Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575260 | XP_003631022.1 | 98.128 | 374 | 6 | 1 | 1 | 373 | 1 | 374 | 0.0 | 741 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575260 | sp|Q9C5G0|SUF4_ARATH | 64.083 | 387 | 105 | 13 | 1 | 373 | 1 | 367 | 2.02e-153 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575260 | G7LCD1 | 98.128 | 374 | 6 | 1 | 1 | 373 | 1 | 374 | 0.0 | 741 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0575260 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575260 | MtrunA17_Chr8g0392331 | 98.128 | 374 | 6 | 1 | 1 | 373 | 1 | 374 | 0.0 | 741 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575260 | AT1G30970.1 | 64.083 | 387 | 105 | 13 | 1 | 373 | 1 | 367 | 2.05e-154 | 439 |
| Msa0575260 | AT1G30970.3 | 62.943 | 367 | 102 | 13 | 1 | 353 | 1 | 347 | 2.92e-139 | 402 |
| Msa0575260 | AT1G30970.2 | 58.696 | 322 | 99 | 13 | 66 | 373 | 14 | 315 | 7.75e-101 | 301 |
Find 181 sgRNAs with CRISPR-Local
Find 420 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGCCATTCTTTACTTAAA+TGG | 0.125457 | 4_1:-79087181 | Msa0575260:three_prime_UTR |
| ATTGAAGGACCACCGGTATT+TGG | 0.170439 | 4_1:+79088555 | None:intergenic |
| TTTATTTACATGTCTTGATT+TGG | 0.226989 | 4_1:-79086961 | Msa0575260:three_prime_UTR |
| TTATTTACATGTCTTGATTT+GGG | 0.240531 | 4_1:-79086960 | Msa0575260:three_prime_UTR |
| CAGCCTTTGTTTCCTGTTGT+TGG | 0.240602 | 4_1:-79088917 | Msa0575260:CDS |
| TTCCTTCACCGATCAATTAA+AGG | 0.250588 | 4_1:+79087214 | None:intergenic |
| GGAAACAAAGGCTGTGAAAC+TGG | 0.284002 | 4_1:+79088926 | None:intergenic |
| CGGTGAAGGAACCTTATTAT+TGG | 0.285452 | 4_1:-79087202 | Msa0575260:three_prime_UTR |
| GATATTTGTATTCAAACTTT+AGG | 0.293699 | 4_1:-79087024 | Msa0575260:three_prime_UTR |
| GGAGCTTTGTTTGAGATTAC+TGG | 0.297232 | 4_1:+79088522 | None:intergenic |
| GTTCCTATTGACGCACATTT+AGG | 0.300973 | 4_1:-79088803 | Msa0575260:CDS |
| ACAGCATACATTGGTCGAAT+TGG | 0.303869 | 4_1:+79089324 | None:intergenic |
| ATTTCTGTACTCTCTCTTCC+AGG | 0.309747 | 4_1:+79091169 | None:intergenic |
| AAAGAATGGCACCAATAATA+AGG | 0.323652 | 4_1:+79087191 | None:intergenic |
| TCCACCTTGGCTGTCTTTGA+TGG | 0.324836 | 4_1:+79089426 | None:intergenic |
| AACTCACATTCTTATGCTTC+TGG | 0.326574 | 4_1:-79088579 | Msa0575260:CDS |
| TCTCTTCCAGGTTTCGCATT+TGG | 0.327140 | 4_1:+79091181 | None:intergenic |
| TTGAAGGACCACCGGTATTT+GGG | 0.341503 | 4_1:+79088556 | None:intergenic |
| ACCAGGCCCTCCTAATGCTT+GGG | 0.344462 | 4_1:-79089137 | Msa0575260:CDS |
| CTTATCTATGGCTGCATCAA+TGG | 0.344752 | 4_1:+79087376 | None:intergenic |
| CTCAAGTATCCTCTTATCTA+TGG | 0.345061 | 4_1:+79087364 | None:intergenic |
| ACAAGTAGTTATCAAGCAAT+AGG | 0.347700 | 4_1:-79088764 | Msa0575260:CDS |
| TATGTCCATTCACGTTCTTC+AGG | 0.364615 | 4_1:-79092037 | Msa0575260:CDS |
| GTGCCATTCTTTACTTAAAT+GGG | 0.370620 | 4_1:-79087180 | Msa0575260:three_prime_UTR |
| ATATATACTTTAGGACCATT+TGG | 0.370639 | 4_1:-79086991 | Msa0575260:three_prime_UTR |
| GACATGGGTGCAGCGGAAAA+TGG | 0.372457 | 4_1:+79088866 | None:intergenic |
| TGGAATGGTGCCACCTCCTA+TGG | 0.375927 | 4_1:-79089379 | Msa0575260:CDS |
| ACATTCTGAACAGGAAATAA+TGG | 0.376562 | 4_1:+79089031 | None:intergenic |
| CATGATGATATATATACTTT+AGG | 0.383405 | 4_1:-79087000 | Msa0575260:three_prime_UTR |
| TGGCTTTCTGATGCTGAACC+AGG | 0.384449 | 4_1:+79092109 | None:intergenic |
| AACTGTTTCAATTCCTCCTC+CGG | 0.388888 | 4_1:-79089071 | Msa0575260:CDS |
| ATAAAGATGCCGCTAGGGTT+TGG | 0.389749 | 4_1:+79092219 | None:intergenic |
| AATGTCTTTAACAAAATATC+AGG | 0.390175 | 4_1:-79088334 | Msa0575260:CDS |
| TACCAGGCCCTCCTAATGCT+TGG | 0.392438 | 4_1:-79089138 | Msa0575260:CDS |
| CAGCATACATTGGTCGAATT+GGG | 0.393166 | 4_1:+79089325 | None:intergenic |
| AGTACAGAAATTGAAATATA+CGG | 0.394552 | 4_1:-79091157 | Msa0575260:CDS |
| ATCCCATCAACCCCATTTGC+AGG | 0.396537 | 4_1:-79089402 | Msa0575260:CDS |
| CTAACGAAGTCTACCTGGTT+TGG | 0.400133 | 4_1:-79088482 | Msa0575260:CDS |
| GGCACCATTCCACCTGCAAA+TGG | 0.405114 | 4_1:+79089390 | None:intergenic |
| CCACCTGCAAATGGGGTTGA+TGG | 0.408036 | 4_1:+79089399 | None:intergenic |
| GAATTGAAACAGTTGGAGGC+TGG | 0.414100 | 4_1:+79089080 | None:intergenic |
| CATAAGAAGCTTTCCACTGC+TGG | 0.419731 | 4_1:-79092063 | Msa0575260:CDS |
| GGAACAACTCCCCAAGCATT+AGG | 0.420757 | 4_1:+79089127 | None:intergenic |
| TATCAAGCAATAGGGATTCC+AGG | 0.422402 | 4_1:-79088755 | Msa0575260:intron |
| CCCCTGTGCTGCTGCTGCGA+TGG | 0.422893 | 4_1:+79092264 | None:intergenic |
| GGTGTAGATGAAGGCAGTCC+AGG | 0.433874 | 4_1:+79088953 | None:intergenic |
| TAACGAAGTCTACCTGGTTT+GGG | 0.436179 | 4_1:-79088481 | Msa0575260:CDS |
| CTCCATCGCAGCAGCAGCAC+AGG | 0.436889 | 4_1:-79092266 | Msa0575260:five_prime_UTR |
| ATGTGGTTATTTCCAACAAC+AGG | 0.437841 | 4_1:+79088905 | None:intergenic |
| AATACCGGTGGTCCTTCAAT+TGG | 0.438291 | 4_1:-79088552 | Msa0575260:CDS |
| ATGCCTAAATGTGCGTCAAT+AGG | 0.440753 | 4_1:+79088800 | None:intergenic |
| GGTTGATCGTGGAGGATATC+CGG | 0.443716 | 4_1:+79089353 | None:intergenic |
| GATGTCTTGGCTGCTCATTA+TGG | 0.444172 | 4_1:-79091115 | Msa0575260:CDS |
| TTGCCCATTTAAGTAAAGAA+TGG | 0.444789 | 4_1:+79087177 | None:intergenic |
| GCACCATTCCACCTGCAAAT+GGG | 0.451889 | 4_1:+79089391 | None:intergenic |
| GGGGATTCCGTCAGATGTCT+TGG | 0.461428 | 4_1:-79091128 | Msa0575260:CDS |
| ATCTTTATCTGAATTTCGAT+GGG | 0.461714 | 4_1:-79092204 | Msa0575260:exon |
| CCGATCAATTAAAGGAATGT+TGG | 0.462195 | 4_1:+79087222 | None:intergenic |
| GGAGGCCTCACATTCTGAAC+AGG | 0.464202 | 4_1:+79089022 | None:intergenic |
| CATCTTTATCTGAATTTCGA+TGG | 0.466378 | 4_1:-79092205 | Msa0575260:exon |
| CCAACATTCCTTTAATTGAT+CGG | 0.467421 | 4_1:-79087222 | Msa0575260:three_prime_UTR |
| AATTGAAATATACGGAATGC+AGG | 0.468518 | 4_1:-79091149 | Msa0575260:CDS |
| TAAATAAAGATTACACCAAA+TGG | 0.471089 | 4_1:+79086976 | None:intergenic |
| CAGGGGTGGTTGAACGGAAT+CGG | 0.475006 | 4_1:-79092247 | Msa0575260:five_prime_UTR |
| AATTGAAACAGTTGGAGGCT+GGG | 0.475617 | 4_1:+79089081 | None:intergenic |
| TATGCTTCTGGCCCAAATAC+CGG | 0.477985 | 4_1:-79088567 | Msa0575260:CDS |
| AGTGTACCATCAATAGCTCC+TGG | 0.479304 | 4_1:-79088839 | Msa0575260:CDS |
| GAAGAAGCGCGTTGCTTCAA+AGG | 0.480211 | 4_1:-79092175 | Msa0575260:CDS |
| TTCCTTTAATTGATCGGTGA+AGG | 0.482781 | 4_1:-79087216 | Msa0575260:three_prime_UTR |
| TTGATGCAGCCATAGATAAG+AGG | 0.483071 | 4_1:-79087373 | Msa0575260:CDS |
| AACATGACACTTAAAGTGCT+TGG | 0.485491 | 4_1:+79092089 | None:intergenic |
| CCCCAAGCATTAGGAGGGCC+TGG | 0.491220 | 4_1:+79089136 | None:intergenic |
| TTTGTCTGTGTGCTAAGCAT+AGG | 0.491482 | 4_1:+79086828 | None:intergenic |
| GGAAACCATGGCTGAGGTCG+AGG | 0.492794 | 4_1:+79089103 | None:intergenic |
| CTGTGCTGCTGCTGCGATGG+AGG | 0.493192 | 4_1:+79092267 | None:intergenic |
| TTGTTTGAGATTACTGGTGG+AGG | 0.495717 | 4_1:+79088528 | None:intergenic |
| GAAAGCCCAGGAGCTATTGA+TGG | 0.496123 | 4_1:+79088833 | None:intergenic |
