673526-78673545 Msa0574920:CDS 30.0%
ATCATTAAAGTGACATGTAG+TGG + chr4_1:78673680-78673699 Msa0574920:intron 30.0%
! TATGGTTTGGAAAATTTGAC+GGG + chr4_1:78674020-78674039 Msa0574920:intron 30.0%
!! ATAGGATTTTGCCTGTTTTT+GGG - chr4_1:78675269-78675288 None:intergenic 30.0%
!!! AGGATTTTGATGGATTTTGA+AGG + chr4_1:78675337-78675356 Msa0574920:intron 30.0%
AATTGGGTCAATTTATGAAC+CGG - chr4_1:78675399-78675418 None:intergenic 30.0%
!! CGGTTTTATAAATACCCAAA+AGG + chr4_1:78675432-78675451 Msa0574920:intron 30.0%
TACTTGATCACAAATGAGTA+AGG - chr4_1:78675607-78675626 None:intergenic 30.0%
! TTGTGATCAAGTATTTTGTC+GGG + chr4_1:78675614-78675633 Msa0574920:intron 30.0%
TAAAATCGCAATCAAAATCG+AGG - chr4_1:78675825-78675844 None:intergenic 30.0%
! GACTTTTGTAGAATCGATAT+AGG - chr4_1:78675867-78675886 None:intergenic 30.0%
! AAATCGAAGGATTTTACTCA+AGG - chr4_1:78675889-78675908 None:intergenic 30.0%
AAAATCGCAATCAAAATCGA+AGG - chr4_1:78675824-78675843 None:intergenic 30.0%
TCAACTTAAAAAGCTAGGAA+GGG + chr4_1:78676235-78676254 Msa0574920:CDS 30.0%
ACAAGAACTTTAACATTGGC+TGG - chr4_1:78672748-78672767 None:intergenic 35.0%
TGGTCTCAATTCAATTACCA+AGG + chr4_1:78672811-78672830 Msa0574920:CDS 35.0%
!! TGTTCTGAAGGATCAACAAA+TGG + chr4_1:78673194-78673213 Msa0574920:CDS 35.0%
! TCATCATTTTCCTAACAGCA+TGG - chr4_1:78673301-78673320 None:intergenic 35.0%
GCTGTTAGGAAAATGATGAA+AGG + chr4_1:78673302-78673321 Msa0574920:CDS 35.0%
GATTGAAGGTAGCCAAATAA+GGG + chr4_1:78673358-78673377 Msa0574920:CDS 35.0%
AATCATCACTTGCCCTTATT+TGG - chr4_1:78673373-78673392 None:intergenic 35.0%
TCTTCTTTGTCTTCTTTGTC+CGG - chr4_1:78673457-78673476 None:intergenic 35.0%
AATAGGTAAAGAATGCGTAC+TGG - chr4_1:78673579-78673598 None:intergenic 35.0%
ATTACCAGTTTACCCTGAAA+AGG + chr4_1:78674147-78674166 Msa0574920:intron 35.0%
!! TTTGAGTTAGCTCCTTTTCA+GGG - chr4_1:78674162-78674181 None:intergenic 35.0%
CTGTATTGAAATCATCACAG+TGG + chr4_1:78674500-78674519 Msa0574920:CDS 35.0%
TGCAGAACAACAATATCCAA+TGG + chr4_1:78674540-78674559 Msa0574920:CDS 35.0%
CAACAATATCCAATGGCATA+TGG + chr4_1:78674547-78674566 Msa0574920:CDS 35.0%
TTCCCAGAAAATTGATACCA+AGG + chr4_1:78674587-78674606 Msa0574920:CDS 35.0%
! TGCCTTGGTATCAATTTTCT+GGG - chr4_1:78674592-78674611 None:intergenic 35.0%
! ATGCCTTGGTATCAATTTTC+TGG - chr4_1:78674593-78674612 None:intergenic 35.0%
TTATGATGTTCTTGTTGCTG+AGG - chr4_1:78674754-78674773 None:intergenic 35.0%
TTGACTGCATTATTCATCTG+AGG - chr4_1:78674802-78674821 None:intergenic 35.0%
!! AGTCGCGTTTTTGATAACAA+TGG - chr4_1:78675181-78675200 None:intergenic 35.0%
! GATAGGATTTTGCCTGTTTT+TGG - chr4_1:78675270-78675289 None:intergenic 35.0%
!! CGATTTTGTGCGATTTTGAT+AGG - chr4_1:78675287-78675306 None:intergenic 35.0%
! CAAAATCCTGCGATTTTGAA+GGG - chr4_1:78675326-78675345 None:intergenic 35.0%
