AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0575600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575600 MtrunA17_Chr8g0392781 81.006 358 33 2 1 323 1 358 0.0 573
Msa0575600 MtrunA17_Chr6g0477171 89.055 201 22 0 59 259 45 245 6.33e-129 368
Msa0575600 MtrunA17_Chr7g0224601 63.158 304 108 2 11 310 1 304 2.69e-125 361
Msa0575600 MtrunA17_Chr3g0099561 63.082 279 103 0 38 316 26 304 8.65e-119 344
Msa0575600 MtrunA17_Chr1g0177151 58.366 257 103 1 1 257 1 253 6.18e-102 300
Msa0575600 MtrunA17_Chr5g0444621 51.373 255 116 2 27 279 13 261 7.83e-77 236
Msa0575600 MtrunA17_Chr3g0083811 50.862 116 57 0 186 301 1 116 2.80e-35 124
Msa0575600 MtrunA17_Chr3g0083821 69.048 84 26 0 81 164 37 120 5.51e-32 116
Msa0575600 MtrunA17_Chr6g0477181 88.136 59 7 0 1 59 1 59 2.78e-29 108
Msa0575600 MtrunA17_Chr5g0444631 67.925 53 17 0 112 164 4 56 2.96e-18 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575600 AT3G20800.1 59.032 310 119 2 6 310 5 311 5.10e-120 348
Msa0575600 AT5G12980.1 56.554 267 116 0 32 298 29 295 9.75e-103 304
Msa0575600 AT2G32550.3 32.900 231 143 6 67 287 42 270 7.57e-28 110
Msa0575600 AT2G32550.2 32.900 231 143 6 67 287 81 309 1.11e-27 110
Msa0575600 AT2G32550.1 32.500 200 128 4 104 298 29 226 7.27e-25 100

Find 52 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCACAGTTTGAGTATTTA+AGG 0.083275 4_1:+79518398 Msa0575600:CDS
CAGAACTTGCATCTTTATTA+TGG 0.166706 4_1:+79517320 Msa0575600:CDS
TCTTTATTATGGAATTCTTT+TGG 0.317731 4_1:+79517331 Msa0575600:CDS
CATAATAAAGATGCAAGTTC+TGG 0.318259 4_1:-79517319 None:intergenic
AAGGTAACCCATGACTTCTT+TGG 0.326447 4_1:-79519104 None:intergenic
GAATTATCTCGCTTAAAATA+AGG 0.331775 4_1:-79519123 None:intergenic
AGGAGAAAACAATGATATTA+TGG 0.339445 4_1:+79520752 Msa0575600:CDS
TTTACCCACTTCCATGTTGT+TGG 0.346974 4_1:-79520678 None:intergenic
GTTCCATGCAAGCCATCGTT+TGG 0.360758 4_1:-79515691 None:intergenic
TTACCCACTTCCATGTTGTT+GGG 0.381391 4_1:-79520677 None:intergenic
TAACGTTCTTGCACTACTTC+AGG 0.385082 4_1:+79517822 Msa0575600:CDS
TGCTTAAGCAACATGGAGAT+TGG 0.389189 4_1:+79519151 Msa0575600:CDS
CACCTGCTACTAAAGGTTCC+TGG 0.391093 4_1:-79520728 None:intergenic
TTTGCAAGTCTTGGAGTCAT+TGG 0.412772 4_1:+79518421 Msa0575600:CDS
TTCCATGCAAGCCATCGTTT+GGG 0.414939 4_1:-79515690 None:intergenic
TGCCCAAACGATGGCTTGCA+TGG 0.424700 4_1:+79515688 Msa0575600:CDS
TATTTAAGGTTTGCAAGTCT+TGG 0.428903 4_1:+79518412 Msa0575600:CDS
TTTATTGGATGATGGTGGTT+TGG 0.429087 4_1:+79519397 Msa0575600:CDS
GAAGTGGGTAAAGCACTTGC+AGG 0.446999 4_1:+79520689 Msa0575600:CDS
TTCTTCATTGTGAGCGAATG+AGG 0.447112 4_1:-79515614 None:intergenic
TCTCCTCCACCTGCTACTAA+AGG 0.452997 4_1:-79520735 None:intergenic
CTCGTTTGTCTGATGATCGC+TGG 0.465281 4_1:+79519540 Msa0575600:CDS
GCAAGCCATCGTTTGGGCAG+TGG 0.471268 4_1:-79515684 None:intergenic
ACAAAGATGTTGTTCTTGAA+TGG 0.471978 4_1:+79518073 Msa0575600:CDS
TTCATGTAATACCTTCACTA+AGG 0.484633 4_1:-79518446 None:intergenic
TCTTCGTCTGTAGCTCCTCT+TGG 0.485469 4_1:+79515641 Msa0575600:CDS
ATTATGGAGTCGTCAACATC+AGG 0.492978 4_1:+79520768 Msa0575600:CDS
AACCAGGAACCTTTAGTAGC+AGG 0.521492 4_1:+79520726 Msa0575600:CDS
CGCTCTTCGTGTGCTCTCCA+AGG 0.522456 4_1:+79515754 Msa0575600:CDS
TCCATTGTGCTTAAGCAACA+TGG 0.523480 4_1:+79519144 Msa0575600:CDS
GGTTAACACCAAAGAAGTCA+TGG 0.557731 4_1:+79519096 Msa0575600:intron
AGAGTTTGCTAATGTAATGC+CGG 0.558847 4_1:-79519682 None:intergenic
AAGACCCAACAACATGGAAG+TGG 0.564589 4_1:+79520673 Msa0575600:CDS
AACCTTAAATACTCAAACTG+TGG 0.565441 4_1:-79518400 None:intergenic