| CAAGTAGTTATCAAGCAATA+GGG | 0.496128 | 4_1:-79088763 | Msa0575260:CDS |
| TCAATGATATGAACTGAAAA+CGG | 0.499361 | 4_1:-79087274 | Msa0575260:three_prime_UTR |
| ATTAAAGGAATGTTGGAAGC+TGG | 0.499843 | 4_1:+79087229 | None:intergenic |
| AGATATAATCCTGCTGTACC+AGG | 0.505163 | 4_1:-79089154 | Msa0575260:CDS |
| TTAGGAGGGCCTGGTACAGC+AGG | 0.509971 | 4_1:+79089145 | None:intergenic |
| AGGGTGCCAAATGCGAAACC+TGG | 0.511393 | 4_1:-79091187 | Msa0575260:CDS |
| GGCTGGGGAAACCATGGCTG+AGG | 0.511844 | 4_1:+79089097 | None:intergenic |
| CAATCTCAGATTACTCCTCC+TGG | 0.513612 | 4_1:-79088971 | Msa0575260:CDS |
| GTAATCTGAGATTGTAGTGC+AGG | 0.514880 | 4_1:+79088980 | None:intergenic |
| ATTTGACGACGAGAAGATCC+TGG | 0.521456 | 4_1:-79092127 | Msa0575260:CDS |
| CACCATTCCACCTGCAAATG+GGG | 0.522457 | 4_1:+79089392 | None:intergenic |
| ACTGGTGGAGGTCCAATTGA+AGG | 0.524549 | 4_1:+79088540 | None:intergenic |
| TATTTACATGTCTTGATTTG+GGG | 0.525045 | 4_1:-79086959 | Msa0575260:three_prime_UTR |
| GCAGCACAGGGGTGGTTGAA+CGG | 0.525091 | 4_1:-79092253 | Msa0575260:five_prime_UTR |
| AACCAGGTAGACTTCGTTAG+TGG | 0.526452 | 4_1:+79088485 | None:intergenic |
| TTCCACCTCGACCTCAGCCA+TGG | 0.530637 | 4_1:-79089108 | Msa0575260:CDS |
| AACCCCATTTGCAGGTGGAA+TGG | 0.531347 | 4_1:-79089394 | Msa0575260:CDS |
| ATACTTGAGAGCAGGCTAGC+TGG | 0.531564 | 4_1:-79087350 | Msa0575260:CDS |
| GGTTGCTGTGGGTATTGAAC+CGG | 0.533307 | 4_1:+79089052 | None:intergenic |
| AGAAGTTTGAGAAGTGTACA+TGG | 0.535678 | 4_1:+79087297 | None:intergenic |
| GTTTGAATACAAATATCAGC+TGG | 0.538362 | 4_1:+79087030 | None:intergenic |
| CCAGGCCCTCCTAATGCTTG+GGG | 0.544705 | 4_1:-79089136 | Msa0575260:CDS |
| TTCAGATAAAGATGCCGCTA+GGG | 0.545272 | 4_1:+79092214 | None:intergenic |
| ATAAGAGGATACTTGAGAGC+AGG | 0.545989 | 4_1:-79087358 | Msa0575260:CDS |
| TTAGTGGCAGGCTGAGTAGC+GGG | 0.546294 | 4_1:+79088501 | None:intergenic |
| TGCCACTAACGAAGTCTACC+TGG | 0.547063 | 4_1:-79088487 | Msa0575260:CDS |
| GCTGCTCATTATGGAGATGA+AGG | 0.547626 | 4_1:-79091106 | Msa0575260:intron |
| ATTGAAACAGTTGGAGGCTG+GGG | 0.549843 | 4_1:+79089082 | None:intergenic |
| ATCTGACAATATTTGTGCGT+GGG | 0.552656 | 4_1:-79087093 | Msa0575260:three_prime_UTR |
| GCTTTGTTTGAGATTACTGG+TGG | 0.553404 | 4_1:+79088525 | None:intergenic |
| CATTGGTCGAATTGGGCCCA+CGG | 0.553954 | 4_1:+79089332 | None:intergenic |
| AGAAGACGAAGACCTAGGCT+AGG | 0.556402 | 4_1:+79092300 | None:intergenic |
| TGTGGGTATTGAACCGGAGG+AGG | 0.557963 | 4_1:+79089058 | None:intergenic |
| AGGTAGACTTCGTTAGTGGC+AGG | 0.558673 | 4_1:+79088489 | None:intergenic |
| CACCTGCAAATGGGGTTGAT+GGG | 0.560328 | 4_1:+79089400 | None:intergenic |
| ATTTACATGTCTTGATTTGG+GGG | 0.564910 | 4_1:-79086958 | Msa0575260:three_prime_UTR |
| ATTGAAATATACGGAATGCA+GGG | 0.566703 | 4_1:-79091148 | Msa0575260:CDS |
| GGTTGATGGGATGTCCACCT+TGG | 0.568451 | 4_1:+79089413 | None:intergenic |
| GGTTCATGATGAAAGTAGCC+AGG | 0.569158 | 4_1:-79088313 | Msa0575260:intron |
| GGAATGGTGCCACCTCCTAT+GGG | 0.569199 | 4_1:-79089378 | Msa0575260:CDS |
| TCTGAGGAAGAAGGTTGCAA+TGG | 0.570013 | 4_1:-79087129 | Msa0575260:three_prime_UTR |
| ATTCAGATAAAGATGCCGCT+AGG | 0.573127 | 4_1:+79092213 | None:intergenic |
| GGAGGAGGAATTGAAACAGT+TGG | 0.574521 | 4_1:+79089073 | None:intergenic |
| GGATGACGAGGCAATGTCCA+TGG | 0.575495 | 4_1:-79088460 | Msa0575260:intron |
| GTGCCACCTCCTATGGGTAC+CGG | 0.575683 | 4_1:-79089372 | Msa0575260:CDS |
| GAAACAAAGGCTGTGAAACT+GGG | 0.576837 | 4_1:+79088927 | None:intergenic |
| GTGGACCTGAAGAACGTGAA+TGG | 0.577922 | 4_1:+79092032 | None:intergenic |
| TATTTCCTGTTCAGAATGTG+AGG | 0.578258 | 4_1:-79089027 | Msa0575260:CDS |
| ATTGGGCCCACGGTTGATCG+TGG | 0.579337 | 4_1:+79089342 | None:intergenic |
| GAAGACGAAGACCTAGGCTA+GGG | 0.582663 | 4_1:+79092301 | None:intergenic |
| ACTGGGACAGGTGTAGATGA+AGG | 0.584495 | 4_1:+79088944 | None:intergenic |
| ACAACTCCCCAAGCATTAGG+AGG | 0.584661 | 4_1:+79089130 | None:intergenic |
| TTATCTGAATTTCGATGGGG+AGG | 0.585856 | 4_1:-79092200 | Msa0575260:exon |
| GGAGGATATCCGGTACCCAT+AGG | 0.590455 | 4_1:+79089363 | None:intergenic |
| AATGGACATACCACCAGCAG+TGG | 0.591379 | 4_1:+79092050 | None:intergenic |
| TGCTGTGGGTATTGAACCGG+AGG | 0.591412 | 4_1:+79089055 | None:intergenic |
| ACGATTAAGAACCCTAGCCT+AGG | 0.597001 | 4_1:-79092312 | Msa0575260:five_prime_UTR |
| GAAGAAGAAGACGAAGACCT+AGG | 0.598146 | 4_1:+79092295 | None:intergenic |
| GAGCAGGCTAGCTGGTCGCA+TGG | 0.599459 | 4_1:-79087342 | Msa0575260:CDS |
| TTGCCTCGTCATCCCAAACC+AGG | 0.602208 | 4_1:+79088469 | None:intergenic |
| GAAGTAGTTGATGGCAATGG+AGG | 0.606455 | 4_1:+79089004 | None:intergenic |
| TGAGCAGCCAAGACATCTGA+CGG | 0.607744 | 4_1:+79091121 | None:intergenic |
| AGCGCGTTGCTTCAAAGGTG+TGG | 0.608922 | 4_1:-79092170 | Msa0575260:CDS |
| AAGAAGCTTTCCACTGCTGG+TGG | 0.609186 | 4_1:-79092060 | Msa0575260:CDS |
| TCCATCGCAGCAGCAGCACA+GGG | 0.609829 | 4_1:-79092265 | Msa0575260:five_prime_UTR |
| GGAACATTTAAAGAAAGCCC+AGG | 0.610826 | 4_1:+79088821 | None:intergenic |
| AGTGCAGGTGAAGTAGTTGA+TGG | 0.611818 | 4_1:+79088995 | None:intergenic |
| TTTCCAACAACAGGAAACAA+AGG | 0.612122 | 4_1:+79088914 | None:intergenic |
| AAAGGCTGTGAAACTGGGAC+AGG | 0.616328 | 4_1:+79088932 | None:intergenic |
| GGATATCCGGTACCCATAGG+AGG | 0.617032 | 4_1:+79089366 | None:intergenic |
| GTGTACCATCAATAGCTCCT+GGG | 0.617725 | 4_1:-79088838 | Msa0575260:CDS |
| CATCTGACAATATTTGTGCG+TGG | 0.619522 | 4_1:-79087094 | Msa0575260:three_prime_UTR |
| TCGCAGCAGCAGCACAGGGG+TGG | 0.619771 | 4_1:-79092261 | Msa0575260:five_prime_UTR |
| GTTGGAGGCTGGGGAAACCA+TGG | 0.620715 | 4_1:+79089091 | None:intergenic |
| ACTTGAAGACATGGGTGCAG+CGG | 0.621248 | 4_1:+79088859 | None:intergenic |
| AGGTCCAATTGAAGGACCAC+CGG | 0.621456 | 4_1:+79088548 | None:intergenic |
| AACCATGGCTGAGGTCGAGG+TGG | 0.623423 | 4_1:+79089106 | None:intergenic |
| GGAGGAATTGAAACAGTTGG+AGG | 0.628063 | 4_1:+79089076 | None:intergenic |
| GTTAGTGGCAGGCTGAGTAG+CGG | 0.628691 | 4_1:+79088500 | None:intergenic |
| GGAAAATGGTGAACTTTGAG+TGG | 0.629363 | 4_1:+79088880 | None:intergenic |
| GGTGAAGTAGTTGATGGCAA+TGG | 0.630819 | 4_1:+79089001 | None:intergenic |
| TTGAAATATACGGAATGCAG+GGG | 0.631086 | 4_1:-79091147 | Msa0575260:CDS |
| TGATGGTACACTTGAAGACA+TGG | 0.634182 | 4_1:+79088850 | None:intergenic |
| CTACCTGGTTTGGGATGACG+AGG | 0.635306 | 4_1:-79088472 | Msa0575260:CDS |
| ACAGGAAATAATGGTTGCTG+TGG | 0.636390 | 4_1:+79089040 | None:intergenic |
| CCATCAACCCCATTTGCAGG+TGG | 0.645938 | 4_1:-79089399 | Msa0575260:CDS |
| AAATTAAAGAATGTAATGAG+AGG | 0.649036 | 4_1:-79086863 | Msa0575260:three_prime_UTR |
| ATATCCTCCACGATCAACCG+TGG | 0.655774 | 4_1:-79089349 | Msa0575260:CDS |
| TCCATCAAAGACAGCCAAGG+TGG | 0.658500 | 4_1:-79089427 | Msa0575260:CDS |
| TATCCGGTACCCATAGGAGG+TGG | 0.658522 | 4_1:+79089369 | None:intergenic |
| CAACTCCCCAAGCATTAGGA+GGG | 0.662716 | 4_1:+79089131 | None:intergenic |
