Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576670 | AET05311.1 | 86.611 | 478 | 44 | 4 | 11 | 470 | 1 | 476 | 0.0 | 830 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576670 | sp|Q8L3W1|VRN1_ARATH | 30.861 | 337 | 172 | 14 | 49 | 327 | 6 | 339 | 5.56e-34 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576670 | G7L911 | 86.611 | 478 | 44 | 4 | 11 | 470 | 1 | 476 | 0.0 | 830 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0576670 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576670 | MtrunA17_Chr8g0390841 | 82.635 | 501 | 44 | 5 | 11 | 470 | 1 | 499 | 0.0 | 817 |
| Msa0576670 | MtrunA17_Chr1g0208771 | 65.256 | 449 | 125 | 7 | 43 | 470 | 1 | 439 | 0.0 | 577 |
| Msa0576670 | MtrunA17_Chr1g0163071 | 47.525 | 303 | 124 | 10 | 65 | 336 | 2 | 300 | 2.32e-78 | 246 |
| Msa0576670 | MtrunA17_Chr7g0233561 | 35.127 | 316 | 148 | 9 | 47 | 324 | 16 | 312 | 2.31e-51 | 177 |
| Msa0576670 | MtrunA17_Chr3g0131891 | 33.435 | 329 | 164 | 9 | 47 | 343 | 17 | 322 | 3.99e-43 | 155 |
| Msa0576670 | MtrunA17_Chr7g0233541 | 34.237 | 295 | 143 | 11 | 65 | 324 | 2 | 280 | 1.26e-40 | 147 |
| Msa0576670 | MtrunA17_Chr3g0103181 | 31.818 | 308 | 141 | 9 | 47 | 323 | 10 | 279 | 8.68e-39 | 142 |
| Msa0576670 | MtrunA17_Chr7g0233521 | 34.138 | 290 | 133 | 9 | 65 | 324 | 2 | 263 | 5.00e-36 | 134 |
| Msa0576670 | MtrunA17_Chr7g0233531 | 33.218 | 289 | 137 | 7 | 65 | 324 | 2 | 263 | 1.60e-35 | 133 |
| Msa0576670 | MtrunA17_Chr3g0103191 | 31.560 | 282 | 127 | 11 | 41 | 290 | 4 | 251 | 1.33e-33 | 127 |
| Msa0576670 | MtrunA17_Chr3g0103171 | 29.210 | 291 | 145 | 9 | 64 | 323 | 5 | 265 | 8.70e-32 | 122 |
| Msa0576670 | MtrunA17_Chr3g0103151 | 41.026 | 156 | 77 | 3 | 41 | 183 | 4 | 157 | 3.50e-31 | 117 |
| Msa0576670 | MtrunA17_Chr7g0233571 | 31.839 | 223 | 123 | 5 | 49 | 258 | 10 | 216 | 1.88e-28 | 112 |
| Msa0576670 | MtrunA17_Chr1g0163181 | 26.244 | 442 | 251 | 17 | 58 | 469 | 14 | 410 | 1.01e-27 | 114 |
| Msa0576670 | MtrunA17_Chr4g0067431 | 28.308 | 325 | 179 | 15 | 46 | 332 | 12 | 320 | 1.13e-24 | 104 |
| Msa0576670 | MtrunA17_Chr1g0163201 | 24.944 | 445 | 208 | 16 | 64 | 470 | 18 | 374 | 1.74e-24 | 105 |
| Msa0576670 | MtrunA17_Chr5g0419201 | 32.727 | 165 | 96 | 3 | 34 | 183 | 1 | 165 | 4.63e-23 | 96.3 |
| Msa0576670 | MtrunA17_Chr1g0163251 | 29.688 | 320 | 168 | 15 | 60 | 350 | 16 | 307 | 1.14e-22 | 99.8 |
| Msa0576670 | MtrunA17_Chr3g0103201 | 27.935 | 247 | 118 | 7 | 107 | 323 | 4 | 220 | 7.41e-22 | 94.0 |