! TCAAAATCCTGCGATTTTGA+AGG - chr4_1:78675327-78675346 None:intergenic 35.0%
! TCAAAATCGCAGGATTTTGA+TGG + chr4_1:78675327-78675346 Msa0574920:intron 35.0%
! ATAAGGGTCAATTTTTGACC+CGG + chr4_1:78675377-78675396 Msa0574920:intron 35.0%
ATTGGGTCAATTTATGAACC+GGG - chr4_1:78675398-78675417 None:intergenic 35.0%
! TGTAACTATTGAGGAAGTGT+GGG - chr4_1:78675484-78675503 None:intergenic 35.0%
ACACTTCCTCAATAGTTACA+CGG + chr4_1:78675484-78675503 Msa0574920:intron 35.0%
AGTAAGGCTATTAAGTGTCA+AGG - chr4_1:78675591-78675610 None:intergenic 35.0%
! AAGTATTTTGTCGGGCATTT+AGG + chr4_1:78675622-78675641 Msa0574920:intron 35.0%
TCGATATAGGATAGCAAAGT+CGG - chr4_1:78675854-78675873 None:intergenic 35.0%
TCGAAAGAGAGTAGCAAAAT+CGG - chr4_1:78675932-78675951 None:intergenic 35.0%
TCAGACTCAAAAGCTAAGAA+GGG + chr4_1:78676157-78676176 Msa0574920:CDS 35.0%
!!! AGCTTTTTAAGTTGAGCATG+TGG - chr4_1:78676230-78676249 None:intergenic 35.0%
CATGCTCAACTTAAAAAGCT+AGG + chr4_1:78676230-78676249 Msa0574920:CDS 35.0%
CTCAACTTAAAAAGCTAGGA+AGG + chr4_1:78676234-78676253 Msa0574920:CDS 35.0%
ACTACTTGAAGCTGAAATGC+CGG + chr4_1:78673003-78673022 Msa0574920:CDS 40.0%
AATGAGCAATTGGGGATTGA+AGG + chr4_1:78673344-78673363 Msa0574920:CDS 40.0%
GGATTGAAGGTAGCCAAATA+AGG + chr4_1:78673357-78673376 Msa0574920:CDS 40.0%
ACGCTTAAACGATGTACCAT+CGG + chr4_1:78673400-78673419 Msa0574920:CDS 40.0%
TTCTTTGTCTTCTTTGTCCG+GGG - chr4_1:78673455-78673474 None:intergenic 40.0%
CTTCTTTGTCTTCTTTGTCC+GGG - chr4_1:78673456-78673475 None:intergenic 40.0%
TAAAGAATGCGTACTGGAAG+TGG - chr4_1:78673573-78673592 None:intergenic 40.0%
!! GTTTGAGTTAGCTCCTTTTC+AGG - chr4_1:78674163-78674182 None:intergenic 40.0%
ATGTTGCATATCCATGATGC+AGG - chr4_1:78674639-78674658 None:intergenic 40.0%
TGCATCATGGATATGCAACA+TGG + chr4_1:78674638-78674657 Msa0574920:CDS 40.0%
GCATCATGGATATGCAACAT+GGG + chr4_1:78674639-78674658 Msa0574920:CDS 40.0%
ACTGATCATGATCATGCAGT+TGG + chr4_1:78674691-78674710 Msa0574920:CDS 40.0%
!! AGTTGGTCTTGGAAACTTGA+TGG + chr4_1:78674708-78674727 Msa0574920:CDS 40.0%
! ACATGCATTGGTGATTGTTG+TGG - chr4_1:78674778-78674797 None:intergenic 40.0%
TTCATCTGAGGAACATGCAT+TGG - chr4_1:78674790-78674809 None:intergenic 40.0%
TCAAGATCAAGAGCTAGGAA+GGG + chr4_1:78674948-78674967 Msa0574920:CDS 40.0%
TCAACATCAAGAGCTAGGAA+GGG + chr4_1:78675068-78675087 Msa0574920:CDS 40.0%
! GTCGCAAAAACCAGGATTTT+GGG - chr4_1:78675209-78675228 None:intergenic 40.0%
! AGTCGCAAAAACCAGGATTT+TGG - chr4_1:78675210-78675229 None:intergenic 40.0%
!!! CTGTTTTTGGGACTTTGCTA+TGG - chr4_1:78675257-78675276 None:intergenic 40.0%
CATAGCAAAGTCCCAAAAAC+AGG + chr4_1:78675255-78675274 Msa0574920:intron 40.0%
TGAAATCCCTTCAAAATCGC+AGG + chr4_1:78675317-78675336 Msa0574920:intron 40.0%
CCGGGTCATGAATTCAAATT+GGG - chr4_1:78675415-78675434 None:intergenic 40.0%