| TATCCTCCACGATCAACCGT+GGG | 0.663319 | 4_1:-79089348 | Msa0575260:CDS |
| GTAGATGAAGGCAGTCCAGG+AGG | 0.667864 | 4_1:+79088956 | None:intergenic |
| GCTTCTGGCCCAAATACCGG+TGG | 0.670008 | 4_1:-79088564 | Msa0575260:CDS |
| GGGCCCACGGTTGATCGTGG+AGG | 0.671495 | 4_1:+79089345 | None:intergenic |
| TGTTCCATCAAAGACAGCCA+AGG | 0.680961 | 4_1:-79089430 | Msa0575260:CDS |
| TCTTTATCTGAATTTCGATG+GGG | 0.682856 | 4_1:-79092203 | Msa0575260:exon |
| CAGGAAATAATGGTTGCTGT+GGG | 0.694551 | 4_1:+79089041 | None:intergenic |
| CCATCGCAGCAGCAGCACAG+GGG | 0.708588 | 4_1:-79092264 | Msa0575260:five_prime_UTR |
| TGTTGTTGGAAATAACCACA+TGG | 0.708917 | 4_1:-79088903 | Msa0575260:CDS |
| AAATATATAATCAAGAACTG+CGG | 0.721283 | 4_1:+79086928 | None:intergenic |
| GTGAACTTTGAGTGGCCATG+TGG | 0.742581 | 4_1:+79088888 | None:intergenic |
| TCGGAATCTCCAAACCCTAG+CGG | 0.748695 | 4_1:-79092228 | Msa0575260:five_prime_UTR |
| GATGGTACACTTGAAGACAT+GGG | 0.786065 | 4_1:+79088851 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTACAATTTATTATTT+AGG | - | chr4_1:79089558-79089577 | Msa0575260:intron | 10.0% |
| !! | CGTAAAAAAAAAATAAAAAA+AGG | + | chr4_1:79089644-79089663 | None:intergenic | 10.0% |
| !!! | CAATCATTTTAAAAAATAAA+CGG | - | chr4_1:79090982-79091001 | Msa0575260:intron | 10.0% |
| !!! | GTTTATTTTTTTAAAATGAT+TGG | + | chr4_1:79091205-79091224 | None:intergenic | 10.0% |
| !! | TTATAATTATAATTACCAAA+AGG | + | chr4_1:79091366-79091385 | None:intergenic | 10.0% |
| !!! | TCTAGTACATTAATATTTTA+AGG | + | chr4_1:79087901-79087920 | None:intergenic | 15.0% |
| !!! | CAATTTATTATTTAGGATAA+AGG | - | chr4_1:79089565-79089584 | Msa0575260:intron | 15.0% |
| !!! | TTGAAAAAAAATCTTTTCAT+TGG | - | chr4_1:79090719-79090738 | Msa0575260:intron | 15.0% |
| !!! | CATCATTACAATTTATTTTA+TGG | - | chr4_1:79091590-79091609 | Msa0575260:intron | 15.0% |
| !! | GTGAATTCAATTTACTATTT+AGG | - | chr4_1:79087508-79087527 | Msa0575260:intron | 20.0% |
| !!! | TTTACTATTTAGGTTCAATT+TGG | - | chr4_1:79087518-79087537 | Msa0575260:intron | 20.0% |
| !!! | ATTATATCGTTTTTCTTTTC+AGG | - | chr4_1:79087937-79087956 | Msa0575260:intron | 20.0% |
| !!! | TTATATCGTTTTTCTTTTCA+GGG | - | chr4_1:79087938-79087957 | Msa0575260:intron | 20.0% |
| !! | AGTACAGAAATTGAAATATA+CGG | - | chr4_1:79087987-79088006 | Msa0575260:intron | 20.0% |
| !! | TTAAAATGGAAAATTAACAG+AGG | + | chr4_1:79088176-79088195 | None:intergenic | 20.0% |
| !! | GATAACTAATTAACTAACTA+TGG | + | chr4_1:79088287-79088306 | None:intergenic | 20.0% |
| !! | ATAAAATGTAGCAGATATAT+AGG | - | chr4_1:79088322-79088341 | Msa0575260:CDS | 20.0% |
| !! | CAATTTCTTCATTAACATAA+AGG | + | chr4_1:79088939-79088958 | None:intergenic | 20.0% |
| !! | TTATGTTAATGAAGAAATTG+AGG | - | chr4_1:79088939-79088958 | Msa0575260:CDS | 20.0% |
| !! | ATTGAAATTGATCATTAATC+TGG | - | chr4_1:79089394-79089413 | Msa0575260:CDS | 20.0% |
| !! | TTGAAATTGATCATTAATCT+GGG | - | chr4_1:79089395-79089414 | Msa0575260:CDS | 20.0% |
| !!! | TATGTATTATTCTGTTTTGT+TGG | - | chr4_1:79089514-79089533 | Msa0575260:intron | 20.0% |
| !! | ATTCGAATTCTTATTCTATT+TGG | - | chr4_1:79089872-79089891 | Msa0575260:intron | 20.0% |
| !! | GTTTGATATAGTAAAAAACT+TGG | - | chr4_1:79090471-79090490 | Msa0575260:intron | 20.0% |
| !! | AATGTCTTTAACAAAATATC+AGG | - | chr4_1:79090810-79090829 | Msa0575260:intron | 20.0% |
| !! | TTGTTTACACATATTAAATG+AGG | - | chr4_1:79090940-79090959 | Msa0575260:intron | 20.0% |
| !! | TTGTATACACATATTAAAAG+AGG | - | chr4_1:79091051-79091070 | Msa0575260:intron | 20.0% |
| !!! | ATCTATTCTTTTAAAGTGTT+TGG | + | chr4_1:79091094-79091113 | None:intergenic | 20.0% |
| !!! | AAACACTTTAAAAGAATAGA+TGG | - | chr4_1:79091093-79091112 | Msa0575260:intron | 20.0% |
| !! | TGGAAGTTACATTTATTTAA+AGG | - | chr4_1:79091274-79091293 | Msa0575260:intron | 20.0% |
| !!! | TATGTATATGTGATTTTTGT+TGG | - | chr4_1:79091463-79091482 | Msa0575260:intron | 20.0% |
| !!! | ATGTATATGTGATTTTTGTT+GGG | - | chr4_1:79091464-79091483 | Msa0575260:intron | 20.0% |
| !! | AAGGGTAAAAAAAATAACAT+TGG | + | chr4_1:79091500-79091519 | None:intergenic | 20.0% |
| !! | GATATTTGTATTCAAACTTT+AGG | - | chr4_1:79092120-79092139 | Msa0575260:CDS | 20.0% |
| !! | CATGATGATATATATACTTT+AGG | - | chr4_1:79092144-79092163 | Msa0575260:CDS | 20.0% |
| !! | TAAATAAAGATTACACCAAA+TGG | + | chr4_1:79092171-79092190 | None:intergenic | 20.0% |
| !! | TTTATTTACATGTCTTGATT+TGG | - | chr4_1:79092183-79092202 | Msa0575260:CDS | 20.0% |
| !! | TTATTTACATGTCTTGATTT+GGG | - | chr4_1:79092184-79092203 | Msa0575260:CDS | 20.0% |
| !! | AAATATATAATCAAGAACTG+CGG | + | chr4_1:79092219-79092238 | None:intergenic | 20.0% |
| !! | AAATTAAAGAATGTAATGAG+AGG | - | chr4_1:79092281-79092300 | Msa0575260:five_prime_UTR | 20.0% |
| ! | ATCTTTATCTGAATTTCGAT+GGG | - | chr4_1:79086940-79086959 | Msa0575260:three_prime_UTR | 25.0% |
| ! | AAAACGAATGAAAGAGAAAA+GGG | + | chr4_1:79087162-79087181 | None:intergenic | 25.0% |
| ! | AAAAACGAATGAAAGAGAAA+AGG | + | chr4_1:79087163-79087182 | None:intergenic | 25.0% |
| !!! | TTCTCTTTCATTCGTTTTTT+AGG | - | chr4_1:79087164-79087183 | Msa0575260:three_prime_UTR | 25.0% |
| !!! | TCTCTTTCATTCGTTTTTTA+GGG | - | chr4_1:79087165-79087184 | Msa0575260:three_prime_UTR | 25.0% |
| ! | CAAATCATAGCATAAAATGA+GGG | + | chr4_1:79087297-79087316 | None:intergenic | 25.0% |
| ! | ACAAATCATAGCATAAAATG+AGG | + | chr4_1:79087298-79087317 | None:intergenic | 25.0% |
| ! | CAAATCATAGCATAAAATGA+GGG | + | chr4_1:79087297-79087316 | None:intergenic | 25.0% |
| ! | ACAAATCATAGCATAAAATG+AGG | + | chr4_1:79087298-79087317 | None:intergenic | 25.0% |
| ! | CTTATAAGTAAGCACTTATA+AGG | + | chr4_1:79087571-79087590 | None:intergenic | 25.0% |
| ! | ATAAGATATAAGCTATAAGC+TGG | - | chr4_1:79087634-79087653 | Msa0575260:intron | 25.0% |
| ! | TAATCAATTATGTACATCTC+AGG | + | chr4_1:79087860-79087879 | None:intergenic | 25.0% |
| ! | TCAATAAGAACTATGAAACA+AGG | + | chr4_1:79088094-79088113 | None:intergenic | 25.0% |
| ! | TGTACTTGTAGTAGTTATTA+AGG | + | chr4_1:79088135-79088154 | None:intergenic | 25.0% |
| ! | CTACAATGGAATCATTAAAA+TGG | + | chr4_1:79088190-79088209 | None:intergenic | 25.0% |
| ! | TTAGTTAATTAGTTATCTGC+AGG | - | chr4_1:79088290-79088309 | Msa0575260:intron | 25.0% |
| ! | TAGTTAATTAGTTATCTGCA+GGG | - | chr4_1:79088291-79088310 | Msa0575260:intron | 25.0% |
| ! | TAAAATAAATGGTTGGAGAT+GGG | + | chr4_1:79088425-79088444 | None:intergenic | 25.0% |
| ! | TTAAAATAAATGGTTGGAGA+TGG | + | chr4_1:79088426-79088445 | None:intergenic | 25.0% |
| !!! | TCTCCAACCATTTATTTTAA+CGG | - | chr4_1:79088426-79088445 | Msa0575260:intron | 25.0% |
| ! | TATCCGTTAAAATAAATGGT+TGG | + | chr4_1:79088432-79088451 | None:intergenic | 25.0% |
| !!! | AACCATTTATTTTAACGGAT+AGG | - | chr4_1:79088431-79088450 | Msa0575260:intron | 25.0% |
| ! | AACCTATCCGTTAAAATAAA+TGG | + | chr4_1:79088436-79088455 | None:intergenic | 25.0% |