| Msa0576670 | MtrunA17_Chr5g0429931 | 26.545 | 275 | 146 | 10 | 64 | 324 | 10 | 242 | 3.96e-19 | 86.7 |
| Msa0576670 | MtrunA17_Chr3g0077451 | 25.979 | 281 | 139 | 8 | 63 | 327 | 10 | 237 | 5.58e-19 | 86.3 |
| Msa0576670 | MtrunA17_Chr1g0163221 | 26.006 | 323 | 181 | 13 | 46 | 337 | 8 | 303 | 1.34e-18 | 87.0 |
| Msa0576670 | MtrunA17_Chr1g0163261 | 26.452 | 310 | 169 | 10 | 48 | 328 | 8 | 287 | 2.12e-18 | 85.9 |
| Msa0576670 | MtrunA17_Chr4g0033961 | 29.518 | 166 | 105 | 2 | 49 | 202 | 6 | 171 | 1.66e-17 | 84.7 |
| Msa0576670 | MtrunA17_Chr4g0033961 | 31.073 | 177 | 98 | 7 | 181 | 334 | 224 | 399 | 2.04e-14 | 75.1 |
| Msa0576670 | MtrunA17_Chr1g0163231 | 24.415 | 299 | 185 | 9 | 42 | 322 | 2 | 277 | 8.54e-17 | 80.9 |
| Msa0576670 | MtrunA17_Chr1g0171611 | 25.000 | 300 | 170 | 10 | 42 | 322 | 2 | 265 | 1.37e-16 | 80.1 |
| Msa0576670 | MtrunA17_Chr3g0077411 | 23.569 | 297 | 179 | 8 | 41 | 323 | 254 | 516 | 1.61e-16 | 82.0 |
| Msa0576670 | MtrunA17_Chr1g0162441 | 35.000 | 100 | 59 | 1 | 49 | 142 | 7 | 106 | 3.58e-13 | 71.2 |
| Msa0576670 | MtrunA17_Chr6g0467351 | 32.039 | 103 | 63 | 2 | 46 | 141 | 12 | 114 | 3.01e-12 | 66.2 |
| Msa0576670 | MtrunA17_Chr1g0154161 | 21.242 | 306 | 199 | 9 | 47 | 330 | 28 | 313 | 1.80e-11 | 65.1 |
| Msa0576670 | MtrunA17_Chr1g0163061 | 33.621 | 116 | 65 | 4 | 36 | 141 | 1 | 114 | 4.21e-11 | 63.5 |
| Msa0576670 | MtrunA17_Chr1g0163191 | 34.091 | 88 | 50 | 2 | 60 | 141 | 16 | 101 | 9.15e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0576670 | AT3G18990.1 | 30.861 | 337 | 172 | 14 | 49 | 327 | 6 | 339 | 5.65e-35 | 133 |
| Msa0576670 | AT3G18990.2 | 30.746 | 335 | 171 | 14 | 49 | 325 | 6 | 337 | 4.87e-34 | 132 |
| Msa0576670 | AT3G18960.2 | 36.538 | 104 | 60 | 1 | 48 | 145 | 29 | 132 | 1.08e-15 | 75.9 |
| Msa0576670 | AT3G18960.1 | 36.538 | 104 | 60 | 1 | 48 | 145 | 29 | 132 | 1.65e-15 | 75.9 |
| Msa0576670 | AT4G01580.1 | 36.538 | 104 | 60 | 1 | 48 | 145 | 29 | 132 | 2.95e-15 | 74.7 |
| Msa0576670 | AT1G49475.1 | 26.573 | 143 | 93 | 3 | 23 | 154 | 3 | 144 | 2.69e-13 | 68.9 |
| Msa0576670 | AT1G49480.3 | 34.821 | 112 | 53 | 5 | 234 | 327 | 115 | 224 | 8.20e-13 | 68.2 |
| Msa0576670 | AT1G49480.1 | 34.821 | 112 | 53 | 5 | 234 | 327 | 115 | 224 | 8.20e-13 | 68.2 |
| Msa0576670 | AT1G49480.2 | 34.821 | 112 | 53 | 5 | 234 | 327 | 115 | 224 | 8.20e-13 | 68.2 |