CCCAATTTGAATTCATGACC+CGG + chr4_1:78675412-78675431 Msa0574920:intron 40.0%
ACCGGGTCATGAATTCAAAT+TGG - chr4_1:78675416-78675435 None:intergenic 40.0%
! TAACTATTGAGGAAGTGTGG+GGG - chr4_1:78675482-78675501 None:intergenic 40.0%
! GTAACTATTGAGGAAGTGTG+GGG - chr4_1:78675483-78675502 None:intergenic 40.0%
GTGTAACTATTGAGGAAGTG+TGG - chr4_1:78675485-78675504 None:intergenic 40.0%
CACTTCCTCAATAGTTACAC+GGG + chr4_1:78675485-78675504 Msa0574920:intron 40.0%
ACAATCCCGTGTAACTATTG+AGG - chr4_1:78675493-78675512 None:intergenic 40.0%
CGATATAGGATAGCAAAGTC+GGG - chr4_1:78675853-78675872 None:intergenic 40.0%
CGAAAGAGAGTAGCAAAATC+GGG - chr4_1:78675931-78675950 None:intergenic 40.0%
!! AGTCCCGATTTTGATAACCT+TGG + chr4_1:78675962-78675981 Msa0574920:intron 40.0%
CCACCAAGGTTATCAAAATC+GGG - chr4_1:78675968-78675987 None:intergenic 40.0%
GCCACCAAGGTTATCAAAAT+CGG - chr4_1:78675969-78675988 None:intergenic 40.0%
TCAACCTCAAAAGCTAGGAA+GGG + chr4_1:78676043-78676062 Msa0574920:CDS 40.0%
CTCAGACTCAAAAGCTAAGA+AGG + chr4_1:78676156-78676175 Msa0574920:CDS 40.0%
ACTTAAAAAGCTAGGAAGGG+TGG + chr4_1:78676238-78676257 Msa0574920:CDS 40.0%
ATATGTGGCACCATGCTGTT+AGG + chr4_1:78673288-78673307 Msa0574920:CDS 45.0%
CGCTTAAACGATGTACCATC+GGG + chr4_1:78673401-78673420 Msa0574920:CDS 45.0%
AACGATGTACCATCGGGAAA+AGG + chr4_1:78673407-78673426 Msa0574920:CDS 45.0%
GAAGACGAAGAAGACGAAGA+AGG + chr4_1:78673481-78673500 Msa0574920:CDS 45.0%
!! TGAAGGTGCCTAGACTTACA+AGG + chr4_1:78673872-78673891 Msa0574920:CDS 45.0%
!! GAAGGTGCCTAGACTTACAA+GGG + chr4_1:78673873-78673892 Msa0574920:CDS 45.0%
!! AGCTCCTTTTCAGGGTAAAC+TGG - chr4_1:78674154-78674173 None:intergenic 45.0%
TACAGCAGCATGTGAACTGT+TGG - chr4_1:78674485-78674504 None:intergenic 45.0%
GAACTGCAACCATATGCCAT+TGG - chr4_1:78674559-78674578 None:intergenic 45.0%
! CATGATCATGCAGTTGGTCT+TGG + chr4_1:78674697-78674716 Msa0574920:CDS 45.0%
CAATGATGTTGTACCGAGTG+TGG + chr4_1:78674819-78674838 Msa0574920:CDS 45.0%
TGAAGCTACAATGCAAGTGG+AGG + chr4_1:78674882-78674901 Msa0574920:CDS 45.0%
! CTTCCTAGCTCTTGATCTTG+AGG - chr4_1:78674949-78674968 None:intergenic 45.0%
CTCAAGATCAAGAGCTAGGA+AGG + chr4_1:78674947-78674966 Msa0574920:CDS 45.0%
CTCAACATCAAGAGCTAGGA+AGG + chr4_1:78675067-78675086 Msa0574920:CDS 45.0%
CGACTTAAGTCCCAAAATCC+TGG + chr4_1:78675196-78675215 Msa0574920:intron 45.0%
TACGCAAAGTCGCAAAAACC+AGG - chr4_1:78675217-78675236 None:intergenic 45.0%
AGTGTCAAGGCAAAGACTAG+AGG - chr4_1:78675578-78675597 None:intergenic 45.0%
!! CCCGATTTTGATAACCTTGG+TGG + chr4_1:78675965-78675984 Msa0574920:intron 45.0%
TCAACCTCAAGAGCTAGGAA+GGG + chr4_1:78676001-78676020 Msa0574920:intron 45.0%
CTCAACCTCAAAAGCTAGGA+AGG + chr4_1:78676042-78676061 Msa0574920:CDS 45.0%
GACTCAAAAGCTAAGAAGGG+TGG + chr4_1:78676160-78676179 Msa0574920:CDS 45.0%
