Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575180 | BAA76425.1 | 67.708 | 96 | 31 | 0 | 6 | 101 | 35 | 130 | 2.66e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575180 | sp|Q8H1F0|BZP29_ARATH | 59.000 | 100 | 41 | 0 | 2 | 101 | 345 | 444 | 6.98e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575180 | Q9SXT8 | 67.708 | 96 | 31 | 0 | 6 | 101 | 35 | 130 | 1.27e-31 | 119 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0575180 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575180 | MtrunA17_Chr4g0036071 | 72.941 | 85 | 23 | 0 | 17 | 101 | 326 | 410 | 3.29e-30 | 113 |
| Msa0575180 | MtrunA17_Chr2g0329551 | 63.158 | 76 | 28 | 0 | 29 | 104 | 199 | 274 | 5.48e-23 | 92.8 |
| Msa0575180 | MtrunA17_Chr6g0463571 | 67.143 | 70 | 23 | 0 | 35 | 104 | 135 | 204 | 1.10e-21 | 88.2 |
| Msa0575180 | MtrunA17_Chr5g0432701 | 68.116 | 69 | 22 | 0 | 36 | 104 | 144 | 212 | 4.97e-21 | 87.0 |
| Msa0575180 | MtrunA17_Chr3g0107491 | 67.647 | 68 | 22 | 0 | 34 | 101 | 160 | 227 | 8.23e-21 | 86.7 |
| Msa0575180 | MtrunA17_Chr2g0306581 | 79.592 | 49 | 10 | 0 | 39 | 87 | 1 | 49 | 1.52e-19 | 78.6 |
| Msa0575180 | MtrunA17_Chr3g0128781 | 60.563 | 71 | 28 | 0 | 34 | 104 | 91 | 161 | 5.97e-19 | 80.9 |
| Msa0575180 | MtrunA17_Chr1g0156051 | 70.270 | 74 | 22 | 0 | 29 | 102 | 365 | 438 | 6.74e-17 | 75.9 |
| Msa0575180 | MtrunA17_Chr2g0325131 | 61.538 | 52 | 20 | 0 | 49 | 100 | 189 | 240 | 3.99e-13 | 65.1 |
| Msa0575180 | MtrunA17_Chr2g0316551 | 60.377 | 53 | 21 | 0 | 48 | 100 | 205 | 257 | 5.26e-13 | 64.7 |
| Msa0575180 | MtrunA17_Chr4g0040891 | 59.615 | 52 | 21 | 0 | 49 | 100 | 192 | 243 | 3.70e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575180 | AT4G38900.2 | 59.000 | 100 | 41 | 0 | 2 | 101 | 345 | 444 | 7.09e-28 | 107 |
| Msa0575180 | AT4G38900.3 | 59.000 | 100 | 41 | 0 | 2 | 101 | 345 | 444 | 7.09e-28 | 107 |
| Msa0575180 | AT2G21230.3 | 71.622 | 74 | 21 | 0 | 28 | 101 | 347 | 420 | 1.07e-25 | 101 |
| Msa0575180 | AT2G21230.4 | 71.622 | 74 | 21 | 0 | 28 | 101 | 347 | 420 | 1.11e-25 | 101 |
| Msa0575180 | AT2G21230.1 | 71.622 | 74 | 21 | 0 | 28 | 101 | 347 | 420 | 1.11e-25 | 101 |
| Msa0575180 | AT4G38900.1 | 55.660 | 106 | 41 | 1 | 2 | 101 | 345 | 450 | 1.26e-25 | 101 |
| Msa0575180 | AT2G21230.2 | 63.218 | 87 | 32 | 0 | 15 | 101 | 334 | 420 | 2.11e-25 | 100 |
| Msa0575180 | AT1G06850.2 | 66.667 | 72 | 24 | 0 | 34 | 105 | 131 | 202 | 1.89e-23 | 91.7 |
| Msa0575180 | AT2G40620.1 | 58.621 | 87 | 29 | 1 | 18 | 104 | 122 | 201 | 2.57e-21 | 88.2 |
| Msa0575180 | AT1G06070.1 | 66.667 | 69 | 23 | 0 | 36 | 104 | 195 | 263 | 3.08e-21 | 88.6 |
| Msa0575180 | AT1G06850.1 | 66.197 | 71 | 24 | 0 | 34 | 104 | 131 | 201 | 4.54e-21 | 87.0 |
| Msa0575180 | AT1G43700.1 | 63.636 | 66 | 24 | 0 | 39 | 104 | 182 | 247 | 8.73e-21 | 86.7 |
| Msa0575180 | AT2G31370.5 | 54.082 | 98 | 41 | 1 | 11 | 104 | 157 | 254 | 9.01e-21 | 86.7 |
| Msa0575180 | AT2G31370.2 | 54.082 | 98 | 41 | 1 | 11 | 104 | 157 | 254 | 1.21e-20 | 86.7 |
| Msa0575180 | AT2G31370.4 | 54.082 | 98 | 41 | 1 | 11 | 104 | 157 | 254 | 1.21e-20 | 86.7 |
| Msa0575180 | AT2G31370.1 | 54.082 | 98 | 41 | 1 | 11 | 104 | 157 | 254 | 1.21e-20 | 86.7 |
| Msa0575180 | AT2G31370.7 | 54.082 | 98 | 41 | 1 | 11 | 104 | 157 | 254 | 1.21e-20 | 86.7 |
| Msa0575180 | AT2G31370.3 | 54.082 | 98 | 41 | 1 | 11 | 104 | 157 | 254 | 1.21e-20 | 86.7 |
| Msa0575180 | AT2G31370.6 | 54.082 | 98 | 41 | 1 | 11 | 104 | 157 | 254 | 1.21e-20 | 86.7 |
| Msa0575180 | AT3G58120.2 | 64.000 | 50 | 18 | 0 | 51 | 100 | 202 | 251 | 6.19e-13 | 64.3 |
| Msa0575180 | AT3G58120.1 | 64.000 | 50 | 18 | 0 | 51 | 100 | 202 | 251 | 9.33e-13 | 64.3 |
| Msa0575180 | AT2G42380.5 | 62.000 | 50 | 19 | 0 | 51 | 100 | 186 | 235 | 2.62e-12 | 62.8 |
| Msa0575180 | AT2G42380.2 | 62.000 | 50 | 19 | 0 | 51 | 100 | 186 | 235 | 3.90e-12 | 62.4 |
Find 71 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCTAATATCTCTGAATTT+TGG | 0.061804 | 4_1:-78950074 | None:intergenic |
| ACTGAAGCCACTACACTTTC+TGG | 0.213718 | 4_1:+78952553 | Msa0575180:CDS |
| GACAATTATTCACAGTAAAA+TGG | 0.243954 | 4_1:+78954377 | Msa0575180:CDS |
| TTCGGAATTGAAGAAAATTA+TGG | 0.288273 | 4_1:+78952299 | Msa0575180:CDS |
| ATTGTTGATAGAAGGAATTT+TGG | 0.290416 | 4_1:-78950023 | None:intergenic |
| AATTGATGTGGGGTGTAATT+AGG | 0.304492 | 4_1:-78950139 | None:intergenic |
| TGGACAACTTACTTTGTTGC+AGG | 0.307186 | 4_1:+78952573 | Msa0575180:CDS |
| ATTCTTCCATTGTTGATAGA+AGG | 0.318947 | 4_1:-78950031 | None:intergenic |
| AGCTTACCCTTCTATCTTCC+AGG | 0.320309 | 4_1:-78950852 | None:intergenic |
| CACTGAAATGAAGGATTAAT+AGG | 0.321457 | 4_1:-78949954 | None:intergenic |