GGAGAATGTGAGAAAGAACC+AGG 0.585783 4_1:+79520710 Msa0575600:CDS
AGTCATTGGCGCCTTAGTGA+AGG 0.595063 4_1:+79518435 Msa0575600:CDS
GAACCTTTAGTAGCAGGTGG+AGG 0.599018 4_1:+79520732 Msa0575600:CDS
TCCATGTTGCTTAAGCACAA+TGG 0.605260 4_1:-79519145 None:intergenic
CAGGAACCTTTAGTAGCAGG+TGG 0.622718 4_1:+79520729 Msa0575600:CDS
ATGGTGTCTCTAAACACACT+AGG 0.625901 4_1:-79519708 None:intergenic
GTTAACACCAAAGAAGTCAT+GGG 0.626974 4_1:+79519097 Msa0575600:CDS
TTCAGGAAGACCCAACAACA+TGG 0.633339 4_1:+79520667 Msa0575600:intron
TCAGACAAACGAGCATAGCA+AGG 0.637885 4_1:-79519530 None:intergenic
AACTTTATAAGACGAGGTGT+AGG 0.638935 4_1:-79519500 None:intergenic
AAGAACCACTGCCCAAACGA+TGG 0.643808 4_1:+79515679 Msa0575600:CDS
AGGAAGGGATACAAATACAA+AGG 0.647299 4_1:-79518358 None:intergenic
AGACCCAACAACATGGAAGT+GGG 0.650091 4_1:+79520674 Msa0575600:CDS
ATTATAAACTTTATAAGACG+AGG 0.663846 4_1:-79519506 None:intergenic
GATTGTGCTAGAGTAAGAGT+CGG 0.683303 4_1:-79517787 None:intergenic
GATTGCTGAGTTCAATAACA+AGG 0.688379 4_1:-79515715 None:intergenic
GATTGAGTAGAAGCACCAAG+AGG 0.698261 4_1:-79515656 None:intergenic
TGTGCTAGAGTAAGAGTCGG+TGG 0.715335 4_1:-79517784 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAAATAATATAATTT+GGG - chr4_1:79518653-79518672 None:intergenic 0.0%
!!! AATTTTAAAATAATATAATT+TGG - chr4_1:79518654-79518673 None:intergenic 0.0%
!! ATTAATTATATATATATATA+TGG + chr4_1:79520020-79520039 Msa0575600:intron 0.0%
!! AAAAAAATTTAAAGATACAT+CGG - chr4_1:79516168-79516187 None:intergenic 10.0%
!! AAAAAAAAATAAAGTATAAG+TGG - chr4_1:79516322-79516341 None:intergenic 10.0%
!!! CTTTATTTTTTTTTAAAACT+CGG + chr4_1:79516328-79516347 Msa0575600:intron 10.0%
!!! TCTTTTTATAAAAATATCTA+AGG - chr4_1:79516602-79516621 None:intergenic 10.0%
!!! TGACATTTTATATTATAATT+TGG + chr4_1:79517176-79517195 Msa0575600:intron 10.0%
!!! ATTTTATATTATAATTTGGT+TGG + chr4_1:79517180-79517199 Msa0575600:intron 10.0%
!! TGAATGAAATTATATATTAT+TGG + chr4_1:79517388-79517407 Msa0575600:intron 10.0%
!! AAAACATATAAACATAATTT+GGG - chr4_1:79517476-79517495 None:intergenic 10.0%
!!! ATTGATTTTTAGTTATATTT+GGG - chr4_1:79517913-79517932 None:intergenic 10.0%
!!! TTTTAAATTTGAGTATATTA+TGG + chr4_1:79518173-79518192 Msa0575600:intron 10.0%
!! TTAAATACAAAATATAATCA+TGG + chr4_1:79518217-79518236 Msa0575600:intron 10.0%
!! TAAATACAAAATATAATCAT+GGG + chr4_1:79518218-79518237 Msa0575600:intron 10.0%
!! AAATTTGTATCAATAAATTA+TGG + chr4_1:79518552-79518571 Msa0575600:intron 10.0%
!!! TATAATGCATAAAATTTTAT+TGG + chr4_1:79519382-79519401 Msa0575600:CDS 10.0%
!!! TTTTGATATATAAAACAATA+TGG - chr4_1:79519938-79519957 None:intergenic 10.0%
!! TCTCATATATATATATATAT+GGG - chr4_1:79520444-79520463 None:intergenic 10.0%
!! ATCTCATATATATATATATA+TGG - chr4_1:79520445-79520464 None:intergenic 10.0%
!! ATACTTTACTTAATTATACT+TGG + chr4_1:79516543-79516562 Msa0575600:intron 15.0%
!!! CAAAATTATCTCTTTTTTTT+TGG - chr4_1:79517261-79517280 None:intergenic 15.0%
!! TAATTTGGGAAAAAATTATA+TGG - chr4_1:79517462-79517481 None:intergenic 15.0%
!! GAAAACATATAAACATAATT+TGG - chr4_1:79517477-79517496 None:intergenic 15.0%
!!! TTTTACAATTTAAAAAAACG+AGG + chr4_1:79517531-79517550 Msa0575600:intron 15.0%
!!! GTGTTTTAAAAATGATTTAT+TGG + chr4_1:79517689-79517708 Msa0575600:intron 15.0%
!!! TTGATTTTTAGTTATATTTG+GGG - chr4_1:79517912-79517931 None:intergenic 15.0%
!!! GATTGATTTTTAGTTATATT+TGG - chr4_1:79517914-79517933 None:intergenic 15.0%
!! AAATACAAAATATAATCATG+GGG + chr4_1:79518219-79518238 Msa0575600:intron 15.0%