TCAAAAGCTAAGAAGGGTGG+TGG + chr4_1:78676163-78676182 Msa0574920:CDS 45.0%
TAAAAAGCTAGGAAGGGTGG+TGG + chr4_1:78676241-78676260 Msa0574920:CDS 45.0%
!!! TAGCTTTTGAGGCTGAGCTT+GGG - chr4_1:78676273-78676292 None:intergenic 45.0%
TCAGCCTCAAAAGCTAGGAA+GGG + chr4_1:78676277-78676296 Msa0574920:CDS 45.0%
GGCTGGAAACTCATTCCCAA+AGG - chr4_1:78672731-78672750 None:intergenic 50.0%
TGAAGCTGAAATGCCGGACA+TGG + chr4_1:78673009-78673028 Msa0574920:CDS 50.0%
GCAGTGACGATGTGTTCTGA+AGG + chr4_1:78673182-78673201 Msa0574920:intron 50.0%
! TCTTCGTCACCTTTTCCCGA+TGG - chr4_1:78673419-78673438 None:intergenic 50.0%
AAGATATACCCGAACCACCC+CGG + chr4_1:78673435-78673454 Msa0574920:CDS 50.0%
TTTGTCTTCTTTGTCCGGGG+TGG - chr4_1:78673452-78673471 None:intergenic 50.0%
CGAAGAAGACGAAGAAGGAG+CGG + chr4_1:78673486-78673505 Msa0574920:CDS 50.0%
GAAGAAGACGAAGAAGGAGC+GGG + chr4_1:78673487-78673506 Msa0574920:CDS 50.0%
ACCTGCTCCCTTGTAAGTCT+AGG - chr4_1:78673883-78673902 None:intergenic 50.0%
GCAGGTAGCTAGTCATCTTC+AGG + chr4_1:78673897-78673916 Msa0574920:CDS 50.0%
AGAACAGGAGCAAGCTCTCA+TGG + chr4_1:78674450-78674469 Msa0574920:CDS 50.0%
GGCTGATGAGGAAAATGCCT+TGG - chr4_1:78674607-78674626 None:intergenic 50.0%
CCATGATGCAGGTTCGTGTT+GGG - chr4_1:78674628-78674647 None:intergenic 50.0%
TCCATGATGCAGGTTCGTGT+TGG - chr4_1:78674629-78674648 None:intergenic 50.0%
TCCACGATGTTGTCCACACT+CGG - chr4_1:78674835-78674854 None:intergenic 50.0%
CGGTGAAGCTACAATGCAAG+TGG + chr4_1:78674879-78674898 Msa0574920:CDS 50.0%
GCTACAATGCAAGTGGAGGT+TGG + chr4_1:78674886-78674905 Msa0574920:CDS 50.0%
TCAGGTTCAAGAGCTGGGAA+GGG + chr4_1:78674912-78674931 Msa0574920:CDS 50.0%
GGTCCTCAAGATCAAGAGCT+AGG + chr4_1:78674943-78674962 Msa0574920:CDS 50.0%
AGATCAAGAGCTAGGAAGGG+TGG + chr4_1:78674951-78674970 Msa0574920:CDS 50.0%
TCAAGAGCTAGGAAGGATGG+CGG + chr4_1:78674996-78675015 Msa0574920:CDS 50.0%
! TTTCCTAGCTCTTGAGCCTG+AGG - chr4_1:78675027-78675046 None:intergenic 50.0%
TCAGGCTCAAGAGCTAGGAA+AGG + chr4_1:78675026-78675045 Msa0574920:CDS 50.0%
TCAAGAGCTAGGAAAGGTGG+TGG + chr4_1:78675032-78675051 Msa0574920:CDS 50.0%
CAGGCTCAACATCAAGAGCT+AGG + chr4_1:78675063-78675082 Msa0574920:CDS 50.0%
ACATCAAGAGCTAGGAAGGG+TGG + chr4_1:78675071-78675090 Msa0574920:CDS 50.0%
TCAGGCTCAAGAGCTAGGAA+GGG + chr4_1:78675026-78675045 Msa0574920:CDS 50.0%
TCAGGCTCAAGAGCTAGGAA+GGG + chr4_1:78675026-78675045 Msa0574920:CDS 50.0%
AGCTCTTGAGGTTGAGCATG+TGG - chr4_1:78675996-78676015 None:intergenic 50.0%
CATGCTCAACCTCAAGAGCT+AGG + chr4_1:78675996-78676015 Msa0574920:intron 50.0%
CTCAACCTCAAGAGCTAGGA+AGG + chr4_1:78676000-78676019 Msa0574920:intron 50.0%
!!! AGCTTTTGAGGTTGAGCCTG+TGG - chr4_1:78676038-78676057 None:intergenic 50.0%
CAGGCTCAACCTCAAAAGCT+AGG + chr4_1:78676038-78676057 Msa0574920:intron 50.0%
ACCTCAAAAGCTAGGAAGGG+TGG + chr4_1:78676046-78676065 Msa0574920:CDS 50.0%