| TGTTTGCATGAGATCATTCT+TGG | 0.338536 | 4_1:+78954416 | Msa0575180:exon |
| TTATCCGTTGTGTCGTCTTC+AGG | 0.343717 | 4_1:+78950449 | Msa0575180:five_prime_UTR |
| ATGGTTACTTTAACAAACTA+TGG | 0.350253 | 4_1:-78954490 | None:intergenic |
| CAGAAACAGTACCTTATGTT+TGG | 0.360845 | 4_1:-78950162 | None:intergenic |
| GGATCAAAGAGCGATCAATT+TGG | 0.380084 | 4_1:+78954538 | Msa0575180:three_prime_UTR |
| TTGCTAACCTGGAAGATAGA+AGG | 0.399917 | 4_1:+78950845 | Msa0575180:CDS |
| CAGTTTGGTGGTGTATGAAT+AGG | 0.401258 | 4_1:-78949791 | None:intergenic |
| ATCTACAGATACCGCAGAAT+TGG | 0.415201 | 4_1:-78950106 | None:intergenic |
| TGATGATGGGGTTGCTAACC+TGG | 0.430377 | 4_1:+78950834 | Msa0575180:CDS |
| GCTCAAGATGCAATACATTT+CGG | 0.437102 | 4_1:+78952501 | Msa0575180:CDS |
| GTGTTACAATATTATGGTCC+TGG | 0.440651 | 4_1:-78954693 | None:intergenic |
| CACAGAGCCTTTACATGTGC+CGG | 0.447228 | 4_1:+78950413 | Msa0575180:intron |
| ACAAAGTCATAAATACAGTT+TGG | 0.458891 | 4_1:-78949806 | None:intergenic |
| CAACACCTCTTAGCCCGCTT+CGG | 0.460625 | 4_1:-78952357 | None:intergenic |
| CTTATGTTTGGAATTGATGT+GGG | 0.467627 | 4_1:-78950150 | None:intergenic |
| TAGCACTTGTTCCAGTGCCA+TGG | 0.468140 | 4_1:-78950785 | None:intergenic |
| CCACATCAATTCCAAACATA+AGG | 0.469646 | 4_1:+78950151 | Msa0575180:five_prime_UTR |
| ACTCATGCCGGCACATGTAA+AGG | 0.475614 | 4_1:-78950420 | None:intergenic |
| AGCACTTGTTCCAGTGCCAT+GGG | 0.478408 | 4_1:-78950784 | None:intergenic |
| GAAAGTTGACGAGATTGTTA+TGG | 0.480250 | 4_1:+78952329 | Msa0575180:CDS |
| CATCTTTGAAGCTGCATGAA+GGG | 0.494452 | 4_1:-78954344 | None:intergenic |
| TCCTTCTTCTCATCTTCACC+AGG | 0.494836 | 4_1:+78949903 | Msa0575180:five_prime_UTR |
| GAATAAAATTAAACGTGAAG+TGG | 0.508574 | 4_1:-78949831 | None:intergenic |
| AGCGAAGATGAAGTTGATGA+TGG | 0.508679 | 4_1:+78950820 | Msa0575180:CDS |
| GAAGACACACACTGAAATGA+AGG | 0.518553 | 4_1:-78949963 | None:intergenic |
| TCATCTTTGAAGCTGCATGA+AGG | 0.520555 | 4_1:-78954345 | None:intergenic |
| ACGGGTCATATACCTGCATA+TGG | 0.524734 | 4_1:-78949758 | None:intergenic |
| GTTGATGAAGCCCATGGCAC+TGG | 0.525777 | 4_1:+78950774 | Msa0575180:intron |
| TTAGACTGAGAAGAATGCTT+CGG | 0.526884 | 4_1:+78952281 | Msa0575180:intron |
| GTTTGCATGAGATCATTCTT+GGG | 0.528909 | 4_1:+78954417 | Msa0575180:exon |
| GCCTGGTGAAGATGAGAAGA+AGG | 0.530562 | 4_1:-78949904 | None:intergenic |
| CTGATCCGAAGCGGGCTAAG+AGG | 0.536785 | 4_1:+78952352 | Msa0575180:CDS |
| TTGAAGTAATAGCAATTGCC+TGG | 0.537981 | 4_1:-78949921 | None:intergenic |
| ACAACTTACTTTGTTGCAGG+TGG | 0.544855 | 4_1:+78952576 | Msa0575180:CDS |
| CAGTAAAATGGTTCATCTCA+AGG | 0.548479 | 4_1:+78954389 | Msa0575180:CDS |
| CCTTATGTTTGGAATTGATG+TGG | 0.551186 | 4_1:-78950151 | None:intergenic |
| GCGAAGATGAAGTTGATGAT+GGG | 0.560328 | 4_1:+78950821 | Msa0575180:CDS |
| AAAATTCCTTCTATCAACAA+TGG | 0.560899 | 4_1:+78950025 | Msa0575180:five_prime_UTR |
| TGTTATGGCTGATCCGAAGC+GGG | 0.561676 | 4_1:+78952344 | Msa0575180:CDS |
| ATATTATGGTCCTGGTCACA+TGG | 0.566341 | 4_1:-78954685 | None:intergenic |
| CAACGTAATCCACCATATGC+AGG | 0.566356 | 4_1:+78949746 | Msa0575180:five_prime_UTR |
| CAAATTTGGATATAGCATGC+AGG | 0.576993 | 4_1:+78954467 | Msa0575180:three_prime_UTR |
| CAACTTACTTTGTTGCAGGT+GGG | 0.580671 | 4_1:+78952577 | Msa0575180:CDS |
| CGCTATTACTGCCAATTCTG+CGG | 0.581521 | 4_1:+78950095 | Msa0575180:five_prime_UTR |
| CATTTCGGAGCTAGAACACA+AGG | 0.586933 | 4_1:+78952516 | Msa0575180:CDS |
| TGCTAACCTGGAAGATAGAA+GGG | 0.589442 | 4_1:+78950846 | Msa0575180:CDS |
| AAGTCATAAATACAGTTTGG+TGG | 0.607867 | 4_1:-78949803 | None:intergenic |
| ATGAATAGGTAGAGTCTGCA+CGG | 0.611183 | 4_1:-78949777 | None:intergenic |
| GATCCTTCATCAGTTCAACA+TGG | 0.613238 | 4_1:-78954520 | None:intergenic |
| GTTCCATGTTGAACTGATGA+AGG | 0.622209 | 4_1:+78954517 | Msa0575180:three_prime_UTR |
| TTATGTTTGGAATTGATGTG+GGG | 0.625617 | 4_1:-78950149 | None:intergenic |
| TGAATAGGTAGAGTCTGCAC+GGG | 0.628866 | 4_1:-78949776 | None:intergenic |
| GGTCATATACCTGCATATGG+TGG | 0.636829 | 4_1:-78949755 | None:intergenic |
| TTGTTATGGCTGATCCGAAG+CGG | 0.656660 | 4_1:+78952343 | Msa0575180:CDS |
| GGATAATCTGATACTCATGC+CGG | 0.661307 | 4_1:-78950432 | None:intergenic |
| CGAAGATGAAGTTGATGATG+GGG | 0.674501 | 4_1:+78950822 | Msa0575180:CDS |
| CTGCATATGGTGGATTACGT+TGG | 0.675130 | 4_1:-78949745 | None:intergenic |
| GTATTGCATCTTGAGCACAT+TGG | 0.680261 | 4_1:-78952494 | None:intergenic |
| AGTTCAACATGGAACTCACA+TGG | 0.683804 | 4_1:-78954509 | None:intergenic |
| AAGTTGTCCAGAAAGTGTAG+TGG | 0.688059 | 4_1:-78952560 | None:intergenic |