!!! AGAAAAAAAATCTAAAATCA+TGG - chr4_1:79519017-79519036 None:intergenic 15.0%
!!! TTATTTTTTAAAGAGCATTT+TGG + chr4_1:79519207-79519226 Msa0575600:intron 15.0%
!!! TAATATGAAAGAAGTTTTAT+TGG - chr4_1:79519654-79519673 None:intergenic 15.0%
!! TTATGAATCAAATTTGTATA+AGG - chr4_1:79519775-79519794 None:intergenic 15.0%
!! TAACCCATATATATATATAT+AGG + chr4_1:79520223-79520242 Msa0575600:intron 15.0%
!! AACCCATATATATATATATA+GGG + chr4_1:79520224-79520243 Msa0575600:intron 15.0%
!! AACCCTATATATATATATAT+GGG - chr4_1:79520229-79520248 None:intergenic 15.0%
!! TAACCCTATATATATATATA+TGG - chr4_1:79520230-79520249 None:intergenic 15.0%
!! TTTATACTAAATTAATGCTA+AGG + chr4_1:79520520-79520539 Msa0575600:intron 15.0%
!!! CATTATTTGATATTATTTTC+AGG + chr4_1:79520650-79520669 Msa0575600:intron 15.0%
!! AACCAATTTCTGATAAAATT+AGG + chr4_1:79516052-79516071 Msa0575600:intron 20.0%
!!! ATCCTAATTTTATCAGAAAT+TGG - chr4_1:79516057-79516076 None:intergenic 20.0%
!! AAAAATAAAGTATAAGTGGA+TGG - chr4_1:79516318-79516337 None:intergenic 20.0%
!!! TAATATCTTGTTATGTGTTA+TGG + chr4_1:79516694-79516713 Msa0575600:intron 20.0%
!! AAACAAGTAATTAACATATC+AGG - chr4_1:79517044-79517063 None:intergenic 20.0%
!! CAATTAAGAGATAATTTACA+AGG + chr4_1:79517230-79517249 Msa0575600:intron 20.0%
!!! TTCTATCTTTTATATTTCAG+AGG + chr4_1:79517284-79517303 Msa0575600:intron 20.0%
!!! TCTTTATTATGGAATTCTTT+TGG + chr4_1:79517331-79517350 Msa0575600:CDS 20.0%
!!! ATTATATATTATTGGCTAGT+TGG + chr4_1:79517396-79517415 Msa0575600:intron 20.0%
!! CTTAAAAGTTAAAACTATCA+AGG - chr4_1:79517662-79517681 None:intergenic 20.0%
!!! GTTTTAACTTTTAAGCATTT+AGG + chr4_1:79517667-79517686 Msa0575600:intron 20.0%
!!! AATGTTTTTTTTTCTTCTTC+AGG + chr4_1:79517732-79517751 Msa0575600:intron 20.0%
!!! TGATTTTTAGTTATATTTGG+GGG - chr4_1:79517911-79517930 None:intergenic 20.0%
!! ATAGAAAAGTTTATCATTTG+TGG - chr4_1:79517960-79517979 None:intergenic 20.0%
!! TAAATTTGAGTATATTATGG+AGG + chr4_1:79518176-79518195 Msa0575600:intron 20.0%
!! AATACAAAATATAATCATGG+GGG + chr4_1:79518220-79518239 Msa0575600:intron 20.0%
!!! TCTTTTAATGAGAAAAATCT+AGG - chr4_1:79518266-79518285 None:intergenic 20.0%
!! GAAAATGTAAGTGTAAATAA+TGG - chr4_1:79518320-79518339 None:intergenic 20.0%
!! AAATAATATAATTTGGGCTT+TGG - chr4_1:79518647-79518666 None:intergenic 20.0%
!!! TAAAAGTGATTAGTGTTTTT+TGG - chr4_1:79518782-79518801 None:intergenic 20.0%
!!! ATATCAACTTTTTATAAGAC+TGG - chr4_1:79518906-79518925 None:intergenic 20.0%
!! CAAAAGGAAATTATTACAAA+TGG - chr4_1:79519057-79519076 None:intergenic 20.0%
!!! CATAAAATTTTATTGGATGA+TGG + chr4_1:79519389-79519408 Msa0575600:CDS 20.0%
!! ATTATAAACTTTATAAGACG+AGG - chr4_1:79519509-79519528 None:intergenic 20.0%
!! ACGAAATTGATTAAGAAAAA+TGG - chr4_1:79519730-79519749 None:intergenic 20.0%
!!! TATATATATGGTTTTGTTAC+AGG + chr4_1:79520032-79520051 Msa0575600:intron 20.0%
!! ATACAATGTTAATACTTGTA+TGG + chr4_1:79520479-79520498 Msa0575600:intron 20.0%
!! ATAATGCATCTTATAACTTT+AGG + chr4_1:79520545-79520564 Msa0575600:intron 20.0%
! TTTAAGTGTTAGATTACCTA+TGG - chr4_1:79516222-79516241 None:intergenic 25.0%
! AGAGAAACAATAGTGATAAA+AGG + chr4_1:79516902-79516921 Msa0575600:intron 25.0%
! AGAGAATAGACTAACAAAAT+TGG + chr4_1:79516937-79516956 Msa0575600:intron 25.0%
! TAGTGTGACTTCAAAAAATT+AGG + chr4_1:79517016-79517035 Msa0575600:intron 25.0%
!! TATTATTGCAGTACTTTTAC+AGG + chr4_1:79517354-79517373 Msa0575600:CDS 25.0%
! TTGAATCTTGTGTTTAGTAT+AGG + chr4_1:79517870-79517889 Msa0575600:intron 25.0%