!! ACCACCCTTCCTAGCTTTTG+AGG - chr4_1:78676050-78676069 None:intergenic 50.0%
TCAAAAGCTAGGAAGGGTGG+TGG + chr4_1:78676049-78676068 Msa0574920:CDS 50.0%
TCAGGCTCAAGAGCTAGGAA+GGG + chr4_1:78675026-78675045 Msa0574920:CDS 50.0%
TCAGCCTCAAGAGCTAGGAA+TGG + chr4_1:78674990-78675009 Msa0574920:CDS 50.0%
! ACCACCATTCCTAGCTCTTG+AGG - chr4_1:78676128-78676147 None:intergenic 50.0%
TCAAGAGCTAGGAATGGTGG+TGG + chr4_1:78676127-78676146 Msa0574920:CDS 50.0%
TCAGGCTCAAGAGCTAGGAA+GGG + chr4_1:78675026-78675045 Msa0574920:CDS 50.0%
!!! AGCTTTTGAGGCTGAGCTTG+GGG - chr4_1:78676272-78676291 None:intergenic 50.0%
!!! CTAGCTTTTGAGGCTGAGCT+TGG - chr4_1:78676274-78676293 None:intergenic 50.0%
CAAGCTCAGCCTCAAAAGCT+AGG + chr4_1:78676272-78676291 Msa0574920:CDS 50.0%
CTCAGCCTCAAAAGCTAGGA+AGG + chr4_1:78676276-78676295 Msa0574920:CDS 50.0%
CAGCCTCAAAAGCTAGGAAG+GGG + chr4_1:78676278-78676297 Msa0574920:CDS 50.0%
AGCCTCAAAAGCTAGGAAGG+GGG + chr4_1:78676279-78676298 Msa0574920:CDS 50.0%
TCAGGCTCAAGAGCTAGGAA+GGG + chr4_1:78675026-78675045 Msa0574920:CDS 50.0%
TCAGCCTCAAGAGCTAGGAA+GGG + chr4_1:78674990-78675009 Msa0574920:CDS 50.0%
! TTTCCCCTTCCTAGCTCTTG+AGG - chr4_1:78676368-78676387 None:intergenic 50.0%
AAGAGCTAGGAAGGGGAAAG+AGG + chr4_1:78676369-78676388 Msa0574920:CDS 50.0%
TTCTTTGTCCGGGGTGGTTC+GGG - chr4_1:78673446-78673465 None:intergenic 55.0%
CTTCTTTGTCCGGGGTGGTT+CGG - chr4_1:78673447-78673466 None:intergenic 55.0%
!! CGAAGAAGGAGCGGGTTGTA+TGG + chr4_1:78673495-78673514 Msa0574920:CDS 55.0%
GCCTAGACTTACAAGGGAGC+AGG + chr4_1:78673879-78673898 Msa0574920:CDS 55.0%
GGAGCAAGCTCTCATGGTTG+TGG + chr4_1:78674456-78674475 Msa0574920:CDS 55.0%
AGGTTCGTGTTGGGCTGATG+AGG - chr4_1:78674619-78674638 None:intergenic 55.0%
CCCAACACGAACCTGCATCA+TGG + chr4_1:78674625-78674644 Msa0574920:CDS 55.0%
ACCGAGTGTGGACAACATCG+TGG + chr4_1:78674831-78674850 Msa0574920:CDS 55.0%
TGGTCCTCAGGTTCAAGAGC+TGG + chr4_1:78674906-78674925 Msa0574920:CDS 55.0%
GGTCCTCAGGTTCAAGAGCT+GGG + chr4_1:78674907-78674926 Msa0574920:CDS 55.0%
CTTCCCAGCTCTTGAACCTG+AGG - chr4_1:78674913-78674932 None:intergenic 55.0%
CTCAGGTTCAAGAGCTGGGA+AGG + chr4_1:78674911-78674930 Msa0574920:CDS 55.0%
TCAAGAGCTAGGAAGGGTGG+TGG + chr4_1:78674954-78674973 Msa0574920:CDS 55.0%
CTCAGCCTCAAGAGCTAGGA+AGG + chr4_1:78674989-78675008 Msa0574920:CDS 55.0%
GCCTCAAGAGCTAGGAAGGA+TGG + chr4_1:78674993-78675012 Msa0574920:CDS 55.0%
! GCCATCCTTCCTAGCTCTTG+AGG - chr4_1:78674997-78675016 None:intergenic 55.0%
GGCTCAAGAGCTAGGAAAGG+TGG + chr4_1:78675029-78675048 Msa0574920:CDS 55.0%
TCAAGAGCTAGGAAGGGTGG+TGG + chr4_1:78674954-78674973 Msa0574920:CDS 55.0%
AGCTCTTGAGCCTGAGCTTG+AGG - chr4_1:78675105-78675124 None:intergenic 55.0%
CAAGCTCAGGCTCAAGAGCT+AGG + chr4_1:78675105-78675124 Msa0574920:intron 55.0%