| AGTACCTGAAGACGACACAA+CGG | 0.736355 | 4_1:-78950453 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACATCTATTTAAATATTA+CGG | - | chr4_1:78951037-78951056 | None:intergenic | 10.0% |
| !!! | ATATGTTATTAAATTTTGAT+TGG | + | chr4_1:78951480-78951499 | Msa0575180:intron | 10.0% |
| !!! | AATAAATGATTTTTTAGTTA+TGG | + | chr4_1:78952088-78952107 | Msa0575180:intron | 10.0% |
| !!! | ATAAATGATTTTTTAGTTAT+GGG | + | chr4_1:78952089-78952108 | Msa0575180:intron | 10.0% |
| !!! | TTTTGGATTTTTTTTTTTTT+TGG | + | chr4_1:78953094-78953113 | Msa0575180:intron | 10.0% |
| !!! | TTATATTTTTATGATTTGTT+TGG | + | chr4_1:78954148-78954167 | Msa0575180:intron | 10.0% |
| !!! | AGTTTTTTTAATGTTTTTTT+AGG | + | chr4_1:78954271-78954290 | Msa0575180:intron | 10.0% |
| !!! | TTTATTTTGATTAACAAATT+TGG | + | chr4_1:78954453-78954472 | Msa0575180:three_prime_UTR | 10.0% |
| !!! | AATTTGAGATTTTCATTATT+GGG | - | chr4_1:78950271-78950290 | None:intergenic | 15.0% |
| !!! | AAATTTGAGATTTTCATTAT+TGG | - | chr4_1:78950272-78950291 | None:intergenic | 15.0% |
| !! | ATTGAAAACAAAACAAAAAA+AGG | - | chr4_1:78950692-78950711 | None:intergenic | 15.0% |
| !! | ACAATTCAAATAAAGATAAA+TGG | - | chr4_1:78951713-78951732 | None:intergenic | 15.0% |
| !!! | TTTATCTTTATTTGAATTGT+TGG | + | chr4_1:78951713-78951732 | Msa0575180:intron | 15.0% |
| !! | GTTATATTTATTGTATATTG+TGG | + | chr4_1:78951972-78951991 | Msa0575180:intron | 15.0% |
| !!! | AGATATTTGTTAATAGAAAT+GGG | - | chr4_1:78952756-78952775 | None:intergenic | 15.0% |
| !!! | TAGATATTTGTTAATAGAAA+TGG | - | chr4_1:78952757-78952776 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTTTTTGGTGA+AGG | + | chr4_1:78953100-78953119 | Msa0575180:intron | 15.0% |
| !!! | TTTTAGTATATTTTTTCGTT+TGG | + | chr4_1:78953228-78953247 | Msa0575180:intron | 15.0% |
| !!! | TTTTTCTTTCATAAAAAGAA+TGG | + | chr4_1:78953383-78953402 | Msa0575180:intron | 15.0% |
| !! | AAATAAATAAGCAATATGAA+GGG | - | chr4_1:78953543-78953562 | None:intergenic | 15.0% |
| !! | AAAATAAATAAGCAATATGA+AGG | - | chr4_1:78953544-78953563 | None:intergenic | 15.0% |
| !! | ATTATTAAAGAAGGATAAAA+TGG | - | chr4_1:78954006-78954025 | None:intergenic | 15.0% |
| !!! | TTTTTTTAGGTTTCTAATTA+GGG | + | chr4_1:78954284-78954303 | Msa0575180:intron | 15.0% |
| !!! | ATTTGAGATTTTCATTATTG+GGG | - | chr4_1:78950270-78950289 | None:intergenic | 20.0% |
| !! | CTCAATCTAATAATATTTCA+CGG | - | chr4_1:78950650-78950669 | None:intergenic | 20.0% |
| !! | AAAACAAAACAAAAAAAGGA+TGG | - | chr4_1:78950688-78950707 | None:intergenic | 20.0% |
| !! | ATAAGACGATAAAAATACTA+AGG | - | chr4_1:78951747-78951766 | None:intergenic | 20.0% |
| !! | AAAACATATGTGATTGTATT+AGG | + | chr4_1:78951872-78951891 | Msa0575180:intron | 20.0% |
| !! | TAAAAGTTATAATTGTCTCT+AGG | + | chr4_1:78951899-78951918 | Msa0575180:intron | 20.0% |
| !! | ATTCTCAAAGTAACATATTA+TGG | - | chr4_1:78952071-78952090 | None:intergenic | 20.0% |
| !! | TTTAGTTAGTAATGTCAATA+TGG | + | chr4_1:78952399-78952418 | Msa0575180:intron | 20.0% |
| !!! | ATTTGACTTGGATATTTTTT+TGG | + | chr4_1:78952429-78952448 | Msa0575180:intron | 20.0% |
| !!! | TTTGACTTGGATATTTTTTT+GGG | + | chr4_1:78952430-78952449 | Msa0575180:intron | 20.0% |
| !!! | ATATTTTTTTGGGTTATTTC+AGG | + | chr4_1:78952440-78952459 | Msa0575180:intron | 20.0% |
| !!! | ATTGTTTCTTATATCTGAAA+CGG | + | chr4_1:78952818-78952837 | Msa0575180:intron | 20.0% |
| !! | ATAGACATCTATACTATTAT+TGG | + | chr4_1:78952939-78952958 | Msa0575180:intron | 20.0% |
| !! | TAGACATCTATACTATTATT+GGG | + | chr4_1:78952940-78952959 | Msa0575180:intron | 20.0% |
| !! | AAAATTAAGCTAAAATGAGA+AGG | + | chr4_1:78952993-78953012 | Msa0575180:intron | 20.0% |
| !! | AAATTAAGCTAAAATGAGAA+GGG | + | chr4_1:78952994-78953013 | Msa0575180:intron | 20.0% |
| !! | GAGATAAATTACATAAACAA+TGG | - | chr4_1:78953031-78953050 | None:intergenic | 20.0% |
| !! | ATATTAACATACAAAGATGA+AGG | - | chr4_1:78953946-78953965 | None:intergenic | 20.0% |
| !!! | GTTTTTTTAGGTTTCTAATT+AGG | + | chr4_1:78954283-78954302 | Msa0575180:intron | 20.0% |
| !!! | GATTTACTTAGTTTTTATTC+TGG | + | chr4_1:78954648-78954667 | Msa0575180:three_prime_UTR | 20.0% |
| ! | ACAAAGTCATAAATACAGTT+TGG | - | chr4_1:78949809-78949828 | None:intergenic | 25.0% |
| ! | GAATAAAATTAAACGTGAAG+TGG | - | chr4_1:78949834-78949853 | None:intergenic | 25.0% |
| !!! | CTGATTTTTTGTTTGAACTT+GGG | - | chr4_1:78949879-78949898 | None:intergenic | 25.0% |
| !!! | TCTGATTTTTTGTTTGAACT+TGG | - | chr4_1:78949880-78949899 | None:intergenic | 25.0% |
| !!! | TTGTTGATAGAAGGAATTTT+GGG | - | chr4_1:78950025-78950044 | None:intergenic | 25.0% |
| !!! | ATTGTTGATAGAAGGAATTT+TGG | - | chr4_1:78950026-78950045 | None:intergenic | 25.0% |