!!! ACATAAGAAAAAAGTGTTAG+AGG - chr4_1:79518021-79518040 None:intergenic 25.0%
!!! TTGTCTTTTGTTTTAAGGAA+GGG - chr4_1:79518376-79518395 None:intergenic 25.0%
! TTATGTAAATGACACATTCA+AGG - chr4_1:79518533-79518552 None:intergenic 25.0%
!!! GAGTTACAATATAACTTGTT+AGG + chr4_1:79518937-79518956 Msa0575600:intron 25.0%
!! AATTTCCTTTTGTTGATACT+TGG + chr4_1:79519065-79519084 Msa0575600:intron 25.0%
! GAATTATCTCGCTTAAAATA+AGG - chr4_1:79519126-79519145 None:intergenic 25.0%
! AATCACATACTCAACAAAAA+TGG - chr4_1:79519281-79519300 None:intergenic 25.0%
!!! AAAATTTTATTGGATGATGG+TGG + chr4_1:79519392-79519411 Msa0575600:CDS 25.0%
! AAAATGCATATTCAAGATGA+TGG - chr4_1:79519580-79519599 None:intergenic 25.0%
! AACTTCTTTCATATTAAAGC+AGG + chr4_1:79519658-79519677 Msa0575600:intron 25.0%
! ACTTCTTTCATATTAAAGCA+GGG + chr4_1:79519659-79519678 Msa0575600:intron 25.0%
! TTTGTATAAGGTAATGTGAA+AGG - chr4_1:79519763-79519782 None:intergenic 25.0%
!! ATAACTTGTGTGATATAGAT+AGG + chr4_1:79519791-79519810 Msa0575600:intron 25.0%
!! TTTTATCAAGTTACACCTTA+AGG + chr4_1:79520073-79520092 Msa0575600:intron 25.0%
!!! AACTTTAGGATAATAACTAG+AGG + chr4_1:79520559-79520578 Msa0575600:intron 25.0%
! AGGAGAAAACAATGATATTA+TGG + chr4_1:79520752-79520771 Msa0575600:CDS 25.0%
TAATCGAAGATAGATTCGTA+AGG - chr4_1:79515781-79515800 None:intergenic 30.0%
TTGTTAGCCATTCTAAATAG+TGG + chr4_1:79515914-79515933 Msa0575600:intron 30.0%
TGTTAGCCATTCTAAATAGT+GGG + chr4_1:79515915-79515934 Msa0575600:intron 30.0%
TTCTATCCCACTATTTAGAA+TGG - chr4_1:79515924-79515943 None:intergenic 30.0%
TAGGATTATTATCTGACACA+TGG + chr4_1:79516071-79516090 Msa0575600:intron 30.0%
TTACCTATGGATTTAGTGAA+AGG - chr4_1:79516209-79516228 None:intergenic 30.0%
CGTGTATCAATTCAAGTATA+GGG - chr4_1:79516284-79516303 None:intergenic 30.0%
ACGTGTATCAATTCAAGTAT+AGG - chr4_1:79516285-79516304 None:intergenic 30.0%
AAGTATAAGAACACCCATTT+GGG - chr4_1:79516529-79516548 None:intergenic 30.0%
AAAGTATAAGAACACCCATT+TGG - chr4_1:79516530-79516549 None:intergenic 30.0%
TGACAAACATACGTTAAAAC+TGG - chr4_1:79516656-79516675 None:intergenic 30.0%
GAAAGAGAGATTACATGAAA+TGG + chr4_1:79516831-79516850 Msa0575600:intron 30.0%
!! GAGTTTGATACTTAAGTTGA+TGG + chr4_1:79516870-79516889 Msa0575600:intron 30.0%
CATAATAAAGATGCAAGTTC+TGG - chr4_1:79517322-79517341 None:intergenic 30.0%
CAGAACTTGCATCTTTATTA+TGG + chr4_1:79517320-79517339 Msa0575600:CDS 30.0%
! TATGTTTTCACTATAGTGTG+TGG + chr4_1:79518036-79518055 Msa0575600:intron 30.0%
ACAAAGATGTTGTTCTTGAA+TGG + chr4_1:79518073-79518092 Msa0575600:CDS 30.0%
!!! CTTGTCTTTTGTTTTAAGGA+AGG - chr4_1:79518377-79518396 None:intergenic 30.0%
!!! GTGACTTGTCTTTTGTTTTA+AGG - chr4_1:79518381-79518400 None:intergenic 30.0%
AACCTTAAATACTCAAACTG+TGG - chr4_1:79518403-79518422 None:intergenic 30.0%
! TATTTAAGGTTTGCAAGTCT+TGG + chr4_1:79518412-79518431 Msa0575600:CDS 30.0%
TTCATGTAATACCTTCACTA+AGG - chr4_1:79518449-79518468 None:intergenic 30.0%
!! TGTGTTATTCTTAGTTTTCG+TGG - chr4_1:79518605-79518624 None:intergenic 30.0%
!!! TTGTAGTTTTATCATGCTCT+TGG + chr4_1:79518846-79518865 Msa0575600:intron 30.0%
GAATACCAAGTATCAACAAA+AGG - chr4_1:79519073-79519092 None:intergenic 30.0%
TAAGTTGCACACATTGTTAA+GGG - chr4_1:79519603-79519622 None:intergenic 30.0%
ATAAGTTGCACACATTGTTA+AGG - chr4_1:79519604-79519623 None:intergenic 30.0%
! TCAGCAACAACAATATCTTT+TGG + chr4_1:79519845-79519864 Msa0575600:intron 30.0%
! AATTAGGCGAAAACACTTTT+TGG - chr4_1:79519978-79519997 None:intergenic 30.0%
