AlfalfaGEDB | Msa0575140

M. sativa cultivar zhongmu-4 / Msa0575140

KEGG: -
GO: -
PFAM: PF04640.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575140	XP_003630992.1	97.510	241	6	0	1	241	1	241	1.63e-175	492

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575140	sp\|Q1G3Q4\|RITF1_ARATH	33.793	145	74	3	15	158	8	131	1.06e-19	88.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575140	G7LBI1	97.510	241	6	0	1	241	1	241	7.80e-176	492

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0575140	TF	PLATZ

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575140	MtrunA17_Chr8g0392151	97.510	241	6	0	1	241	1	241	1.50e-179	492
Msa0575140	MtrunA17_Chr1g0161601	46.809	94	49	1	14	107	49	141	4.19e-25	96.7
Msa0575140	MtrunA17_Chr4g0065041	33.793	145	74	3	15	158	10	133	4.89e-21	88.6
Msa0575140	MtrunA17_Chr2g0297251	32.738	168	88	5	15	181	39	182	1.61e-20	87.4
Msa0575140	MtrunA17_Chr7g0230511	30.345	145	78	4	15	158	11	133	4.19e-20	85.9
Msa0575140	MtrunA17_Chr1g0179781	35.374	147	71	6	15	158	9	134	4.10e-19	82.4
Msa0575140	MtrunA17_Chr5g0411151	35.616	146	71	5	15	158	37	161	2.06e-17	78.6
Msa0575140	MtrunA17_Chr7g0265291	31.792	173	92	6	15	182	9	160	3.25e-17	77.4
Msa0575140	MtrunA17_Chr4g0040071	34.932	146	72	5	15	158	17	141	5.87e-17	77.0
Msa0575140	MtrunA17_Chr8g0366581	33.951	162	82	6	1	158	19	159	1.46e-16	76.3

Showing 1 to 10 of 17 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575140	AT2G01818.1	43.421	152	66	4	15	161	13	149	7.00e-36	127
Msa0575140	AT3G60670.1	33.333	147	76	3	15	160	9	134	3.41e-22	92.0
Msa0575140	AT2G12646.1	33.793	145	74	3	15	158	8	131	1.08e-20	88.2
Msa0575140	AT2G12646.2	33.793	145	74	3	15	158	8	131	1.08e-20	88.2
Msa0575140	AT2G12646.3	33.793	145	74	3	15	158	5	128	1.13e-20	88.2
Msa0575140	AT1G21000.1	36.735	147	70	5	15	159	18	143	1.38e-18	82.4
Msa0575140	AT1G21000.2	36.735	147	70	5	15	159	15	140	1.40e-18	82.0
Msa0575140	AT1G43000.2	30.769	234	123	11	15	237	18	223	5.82e-18	80.1
Msa0575140	AT1G43000.1	30.769	234	123	11	15	237	11	216	7.58e-18	79.7
Msa0575140	AT4G17900.1	32.515	163	86	5	1	159	20	162	9.72e-18	79.7

Showing 1 to 10 of 23 entries

Previous1 2 3Next

Find 69 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAGACAGGCCTCTG+AGG	0.661748	4_1:-78926109	None:intergenic
AAACCCAATATGGGGTATAA+TGG	0.373437	4_1:-78926392	None:intergenic
AAAGACAGGCCTCTGAGGAG+TGG	0.638363	4_1:-78926104	None:intergenic
AACTCCATTATACCCCATAT+TGG	0.300205	4_1:+78926388	Msa0575140:three_prime_UTR
AAGCTCATTCTATTCATAGA+AGG	0.351713	4_1:+78925104	Msa0575140:CDS
AATCAAAGGAAAAGAAATAA+AGG	0.369890	4_1:-78926299	None:intergenic
ACAACTTCAACCCGCCCACA+TGG	0.636500	4_1:-78926055	None:intergenic
ACACAAGCAAGTAGAAAATG+CGG	0.685653	4_1:-78924423	None:intergenic
ACTATTCGTATCAAAGTCTT+AGG	0.272266	4_1:-78926481	None:intergenic
ACTCCATTATACCCCATATT+GGG	0.359414	4_1:+78926389	Msa0575140:three_prime_UTR

Showing 1 to 10 of 69 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAAAAAGAGAGAATGTGAAA+AGG	-	chr4_1:78924373-78924392	None:intergenic	30.0%
TAAGAATCCATGGAAAAAAC+AGG	-	chr4_1:78924494-78924513	None:intergenic	30.0%
AACGAAATCAGAATCAGAAT+AGG	-	chr4_1:78924535-78924554	None:intergenic	30.0%
GAAATTTGCATGTGAAGATT+TGG	+	chr4_1:78924734-78924753	Msa0575140:intron	30.0%
CAAAAGAAAGGAATAGAGAT+TGG	+	chr4_1:78924963-78924982	Msa0575140:CDS	30.0%
AAGCTCATTCTATTCATAGA+AGG	+	chr4_1:78925104-78925123	Msa0575140:CDS	30.0%
GATTTACAGATATTCCTATC+AGG	+	chr4_1:78925132-78925151	Msa0575140:CDS	30.0%
GATAGACTTTAATGATCTGA+TGG	+	chr4_1:78925340-78925359	Msa0575140:intron	30.0%
TCAATAGGTTCAACCATTAA+TGG	-	chr4_1:78925372-78925391	None:intergenic	30.0%
AACAAACAATGACAGTACAA+AGG	-	chr4_1:78925479-78925498	None:intergenic	30.0%