CTCAGGCTCAAGAGCTAGGA+AGG + chr4_1:78675025-78675044 Msa0574920:CDS 55.0%
! CTTCCTAGCTCTTGAGCCTG+AGG - chr4_1:78675111-78675130 None:intergenic 55.0%
CTCAGGCTCAAGAGCTAGGA+AGG + chr4_1:78675025-78675044 Msa0574920:CDS 55.0%
TCAAGAGCTAGGAAGGGTGG+TGG + chr4_1:78674954-78674973 Msa0574920:CDS 55.0%
ACCTCAAGAGCTAGGAAGGG+TGG + chr4_1:78676004-78676023 Msa0574920:intron 55.0%
! ACCACCCTTCCTAGCTCTTG+AGG - chr4_1:78674955-78674974 None:intergenic 55.0%
TGTCCTCAGGCTCAAGAGCT+AGG + chr4_1:78676074-78676093 Msa0574920:CDS 55.0%
! CTTCCTAGCTCTTGAGCCTG+AGG - chr4_1:78675111-78675130 None:intergenic 55.0%
CTCAGGCTCAAGAGCTAGGA+AGG + chr4_1:78675025-78675044 Msa0574920:CDS 55.0%
TCAAGAGCTAGGAAGGGTGG+TGG + chr4_1:78674954-78674973 Msa0574920:CDS 55.0%
AGCTCTTGAGGCTGAGCTTG+AGG - chr4_1:78676116-78676135 None:intergenic 55.0%
CAAGCTCAGCCTCAAGAGCT+AGG + chr4_1:78676116-78676135 Msa0574920:CDS 55.0%
GCCTCAAGAGCTAGGAATGG+TGG + chr4_1:78676124-78676143 Msa0574920:CDS 55.0%
! AAGCTAAGAAGGGTGGTGGC+TGG + chr4_1:78676167-78676186 Msa0574920:CDS 55.0%
! CTTCCTAGCTCTTGAGCCTG+AGG - chr4_1:78675111-78675130 None:intergenic 55.0%
CTCAGGCTCAAGAGCTAGGA+AGG + chr4_1:78675025-78675044 Msa0574920:CDS 55.0%
GCCTCAAAAGCTAGGAAGGG+GGG + chr4_1:78676280-78676299 Msa0574920:CDS 55.0%
!! ACCCCCCTTCCTAGCTTTTG+AGG - chr4_1:78676284-78676303 None:intergenic 55.0%
CTCAGGCTCAAGAGCTAGGA+AGG + chr4_1:78675025-78675044 Msa0574920:CDS 55.0%
TCAAGAGCTAGGAAGGGTGG+TGG + chr4_1:78674954-78674973 Msa0574920:CDS 55.0%
CTCAGCCTCAAGAGCTAGGA+AGG + chr4_1:78674989-78675008 Msa0574920:CDS 55.0%
CAGCCTCAAGAGCTAGGAAG+GGG + chr4_1:78674991-78675010 Msa0574920:CDS 55.0%
! GCAAGTGGAGGTTGGTCCTC+AGG + chr4_1:78674894-78674913 Msa0574920:CDS 60.0%
GGTTCAAGAGCTGGGAAGGG+TGG + chr4_1:78674915-78674934 Msa0574920:CDS 60.0%
TCAAGAGCTGGGAAGGGTGG+TGG + chr4_1:78674918-78674937 Msa0574920:CDS 60.0%
! GAGCTAGGAAGGGTGGTGGT+TGG + chr4_1:78674958-78674977 Msa0574920:CDS 60.0%
! AAGGGTGGTGGTTGGTCCTC+AGG + chr4_1:78674966-78674985 Msa0574920:CDS 60.0%
AGCTCTTGAGGCTGAGCCTG+AGG - chr4_1:78674985-78675004 None:intergenic 60.0%
CAGGCTCAGCCTCAAGAGCT+AGG + chr4_1:78674985-78675004 Msa0574920:CDS 60.0%
GGTCCTCAGGCTCAAGAGCT+AGG + chr4_1:78675021-78675040 Msa0574920:CDS 60.0%
! AAAGGTGGTGGCTGCTCGTC+AGG + chr4_1:78675044-78675063 Msa0574920:CDS 60.0%
GGCTCAAGAGCTAGGAAGGG+TGG + chr4_1:78675113-78675132 Msa0574920:intron 60.0%
GAGCTAGGAAGGGTGGTGAC+TGG + chr4_1:78675120-78675139 Msa0574920:intron 60.0%
! AAGGGTGGTGACTGGTCCTC+AGG + chr4_1:78675128-78675147 Msa0574920:intron 60.0%
GGTCCTCAGGCTCAAGAGCT+AGG + chr4_1:78675021-78675040 Msa0574920:CDS 60.0%
GGCTCAAGAGCTAGGAAGGG+TGG + chr4_1:78675113-78675132 Msa0574920:intron 60.0%
AGCATGTGGAGCAGCCACCA+AGG - chr4_1:78675982-78676001 None:intergenic 60.0%