| ! | AAAATTCCTTCTATCAACAA+TGG | + | chr4_1:78950025-78950044 | Msa0575180:five_prime_UTR | 25.0% |
| !! | TCTAATATCTCTGAATTTTG+GGG | - | chr4_1:78950075-78950094 | None:intergenic | 25.0% |
| !! | GTCTAATATCTCTGAATTTT+GGG | - | chr4_1:78950076-78950095 | None:intergenic | 25.0% |
| !! | TGATGTAATAGAGTATCATT+TGG | - | chr4_1:78950219-78950238 | None:intergenic | 25.0% |
| ! | AACAGAAGAATATGTACTAT+GGG | - | chr4_1:78950301-78950320 | None:intergenic | 25.0% |
| ! | AAACAGAAGAATATGTACTA+TGG | - | chr4_1:78950302-78950321 | None:intergenic | 25.0% |
| !! | TTTTCCATTATTATTGTCTC+CGG | + | chr4_1:78950350-78950369 | Msa0575180:intron | 25.0% |
| ! | ATAAATCAAATGAGCATATC+AGG | - | chr4_1:78950725-78950744 | None:intergenic | 25.0% |
| !!! | CAAATTCTGTTTTTCTTCTA+TGG | + | chr4_1:78950887-78950906 | Msa0575180:intron | 25.0% |
| !!! | AGATTTTAGATTGTTACTTC+TGG | + | chr4_1:78950932-78950951 | Msa0575180:intron | 25.0% |
| !!! | GATTTTAGATTGTTACTTCT+GGG | + | chr4_1:78950933-78950952 | Msa0575180:intron | 25.0% |
| !! | CATGTTTTATAGAATGAACA+TGG | + | chr4_1:78950956-78950975 | Msa0575180:intron | 25.0% |
| ! | AGAAAAAGATCAAAATGAAC+AGG | - | chr4_1:78951300-78951319 | None:intergenic | 25.0% |
| ! | ACAAATAGAAAGAGGTAATT+TGG | + | chr4_1:78951369-78951388 | Msa0575180:intron | 25.0% |
| !!! | AGGTAATTTGGATTTTTAGT+AGG | + | chr4_1:78951381-78951400 | Msa0575180:intron | 25.0% |
| !!! | TTTGGATTTTTAGTAGGAAT+TGG | + | chr4_1:78951387-78951406 | Msa0575180:intron | 25.0% |
| !! | TGTTTGATGTCCATTTTATT+TGG | + | chr4_1:78951632-78951651 | Msa0575180:intron | 25.0% |
| ! | GAAAAAGAAGCCAAATAAAA+TGG | - | chr4_1:78951645-78951664 | None:intergenic | 25.0% |
| !!! | AAGAAATCGTTTGATTTGAA+TGG | + | chr4_1:78951821-78951840 | Msa0575180:intron | 25.0% |
| !! | TTATAATTGTCTCTAGGAAT+TGG | + | chr4_1:78951905-78951924 | Msa0575180:intron | 25.0% |
| ! | AGGTTAATTACAAAACTAAC+AGG | - | chr4_1:78952017-78952036 | None:intergenic | 25.0% |
| ! | TTTACTTCTCTTATGTTACT+TGG | + | chr4_1:78952152-78952171 | Msa0575180:intron | 25.0% |
| ! | TTCGGAATTGAAGAAAATTA+TGG | + | chr4_1:78952299-78952318 | Msa0575180:CDS | 25.0% |
| ! | TTCAAATAATCCTCAAAACA+TGG | - | chr4_1:78952626-78952645 | None:intergenic | 25.0% |
| ! | TTCATTGAACATTGCAAATT+TGG | - | chr4_1:78952667-78952686 | None:intergenic | 25.0% |
| ! | TGTAAAACTACTCAAATCAT+AGG | - | chr4_1:78952694-78952713 | None:intergenic | 25.0% |
| ! | TCTTATTGAACATTTAGTGA+AGG | + | chr4_1:78952721-78952740 | Msa0575180:intron | 25.0% |
| !!! | AAATATGCTAAAAGCATTCA+TGG | - | chr4_1:78952784-78952803 | None:intergenic | 25.0% |
| !!! | AGTTTAGTTTTTAACACAGA+AGG | + | chr4_1:78952859-78952878 | Msa0575180:intron | 25.0% |
| ! | ATCTCATGTTAAGAACTAAA+CGG | - | chr4_1:78952894-78952913 | None:intergenic | 25.0% |
| ! | AATAGTATAGATGTCTATCA+AGG | - | chr4_1:78952937-78952956 | None:intergenic | 25.0% |
| ! | ACAATGTCAAATTGATGTAT+AGG | - | chr4_1:78952971-78952990 | None:intergenic | 25.0% |
| ! | AATTAAGCTAAAATGAGAAG+GGG | + | chr4_1:78952995-78953014 | Msa0575180:intron | 25.0% |
| !! | TACAAATGAATCAGATTTTG+AGG | + | chr4_1:78953414-78953433 | Msa0575180:intron | 25.0% |
| ! | TAAACCATCAACAATATGAA+GGG | - | chr4_1:78953583-78953602 | None:intergenic | 25.0% |
| !!! | TTTTTTCCCAAGTTTTGTTT+GGG | + | chr4_1:78953765-78953784 | Msa0575180:intron | 25.0% |
| !!! | TTTTTTTTCCCGACAATAAT+TGG | + | chr4_1:78953795-78953814 | Msa0575180:intron | 25.0% |
| !!! | CAATTTGATTTGGATTTTAG+AGG | - | chr4_1:78954058-78954077 | None:intergenic | 25.0% |
| ! | AAGTTTAATGTTCAACTTGA+TGG | - | chr4_1:78954102-78954121 | None:intergenic | 25.0% |
| !!! | ATCAAGTTGAACATTAAACT+TGG | + | chr4_1:78954101-78954120 | Msa0575180:intron | 25.0% |
| ! | GACAATTATTCACAGTAAAA+TGG | + | chr4_1:78954377-78954396 | Msa0575180:CDS | 25.0% |
| !! | ATGGTTACTTTAACAAACTA+TGG | - | chr4_1:78954493-78954512 | None:intergenic | 25.0% |
| AAGTCATAAATACAGTTTGG+TGG | - | chr4_1:78949806-78949825 | None:intergenic | 30.0% | |
| CACTGAAATGAAGGATTAAT+AGG | - | chr4_1:78949957-78949976 | None:intergenic | 30.0% | |
| !! | TGTTGATAGAAGGAATTTTG+GGG | - | chr4_1:78950024-78950043 | None:intergenic | 30.0% |
| ! | ATTCTTCCATTGTTGATAGA+AGG | - | chr4_1:78950034-78950053 | None:intergenic | 30.0% |
| ! | CGTCTAATATCTCTGAATTT+TGG | - | chr4_1:78950077-78950096 | None:intergenic | 30.0% |
| !!! | GGGTGTAATTAGGTTTTTTT+TGG | - | chr4_1:78950132-78950151 | None:intergenic | 30.0% |
| ! | TTATGTTTGGAATTGATGTG+GGG | - | chr4_1:78950152-78950171 | None:intergenic | 30.0% |
| ! | CTTATGTTTGGAATTGATGT+GGG | - | chr4_1:78950153-78950172 | None:intergenic | 30.0% |