ATTGGGAGACGTATAAAATT+AGG - chr4_1:79519994-79520013 None:intergenic 30.0%
AAAGTGAAAATCACACCTTA+AGG - chr4_1:79520091-79520110 None:intergenic 30.0%
ACACCTTCATAAAAGTAAGT+TGG + chr4_1:79520133-79520152 Msa0575600:intron 30.0%
!! ACACCAACTTACTTTTATGA+AGG - chr4_1:79520139-79520158 None:intergenic 30.0%
ATAAAAGACACCTTCACAAA+AGG + chr4_1:79520188-79520207 Msa0575600:intron 30.0%
ATAAAAGACACCTTCACAAA+AGG - chr4_1:79520188-79520207 None:intergenic 30.0%
!!! ACACCAACTACTTTTTATGA+AGG + chr4_1:79520314-79520333 Msa0575600:intron 30.0%
ACACCTTCATAAAAAGTAGT+TGG - chr4_1:79520320-79520339 None:intergenic 30.0%
!!! CATCACACTACTTTTTATGA+AGG + chr4_1:79520403-79520422 Msa0575600:intron 30.0%
!! TGAGAATCGACTATTTCTAA+AGG - chr4_1:79520614-79520633 None:intergenic 30.0%
GATTGCTGAGTTCAATAACA+AGG - chr4_1:79515718-79515737 None:intergenic 35.0%
CTTTCAAGAGGACACAAATA+GGG - chr4_1:79516139-79516158 None:intergenic 35.0%
ACTTTCAAGAGGACACAAAT+AGG - chr4_1:79516140-79516159 None:intergenic 35.0%
ATGCCTTTCACTAAATCCAT+AGG + chr4_1:79516203-79516222 Msa0575600:intron 35.0%
! AGAGGAGCACATTTAGTTTA+GGG - chr4_1:79516257-79516276 None:intergenic 35.0%
AGTATAAGAACACCCATTTG+GGG - chr4_1:79516528-79516547 None:intergenic 35.0%
! CTCTGAGAGGTATAAAAATG+AGG + chr4_1:79516805-79516824 Msa0575600:intron 35.0%
AGTCAACCAATCTAAGTTGT+TGG + chr4_1:79516975-79516994 Msa0575600:intron 35.0%
AACCAATCTAAGTTGTTGGA+TGG + chr4_1:79516979-79516998 Msa0575600:intron 35.0%
TTCCATCCAACAACTTAGAT+TGG - chr4_1:79516984-79517003 None:intergenic 35.0%
AAAAACGAGGCATGATTATG+AGG + chr4_1:79517544-79517563 Msa0575600:intron 35.0%
AAAACGAGGCATGATTATGA+GGG + chr4_1:79517545-79517564 Msa0575600:intron 35.0%
AACATTACTTAGTGCGTTCA+GGG - chr4_1:79517718-79517737 None:intergenic 35.0%
AAACATTACTTAGTGCGTTC+AGG - chr4_1:79517719-79517738 None:intergenic 35.0%
AGGAAGGGATACAAATACAA+AGG - chr4_1:79518361-79518380 None:intergenic 35.0%
CACCACAGTTTGAGTATTTA+AGG + chr4_1:79518398-79518417 Msa0575600:CDS 35.0%
! TTTTCGTGGAATCATTTTCG+TGG - chr4_1:79518591-79518610 None:intergenic 35.0%
! ATCGTGGTTTTTGTGGAATT+AGG + chr4_1:79518711-79518730 Msa0575600:intron 35.0%
CTAGTTAAGAGCCAGATAAT+TGG + chr4_1:79518818-79518837 Msa0575600:intron 35.0%
CTACAAGTCAACCAATTATC+TGG - chr4_1:79518832-79518851 None:intergenic 35.0%
TGTTGATACTTGGTATTCAC+AGG + chr4_1:79519075-79519094 Msa0575600:intron 35.0%
GTTAACACCAAAGAAGTCAT+GGG + chr4_1:79519097-79519116 Msa0575600:CDS 35.0%
!! TTTATTGGATGATGGTGGTT+TGG + chr4_1:79519397-79519416 Msa0575600:CDS 35.0%
AACTTTATAAGACGAGGTGT+AGG - chr4_1:79519503-79519522 None:intergenic 35.0%
!! AGAGTTTGCTAATGTAATGC+CGG - chr4_1:79519685-79519704 None:intergenic 35.0%
TGATAAAAGACACCACCAAA+GGG - chr4_1:79520061-79520080 None:intergenic 35.0%
TTGATAAAAGACACCACCAA+AGG - chr4_1:79520062-79520081 None:intergenic 35.0%
! ATAGAAGACACCTTTTGTGA+AGG - chr4_1:79520252-79520271 None:intergenic 35.0%
! ATAGAAGACACCTTTTGTGA+AGG + chr4_1:79520252-79520271 Msa0575600:intron 35.0%
AAAGTGAAAATCACACCTTG+AGG + chr4_1:79520363-79520382 Msa0575600:intron 35.0%
! TTTTATCAAGTCACACCTCA+AGG - chr4_1:79520381-79520400 None:intergenic 35.0%
TTCTTCATTGTGAGCGAATG+AGG - chr4_1:79515617-79515636 None:intergenic 40.0%
AGATAGATTCGTAAGGACCT+TGG - chr4_1:79515774-79515793 None:intergenic 40.0%
CATCGGTAGAAACTTTCAAG+AGG - chr4_1:79516151-79516170 None:intergenic 40.0%
! GAGAGGAGCACATTTAGTTT+AGG - chr4_1:79516258-79516277 None:intergenic 40.0%
! CTTTGCTATGGCTTAGAACA+GGG - chr4_1:79516405-79516424 None:intergenic 40.0%