AAGGGTGGTTGCTGCTCCAC+AGG + chr4_1:78676019-78676038 Msa0574920:intron 60.0%
! AAGGGTGGTGGCTTGTCCTC+AGG + chr4_1:78676061-78676080 Msa0574920:CDS 60.0%
GGCTCAAGAGCTAGGAAGGG+TGG + chr4_1:78675113-78675132 Msa0574920:intron 60.0%
!! GAGCTAGGAATGGTGGTGGC+TGG + chr4_1:78676131-78676150 Msa0574920:CDS 60.0%
GGTCCTCAGGCTCAAGAGCT+AGG + chr4_1:78675021-78675040 Msa0574920:CDS 60.0%
GGCTCAAGAGCTAGGAAGGG+TGG + chr4_1:78675113-78675132 Msa0574920:intron 60.0%
! AAGCTAGGAAGGGTGGTGGC+TGG + chr4_1:78676053-78676072 Msa0574920:CDS 60.0%
AAGCTAGGAAGGGGGGTGAC+TGG + chr4_1:78676287-78676306 Msa0574920:CDS 60.0%
AGCTCTTGAGCCTGAGCCTG+AGG - chr4_1:78676314-78676333 None:intergenic 60.0%
CAGGCTCAGGCTCAAGAGCT+AGG + chr4_1:78676314-78676333 Msa0574920:CDS 60.0%
GGCTCAAGAGCTAGGAAGGG+TGG + chr4_1:78675113-78675132 Msa0574920:intron 60.0%
! AAGGGTGGTGGCTACTCCAC+AGG + chr4_1:78676337-78676356 Msa0574920:CDS 60.0%
AGCTCTTGAGGCTGAGCCTG+TGG - chr4_1:78674985-78675004 None:intergenic 60.0%
CAGGCTCAGCCTCAAGAGCT+AGG + chr4_1:78674985-78675004 Msa0574920:CDS 60.0%
! GAGCTAGGAAGGATGGCGGC+TGG + chr4_1:78675000-78675019 Msa0574920:CDS 65.0%
! AAGGATGGCGGCTGGTCCTC+AGG + chr4_1:78675008-78675027 Msa0574920:CDS 65.0%
! GAGCTAGGAAGGGTGGTGGC+TGG + chr4_1:78675078-78675097 Msa0574920:intron 65.0%
! GGTGGCTGGTCCTCAAGCTC+AGG + chr4_1:78675092-78675111 Msa0574920:intron 65.0%
! GAGCTAGGAAGGGTGGTGGC+TGG + chr4_1:78675078-78675097 Msa0574920:intron 65.0%
! AAGGGTGGTGGCTGGTCCTC+AGG + chr4_1:78674930-78674949 Msa0574920:CDS 65.0%
! AAGGGGGGTGACTGGTCCTC+AGG + chr4_1:78676295-78676314 Msa0574920:CDS 65.0%
! GGTGACTGGTCCTCAGGCTC+AGG + chr4_1:78675134-78675153 Msa0574920:intron 65.0%
! GAGCTGGGAAGGGTGGTGGC+TGG + chr4_1:78674922-78674941 Msa0574920:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 78672718 78676424 78672718 ID=Msa0574920;Name=Msa0574920
chr4_1 mRNA 78672718 78676424 78672718 ID=Msa0574920-mRNA-1;Parent=Msa0574920;Name=Msa0574920-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|6|0|597
chr4_1 exon 78672718 78672832 78672718 ID=Msa0574920-mRNA-1:exon:27882;Parent=Msa0574920-mRNA-1
chr4_1 exon 78672936 78673085 78672936 ID=Msa0574920-mRNA-1:exon:27883;Parent=Msa0574920-mRNA-1
chr4_1 exon 78673186 78673578 78673186 ID=Msa0574920-mRNA-1:exon:27884;Parent=Msa0574920-mRNA-1
chr4_1 exon 78673842 78673918 78673842 ID=Msa0574920-mRNA-1:exon:27885;Parent=Msa0574920-mRNA-1
chr4_1 exon 78674418 78675092 78674418 ID=Msa0574920-mRNA-1:exon:27886;Parent=Msa0574920-mRNA-1
chr4_1 exon 78676041 78676424 78676041 ID=Msa0574920-mRNA-1:exon:27887;Parent=Msa0574920-mRNA-1
chr4_1 CDS 78672718 78672832 78672718 ID=Msa0574920-mRNA-1:cds;Parent=Msa0574920-mRNA-1
chr4_1 CDS 78672936 78673085 78672936 ID=Msa0574920-mRNA-1:cds;Parent=Msa0574920-mRNA-1