| ACCTGTATCGTAATGAATTT+CGG | + | chr4_1:78950374-78950393 | Msa0575180:intron | 30.0% | |
| ! | AATTTCTAGATGTCGTGATT+CGG | - | chr4_1:78950540-78950559 | None:intergenic | 30.0% |
| CGGTGATTACAGAATTTAAA+AGG | - | chr4_1:78950630-78950649 | None:intergenic | 30.0% | |
| ! | GAATTGGTGAAAGTTTTCTA+GGG | + | chr4_1:78951403-78951422 | Msa0575180:intron | 30.0% |
| !! | ATTTGATTTGCAGGTATGAT+TGG | + | chr4_1:78951568-78951587 | Msa0575180:intron | 30.0% |
| AAACACAAAGGTTCAAAAGT+TGG | - | chr4_1:78951608-78951627 | None:intergenic | 30.0% | |
| ATCAAACACAACAAACACAA+AGG | - | chr4_1:78951620-78951639 | None:intergenic | 30.0% | |
| TGTCTTATGCTAACATAAGA+TGG | - | chr4_1:78951786-78951805 | None:intergenic | 30.0% | |
| ACAAAGAAAGTAACACTTTG+AGG | - | chr4_1:78951954-78951973 | None:intergenic | 30.0% | |
| GTTAGTAATGTCAATATGGA+TGG | + | chr4_1:78952403-78952422 | Msa0575180:intron | 30.0% | |
| ! | TATGGATGGTTAATTTGACT+TGG | + | chr4_1:78952417-78952436 | Msa0575180:intron | 30.0% |
| !! | ATTTCAGGATTTTGAGAAAC+AGG | + | chr4_1:78952455-78952474 | Msa0575180:intron | 30.0% |
| ! | TTATATCTGAAACGGACAAA+AGG | + | chr4_1:78952826-78952845 | Msa0575180:intron | 30.0% |
| !!! | TATAGTGCTGATACAAGTTT+TGG | + | chr4_1:78953077-78953096 | Msa0575180:intron | 30.0% |
| ATTATTGTCATTGCAAAGTG+AGG | - | chr4_1:78953132-78953151 | None:intergenic | 30.0% | |
| AAGAGAGTAATAACTTTAGC+TGG | - | chr4_1:78953296-78953315 | None:intergenic | 30.0% | |
| AAAGACACTACTTGTGAAAA+TGG | - | chr4_1:78953330-78953349 | None:intergenic | 30.0% | |
| CTTCATTATCTCCATATCAA+AGG | - | chr4_1:78953467-78953486 | None:intergenic | 30.0% | |
| CTAAACCATCAACAATATGA+AGG | - | chr4_1:78953584-78953603 | None:intergenic | 30.0% | |
| !!! | GTTTTTTCCCAAGTTTTGTT+TGG | + | chr4_1:78953764-78953783 | Msa0575180:intron | 30.0% |
| ! | AAGAAGTGCAAAAACTGAAA+TGG | - | chr4_1:78953903-78953922 | None:intergenic | 30.0% |
| ATACAAAGATGAAGGAATGA+AGG | - | chr4_1:78953938-78953957 | None:intergenic | 30.0% | |
| GTAGCTGTCATTATTAAAGA+AGG | - | chr4_1:78954015-78954034 | None:intergenic | 30.0% | |
| AAGGTAGTGTCAATTTGATT+TGG | - | chr4_1:78954068-78954087 | None:intergenic | 30.0% | |
| GATTTCTTTCTCATATTGCT+TGG | + | chr4_1:78954123-78954142 | Msa0575180:intron | 30.0% | |
| ! | AGAAGGAATTCTCTATTTCT+AGG | - | chr4_1:78954195-78954214 | None:intergenic | 30.0% |
| ACTTGGGAAAAATGATGCTT+TGG | - | chr4_1:78949863-78949882 | None:intergenic | 35.0% | |
| TTGAAGTAATAGCAATTGCC+TGG | - | chr4_1:78949924-78949943 | None:intergenic | 35.0% | |
| !! | GTTGATAGAAGGAATTTTGG+GGG | - | chr4_1:78950023-78950042 | None:intergenic | 35.0% |
| !!! | ATTTTGGGGTTTCATAGCTT+TGG | - | chr4_1:78950061-78950080 | None:intergenic | 35.0% |
| AATTGATGTGGGGTGTAATT+AGG | - | chr4_1:78950142-78950161 | None:intergenic | 35.0% | |
| ! | CCTTATGTTTGGAATTGATG+TGG | - | chr4_1:78950154-78950173 | None:intergenic | 35.0% |
| CCACATCAATTCCAAACATA+AGG | + | chr4_1:78950151-78950170 | Msa0575180:five_prime_UTR | 35.0% | |
| CAGAAACAGTACCTTATGTT+TGG | - | chr4_1:78950165-78950184 | None:intergenic | 35.0% | |
| ! | GAGATTTTCATTATTGGGGT+CGG | - | chr4_1:78950266-78950285 | None:intergenic | 35.0% |
| ATTCATTACGATACAGGTAC+CGG | - | chr4_1:78950372-78950391 | None:intergenic | 35.0% | |
| TCCGAAATTCATTACGATAC+AGG | - | chr4_1:78950378-78950397 | None:intergenic | 35.0% | |
| ACACACAACAAAATGAGCAA+TGG | - | chr4_1:78950756-78950775 | None:intergenic | 35.0% | |
| ATAGAATGAACATGGACATG+TGG | + | chr4_1:78950964-78950983 | Msa0575180:intron | 35.0% | |
| TAGAATGAACATGGACATGT+GGG | + | chr4_1:78950965-78950984 | Msa0575180:intron | 35.0% | |
| ACTTGCAGTTTACTGATAAG+TGG | + | chr4_1:78950992-78951011 | Msa0575180:intron | 35.0% | |
| CTTGCAGTTTACTGATAAGT+GGG | + | chr4_1:78950993-78951012 | Msa0575180:intron | 35.0% | |
| AACAACCTTGAACAGTAGAT+AGG | + | chr4_1:78951066-78951085 | Msa0575180:intron | 35.0% | |
| CAATACCTATCTACTGTTCA+AGG | - | chr4_1:78951074-78951093 | None:intergenic | 35.0% | |
| TATTGTAGCCGCTCTTTAAT+CGG | + | chr4_1:78951089-78951108 | Msa0575180:intron | 35.0% | |
| TGATGCAAGTAAAAAAGGCA+TGG | - | chr4_1:78951177-78951196 | None:intergenic | 35.0% | |
| !!! | ATGCCTTTTTTACTTGCATC+AGG | + | chr4_1:78951176-78951195 | Msa0575180:intron | 35.0% |
| !!! | TGCCTTTTTTACTTGCATCA+GGG | + | chr4_1:78951177-78951196 | Msa0575180:intron | 35.0% |
| TCACATATAGTATAGCTCTC+CGG | + | chr4_1:78951222-78951241 | Msa0575180:intron | 35.0% | |
| CGACATCTACAAATAGAAAG+AGG | + | chr4_1:78951361-78951380 | Msa0575180:intron | 35.0% | |
| ! | GGAATTGGTGAAAGTTTTCT+AGG | + | chr4_1:78951402-78951421 | Msa0575180:intron | 35.0% |