| !!! | ATTTATTTTAACGGATAGGT+TGG | - | chr4_1:79088435-79088454 | Msa0575260:intron | 25.0% |
| !!! | TTTATTTTAACGGATAGGTT+GGG | - | chr4_1:79088436-79088455 | Msa0575260:intron | 25.0% |
| !! | CTTTAGTTTACAACTTACAT+GGG | - | chr4_1:79088582-79088601 | Msa0575260:CDS | 25.0% |
| !! | ATATTTTCATTCGGTTTTTC+TGG | - | chr4_1:79089325-79089344 | Msa0575260:intron | 25.0% |
| ! | TGAAATTGATCATTAATCTG+GGG | - | chr4_1:79089396-79089415 | Msa0575260:CDS | 25.0% |
| ! | AAATGTTTAACAGCATACAT+TGG | + | chr4_1:79089832-79089851 | None:intergenic | 25.0% |
| !! | TTCTTATTCTATTTGGAATG+TGG | - | chr4_1:79089879-79089898 | Msa0575260:intron | 25.0% |
| !! | CATACTACCTTTTTATTACT+TGG | - | chr4_1:79090859-79090878 | Msa0575260:intron | 25.0% |
| ! | AATAAATGTAACTTCCATTC+AGG | + | chr4_1:79091271-79091290 | None:intergenic | 25.0% |
| !! | TCCAAAATATTTGTTTGTTG+TGG | - | chr4_1:79091684-79091703 | Msa0575260:intron | 25.0% |
| !! | ACCACAACAAACAAATATTT+TGG | + | chr4_1:79091688-79091707 | None:intergenic | 25.0% |
| ! | TCAATGATATGAACTGAAAA+CGG | - | chr4_1:79091870-79091889 | Msa0575260:intron | 25.0% |
| ! | CAGATTTAAAAATGACGAAA+GGG | + | chr4_1:79091999-79092018 | None:intergenic | 25.0% |
| ! | TCAGATTTAAAAATGACGAA+AGG | + | chr4_1:79092000-79092019 | None:intergenic | 25.0% |
| !!! | TTTCGTCATTTTTAAATCTG+AGG | - | chr4_1:79091999-79092018 | Msa0575260:intron | 25.0% |
| !! | ATTTTTAAATCTGAGGAAGA+AGG | - | chr4_1:79092006-79092025 | Msa0575260:intron | 25.0% |
| !!! | ATATATACTTTAGGACCATT+TGG | - | chr4_1:79092153-79092172 | Msa0575260:CDS | 25.0% |
| !! | TATTTACATGTCTTGATTTG+GGG | - | chr4_1:79092185-79092204 | Msa0575260:CDS | 25.0% |
| CATCTTTATCTGAATTTCGA+TGG | - | chr4_1:79086939-79086958 | Msa0575260:three_prime_UTR | 30.0% | |
| TCTTTATCTGAATTTCGATG+GGG | - | chr4_1:79086941-79086960 | Msa0575260:three_prime_UTR | 30.0% | |
| AAGAGAAAAGGGAATATACT+TGG | + | chr4_1:79087151-79087170 | None:intergenic | 30.0% | |
| GCAATGAAAAAAAACACACT+TGG | + | chr4_1:79087343-79087362 | None:intergenic | 30.0% | |
| GCAATGAAAAAAAACACACT+TGG | + | chr4_1:79087343-79087362 | None:intergenic | 30.0% | |
| AATTGAAATATACGGAATGC+AGG | - | chr4_1:79087995-79088014 | Msa0575260:intron | 30.0% | |
| ATTGAAATATACGGAATGCA+GGG | - | chr4_1:79087996-79088015 | Msa0575260:intron | 30.0% | |
| TCCATTGTAGTATCAGAAAT+AGG | - | chr4_1:79088200-79088219 | Msa0575260:intron | 30.0% | |
| !! | TCCTATTTCTGATACTACAA+TGG | + | chr4_1:79088204-79088223 | None:intergenic | 30.0% |
| ATTGTAGTATCAGAAATAGG+AGG | - | chr4_1:79088203-79088222 | Msa0575260:intron | 30.0% | |
| TTGTAGTATCAGAAATAGGA+GGG | - | chr4_1:79088204-79088223 | Msa0575260:intron | 30.0% | |
| ACATCTGTTACAGTTATACA+GGG | + | chr4_1:79088246-79088265 | None:intergenic | 30.0% | |
| TACATCTGTTACAGTTATAC+AGG | + | chr4_1:79088247-79088266 | None:intergenic | 30.0% | |
| TAGCAGATATATAGGAGTTA+GGG | - | chr4_1:79088330-79088349 | Msa0575260:CDS | 30.0% | |
| TTGTAAACTAAAGCAGAACT+TGG | + | chr4_1:79088575-79088594 | None:intergenic | 30.0% | |
| ! | GCTTTAGTTTACAACTTACA+TGG | - | chr4_1:79088581-79088600 | Msa0575260:CDS | 30.0% |
| AAATTGAGGAAGAAATTGAC+TGG | - | chr4_1:79088953-79088972 | Msa0575260:CDS | 30.0% | |
| ! | TCTAATATCTCCATTTTCCA+AGG | - | chr4_1:79089020-79089039 | Msa0575260:CDS | 30.0% |
| AATGAAAATATGAGTAGACC+AGG | + | chr4_1:79089316-79089335 | None:intergenic | 30.0% | |
| ! | GGTCTACTCATATTTTCATT+CGG | - | chr4_1:79089316-79089335 | Msa0575260:intron | 30.0% |
| !!! | GTTTTTTGATCAACCCTAAT+AGG | - | chr4_1:79089364-79089383 | Msa0575260:CDS | 30.0% |
| TTGTTGGTATTATTGACGTT+AGG | - | chr4_1:79089530-79089549 | Msa0575260:intron | 30.0% | |
| ACATTCTGAACAGGAAATAA+TGG | + | chr4_1:79090116-79090135 | None:intergenic | 30.0% | |
| ACAAGTAGTTATCAAGCAAT+AGG | - | chr4_1:79090380-79090399 | Msa0575260:intron | 30.0% | |
| CAAGTAGTTATCAAGCAATA+GGG | - | chr4_1:79090381-79090400 | Msa0575260:intron | 30.0% | |
| ! | AAAGAAAATAAAGCGTTACC+TGG | + | chr4_1:79090410-79090429 | None:intergenic | 30.0% |
| ! | ACTAGTCTACTATTGTTTCA+TGG | - | chr4_1:79090745-79090764 | Msa0575260:intron | 30.0% |
| AGCAACTCCAAGTAATAAAA+AGG | + | chr4_1:79090869-79090888 | None:intergenic | 30.0% | |
| TTGTTTATGCATGCTAAAAG+AGG | - | chr4_1:79091161-79091180 | Msa0575260:CDS | 30.0% | |
| ! | GCTATTCTACTAATTCCTTT+TGG | - | chr4_1:79091348-79091367 | Msa0575260:intron | 30.0% |
| ! | TTTTATCGTGTACAAATGCT+GGG | + | chr4_1:79091440-79091459 | None:intergenic | 30.0% |
| !!! | CAAACAAATATTTTGGAGCA+TGG | + | chr4_1:79091681-79091700 | None:intergenic | 30.0% |
| !! | TTGTTTGTTGTGGTAATTTG+TGG | - | chr4_1:79091694-79091713 | Msa0575260:intron | 30.0% |
| CCAACATTCCTTTAATTGAT+CGG | - | chr4_1:79091922-79091941 | Msa0575260:intron | 30.0% | |
| AAAGAATGGCACCAATAATA+AGG | + | chr4_1:79091956-79091975 | None:intergenic | 30.0% | |
| ! | GTGCCATTCTTTACTTAAAT+GGG | - | chr4_1:79091964-79091983 | Msa0575260:intron | 30.0% |
| TTGCCCATTTAAGTAAAGAA+TGG | + | chr4_1:79091970-79091989 | None:intergenic | 30.0% | |
| AATATCAGCTGGAAAAAAGT+AGG | + | chr4_1:79092106-79092125 | None:intergenic | 30.0% | |
| GTTTGAATACAAATATCAGC+TGG | + | chr4_1:79092117-79092136 | None:intergenic | 30.0% | |
| !! | ATTTACATGTCTTGATTTGG+GGG | - | chr4_1:79092186-79092205 | Msa0575260:CDS | 30.0% |
| ! | TTTTGCTCTAACACAGAAAA+TGG | + | chr4_1:79092264-79092283 | None:intergenic | 30.0% |
| ! | AACATGACACTTAAAGTGCT+TGG | + | chr4_1:79087058-79087077 | None:intergenic | 35.0% |
| AAGCTATACTTGAGAGTTGA+TGG | - | chr4_1:79087663-79087682 | Msa0575260:intron | 35.0% | |
| AAGCACTTGTAAAACTGCTT+AGG | + | chr4_1:79087742-79087761 | None:intergenic | 35.0% | |
| AGACCCTTATAGTAACAAAG+AGG | - | chr4_1:79087798-79087817 | Msa0575260:intron | 35.0% | |
| GACCCTTATAGTAACAAAGA+GGG | - | chr4_1:79087799-79087818 | Msa0575260:intron | 35.0% | |
| CTCCCTCTTTGTTACTATAA+GGG | + | chr4_1:79087804-79087823 | None:intergenic | 35.0% | |
| TTGAAATATACGGAATGCAG+GGG | - | chr4_1:79087997-79088016 | Msa0575260:intron | 35.0% | |
| CATCTGTTACAGTTATACAG+GGG | + | chr4_1:79088245-79088264 | None:intergenic | 35.0% | |
| TTAATTAGTTATCTGCAGGG+TGG | - | chr4_1:79088294-79088313 | Msa0575260:intron | 35.0% | |
| TAATTAGTTATCTGCAGGGT+GGG | - | chr4_1:79088295-79088314 | Msa0575260:intron | 35.0% | |
| GTAGCAGATATATAGGAGTT+AGG | - | chr4_1:79088329-79088348 | Msa0575260:CDS | 35.0% | |
| AGCAGATATATAGGAGTTAG+GGG | - | chr4_1:79088331-79088350 | Msa0575260:CDS | 35.0% | |
| GTGGATATATGCAATTGTGT+CGG | + | chr4_1:79088550-79088569 | None:intergenic | 35.0% | |
| GACACAATTGCATATATCCA+CGG | - | chr4_1:79088549-79088568 | Msa0575260:CDS | 35.0% | |
| ! | TCAAGGATCTGAAATATGCA+TGG | - | chr4_1:79088883-79088902 | Msa0575260:CDS | 35.0% |
| GTCTCATAATAACTGCAACT+TGG | + | chr4_1:79089112-79089131 | None:intergenic | 35.0% | |
| AGTTGCAGTTATTATGAGAC+CGG | - | chr4_1:79089112-79089131 | Msa0575260:CDS | 35.0% | |