chr4_1 CDS 78673186 78673578 78673186 ID=Msa0574920-mRNA-1:cds;Parent=Msa0574920-mRNA-1
chr4_1 CDS 78673842 78673918 78673842 ID=Msa0574920-mRNA-1:cds;Parent=Msa0574920-mRNA-1
chr4_1 CDS 78674418 78675092 78674418 ID=Msa0574920-mRNA-1:cds;Parent=Msa0574920-mRNA-1
chr4_1 CDS 78676041 78676424 78676041 ID=Msa0574920-mRNA-1:cds;Parent=Msa0574920-mRNA-1
Gene Sequence

>Msa0574920

ATGGATTTTTCCTTTGGGAATGAGTTTCCAGCCAATGTTAAAGTTCTTGTGATTGATCATGATATCGATCTTCTCAATGCTATTGAGAAAACATGGTCTCAATTCAATTACCAAGTTACTACATGTTCGACAGTTTCTTCAGCCTTGAATTTGATAGCACAAAAGGTGCATTTTGATTTGGTACTACTTGAAGCTGAAATGCCGGACATGGATTCATTTGATTTCTTGCAAAAAATTACACAACAAGTCGATATTCCTGTCATTATGACGATGTGTTCTGAAGGATCAACAAATGGAATAATGAAGGCAATTGAAAATGGAGCTTGTGACTGTTTTGTCAAGCCATTCACTGAAAATCAAGTAAAGTATATGTGGCACCATGCTGTTAGGAAAATGATGAAAGGAAATAAAAAACAAAAAATCAATGAGCAATTGGGGATTGAAGGTAGCCAAATAAGGGCAAGTGATGATTCAAATCTACGCTTAAACGATGTACCATCGGGAAAAGGTGACGAAGATATACCCGAACCACCCCGGACAAAGAAGACAAAGAAGAGAAAGAAGACGAAGAAGACGAAGAAGGAGCGGGTTGTATGGTCTTTAGAATTACATGAGAAATTCACGAAGGCTGTTAAAGAACTTGATGCTTCCACTTCCAAGGCGGTACCAAAAACAATTCTTGAACATATGAAGGTGCCTAGACTTACAAGGGAGCAGGTAGCTAGTCATCTTCAGAAGTATAGACTGTATTTAAATAAACATCAACAAGAACAGGAGCAAGCTCTCATGGTTGTGGAATCCAACAGTTCACATGCTGCTGTATTGAAATCATCACAGTGGTCTCACAATTCTCATGTTGCAGAACAACAATATCCAATGGCATATGGTTGCAGTTCTCAACAAGTTCCCAGAAAATTGATACCAAGGCATTTTCCTCATCAGCCCAACACGAACCTGCATCATGGATATGCAACATGGGAGCAGCAATTTCCAAGTGAATATTATATAACTGATCATGATCATGCAGTTGGTCTTGGAAACTTGATGGCGAATAATAGTAATGCATTGCCTCAGCAACAAGAACATCATAATCCACAACAATCACCAATGCATGTTCCTCAGATGAATAATGCAGTCAATGATGTTGTACCGAGTGTGGACAACATCGTGGAAGTGAATAATACTGTAACAGATTTCGGTGAAGCTACAATGCAAGTGGAGGTTGGTCCTCAGGTTCAAGAGCTGGGAAGGGTGGTGGCTGGTCCTCAAGATCAAGAGCTAGGAAGGGTGGTGGTTGGTCCTCAGGCTCAGCCTCAAGAGCTAGGAAGGATGGCGGCTGGTCCTCAGGCTCAAGAGCTAGGAAAGGTGGTGGCTGCTCGTCAGGCTCAACATCAAGAGCTAGGAAGGGTGGCTCAACCTCAAAAGCTAGGAAGGGTGGTGGCTTGTCCTCAGGCTCAAGAGCTAGGAAGGGTGGTGGCTGGTCCTCAAGCTCAGCCTCAAGAGCTAGGAATGGTGGTGGCTGGTTCTCAGACTCAAAAGCTAAGAAGGGTGGTGGCTGGTCCTCAGGCTCAAGAGCTAGGAAGGGTGGCTGCTGCTCCACATGCTCAACTTAAAAAGCTAGGAAGGGTGGTGGCTGGTCCCCAAGCTCAGCCTCAAAAGCTAGGAAGGGGGGTGACTGGTCCTCAGGCTCAGGCTCAAGAGCTAGGAAGGGTGGTGGCTACTCCACAGGCTCAGCCTCAAGAGCTAGGAAGGGGAAAGAGGTATAAGAAGCCTAACACAAGATATACTAATTGA
Protein sequence

>Msa0574920

MDFSFGNEFPANVKVLVIDHDIDLLNAIEKTWSQFNYQVTTCSTVSSALNLIAQKVHFDLVLLEAEMPDMDSFDFLQKITQQVDIPVIMTMCSEGSTNGIMKAIENGACDCFVKPFTENQVKYMWHHAVRKMMKGNKKQKINEQLGIEGSQIRASDDSNLRLNDVPSGKGDEDIPEPPRTKKTKKRKKTKKTKKERVVWSLELHEKFTKAVKELDASTSKAVPKTILEHMKVPRLTREQVASHLQKYRLYLNKHQQEQEQALMVVESNSSHAAVLKSSQWSHNSHVAEQQYPMAYGCSSQQVPRKLIPRHFPHQPNTNLHHGYATWEQQFPSEYYITDHDHAVGLGNLMANNSNALPQQQEHHNPQQSPMHVPQMNNAVNDVVPSVDNIVEVNNTVTDFGEATMQVEVGPQVQELGRVVAGPQDQELGRVVVGPQAQPQELGRMAAGPQAQELGKVVAARQAQHQELGRVAQPQKLGRVVACPQAQELGRVVAGPQAQPQELGMVVAGSQTQKLRRVVAGPQAQELGRVAAAPHAQLKKLGRVVAGPQAQPQKLGRGVTGPQAQAQELGRVVATPQAQPQELGRGKRYKKPNTRYTN*