| GTATATTGTGGTTGTTTGTG+CGG | + | chr4_1:78951984-78952003 | Msa0575180:intron | 35.0% | |
| AACCTGAGTTCATGCTTTAA+AGG | + | chr4_1:78952032-78952051 | Msa0575180:intron | 35.0% | |
| TTAGACTGAGAAGAATGCTT+CGG | + | chr4_1:78952217-78952236 | Msa0575180:intron | 35.0% | |
| TTAGACTGAGAAGAATGCTT+CGG | + | chr4_1:78952217-78952236 | Msa0575180:intron | 35.0% | |
| GAAAGTTGACGAGATTGTTA+TGG | + | chr4_1:78952329-78952348 | Msa0575180:CDS | 35.0% | |
| !! | GATTTTGAGAAACAGGCAAT+CGG | + | chr4_1:78952462-78952481 | Msa0575180:CDS | 35.0% |
| GCTCAAGATGCAATACATTT+CGG | + | chr4_1:78952501-78952520 | Msa0575180:CDS | 35.0% | |
| ! | GTTTGTGAAACCATGTTTTG+AGG | + | chr4_1:78952613-78952632 | Msa0575180:intron | 35.0% |
| GTGTTCATGTTCCTTTGATA+TGG | + | chr4_1:78953453-78953472 | Msa0575180:intron | 35.0% | |
| CTTTCCCTTCATATTGTTGA+TGG | + | chr4_1:78953576-78953595 | Msa0575180:intron | 35.0% | |
| TTAGCAAACACATGTATGAC+AGG | + | chr4_1:78953600-78953619 | Msa0575180:intron | 35.0% | |
| CTGTTCGATTCAGTTTAGAA+TGG | + | chr4_1:78953738-78953757 | Msa0575180:intron | 35.0% | |
| CTTAGACCCAAACAAAACTT+GGG | - | chr4_1:78953774-78953793 | None:intergenic | 35.0% | |
| TCGATAGCACCAATTATTGT+CGG | - | chr4_1:78953807-78953826 | None:intergenic | 35.0% | |
| !!! | GTTAGAGCATGTGTTTTTTG+TGG | + | chr4_1:78953845-78953864 | Msa0575180:intron | 35.0% |
| !!! | AGCATGTGTTTTTTGTGGAT+GGG | + | chr4_1:78953850-78953869 | Msa0575180:intron | 35.0% |
| AAGTGCAAAAACTGAAATGG+TGG | - | chr4_1:78953900-78953919 | None:intergenic | 35.0% | |
| AAAGATGAAGGAATGAAGGA+GGG | - | chr4_1:78953934-78953953 | None:intergenic | 35.0% | |
| !! | GATTTGGATTTTAGAGGTGA+TGG | - | chr4_1:78954052-78954071 | None:intergenic | 35.0% |
| TAAGTGGTAGCAGATGAAAT+TGG | - | chr4_1:78954226-78954245 | None:intergenic | 35.0% | |
| CTAAAAGTTCCCAAACTAAG+TGG | - | chr4_1:78954242-78954261 | None:intergenic | 35.0% | |
| !!! | GTTTTGTTTTTCTCTTGCAG+TGG | + | chr4_1:78954309-78954328 | Msa0575180:intron | 35.0% |
| CAGTAAAATGGTTCATCTCA+AGG | + | chr4_1:78954389-78954408 | Msa0575180:CDS | 35.0% | |
| TGTTTGCATGAGATCATTCT+TGG | + | chr4_1:78954416-78954435 | Msa0575180:exon | 35.0% | |
| GTTTGCATGAGATCATTCTT+GGG | + | chr4_1:78954417-78954436 | Msa0575180:exon | 35.0% | |
| CAAATTTGGATATAGCATGC+AGG | + | chr4_1:78954467-78954486 | Msa0575180:three_prime_UTR | 35.0% | |
| ATGAATAGGTAGAGTCTGCA+CGG | - | chr4_1:78949780-78949799 | None:intergenic | 40.0% | |
| !! | CAGTTTGGTGGTGTATGAAT+AGG | - | chr4_1:78949794-78949813 | None:intergenic | 40.0% |
| GAAGACACACACTGAAATGA+AGG | - | chr4_1:78949966-78949985 | None:intergenic | 40.0% | |
| !! | GAATTTTGGGGGAAATTGAG+GGG | - | chr4_1:78950012-78950031 | None:intergenic | 40.0% |
| !! | GGAATTTTGGGGGAAATTGA+GGG | - | chr4_1:78950013-78950032 | None:intergenic | 40.0% |
| !! | AGGAATTTTGGGGGAAATTG+AGG | - | chr4_1:78950014-78950033 | None:intergenic | 40.0% |
| ATCTACAGATACCGCAGAAT+TGG | - | chr4_1:78950109-78950128 | None:intergenic | 40.0% | |
| ! | GGTACCGGAGACAATAATAA+TGG | - | chr4_1:78950357-78950376 | None:intergenic | 40.0% |
| GGATAATCTGATACTCATGC+CGG | - | chr4_1:78950435-78950454 | None:intergenic | 40.0% | |
| !! | AGCGAAGATGAAGTTGATGA+TGG | + | chr4_1:78950820-78950839 | Msa0575180:CDS | 40.0% |
| !! | GCGAAGATGAAGTTGATGAT+GGG | + | chr4_1:78950821-78950840 | Msa0575180:CDS | 40.0% |
| !! | CGAAGATGAAGTTGATGATG+GGG | + | chr4_1:78950822-78950841 | Msa0575180:CDS | 40.0% |
| TTGCTAACCTGGAAGATAGA+AGG | + | chr4_1:78950845-78950864 | Msa0575180:CDS | 40.0% | |
| TGCTAACCTGGAAGATAGAA+GGG | + | chr4_1:78950846-78950865 | Msa0575180:CDS | 40.0% | |
| AGCCCTGATGCAAGTAAAAA+AGG | - | chr4_1:78951182-78951201 | None:intergenic | 40.0% | |
| TCAACATTGTAGTCAAGAGC+CGG | - | chr4_1:78951244-78951263 | None:intergenic | 40.0% | |
| !! | GTGCTACTGATTTGATTTGC+AGG | + | chr4_1:78951559-78951578 | Msa0575180:intron | 40.0% |
| !! | CTGCTCATTTGTGTTGCTTT+AGG | + | chr4_1:78951675-78951694 | Msa0575180:intron | 40.0% |
| !! | CTCATTTGTGTTGCTTTAGG+AGG | + | chr4_1:78951678-78951697 | Msa0575180:intron | 40.0% |
| !! | CTCCTTTAAAGCATGAACTC+AGG | - | chr4_1:78952037-78952056 | None:intergenic | 40.0% |
| GTATTGCATCTTGAGCACAT+TGG | - | chr4_1:78952497-78952516 | None:intergenic | 40.0% | |
| ! | AAGTTGTCCAGAAAGTGTAG+TGG | - | chr4_1:78952563-78952582 | None:intergenic | 40.0% |
| TGGACAACTTACTTTGTTGC+AGG | + | chr4_1:78952573-78952592 | Msa0575180:CDS | 40.0% | |
| ACAACTTACTTTGTTGCAGG+TGG | + | chr4_1:78952576-78952595 | Msa0575180:CDS | 40.0% | |
| CAACTTACTTTGTTGCAGGT+GGG | + | chr4_1:78952577-78952596 | Msa0575180:CDS | 40.0% | |