| !! | TCAGTTTTTCGGTTGTGTAA+GGG | + | chr4_1:79089285-79089304 | None:intergenic | 35.0% |
| !! | TTCAGTTTTTCGGTTGTGTA+AGG | + | chr4_1:79089286-79089305 | None:intergenic | 35.0% |
| ! | AGGTCATCTGTTCAGTTTTT+CGG | + | chr4_1:79089296-79089315 | None:intergenic | 35.0% |
| !!! | TTCATTCGGTTTTTCTGGTT+TGG | - | chr4_1:79089330-79089349 | Msa0575260:intron | 35.0% |
| !!! | TCATTCGGTTTTTCTGGTTT+GGG | - | chr4_1:79089331-79089350 | Msa0575260:intron | 35.0% |
| TTCAATGCCTAGTCCTATTA+GGG | + | chr4_1:79089380-79089399 | None:intergenic | 35.0% | |
| TTTCAATGCCTAGTCCTATT+AGG | + | chr4_1:79089381-79089400 | None:intergenic | 35.0% | |
| TATTTCCTGTTCAGAATGTG+AGG | - | chr4_1:79090117-79090136 | Msa0575260:intron | 35.0% | |
| TTTCCAACAACAGGAAACAA+AGG | + | chr4_1:79090233-79090252 | None:intergenic | 35.0% | |
| ! | ATGTGGTTATTTCCAACAAC+AGG | + | chr4_1:79090242-79090261 | None:intergenic | 35.0% |
| TGTTGTTGGAAATAACCACA+TGG | - | chr4_1:79090241-79090260 | Msa0575260:intron | 35.0% | |
| ! | TTTTCATTTTCTTGTCCCTC+TGG | - | chr4_1:79090518-79090537 | Msa0575260:intron | 35.0% |
| AACTCACATTCTTATGCTTC+TGG | - | chr4_1:79090565-79090584 | Msa0575260:intron | 35.0% | |
| TTCAAGAATATGACTGACCA+TGG | + | chr4_1:79090704-79090723 | None:intergenic | 35.0% | |
| !! | TTTTGATGCTTTGTTGCTGT+AGG | - | chr4_1:79090777-79090796 | Msa0575260:intron | 35.0% |
| AAAAGGTAGTATGACTTACC+TGG | + | chr4_1:79090852-79090871 | None:intergenic | 35.0% | |
| ! | ACGGCAAACAAAAAAAGTGT+AGG | - | chr4_1:79091001-79091020 | Msa0575260:intron | 35.0% |
| AATGTAACTTCCATTCAGGT+GGG | + | chr4_1:79091267-79091286 | None:intergenic | 35.0% | |
| AAATGTAACTTCCATTCAGG+TGG | + | chr4_1:79091268-79091287 | None:intergenic | 35.0% | |
| TCAAGCTATGCTTCCAATTT+GGG | - | chr4_1:79091304-79091323 | Msa0575260:intron | 35.0% | |
| ! | CTTTTATCGTGTACAAATGC+TGG | + | chr4_1:79091441-79091460 | None:intergenic | 35.0% |
| AAACTTTCGAATCAAGCGAA+GGG | + | chr4_1:79091518-79091537 | None:intergenic | 35.0% | |
| ! | TTCGCTTGATTCGAAAGTTT+GGG | - | chr4_1:79091518-79091537 | Msa0575260:intron | 35.0% |
| !! | ATTCGAAAGTTTGGGGTTTT+GGG | - | chr4_1:79091526-79091545 | Msa0575260:intron | 35.0% |
| CTCAAGTATCCTCTTATCTA+TGG | + | chr4_1:79091783-79091802 | None:intergenic | 35.0% | |
| ! | AGAAGTTTGAGAAGTGTACA+TGG | + | chr4_1:79091850-79091869 | None:intergenic | 35.0% |
| ATTAAAGGAATGTTGGAAGC+TGG | + | chr4_1:79091918-79091937 | None:intergenic | 35.0% | |
| CCGATCAATTAAAGGAATGT+TGG | + | chr4_1:79091925-79091944 | None:intergenic | 35.0% | |
| TTCCTTTAATTGATCGGTGA+AGG | - | chr4_1:79091928-79091947 | Msa0575260:intron | 35.0% | |
| TTCCTTCACCGATCAATTAA+AGG | + | chr4_1:79091933-79091952 | None:intergenic | 35.0% | |
| !! | GGTGCCATTCTTTACTTAAA+TGG | - | chr4_1:79091963-79091982 | Msa0575260:intron | 35.0% |
| !!! | AAGGTTGCAATGGTTTTGAA+AGG | - | chr4_1:79092025-79092044 | Msa0575260:CDS | 35.0% |
| ATCTGACAATATTTGTGCGT+GGG | - | chr4_1:79092051-79092070 | Msa0575260:CDS | 35.0% | |
| TTCAGATAAAGATGCCGCTA+GGG | + | chr4_1:79086933-79086952 | None:intergenic | 40.0% | |
| ATTCAGATAAAGATGCCGCT+AGG | + | chr4_1:79086934-79086953 | None:intergenic | 40.0% | |
| TTATCTGAATTTCGATGGGG+AGG | - | chr4_1:79086944-79086963 | Msa0575260:three_prime_UTR | 40.0% | |
| TATGTCCATTCACGTTCTTC+AGG | - | chr4_1:79087107-79087126 | Msa0575260:three_prime_UTR | 40.0% | |
| !!! | ACTTGGTGACGTTTTCTTTG+TGG | + | chr4_1:79087134-79087153 | None:intergenic | 40.0% |
| GAGGGAAACTAGTAAGACAA+AGG | + | chr4_1:79087279-79087298 | None:intergenic | 40.0% | |
| GAGGGAAACTAGTAAGACAA+AGG | + | chr4_1:79087279-79087298 | None:intergenic | 40.0% | |
| CCTCCCTCTTTGTTACTATA+AGG | + | chr4_1:79087805-79087824 | None:intergenic | 40.0% | |
| CCTTATAGTAACAAAGAGGG+AGG | - | chr4_1:79087802-79087821 | Msa0575260:intron | 40.0% | |
| ATTTCTGTACTCTCTCTTCC+AGG | + | chr4_1:79087978-79087997 | None:intergenic | 40.0% | |
| GCAGATATATAGGAGTTAGG+GGG | - | chr4_1:79088332-79088351 | Msa0575260:CDS | 40.0% | |
| !! | ATTTTAACGGATAGGTTGGG+TGG | - | chr4_1:79088439-79088458 | Msa0575260:intron | 40.0% |
| AAATGGATAGCAGAGCAAGA+AGG | - | chr4_1:79088489-79088508 | Msa0575260:CDS | 40.0% | |
| ! | AGAAGGGGCTACTTAGATTT+TGG | - | chr4_1:79088515-79088534 | Msa0575260:CDS | 40.0% |
| GATTTCTTATGCTCCTGATG+TGG | + | chr4_1:79088863-79088882 | None:intergenic | 40.0% | |
| ! | CAGGAGCATAAGAAATCTCA+AGG | - | chr4_1:79088688-79088707 | Msa0575260:intron | 40.0% |
| ! | ATCTCCATTTTCCAAGGTCA+AGG | - | chr4_1:79089026-79089045 | Msa0575260:CDS | 40.0% |
| CTATCCTTGACCTTGGAAAA+TGG | + | chr4_1:79089033-79089052 | None:intergenic | 40.0% | |
| ACTTCAACTATCCTTGACCT+TGG | + | chr4_1:79089040-79089059 | None:intergenic | 40.0% | |
| GTTGCAGTTATTATGAGACC+GGG | - | chr4_1:79089113-79089132 | Msa0575260:CDS | 40.0% | |
| !! | AGAGTATTAGTCTTGAGACC+CGG | + | chr4_1:79089134-79089153 | None:intergenic | 40.0% |
| CAGTATGTATACAGCGAACA+TGG | - | chr4_1:79089204-79089223 | Msa0575260:intron | 40.0% | |
| ! | GGTTGTGTAAGGGTTAGTAA+TGG | + | chr4_1:79089275-79089294 | None:intergenic | 40.0% |
| GAAAAACTGAACAGATGACC+TGG | - | chr4_1:79089295-79089314 | Msa0575260:intron | 40.0% | |
| TGATCAACCCTAATAGGACT+AGG | - | chr4_1:79089370-79089389 | Msa0575260:CDS | 40.0% | |
| TACCGAATACCTGACATGTA+TGG | - | chr4_1:79089479-79089498 | Msa0575260:intron | 40.0% | |
| CACCATACATGTCAGGTATT+CGG | + | chr4_1:79089484-79089503 | None:intergenic | 40.0% | |
| CAGCATACATTGGTCGAATT+GGG | + | chr4_1:79089822-79089841 | None:intergenic | 40.0% | |
| ACAGCATACATTGGTCGAAT+TGG | + | chr4_1:79089823-79089842 | None:intergenic | 40.0% | |
| AGATATAATCCTGCTGTACC+AGG | - | chr4_1:79089990-79090009 | Msa0575260:intron | 40.0% | |
| AATTGAAACAGTTGGAGGCT+GGG | + | chr4_1:79090066-79090085 | None:intergenic | 40.0% | |
| AACTGTTTCAATTCCTCCTC+CGG | - | chr4_1:79090073-79090092 | Msa0575260:intron | 40.0% | |
| CAGGAAATAATGGTTGCTGT+GGG | + | chr4_1:79090106-79090125 | None:intergenic | 40.0% | |
| ACAGGAAATAATGGTTGCTG+TGG | + | chr4_1:79090107-79090126 | None:intergenic | 40.0% | |
| ! | GTAATCTGAGATTGTAGTGC+AGG | + | chr4_1:79090167-79090186 | None:intergenic | 40.0% |
| GAAACAAAGGCTGTGAAACT+GGG | + | chr4_1:79090220-79090239 | None:intergenic | 40.0% | |
| GGAAAATGGTGAACTTTGAG+TGG | + | chr4_1:79090267-79090286 | None:intergenic | 40.0% | |
| GATGGTACACTTGAAGACAT+GGG | + | chr4_1:79090296-79090315 | None:intergenic | 40.0% | |
| TGATGGTACACTTGAAGACA+TGG | + | chr4_1:79090297-79090316 | None:intergenic | 40.0% | |
| GGAACATTTAAAGAAAGCCC+AGG | + | chr4_1:79090326-79090345 | None:intergenic | 40.0% | |
| GTTCCTATTGACGCACATTT+AGG | - | chr4_1:79090341-79090360 | Msa0575260:intron | 40.0% | |
| ATGCCTAAATGTGCGTCAAT+AGG | + | chr4_1:79090347-79090366 | None:intergenic | 40.0% | |
| TATCAAGCAATAGGGATTCC+AGG | - | chr4_1:79090389-79090408 | Msa0575260:intron | 40.0% | |