! ATTACCTCTGGTGCCAATTT+CGG - chr4_1:79516447-79516466 None:intergenic 40.0%
GATTGTGCTAGAGTAAGAGT+CGG - chr4_1:79517790-79517809 None:intergenic 40.0%
TAACGTTCTTGCACTACTTC+AGG + chr4_1:79517822-79517841 Msa0575600:CDS 40.0%
TTTGCAAGTCTTGGAGTCAT+TGG + chr4_1:79518421-79518440 Msa0575600:CDS 40.0%
! TTTTGTGGAATTAGGCTTCG+TGG + chr4_1:79518719-79518738 Msa0575600:intron 40.0%
GGTTAACACCAAAGAAGTCA+TGG + chr4_1:79519096-79519115 Msa0575600:intron 40.0%
AAGGTAACCCATGACTTCTT+TGG - chr4_1:79519107-79519126 None:intergenic 40.0%
TCCATTGTGCTTAAGCAACA+TGG + chr4_1:79519144-79519163 Msa0575600:CDS 40.0%
! TCCATGTTGCTTAAGCACAA+TGG - chr4_1:79519148-79519167 None:intergenic 40.0%
TGCTTAAGCAACATGGAGAT+TGG + chr4_1:79519151-79519170 Msa0575600:CDS 40.0%
! TTTTGCAGTACGTCGTGTTT+TGG + chr4_1:79519448-79519467 Msa0575600:CDS 40.0%
CTTTCATATTAAAGCAGGGC+CGG + chr4_1:79519663-79519682 Msa0575600:intron 40.0%
ATGGTGTCTCTAAACACACT+AGG - chr4_1:79519711-79519730 None:intergenic 40.0%
CATGCAGTACTAAAATTCGC+AGG - chr4_1:79519905-79519924 None:intergenic 40.0%
!! CTGCGAATTTTAGTACTGCA+TGG + chr4_1:79519903-79519922 Msa0575600:intron 40.0%
!! CGAATTTTAGTACTGCATGG+TGG + chr4_1:79519906-79519925 Msa0575600:intron 40.0%
! TTTTAGTACTGCATGGTGGT+TGG + chr4_1:79519910-79519929 Msa0575600:intron 40.0%
TTACCCACTTCCATGTTGTT+GGG - chr4_1:79520680-79520699 None:intergenic 40.0%
TTTACCCACTTCCATGTTGT+TGG - chr4_1:79520681-79520700 None:intergenic 40.0%
ATTATGGAGTCGTCAACATC+AGG + chr4_1:79520768-79520787 Msa0575600:CDS 40.0%
!! GATTGAGTAGAAGCACCAAG+AGG - chr4_1:79515659-79515678 None:intergenic 45.0%
TTCCATGCAAGCCATCGTTT+GGG - chr4_1:79515693-79515712 None:intergenic 45.0%
!! AGAGCGTTTTCTCGAAGATC+AGG - chr4_1:79515740-79515759 None:intergenic 45.0%
TGTGATCCATGTTGTGACGT+TGG + chr4_1:79515948-79515967 Msa0575600:intron 45.0%
GATTTGCCAACGTCACAACA+TGG - chr4_1:79515957-79515976 None:intergenic 45.0%
TGTTGTGACGTTGGCAAATC+AGG + chr4_1:79515957-79515976 Msa0575600:intron 45.0%
ATTCAAGTATAGGGCGAGAG+AGG - chr4_1:79516275-79516294 None:intergenic 45.0%
! GCTTTGCTATGGCTTAGAAC+AGG - chr4_1:79516406-79516425 None:intergenic 45.0%
AGCCATAGCAAAGCTCTGTA+TGG + chr4_1:79516412-79516431 Msa0575600:intron 45.0%
GTCCATACAGAGCTTTGCTA+TGG - chr4_1:79516417-79516436 None:intergenic 45.0%
!! TAGTGGTTGGTTTGGGATCT+TGG - chr4_1:79516499-79516518 None:intergenic 45.0%
AAGATCCCAAACCAACCACT+AGG + chr4_1:79516498-79516517 Msa0575600:intron 45.0%
!! GTTGACCTAGTGGTTGGTTT+GGG - chr4_1:79516506-79516525 None:intergenic 45.0%
TCACACTTCATGACTCTGAG+AGG + chr4_1:79516792-79516811 Msa0575600:intron 45.0%
CTTTGGCAGCAATCATGGTA+GGG - chr4_1:79518630-79518649 None:intergenic 45.0%
CACGATGAGACACAATGCAA+CGG - chr4_1:79518697-79518716 None:intergenic 45.0%
! GTGTCTCATCGTGGTTTTTG+TGG + chr4_1:79518704-79518723 Msa0575600:intron 45.0%
AATTAGGCTTCGTGGCATCT+AGG + chr4_1:79518727-79518746 Msa0575600:intron 45.0%
TCAGACAAACGAGCATAGCA+AGG - chr4_1:79519533-79519552 None:intergenic 45.0%
TTTGTCTGATGATCGCTGGT+TGG + chr4_1:79519544-79519563 Msa0575600:intron 45.0%
! TTTTGTTACAGGCCACCCTT+TGG + chr4_1:79520043-79520062 Msa0575600:intron 45.0%
TAAAAGACACCACCAAAGGG+TGG - chr4_1:79520058-79520077 None:intergenic 45.0%
TTCAGGAAGACCCAACAACA+TGG + chr4_1:79520667-79520686 Msa0575600:intron 45.0%
AAGACCCAACAACATGGAAG+TGG + chr4_1:79520673-79520692 Msa0575600:CDS 45.0%
AGACCCAACAACATGGAAGT+GGG + chr4_1:79520674-79520693 Msa0575600:CDS 45.0%
GGAGAATGTGAGAAAGAACC+AGG + chr4_1:79520710-79520729 Msa0575600:CDS 45.0%