| ATTGCAAATTTGGCAGCTCT+TGG | - | chr4_1:78952657-78952676 | None:intergenic | 40.0% | |
| ! | CTCTATCAACTGTCGTTTCA+TGG | + | chr4_1:78953048-78953067 | Msa0575180:intron | 40.0% |
| !!! | GCTGGAGCTGTTTTTACAAT+AGG | - | chr4_1:78953278-78953297 | None:intergenic | 40.0% |
| GACACTACTTGTGAAAATGG+TGG | - | chr4_1:78953327-78953346 | None:intergenic | 40.0% | |
| AAAGGAACATGAACACAGAG+AGG | - | chr4_1:78953449-78953468 | None:intergenic | 40.0% | |
| ATATGAAGGGAAAAATCCCG+TGG | - | chr4_1:78953530-78953549 | None:intergenic | 40.0% | |
| ! | GCTCAAAGGAGTACAAAATC+TGG | - | chr4_1:78953651-78953670 | None:intergenic | 40.0% |
| CATAAGGCAACTACTCTGAA+CGG | - | chr4_1:78953685-78953704 | None:intergenic | 40.0% | |
| GAGTAGTTGCCTTATGTCAA+AGG | + | chr4_1:78953689-78953708 | Msa0575180:intron | 40.0% | |
| ACCTGAACACCTTTGACATA+AGG | - | chr4_1:78953701-78953720 | None:intergenic | 40.0% | |
| !!! | CAAAGGTGTTCAGGTGTTTT+AGG | + | chr4_1:78953706-78953725 | Msa0575180:intron | 40.0% |
| CCTTAGACCCAAACAAAACT+TGG | - | chr4_1:78953775-78953794 | None:intergenic | 40.0% | |
| !!! | CCAAGTTTTGTTTGGGTCTA+AGG | + | chr4_1:78953772-78953791 | Msa0575180:intron | 40.0% |
| CGATAGCACCAATTATTGTC+GGG | - | chr4_1:78953806-78953825 | None:intergenic | 40.0% | |
| !!! | GAGCATGTGTTTTTTGTGGA+TGG | + | chr4_1:78953849-78953868 | Msa0575180:intron | 40.0% |
| !!! | GCATGTGTTTTTTGTGGATG+GGG | + | chr4_1:78953851-78953870 | Msa0575180:intron | 40.0% |
| CAAAGATGAAGGAATGAAGG+AGG | - | chr4_1:78953935-78953954 | None:intergenic | 40.0% | |
| !! | TTAGAGGTGATGGAGAAACA+CGG | - | chr4_1:78954042-78954061 | None:intergenic | 40.0% |
| TGAAATTGGTCACAGTGAGA+AGG | - | chr4_1:78954212-78954231 | None:intergenic | 40.0% | |
| TCATCTGCTACCACTTAGTT+TGG | + | chr4_1:78954229-78954248 | Msa0575180:intron | 40.0% | |
| CATCTGCTACCACTTAGTTT+GGG | + | chr4_1:78954230-78954249 | Msa0575180:intron | 40.0% | |
| !! | CATCTTTGAAGCTGCATGAA+GGG | - | chr4_1:78954347-78954366 | None:intergenic | 40.0% |
| !! | TCATCTTTGAAGCTGCATGA+AGG | - | chr4_1:78954348-78954367 | None:intergenic | 40.0% |
| AGTTCAACATGGAACTCACA+TGG | - | chr4_1:78954512-78954531 | None:intergenic | 40.0% | |
| GTTCCATGTTGAACTGATGA+AGG | + | chr4_1:78954517-78954536 | Msa0575180:three_prime_UTR | 40.0% | |
| GATCCTTCATCAGTTCAACA+TGG | - | chr4_1:78954523-78954542 | None:intergenic | 40.0% | |
| GGATCAAAGAGCGATCAATT+TGG | + | chr4_1:78954538-78954557 | Msa0575180:three_prime_UTR | 40.0% | |
| ! | TGTTCTTTTTCCATGTGACC+AGG | + | chr4_1:78954675-78954694 | Msa0575180:three_prime_UTR | 40.0% |
| !! | CTGCATATGGTGGATTACGT+TGG | - | chr4_1:78949748-78949767 | None:intergenic | 45.0% |
| CAACGTAATCCACCATATGC+AGG | + | chr4_1:78949746-78949765 | Msa0575180:five_prime_UTR | 45.0% | |
| GGTCATATACCTGCATATGG+TGG | - | chr4_1:78949758-78949777 | None:intergenic | 45.0% | |
| ACGGGTCATATACCTGCATA+TGG | - | chr4_1:78949761-78949780 | None:intergenic | 45.0% | |
| TGAATAGGTAGAGTCTGCAC+GGG | - | chr4_1:78949779-78949798 | None:intergenic | 45.0% | |
| TCCTTCTTCTCATCTTCACC+AGG | + | chr4_1:78949903-78949922 | Msa0575180:five_prime_UTR | 45.0% | |
| CGCTATTACTGCCAATTCTG+CGG | + | chr4_1:78950095-78950114 | Msa0575180:five_prime_UTR | 45.0% | |
| GTCGGAAAGCGAAAGAAGAA+GGG | - | chr4_1:78950248-78950267 | None:intergenic | 45.0% | |
| AGGCTCTGTGAAAGTCGAAA+TGG | - | chr4_1:78950403-78950422 | None:intergenic | 45.0% | |
| TTATCCGTTGTGTCGTCTTC+AGG | + | chr4_1:78950449-78950468 | Msa0575180:five_prime_UTR | 45.0% | |
| AGTACCTGAAGACGACACAA+CGG | - | chr4_1:78950456-78950475 | None:intergenic | 45.0% | |
| ! | TTGTGTGTTGATGAAGCCCA+TGG | + | chr4_1:78950768-78950787 | Msa0575180:intron | 45.0% |
| AGCTTACCCTTCTATCTTCC+AGG | - | chr4_1:78950855-78950874 | None:intergenic | 45.0% | |
| CAGTTTACTGATAAGTGGGC+AGG | + | chr4_1:78950997-78951016 | Msa0575180:intron | 45.0% | |
| CTACCACTCCGATTAAAGAG+CGG | - | chr4_1:78951100-78951119 | None:intergenic | 45.0% | |
| ! | CTTTGAGGACCATGTATTGC+AGG | - | chr4_1:78951939-78951958 | None:intergenic | 45.0% |
| AAGAATGCTTCGGAGGAAGA+AGG | + | chr4_1:78952227-78952246 | Msa0575180:intron | 45.0% | |
| TTGTTATGGCTGATCCGAAG+CGG | + | chr4_1:78952343-78952362 | Msa0575180:CDS | 45.0% | |
| CATTTCGGAGCTAGAACACA+AGG | + | chr4_1:78952516-78952535 | Msa0575180:CDS | 45.0% | |
| ACTGAAGCCACTACACTTTC+TGG | + | chr4_1:78952553-78952572 | Msa0575180:CDS | 45.0% | |
| TGCTGCTCTATTAGCTACCA+CGG | + | chr4_1:78953510-78953529 | Msa0575180:intron | 45.0% | |
| ATGACAGGCTGCAATTGCAT+CGG | + | chr4_1:78953615-78953634 | Msa0575180:intron | 45.0% | |
| !! | GCCTTATGTCAAAGGTGTTC+AGG | + | chr4_1:78953697-78953716 | Msa0575180:intron | 45.0% |