| TGTCAAAAAACCAGTCACAG+TGG | + | chr4_1:79090440-79090459 | None:intergenic | 40.0% | |
| ! | TTGTCCCTCTGGTTTCTTAT+AGG | - | chr4_1:79090529-79090548 | Msa0575260:intron | 40.0% |
| ! | TTGTTTGAGATTACTGGTGG+AGG | + | chr4_1:79090619-79090638 | None:intergenic | 40.0% |
| !! | GCTTTGTTTGAGATTACTGG+TGG | + | chr4_1:79090622-79090641 | None:intergenic | 40.0% |
| !! | GGAGCTTTGTTTGAGATTAC+TGG | + | chr4_1:79090625-79090644 | None:intergenic | 40.0% |
| TAACGAAGTCTACCTGGTTT+GGG | - | chr4_1:79090663-79090682 | Msa0575260:intron | 40.0% | |
| TCACATCTAACCAGATGAGT+AGG | - | chr4_1:79090890-79090909 | Msa0575260:intron | 40.0% | |
| AAGCATAAAGCCTACTCATC+TGG | + | chr4_1:79090903-79090922 | None:intergenic | 40.0% | |
| GTCAAGCTATGCTTCCAATT+TGG | - | chr4_1:79091303-79091322 | Msa0575260:intron | 40.0% | |
| CAAGCTATGCTTCCAATTTG+GGG | - | chr4_1:79091305-79091324 | Msa0575260:intron | 40.0% | |
| AAGCTATGCTTCCAATTTGG+GGG | - | chr4_1:79091306-79091325 | Msa0575260:intron | 40.0% | |
| TCTTTAGATAGCCCCCAAAT+TGG | + | chr4_1:79091320-79091339 | None:intergenic | 40.0% | |
| CAAACTTTCGAATCAAGCGA+AGG | + | chr4_1:79091519-79091538 | None:intergenic | 40.0% | |
| ! | CTTCGCTTGATTCGAAAGTT+TGG | - | chr4_1:79091517-79091536 | Msa0575260:intron | 40.0% |
| ! | TCGCTTGATTCGAAAGTTTG+GGG | - | chr4_1:79091519-79091538 | Msa0575260:intron | 40.0% |
| !! | GATTCGAAAGTTTGGGGTTT+TGG | - | chr4_1:79091525-79091544 | Msa0575260:intron | 40.0% |
| CGAATGAGCAAAAGTCTGTT+GGG | + | chr4_1:79091567-79091586 | None:intergenic | 40.0% | |
| ACGAATGAGCAAAAGTCTGT+TGG | + | chr4_1:79091568-79091587 | None:intergenic | 40.0% | |
| GGAACAAGTGAATTCAGACT+TGG | - | chr4_1:79091611-79091630 | Msa0575260:intron | 40.0% | |
| AGAGTTTGGATCTCTTGCAT+AGG | - | chr4_1:79091654-79091673 | Msa0575260:intron | 40.0% | |
| CTTATCTATGGCTGCATCAA+TGG | + | chr4_1:79091771-79091790 | None:intergenic | 40.0% | |
| TTGATGCAGCCATAGATAAG+AGG | - | chr4_1:79091771-79091790 | Msa0575260:intron | 40.0% | |
| CGGTGAAGGAACCTTATTAT+TGG | - | chr4_1:79091942-79091961 | Msa0575260:intron | 40.0% | |
| CATCTGACAATATTTGTGCG+TGG | - | chr4_1:79092050-79092069 | Msa0575260:CDS | 40.0% | |
| TTTGTCTGTGTGCTAAGCAT+AGG | + | chr4_1:79092319-79092338 | None:intergenic | 40.0% | |
| ACGATTAAGAACCCTAGCCT+AGG | - | chr4_1:79086832-79086851 | Msa0575260:three_prime_UTR | 45.0% | |
| GAAGAAGAAGACGAAGACCT+AGG | + | chr4_1:79086852-79086871 | None:intergenic | 45.0% | |
| ATAAAGATGCCGCTAGGGTT+TGG | + | chr4_1:79086928-79086947 | None:intergenic | 45.0% | |
| ATTTGACGACGAGAAGATCC+TGG | - | chr4_1:79087017-79087036 | Msa0575260:three_prime_UTR | 45.0% | |
| CATAAGAAGCTTTCCACTGC+TGG | - | chr4_1:79087081-79087100 | Msa0575260:three_prime_UTR | 45.0% | |
| TCTCTTCCAGGTTTCGCATT+TGG | + | chr4_1:79087966-79087985 | None:intergenic | 45.0% | |
| GATGTCTTGGCTGCTCATTA+TGG | - | chr4_1:79088029-79088048 | Msa0575260:intron | 45.0% | |
| GCTGCTCATTATGGAGATGA+AGG | - | chr4_1:79088038-79088057 | Msa0575260:intron | 45.0% | |
| ATCAGAAATAGGAGGGATGC+AGG | - | chr4_1:79088211-79088230 | Msa0575260:intron | 45.0% | |
| TCAGAAATAGGAGGGATGCA+GGG | - | chr4_1:79088212-79088231 | Msa0575260:intron | 45.0% | |
| GATATATAGGAGTTAGGGGG+TGG | - | chr4_1:79088335-79088354 | Msa0575260:CDS | 45.0% | |
| GACAAATGGTTGGATCCAGT+CGG | - | chr4_1:79088357-79088376 | Msa0575260:intron | 45.0% | |
| CAGAGCAAGAAGGAGAAGAA+GGG | - | chr4_1:79088499-79088518 | Msa0575260:CDS | 45.0% | |
| AGAGCAAGAAGGAGAAGAAG+GGG | - | chr4_1:79088500-79088519 | Msa0575260:CDS | 45.0% | |
| !! | GCTACTTAGATTTTGGCCGT+CGG | - | chr4_1:79088522-79088541 | Msa0575260:CDS | 45.0% |
| GATTTCTTATGCTCCTGACG+TGG | + | chr4_1:79088685-79088704 | None:intergenic | 45.0% | |
| GATTTCTTATGCTCCTGACG+TGG | + | chr4_1:79088685-79088704 | None:intergenic | 45.0% | |
| TTCTTATGCTCCTGATGTGG+AGG | + | chr4_1:79088860-79088879 | None:intergenic | 45.0% | |
| AAGACAGTGATGCGACAAGT+CGG | + | chr4_1:79089166-79089185 | None:intergenic | 45.0% | |
| TGGTAGCAGTCAGTTTCTCA+TGG | - | chr4_1:79089224-79089243 | Msa0575260:intron | 45.0% | |
| !!! | TCGGTTTTTCTGGTTTGGGT+TGG | - | chr4_1:79089335-79089354 | Msa0575260:CDS | 45.0% |
| !!! | CGGTTTTTCTGGTTTGGGTT+GGG | - | chr4_1:79089336-79089355 | Msa0575260:CDS | 45.0% |
| !!! | GGTTTTTCTGGTTTGGGTTG+GGG | - | chr4_1:79089337-79089356 | Msa0575260:CDS | 45.0% |
| CGAATACCTGACATGTATGG+TGG | - | chr4_1:79089482-79089501 | Msa0575260:intron | 45.0% | |
| TGTTCCATCAAAGACAGCCA+AGG | - | chr4_1:79089714-79089733 | Msa0575260:intron | 45.0% | |
| ATTGAAACAGTTGGAGGCTG+GGG | + | chr4_1:79090065-79090084 | None:intergenic | 45.0% | |
| GAATTGAAACAGTTGGAGGC+TGG | + | chr4_1:79090067-79090086 | None:intergenic | 45.0% | |
| GGAGGAATTGAAACAGTTGG+AGG | + | chr4_1:79090071-79090090 | None:intergenic | 45.0% | |
| GGAGGAGGAATTGAAACAGT+TGG | + | chr4_1:79090074-79090093 | None:intergenic | 45.0% | |
| !! | GAAGTAGTTGATGGCAATGG+AGG | + | chr4_1:79090143-79090162 | None:intergenic | 45.0% |
| !! | GGTGAAGTAGTTGATGGCAA+TGG | + | chr4_1:79090146-79090165 | None:intergenic | 45.0% |
| AGTGCAGGTGAAGTAGTTGA+TGG | + | chr4_1:79090152-79090171 | None:intergenic | 45.0% | |
| CAATCTCAGATTACTCCTCC+TGG | - | chr4_1:79090173-79090192 | Msa0575260:intron | 45.0% | |
| GGAAACAAAGGCTGTGAAAC+TGG | + | chr4_1:79090221-79090240 | None:intergenic | 45.0% | |
| ! | CAGCCTTTGTTTCCTGTTGT+TGG | - | chr4_1:79090227-79090246 | Msa0575260:intron | 45.0% |
| AGTGTACCATCAATAGCTCC+TGG | - | chr4_1:79090305-79090324 | Msa0575260:intron | 45.0% | |
| GTGTACCATCAATAGCTCCT+GGG | - | chr4_1:79090306-79090325 | Msa0575260:intron | 45.0% | |
| TTTCCTTGAACCACTGTGAC+TGG | - | chr4_1:79090427-79090446 | Msa0575260:intron | 45.0% | |
| AAACCAGTCACAGTGGTTCA+AGG | + | chr4_1:79090433-79090452 | None:intergenic | 45.0% | |
| ! | TCCCTCTGGTTTCTTATAGG+TGG | - | chr4_1:79090532-79090551 | Msa0575260:intron | 45.0% |
| CCCACCTATAAGAAACCAGA+GGG | + | chr4_1:79090536-79090555 | None:intergenic | 45.0% | |
| ! | CCCTCTGGTTTCTTATAGGT+GGG | - | chr4_1:79090533-79090552 | Msa0575260:intron | 45.0% |
| TCCCACCTATAAGAAACCAG+AGG | + | chr4_1:79090537-79090556 | None:intergenic | 45.0% | |
| TATGCTTCTGGCCCAAATAC+CGG | - | chr4_1:79090577-79090596 | Msa0575260:intron | 45.0% | |
| TTGAAGGACCACCGGTATTT+GGG | + | chr4_1:79090591-79090610 | None:intergenic | 45.0% | |
| ATTGAAGGACCACCGGTATT+TGG | + | chr4_1:79090592-79090611 | None:intergenic | 45.0% | |
| AATACCGGTGGTCCTTCAAT+TGG | - | chr4_1:79090592-79090611 | Msa0575260:intron | 45.0% | |
| AACCAGGTAGACTTCGTTAG+TGG | + | chr4_1:79090662-79090681 | None:intergenic | 45.0% | |
| CTAACGAAGTCTACCTGGTT+TGG | - | chr4_1:79090662-79090681 | Msa0575260:intron | 45.0% | |
| ! | TGATGCTTTGTTGCTGTAGG+AGG | - | chr4_1:79090780-79090799 | Msa0575260:intron | 45.0% |
| GGTTCATGATGAAAGTAGCC+AGG | - | chr4_1:79090831-79090850 | Msa0575260:intron | 45.0% | |