AACCAGGAACCTTTAGTAGC+AGG + chr4_1:79520726-79520745 Msa0575600:CDS 45.0%
!! ATATAATTAATAATAACATT+GGG - chr4_1:79520011-79520030 None:intergenic 5.0%
!! TATATAATTAATAATAACAT+TGG - chr4_1:79520012-79520031 None:intergenic 5.0%
TCTTCGTCTGTAGCTCCTCT+TGG + chr4_1:79515641-79515660 Msa0575600:CDS 50.0%
AAGAACCACTGCCCAAACGA+TGG + chr4_1:79515679-79515698 Msa0575600:CDS 50.0%
GTTCCATGCAAGCCATCGTT+TGG - chr4_1:79515694-79515713 None:intergenic 50.0%
AAAACTCGGTACCCGATCCA+AGG + chr4_1:79516342-79516361 Msa0575600:intron 50.0%
TGGTCATTCGGTCCTTGGAT+CGG - chr4_1:79516357-79516376 None:intergenic 50.0%
!! GAGCAGTGGGATTGGTCATT+CGG - chr4_1:79516369-79516388 None:intergenic 50.0%
ATGGACTTGCCCACCGAAAT+TGG + chr4_1:79516431-79516450 Msa0575600:intron 50.0%
GTCTCAGGTTCGATTACCTC+TGG - chr4_1:79516459-79516478 None:intergenic 50.0%
ATCGAACCTGAGACCTTGAG+AGG + chr4_1:79516465-79516484 Msa0575600:intron 50.0%
! GGTTGACCTAGTGGTTGGTT+TGG - chr4_1:79516507-79516526 None:intergenic 50.0%
! TTTGGGGTTGACCTAGTGGT+TGG - chr4_1:79516512-79516531 None:intergenic 50.0%
ACCACTAGGTCAACCCCAAA+TGG + chr4_1:79516512-79516531 Msa0575600:intron 50.0%
CCACTAGGTCAACCCCAAAT+GGG + chr4_1:79516513-79516532 Msa0575600:intron 50.0%
TGTGCTAGAGTAAGAGTCGG+TGG - chr4_1:79517787-79517806 None:intergenic 50.0%
AGTCATTGGCGCCTTAGTGA+AGG + chr4_1:79518435-79518454 Msa0575600:CDS 50.0%
GCTTTGGCAGCAATCATGGT+AGG - chr4_1:79518631-79518650 None:intergenic 50.0%
! TTGGGCTTTGGCAGCAATCA+TGG - chr4_1:79518635-79518654 None:intergenic 50.0%
CGTTGCATTGTGTCTCATCG+TGG + chr4_1:79518695-79518714 Msa0575600:intron 50.0%
CTCGTTTGTCTGATGATCGC+TGG + chr4_1:79519540-79519559 Msa0575600:CDS 50.0%
! GAAGTGGGTAAAGCACTTGC+AGG + chr4_1:79520689-79520708 Msa0575600:CDS 50.0%
CACCTGCTACTAAAGGTTCC+TGG - chr4_1:79520731-79520750 None:intergenic 50.0%
CAGGAACCTTTAGTAGCAGG+TGG + chr4_1:79520729-79520748 Msa0575600:CDS 50.0%
GAACCTTTAGTAGCAGGTGG+AGG + chr4_1:79520732-79520751 Msa0575600:CDS 50.0%
TCTCCTCCACCTGCTACTAA+AGG - chr4_1:79520738-79520757 None:intergenic 50.0%
! TGCCCAAACGATGGCTTGCA+TGG + chr4_1:79515688-79515707 Msa0575600:CDS 55.0%
GGTCATTCGGTCCTTGGATC+GGG - chr4_1:79516356-79516375 None:intergenic 55.0%
!! GGGATTGGTCATTCGGTCCT+TGG - chr4_1:79516362-79516381 None:intergenic 55.0%
CCAATCCCACTGCTCACTTG+CGG + chr4_1:79516374-79516393 Msa0575600:intron 55.0%
CAATCCCACTGCTCACTTGC+GGG + chr4_1:79516375-79516394 Msa0575600:intron 55.0%
AATCCCACTGCTCACTTGCG+GGG + chr4_1:79516376-79516395 Msa0575600:intron 55.0%
! CCTCTGGTGCCAATTTCGGT+GGG - chr4_1:79516443-79516462 None:intergenic 55.0%
! ACCTCTGGTGCCAATTTCGG+TGG - chr4_1:79516444-79516463 None:intergenic 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG - chr4_1:79516474-79516493 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - chr4_1:79516481-79516500 None:intergenic 55.0%
! CCCATTTGGGGTTGACCTAG+TGG - chr4_1:79516516-79516535 None:intergenic 55.0%
TGTTACAGGCCACCCTTTGG+TGG + chr4_1:79520046-79520065 Msa0575600:intron 55.0%
GCAAGCCATCGTTTGGGCAG+TGG - chr4_1:79515687-79515706 None:intergenic 60.0%
CGCTCTTCGTGTGCTCTCCA+AGG + chr4_1:79515754-79515773 Msa0575600:CDS 60.0%
CCGCAAGTGAGCAGTGGGAT+TGG - chr4_1:79516377-79516396 None:intergenic 60.0%
ATCCCACTGCTCACTTGCGG+GGG + chr4_1:79516377-79516396 Msa0575600:intron 60.0%
CCCACCGAAATTGGCACCAG+AGG + chr4_1:79516440-79516459 Msa0575600:intron 60.0%
TCCCACTGCTCACTTGCGGG+GGG + chr4_1:79516378-79516397 Msa0575600:intron 65.0%