| ! | ATCCTTCATCGTTTTCCAGC+AGG | + | chr4_1:78953966-78953985 | Msa0575180:intron | 45.0% |
| TACCTGCTGGAAAACGATGA+AGG | - | chr4_1:78953971-78953990 | None:intergenic | 45.0% | |
| !! | GAGTTCTAAGAAGTACCTGC+TGG | - | chr4_1:78953984-78954003 | None:intergenic | 45.0% |
| !! | CTTGATGGTGACGAAGGTTA+AGG | - | chr4_1:78954087-78954106 | None:intergenic | 45.0% |
| !! | GTTCAACTTGATGGTGACGA+AGG | - | chr4_1:78954093-78954112 | None:intergenic | 45.0% |
| ! | GGTGCTGTAATGACATGTAC+AGG | - | chr4_1:78954174-78954193 | None:intergenic | 45.0% |
| GCCTGGTGAAGATGAGAAGA+AGG | - | chr4_1:78949907-78949926 | None:intergenic | 50.0% | |
| GGTCGGAAAGCGAAAGAAGA+AGG | - | chr4_1:78950249-78950268 | None:intergenic | 50.0% | |
| CACAGAGCCTTTACATGTGC+CGG | + | chr4_1:78950413-78950432 | Msa0575180:intron | 50.0% | |
| ACTCATGCCGGCACATGTAA+AGG | - | chr4_1:78950423-78950442 | None:intergenic | 50.0% | |
| AGCACTTGTTCCAGTGCCAT+GGG | - | chr4_1:78950787-78950806 | None:intergenic | 50.0% | |
| TAGCACTTGTTCCAGTGCCA+TGG | - | chr4_1:78950788-78950807 | None:intergenic | 50.0% | |
| !! | TGATGATGGGGTTGCTAACC+TGG | + | chr4_1:78950834-78950853 | Msa0575180:CDS | 50.0% |
| TAGCCGCTCTTTAATCGGAG+TGG | + | chr4_1:78951094-78951113 | Msa0575180:intron | 50.0% | |
| CGCTCTTTAATCGGAGTGGT+AGG | + | chr4_1:78951098-78951117 | Msa0575180:intron | 50.0% | |
| GAGGACCATGTATTGCAGGT+CGG | - | chr4_1:78951935-78951954 | None:intergenic | 50.0% | |
| GACTGAGAAGAATGCTTCGG+AGG | + | chr4_1:78952220-78952239 | Msa0575180:intron | 50.0% | |
| TGTTATGGCTGATCCGAAGC+GGG | + | chr4_1:78952344-78952363 | Msa0575180:CDS | 50.0% | |
| CAAATTTGGCAGCTCTTGGC+AGG | - | chr4_1:78952653-78952672 | None:intergenic | 50.0% | |
| GGAACATGAACACAGAGAGG+AGG | - | chr4_1:78953446-78953465 | None:intergenic | 50.0% | |
| GCTGCTCTATTAGCTACCAC+GGG | + | chr4_1:78953511-78953530 | Msa0575180:intron | 50.0% | |
| !!! | GTGTTTTTTGTGGATGGGGC+TGG | + | chr4_1:78953855-78953874 | Msa0575180:intron | 50.0% |
| ! | GTTGATGAAGCCCATGGCAC+TGG | + | chr4_1:78950774-78950793 | Msa0575180:intron | 55.0% |
| AGTGGGCAGGTTGCTCAAAC+TGG | + | chr4_1:78951010-78951029 | Msa0575180:intron | 55.0% | |
| TCGGAGTGGTAGGCACAAAC+TGG | + | chr4_1:78951108-78951127 | Msa0575180:intron | 55.0% | |
| GAGAGCCGACCTGCAATACA+TGG | + | chr4_1:78951927-78951946 | Msa0575180:intron | 55.0% | |
| GCTTCGGAGGAAGAAGGATC+TGG | + | chr4_1:78952233-78952252 | Msa0575180:intron | 55.0% | |
| CAACACCTCTTAGCCCGCTT+CGG | - | chr4_1:78952360-78952379 | None:intergenic | 55.0% | |
| CGGCAGCAGTTTCTGCTCAA+AGG | - | chr4_1:78953665-78953684 | None:intergenic | 55.0% | |
| !! | CTGATCCGAAGCGGGCTAAG+AGG | + | chr4_1:78952352-78952371 | Msa0575180:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 78949735 | 78954705 | 78949735 | ID=Msa0575180;Name=Msa0575180 |
| chr4_1 | mRNA | 78949735 | 78954705 | 78949735 | ID=Msa0575180-mRNA-1;Parent=Msa0575180;Name=Msa0575180-mRNA-1;_AED=0.26;_eAED=0.26;_QI=494|0.6|0.66|1|0.4|0.5|6|279|140 |
| chr4_1 | exon | 78949735 | 78950172 | 78949735 | ID=Msa0575180-mRNA-1:exon:28064;Parent=Msa0575180-mRNA-1 |
| chr4_1 | exon | 78950418 | 78950470 | 78950418 | ID=Msa0575180-mRNA-1:exon:28065;Parent=Msa0575180-mRNA-1 |
| chr4_1 | exon | 78950784 | 78950867 | 78950784 | ID=Msa0575180-mRNA-1:exon:28066;Parent=Msa0575180-mRNA-1 |
| chr4_1 | exon | 78952285 | 78952373 | 78952285 | ID=Msa0575180-mRNA-1:exon:28067;Parent=Msa0575180-mRNA-1 |
| chr4_1 | exon | 78952462 | 78952616 | 78952462 | ID=Msa0575180-mRNA-1:exon:28068;Parent=Msa0575180-mRNA-1 |
| chr4_1 | exon | 78954329 | 78954705 | 78954329 | ID=Msa0575180-mRNA-1:exon:28069;Parent=Msa0575180-mRNA-1 |
| chr4_1 | five_prime_UTR | 78949735 | 78950172 | 78949735 | ID=Msa0575180-mRNA-1:five_prime_utr;Parent=Msa0575180-mRNA-1 |
| chr4_1 | five_prime_UTR | 78950418 | 78950470 | 78950418 | ID=Msa0575180-mRNA-1:five_prime_utr;Parent=Msa0575180-mRNA-1 |
| chr4_1 | five_prime_UTR | 78950784 | 78950786 | 78950784 | ID=Msa0575180-mRNA-1:five_prime_utr;Parent=Msa0575180-mRNA-1 |
| chr4_1 | CDS | 78950787 | 78950867 | 78950787 | ID=Msa0575180-mRNA-1:cds;Parent=Msa0575180-mRNA-1 |
| chr4_1 | CDS | 78952285 | 78952373 | 78952285 | ID=Msa0575180-mRNA-1:cds;Parent=Msa0575180-mRNA-1 |
| chr4_1 | CDS | 78952462 | 78952616 | 78952462 | ID=Msa0575180-mRNA-1:cds;Parent=Msa0575180-mRNA-1 |
| chr4_1 | CDS | 78954329 | 78954426 | 78954329 | ID=Msa0575180-mRNA-1:cds;Parent=Msa0575180-mRNA-1 |
| chr4_1 | three_prime_UTR | 78954427 | 78954705 | 78954427 | ID=Msa0575180-mRNA-1:three_prime_utr;Parent=Msa0575180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