Showing 1 to 10 of 256 entries

Previous1 2 3 4 5…26Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	78924348	78926687	78924348	ID=Msa0575140;Name=Msa0575140
chr4_1	mRNA	78924348	78926687	78924348	ID=Msa0575140-mRNA-1;Parent=Msa0575140;Name=Msa0575140-mRNA-1;_AED=0.07;_eAED=0.07;_QI=119\|1\|1\|1\|0.75\|0.6\|5\|518\|241
chr4_1	exon	78924348	78924469	78924348	ID=Msa0575140-mRNA-1:exon:28046;Parent=Msa0575140-mRNA-1
chr4_1	exon	78924944	78925207	78924944	ID=Msa0575140-mRNA-1:exon:28047;Parent=Msa0575140-mRNA-1
chr4_1	exon	78925599	78925802	78925599	ID=Msa0575140-mRNA-1:exon:28048;Parent=Msa0575140-mRNA-1
chr4_1	exon	78925887	78926616	78925887	ID=Msa0575140-mRNA-1:exon:28049;Parent=Msa0575140-mRNA-1
chr4_1	exon	78926645	78926687	78926645	ID=Msa0575140-mRNA-1:exon:28050;Parent=Msa0575140-mRNA-1
chr4_1	five_prime_UTR	78924348	78924466	78924348	ID=Msa0575140-mRNA-1:five_prime_utr;Parent=Msa0575140-mRNA-1
chr4_1	CDS	78924467	78924469	78924467	ID=Msa0575140-mRNA-1:cds;Parent=Msa0575140-mRNA-1
chr4_1	CDS	78924944	78925207	78924944	ID=Msa0575140-mRNA-1:cds;Parent=Msa0575140-mRNA-1
chr4_1	CDS	78925599	78925802	78925599	ID=Msa0575140-mRNA-1:cds;Parent=Msa0575140-mRNA-1
chr4_1	CDS	78925887	78926141	78925887	ID=Msa0575140-mRNA-1:cds;Parent=Msa0575140-mRNA-1
chr4_1	three_prime_UTR	78926142	78926616	78926142	ID=Msa0575140-mRNA-1:three_prime_utr;Parent=Msa0575140-mRNA-1
chr4_1	three_prime_UTR	78926645	78926687	78926645	ID=Msa0575140-mRNA-1:three_prime_utr;Parent=Msa0575140-mRNA-1

Gene Sequence

>Msa0575140

ATGGTGGGGAAGGATCAATCACCAAAAGAAAGGAATAGAGATTGGATTAGAGCTCTTATGAATAGTAGCTCTGGCTATTGTGATGATCATCGCGATCTTCGATCTAATGAGAAGAATACTTTCTGTGTAGATTGTGCTGTTAGATTCTGTAGGCACTGTAAAGAAGCTCATTCTATTCATAGAAGGTTTCAGATTTACAGATATTCCTATCAGGATGTTTTCCGCCATTCTGAGCTGCAGAAGCACTTTGACTGCTCAAATATTCAGACTTACATATCGAATAAAGATAGGATTGTGCATCTCAAACCTCGGCCTCCGATCTATAAGTCTAAAGTTGGTGATCAATGCCCTGAATCAAAATCCAAAGAAAGCAACTTATCAGCTAGATTTAAGTCAGGAGGCAGTACATGTGAAGAATGTGGGAAACACTTACAAGATGAGCATAGTCGCTGGTGCTCAATTATATGCAAGATAGGGGAGCCTCAAAGCCAAGGTCCAAATCATCACTCAAAAAGAAGTTTAGTTGAATCTTTCAACCAAAGTGGTAGATGCATCATCACTCCGAAAACCGAAGCTATTGACTTTACTATGACTGATAACCTTAATTCGGAACCGGAATCATCTATTTCTGAAGCTGAGCCATGTGGGCGGGTTGAAGTTGTGAATTTCAGAAAGCGCCCGAGAAAAACCACTCCTCAGAGGCCTGTCTTTGTTTTCGTTTCTTAG

Protein sequence

>Msa0575140

MVGKDQSPKERNRDWIRALMNSSSGYCDDHRDLRSNEKNTFCVDCAVRFCRHCKEAHSIHRRFQIYRYSYQDVFRHSELQKHFDCSNIQTYISNKDRIVHLKPRPPIYKSKVGDQCPESKSKESNLSARFKSGGSTCEECGKHLQDEHSRWCSIICKIGEPQSQGPNHHSKRSLVESFNQSGRCIITPKTEAIDFTMTDNLNSEPESSISEAEPCGRVEVVNFRKRPRKTTPQRPVFVFVS*