CCCCCCCGCAAGTGAGCAGT+GGG - chr4_1:79516382-79516401 None:intergenic 70.0%
CCCACTGCTCACTTGCGGGG+GGG + chr4_1:79516379-79516398 Msa0575600:intron 70.0%
GCCCCCCCGCAAGTGAGCAG+TGG - chr4_1:79516383-79516402 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 79515599 79520797 79515599 ID=Msa0575600;Name=Msa0575600
chr4_1 mRNA 79515599 79520797 79515599 ID=Msa0575600-mRNA-1;Parent=Msa0575600;Name=Msa0575600-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|9|0|323
chr4_1 exon 79515599 79515775 79515599 ID=Msa0575600-mRNA-1:exon:28378;Parent=Msa0575600-mRNA-1
chr4_1 exon 79517304 79517375 79517304 ID=Msa0575600-mRNA-1:exon:28379;Parent=Msa0575600-mRNA-1
chr4_1 exon 79517754 79517843 79517754 ID=Msa0575600-mRNA-1:exon:28380;Parent=Msa0575600-mRNA-1
chr4_1 exon 79518052 79518094 79518052 ID=Msa0575600-mRNA-1:exon:28381;Parent=Msa0575600-mRNA-1
chr4_1 exon 79518350 79518456 79518350 ID=Msa0575600-mRNA-1:exon:28382;Parent=Msa0575600-mRNA-1
chr4_1 exon 79519097 79519192 79519097 ID=Msa0575600-mRNA-1:exon:28383;Parent=Msa0575600-mRNA-1
chr4_1 exon 79519371 79519561 79519371 ID=Msa0575600-mRNA-1:exon:28384;Parent=Msa0575600-mRNA-1
chr4_1 exon 79519680 79519749 79519680 ID=Msa0575600-mRNA-1:exon:28385;Parent=Msa0575600-mRNA-1
chr4_1 exon 79520672 79520797 79520672 ID=Msa0575600-mRNA-1:exon:28386;Parent=Msa0575600-mRNA-1
chr4_1 CDS 79515599 79515775 79515599 ID=Msa0575600-mRNA-1:cds;Parent=Msa0575600-mRNA-1
chr4_1 CDS 79517304 79517375 79517304 ID=Msa0575600-mRNA-1:cds;Parent=Msa0575600-mRNA-1
chr4_1 CDS 79517754 79517843 79517754 ID=Msa0575600-mRNA-1:cds;Parent=Msa0575600-mRNA-1
chr4_1 CDS 79518052 79518094 79518052 ID=Msa0575600-mRNA-1:cds;Parent=Msa0575600-mRNA-1
chr4_1 CDS 79518350 79518456 79518350 ID=Msa0575600-mRNA-1:cds;Parent=Msa0575600-mRNA-1
chr4_1 CDS 79519097 79519192 79519097 ID=Msa0575600-mRNA-1:cds;Parent=Msa0575600-mRNA-1
chr4_1 CDS 79519371 79519561 79519371 ID=Msa0575600-mRNA-1:cds;Parent=Msa0575600-mRNA-1
chr4_1 CDS 79519680 79519749 79519680 ID=Msa0575600-mRNA-1:cds;Parent=Msa0575600-mRNA-1
chr4_1 CDS 79520672 79520797 79520672 ID=Msa0575600-mRNA-1:cds;Parent=Msa0575600-mRNA-1
Gene Sequence

>Msa0575600

ATGGACAAAATTTCTCCTCATTCGCTCACAATGAAGAATGAATCTTCGTCTGTAGCTCCTCTTGGTGCTTCTACTCAATCAAGAACCACTGCCCAAACGATGGCTTGCATGGAACGCCTTGTTATTGAACTCAGCAATCCTGATCTTCGAGAAAACGCTCTTCGTGTGCTCTCCAAGAGGTATGAGTTATCTCCAGAACTTGCATCTTTATTATGGAATTCTTTTGGTATTATTGCAGTACTTTTACAGGAAATAACTTCAATATATTGTACTCTTTCACCACCGACTCTTACTCTAGCACAATCAACTCGAGTGTGTAACGTTCTTGCACTACTTCAGTGTGTGGCATCTCACTCTGAAACAAAGATGTTGTTCTTGAATGCTAGCATACCTTTGTATTTGTATCCCTTCCTTAAAACAAAAGACAAGTCACCACAGTTTGAGTATTTAAGGTTTGCAAGTCTTGGAGTCATTGGCGCCTTAGTGAAGGTTAACACCAAAGAAGTCATGGGTTACCTTATTTTAAGCGAGATAATTCCATTGTGCTTAAGCAACATGGAGATTGGAAATGAAATATCTAAAACTACTGCAACATTTATAATGCATAAAATTTTATTGGATGATGGTGGTTTGGCTTACGTTTGTGCTACAGCAGAGCGCTTTTTTGCAGTACGTCGTGTTTTGGACATGATGTTCGAAAGTCTTGACAAGCAACCTACACCTCGTCTTATAAAGTTTATAATTCCTTGCTATGCTCGTTTGTCTGATGATCGCTGGGCCGGCATTACATTAGCAAACTCTCTTCCTAGTGTGTTTAGAGACACCATTTTTCTTAATCAATTTCGTGAAGACCCAACAACATGGAAGTGGGTAAAGCACTTGCAGGAGAATGTGAGAAAGAACCAGGAACCTTTAGTAGCAGGTGGAGGAGAAAACAATGATATTATGGAGTCGTCAACATCAGGACAATGA

Protein sequence

>Msa0575600

MDKISPHSLTMKNESSSVAPLGASTQSRTTAQTMACMERLVIELSNPDLRENALRVLSKRYELSPELASLLWNSFGIIAVLLQEITSIYCTLSPPTLTLAQSTRVCNVLALLQCVASHSETKMLFLNASIPLYLYPFLKTKDKSPQFEYLRFASLGVIGALVKVNTKEVMGYLILSEIIPLCLSNMEIGNEISKTTATFIMHKILLDDGGLAYVCATAERFFAVRRVLDMMFESLDKQPTPRLIKFIIPCYARLSDDRWAGITLANSLPSVFRDTIFLNQFREDPTTWKWVKHLQENVRKNQEPLVAGGGENNDIMESSTSGQ*