| ! | TTGGAAGCATAGCTTGACAG+TGG | + | chr4_1:79091301-79091320 | None:intergenic | 45.0% |
| GGGATGAAGGATCACAAAGT+TGG | + | chr4_1:79091420-79091439 | None:intergenic | 45.0% | |
| GTGTACAAATGCTGGGATGA+AGG | + | chr4_1:79091433-79091452 | None:intergenic | 45.0% | |
| TCAGCTTCTTTCGCAGAGTT+TGG | - | chr4_1:79091640-79091659 | Msa0575260:intron | 45.0% | |
| TCTGAGGAAGAAGGTTGCAA+TGG | - | chr4_1:79092015-79092034 | Msa0575260:CDS | 45.0% | |
| !!! | AATCATTTTAAAAAAATAAA+CGG | - | chr4_1:79091204-79091223 | Msa0575260:intron | 5.0% |
| GAAGACGAAGACCTAGGCTA+GGG | + | chr4_1:79086846-79086865 | None:intergenic | 50.0% | |
| AGAAGACGAAGACCTAGGCT+AGG | + | chr4_1:79086847-79086866 | None:intergenic | 50.0% | |
| TCGGAATCTCCAAACCCTAG+CGG | - | chr4_1:79086916-79086935 | Msa0575260:three_prime_UTR | 50.0% | |
| ! | GAAGAAGCGCGTTGCTTCAA+AGG | - | chr4_1:79086969-79086988 | Msa0575260:three_prime_UTR | 50.0% |
| TGGCTTTCTGATGCTGAACC+AGG | + | chr4_1:79087038-79087057 | None:intergenic | 50.0% | |
| AAGAAGCTTTCCACTGCTGG+TGG | - | chr4_1:79087084-79087103 | Msa0575260:three_prime_UTR | 50.0% | |
| AATGGACATACCACCAGCAG+TGG | + | chr4_1:79087097-79087116 | None:intergenic | 50.0% | |
| GTGGACCTGAAGAACGTGAA+TGG | + | chr4_1:79087115-79087134 | None:intergenic | 50.0% | |
| TGAGCAGCCAAGACATCTGA+CGG | + | chr4_1:79088026-79088045 | None:intergenic | 50.0% | |
| AAATAGGAGGGATGCAGGGA+AGG | - | chr4_1:79088216-79088235 | Msa0575260:intron | 50.0% | |
| TTAGGGGGTGGACAAATGGT+TGG | - | chr4_1:79088347-79088366 | Msa0575260:CDS | 50.0% | |
| ! | CTAGATGGTGGTTTACCGAC+TGG | + | chr4_1:79088375-79088394 | None:intergenic | 50.0% |
| CACCATCTAGAGAAATCCGC+CGG | - | chr4_1:79088385-79088404 | Msa0575260:intron | 50.0% | |
| !!! | GGAGATGGGCTGAGATTTTC+CGG | + | chr4_1:79088411-79088430 | None:intergenic | 50.0% |
| ! | TTAACGGATAGGTTGGGTGG+CGG | - | chr4_1:79088442-79088461 | Msa0575260:intron | 50.0% |
| GCAGAGCAAGAAGGAGAAGA+AGG | - | chr4_1:79088498-79088517 | Msa0575260:CDS | 50.0% | |
| ACTAAAGCAGAACTTGGCCG+TGG | + | chr4_1:79088569-79088588 | None:intergenic | 50.0% | |
| AATCGCCTTCAACCGTGAGA+AGG | - | chr4_1:79088656-79088675 | Msa0575260:intron | 50.0% | |
| TTCTTATGCTCCTGACGTGG+AGG | + | chr4_1:79088682-79088701 | None:intergenic | 50.0% | |
| AATCGCCTTCAACCGTGAGA+AGG | - | chr4_1:79088656-79088675 | Msa0575260:intron | 50.0% | |
| TTCTTATGCTCCTGACGTGG+AGG | + | chr4_1:79088682-79088701 | None:intergenic | 50.0% | |
| AATCGCCTTCAACCGTGAGA+AGG | - | chr4_1:79088656-79088675 | Msa0575260:intron | 50.0% | |
| !! | TTCTGGTTTGGGTTGGGGTT+CGG | - | chr4_1:79089342-79089361 | Msa0575260:CDS | 50.0% |
| CAACAGCCACCATACATGTC+AGG | + | chr4_1:79089491-79089510 | None:intergenic | 50.0% | |
| TCCATCAAAGACAGCCAAGG+TGG | - | chr4_1:79089717-79089736 | Msa0575260:intron | 50.0% | |
| TCCACCTTGGCTGTCTTTGA+TGG | + | chr4_1:79089721-79089740 | None:intergenic | 50.0% | |
| ATCCCATCAACCCCATTTGC+AGG | - | chr4_1:79089742-79089761 | Msa0575260:intron | 50.0% | |
| ! | CACCTGCAAATGGGGTTGAT+GGG | + | chr4_1:79089747-79089766 | None:intergenic | 50.0% |
| AACCCCATTTGCAGGTGGAA+TGG | - | chr4_1:79089750-79089769 | Msa0575260:intron | 50.0% | |
| CACCATTCCACCTGCAAATG+GGG | + | chr4_1:79089755-79089774 | None:intergenic | 50.0% | |
| GCACCATTCCACCTGCAAAT+GGG | + | chr4_1:79089756-79089775 | None:intergenic | 50.0% | |
| GGTTGATCGTGGAGGATATC+CGG | + | chr4_1:79089794-79089813 | None:intergenic | 50.0% | |
| ATATCCTCCACGATCAACCG+TGG | - | chr4_1:79089795-79089814 | Msa0575260:intron | 50.0% | |
| TATCCTCCACGATCAACCGT+GGG | - | chr4_1:79089796-79089815 | Msa0575260:intron | 50.0% | |
| ATCTGCAGCAGCAGAGAGAT+AGG | + | chr4_1:79089974-79089993 | None:intergenic | 50.0% | |
| CAACTCCCCAAGCATTAGGA+GGG | + | chr4_1:79090016-79090035 | None:intergenic | 50.0% | |
| ACAACTCCCCAAGCATTAGG+AGG | + | chr4_1:79090017-79090036 | None:intergenic | 50.0% | |
| GGAACAACTCCCCAAGCATT+AGG | + | chr4_1:79090020-79090039 | None:intergenic | 50.0% | |
| !! | GGTTGCTGTGGGTATTGAAC+CGG | + | chr4_1:79090095-79090114 | None:intergenic | 50.0% |
| ACTGGGACAGGTGTAGATGA+AGG | + | chr4_1:79090203-79090222 | None:intergenic | 50.0% | |
| AAAGGCTGTGAAACTGGGAC+AGG | + | chr4_1:79090215-79090234 | None:intergenic | 50.0% | |
| GTGAACTTTGAGTGGCCATG+TGG | + | chr4_1:79090259-79090278 | None:intergenic | 50.0% | |
| ACTTGAAGACATGGGTGCAG+CGG | + | chr4_1:79090288-79090307 | None:intergenic | 50.0% | |
| GAAAGCCCAGGAGCTATTGA+TGG | + | chr4_1:79090314-79090333 | None:intergenic | 50.0% | |
| AGGTCCAATTGAAGGACCAC+CGG | + | chr4_1:79090599-79090618 | None:intergenic | 50.0% | |
| ACTGGTGGAGGTCCAATTGA+AGG | + | chr4_1:79090607-79090626 | None:intergenic | 50.0% | |
| AGGTAGACTTCGTTAGTGGC+AGG | + | chr4_1:79090658-79090677 | None:intergenic | 50.0% | |
| TGCCACTAACGAAGTCTACC+TGG | - | chr4_1:79090657-79090676 | Msa0575260:intron | 50.0% | |
| CATTCAGGTGGGAGGCAAAA+GGG | + | chr4_1:79091256-79091275 | None:intergenic | 50.0% | |
| GTAACTTCCATTCAGGTGGG+AGG | + | chr4_1:79091264-79091283 | None:intergenic | 50.0% | |
| AGTGAATTCAGACTTGGCCC+AGG | - | chr4_1:79091617-79091636 | Msa0575260:intron | 50.0% | |
| TCTGCGAAAGAAGCTGACCT+GGG | + | chr4_1:79091637-79091656 | None:intergenic | 50.0% | |
| CAGGGGTGGTTGAACGGAAT+CGG | - | chr4_1:79086897-79086916 | Msa0575260:three_prime_UTR | 55.0% | |
| AGCGCGTTGCTTCAAAGGTG+TGG | - | chr4_1:79086974-79086993 | Msa0575260:three_prime_UTR | 55.0% | |
| ! | AGGGTGCCAAATGCGAAACC+TGG | - | chr4_1:79087957-79087976 | Msa0575260:intron | 55.0% |
| GGGGATTCCGTCAGATGTCT+TGG | - | chr4_1:79088016-79088035 | Msa0575260:intron | 55.0% | |
| GGAGTTAGGGGGTGGACAAA+TGG | - | chr4_1:79088343-79088362 | Msa0575260:CDS | 55.0% | |
| ! | CGGCGGATTTCTCTAGATGG+TGG | + | chr4_1:79088387-79088406 | None:intergenic | 55.0% |
| ATCTAGAGAAATCCGCCGGC+CGG | - | chr4_1:79088389-79088408 | Msa0575260:intron | 55.0% | |
| !! | ATGGGCTGAGATTTTCCGGC+CGG | + | chr4_1:79088407-79088426 | None:intergenic | 55.0% |
| ! | TAACGGATAGGTTGGGTGGC+GGG | - | chr4_1:79088443-79088462 | Msa0575260:intron | 55.0% |
| !! | GTGGCGGGTTCTAACGAAAG+CGG | - | chr4_1:79088458-79088477 | Msa0575260:intron | 55.0% |
| !! | TGGCGGGTTCTAACGAAAGC+GGG | - | chr4_1:79088459-79088478 | Msa0575260:intron | 55.0% |
| ! | GGGTTCTAACGAAAGCGGGT+GGG | - | chr4_1:79088463-79088482 | Msa0575260:CDS | 55.0% |
| !! | CGAAAGCGGGTGGGTTGAAA+TGG | - | chr4_1:79088472-79088491 | Msa0575260:CDS | 55.0% |
| ! | TGCAATTGTGTCGGCACCGA+CGG | + | chr4_1:79088541-79088560 | None:intergenic | 55.0% |
| CTGATGTGGAGGCCTTCTCA+CGG | + | chr4_1:79088849-79088868 | None:intergenic | 55.0% | |
| !! | GGTTGATGGGATGTCCACCT+TGG | + | chr4_1:79089734-79089753 | None:intergenic | 55.0% |
| CCACCTGCAAATGGGGTTGA+TGG | + | chr4_1:79089748-79089767 | None:intergenic | 55.0% | |
| CCATCAACCCCATTTGCAGG+TGG | - | chr4_1:79089745-79089764 | Msa0575260:intron | 55.0% | |
| GGCACCATTCCACCTGCAAA+TGG | + | chr4_1:79089757-79089776 | None:intergenic | 55.0% | |
| !! | TGGAATGGTGCCACCTCCTA+TGG | - | chr4_1:79089765-79089784 | Msa0575260:intron | 55.0% |
| !! | GGAATGGTGCCACCTCCTAT+GGG | - | chr4_1:79089766-79089785 | Msa0575260:intron | 55.0% |
| TATCCGGTACCCATAGGAGG+TGG | + | chr4_1:79089778-79089797 | None:intergenic | 55.0% | |
| GGATATCCGGTACCCATAGG+AGG | + | chr4_1:79089781-79089800 | None:intergenic | 55.0% | |
| GGAGGATATCCGGTACCCAT+AGG | + | chr4_1:79089784-79089803 | None:intergenic | 55.0% | |
| CATTGGTCGAATTGGGCCCA+CGG | + | chr4_1:79089815-79089834 | None:intergenic | 55.0% | |
| TACCAGGCCCTCCTAATGCT+TGG | - | chr4_1:79090006-79090025 | Msa0575260:intron | 55.0% | |
| ACCAGGCCCTCCTAATGCTT+GGG | - | chr4_1:79090007-79090026 | Msa0575260:intron | 55.0% | |
| !! | TGTGGGTATTGAACCGGAGG+AGG | + | chr4_1:79090089-79090108 | None:intergenic | 55.0% |
| !! | TGCTGTGGGTATTGAACCGG+AGG | + | chr4_1:79090092-79090111 | None:intergenic | 55.0% |
| GGAGGCCTCACATTCTGAAC+AGG | + | chr4_1:79090125-79090144 | None:intergenic | 55.0% | |
| GTAGATGAAGGCAGTCCAGG+AGG | + | chr4_1:79090191-79090210 | None:intergenic | 55.0% | |
| GGTGTAGATGAAGGCAGTCC+AGG | + | chr4_1:79090194-79090213 | None:intergenic | 55.0% | |
| GACATGGGTGCAGCGGAAAA+TGG | + | chr4_1:79090281-79090300 | None:intergenic | 55.0% | |
| TTAGTGGCAGGCTGAGTAGC+GGG | + | chr4_1:79090646-79090665 | None:intergenic | 55.0% | |
| GTTAGTGGCAGGCTGAGTAG+CGG | + | chr4_1:79090647-79090666 | None:intergenic | 55.0% | |
| !! | CTACCTGGTTTGGGATGACG+AGG | - | chr4_1:79090672-79090691 | Msa0575260:intron | 55.0% |
| TTGCCTCGTCATCCCAAACC+AGG | + | chr4_1:79090678-79090697 | None:intergenic | 55.0% | |
| GGATGACGAGGCAATGTCCA+TGG | - | chr4_1:79090684-79090703 | Msa0575260:intron | 55.0% | |
| CCATTCAGGTGGGAGGCAAA+AGG | + | chr4_1:79091257-79091276 | None:intergenic | 55.0% | |
| ! | CCTTTTGCCTCCCACCTGAA+TGG | - | chr4_1:79091254-79091273 | Msa0575260:intron | 55.0% |
| CTCTGCGAAAGAAGCTGACC+TGG | + | chr4_1:79091638-79091657 | None:intergenic | 55.0% | |
| TCCATCGCAGCAGCAGCACA+GGG | - | chr4_1:79086879-79086898 | Msa0575260:three_prime_UTR | 60.0% | |
| GCAGCACAGGGGTGGTTGAA+CGG | - | chr4_1:79086891-79086910 | Msa0575260:three_prime_UTR | 60.0% | |
| ! | GGCCGGCGGATTTCTCTAGA+TGG | + | chr4_1:79088390-79088409 | None:intergenic | 60.0% |
| ! | CGGGTTCTAACGAAAGCGGG+TGG | - | chr4_1:79088462-79088481 | Msa0575260:CDS | 60.0% |
| GGAGGCCTTCTCACGGTTGA+AGG | + | chr4_1:79088664-79088683 | None:intergenic | 60.0% | |
| CTGACGTGGAGGCCTTCTCA+CGG | + | chr4_1:79088671-79088690 | None:intergenic | 60.0% | |
| GGAGGCCTTCTCACGGTTGA+AGG | + | chr4_1:79088664-79088683 | None:intergenic | 60.0% | |
| CTGACGTGGAGGCCTTCTCA+CGG | + | chr4_1:79088671-79088690 | None:intergenic | 60.0% | |
| GGAGGCCTTCTCACGGTTGA+AGG | + | chr4_1:79088664-79088683 | None:intergenic | 60.0% | |
| CGTGAGAAGGCCTCCACATC+AGG | - | chr4_1:79088847-79088866 | Msa0575260:CDS | 60.0% | |
| GTGCCACCTCCTATGGGTAC+CGG | - | chr4_1:79089772-79089791 | Msa0575260:intron | 60.0% | |
| ATTGGGCCCACGGTTGATCG+TGG | + | chr4_1:79089805-79089824 | None:intergenic | 60.0% | |
| TTAGGAGGGCCTGGTACAGC+AGG | + | chr4_1:79090002-79090021 | None:intergenic | 60.0% | |
| CCAGGCCCTCCTAATGCTTG+GGG | - | chr4_1:79090008-79090027 | Msa0575260:intron | 60.0% | |
| TTCCACCTCGACCTCAGCCA+TGG | - | chr4_1:79090036-79090055 | Msa0575260:intron | 60.0% | |
| AACCATGGCTGAGGTCGAGG+TGG | + | chr4_1:79090041-79090060 | None:intergenic | 60.0% | |
| GGAAACCATGGCTGAGGTCG+AGG | + | chr4_1:79090044-79090063 | None:intergenic | 60.0% | |
| GTTGGAGGCTGGGGAAACCA+TGG | + | chr4_1:79090056-79090075 | None:intergenic | 60.0% | |
| GCTTCTGGCCCAAATACCGG+TGG | - | chr4_1:79090580-79090599 | Msa0575260:intron | 60.0% | |
| ! | CTGTGCTGCTGCTGCGATGG+AGG | + | chr4_1:79086880-79086899 | None:intergenic | 65.0% |
| CTCCATCGCAGCAGCAGCAC+AGG | - | chr4_1:79086878-79086897 | Msa0575260:three_prime_UTR | 65.0% | |
| CCATCGCAGCAGCAGCACAG+GGG | - | chr4_1:79086880-79086899 | Msa0575260:three_prime_UTR | 65.0% | |
| ! | GGCTGAGATTTTCCGGCCGG+CGG | + | chr4_1:79088404-79088423 | None:intergenic | 65.0% |
| CGTGAGAAGGCCTCCACGTC+AGG | - | chr4_1:79088669-79088688 | Msa0575260:intron | 65.0% | |
| CGTGAGAAGGCCTCCACGTC+AGG | - | chr4_1:79088669-79088688 | Msa0575260:intron | 65.0% | |
| CCCCAAGCATTAGGAGGGCC+TGG | + | chr4_1:79090011-79090030 | None:intergenic | 65.0% | |
| GGCTGGGGAAACCATGGCTG+AGG | + | chr4_1:79090050-79090069 | None:intergenic | 65.0% | |
| ! | CCCCTGTGCTGCTGCTGCGA+TGG | + | chr4_1:79086883-79086902 | None:intergenic | 70.0% |
| TCGCAGCAGCAGCACAGGGG+TGG | - | chr4_1:79086883-79086902 | Msa0575260:three_prime_UTR | 70.0% | |
| GGGCCCACGGTTGATCGTGG+AGG | + | chr4_1:79089802-79089821 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 79086808 | 79092358 | 79086808 | ID=Msa0575260;Name=Msa0575260 |
| chr4_1 | mRNA | 79086808 | 79092358 | 79086808 | ID=Msa0575260-mRNA-1;Parent=Msa0575260;Name=Msa0575260-mRNA-1;_AED=0.18;_eAED=0.18;_QI=150|1|1|1|1|1|7|526|373 |
| chr4_1 | exon | 79086808 | 79087405 | 79086808 | ID=Msa0575260-mRNA-1:exon:28203;Parent=Msa0575260-mRNA-1 |
| chr4_1 | exon | 79088314 | 79088367 | 79088314 | ID=Msa0575260-mRNA-1:exon:28202;Parent=Msa0575260-mRNA-1 |
| chr4_1 | exon | 79088461 | 79088615 | 79088461 | ID=Msa0575260-mRNA-1:exon:28201;Parent=Msa0575260-mRNA-1 |
| chr4_1 | exon | 79088756 | 79089174 | 79088756 | ID=Msa0575260-mRNA-1:exon:28200;Parent=Msa0575260-mRNA-1 |
| chr4_1 | exon | 79089333 | 79089459 | 79089333 | ID=Msa0575260-mRNA-1:exon:28199;Parent=Msa0575260-mRNA-1 |
| chr4_1 | exon | 79091107 | 79091207 | 79091107 | ID=Msa0575260-mRNA-1:exon:28198;Parent=Msa0575260-mRNA-1 |
| chr4_1 | exon | 79092015 | 79092358 | 79092015 | ID=Msa0575260-mRNA-1:exon:28197;Parent=Msa0575260-mRNA-1 |
| chr4_1 | five_prime_UTR | 79092209 | 79092358 | 79092209 | ID=Msa0575260-mRNA-1:five_prime_utr;Parent=Msa0575260-mRNA-1 |
| chr4_1 | CDS | 79092015 | 79092208 | 79092015 | ID=Msa0575260-mRNA-1:cds;Parent=Msa0575260-mRNA-1 |
| chr4_1 | CDS | 79091107 | 79091207 | 79091107 | ID=Msa0575260-mRNA-1:cds;Parent=Msa0575260-mRNA-1 |
| chr4_1 | CDS | 79089333 | 79089459 | 79089333 | ID=Msa0575260-mRNA-1:cds;Parent=Msa0575260-mRNA-1 |
| chr4_1 | CDS | 79088756 | 79089174 | 79088756 | ID=Msa0575260-mRNA-1:cds;Parent=Msa0575260-mRNA-1 |
| chr4_1 | CDS | 79088461 | 79088615 | 79088461 | ID=Msa0575260-mRNA-1:cds;Parent=Msa0575260-mRNA-1 |
| chr4_1 | CDS | 79088314 | 79088367 | 79088314 | ID=Msa0575260-mRNA-1:cds;Parent=Msa0575260-mRNA-1 |
| chr4_1 | CDS | 79087334 | 79087405 | 79087334 | ID=Msa0575260-mRNA-1:cds;Parent=Msa0575260-mRNA-1 |
| chr4_1 | three_prime_UTR | 79086808 | 79087333 | 79086808 | ID=Msa0575260-mRNA-1:three_prime_utr;Parent=Msa0575260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