| Msa0576670 | AT3G18960.3 | 37.500 | 88 | 49 | 1 | 64 | 145 | 8 | 95 | 1.24e-11 | 63.5 |
Find 74 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAACTTGTCCAAGTTAA+AGG | 0.118978 | 4_1:+80723763 | Msa0576670:CDS |
| GAACAAACTTGTTGAAAATT+TGG | 0.135205 | 4_1:+80723618 | Msa0576670:CDS |
| CTTGATCATGCTTCACATTT+AGG | 0.162093 | 4_1:-80723916 | None:intergenic |
| CGTCATGACAACAGTGAAAA+AGG | 0.196529 | 4_1:-80724008 | None:intergenic |
| CCTTTAACTTGGACAAGTTT+AGG | 0.279816 | 4_1:-80723763 | None:intergenic |
| TTAATGGAGATGGAATTAAT+TGG | 0.309089 | 4_1:+80724526 | Msa0576670:CDS |
| GTTTGTAGAGGAAAATAAAT+TGG | 0.310756 | 4_1:+80725334 | Msa0576670:CDS |
| ATAGCAGAATGCAAGTTTCT+TGG | 0.360832 | 4_1:-80722269 | None:intergenic |
| TATTTCTTAGTGAAAGCATT+TGG | 0.366998 | 4_1:-80723343 | None:intergenic |
| CTCAATTTCTTATGTGGTTG+AGG | 0.369014 | 4_1:-80723691 | None:intergenic |
| GGAAGTACATTTGACCAAAA+AGG | 0.369637 | 4_1:+80723420 | Msa0576670:CDS |
| CTTCACATTTAGGCATTTAG+TGG | 0.383770 | 4_1:-80723906 | None:intergenic |
| ACCTCAACAAATATTCTAGA+TGG | 0.390301 | 4_1:+80722311 | Msa0576670:CDS |
| CAGAGTGGATGTGAATTGAT+TGG | 0.396589 | 4_1:-80724923 | None:intergenic |
| TAATGGAGATGGAATTAATT+GGG | 0.397926 | 4_1:+80724527 | Msa0576670:CDS |
| AAAACTATCATGTCACATAA+AGG | 0.413575 | 4_1:+80724582 | Msa0576670:CDS |
| CATATTTAACAAGAGTACTT+TGG | 0.415158 | 4_1:+80723555 | Msa0576670:intron |
| TCGATCACCTTTCCTGTGAA+TGG | 0.421077 | 4_1:-80722189 | None:intergenic |
| ACTCAACTTGGTTGACGGTT+CGG | 0.425773 | 4_1:-80725297 | None:intergenic |
| TCTCATTATCCATGACTTGA+AGG | 0.426650 | 4_1:-80724240 | None:intergenic |
| CTGGAGTCTTGAGAAACATT+GGG | 0.426683 | 4_1:-80723384 | None:intergenic |
| TAGCAGAATGCAAGTTTCTT+GGG | 0.429765 | 4_1:-80722268 | None:intergenic |
| CCAATTCTCAATTTCTTATG+TGG | 0.430787 | 4_1:-80723697 | None:intergenic |
| CTTGTGACACAAGTACTTCT+CGG | 0.432076 | 4_1:-80725213 | None:intergenic |
| AAACCTGTGGCATGTAAGAT+TGG | 0.435151 | 4_1:+80725262 | Msa0576670:CDS |
| ATATTTGGATTCACAAGGGT+TGG | 0.435488 | 4_1:+80723449 | Msa0576670:CDS |
| CCACATAAGAAATTGAGAAT+TGG | 0.439783 | 4_1:+80723697 | Msa0576670:CDS |
| AATTTATTATACCTTTAACT+TGG | 0.446187 | 4_1:-80723774 | None:intergenic |
| CCTGTACTCAACTTGGTTGA+CGG | 0.457593 | 4_1:-80725302 | None:intergenic |
| GATCTAGTCTTCTTGCATGT+AGG | 0.464753 | 4_1:-80723649 | None:intergenic |
| TTTGATAATAATTTGAAAGT+GGG | 0.464811 | 4_1:+80724322 | Msa0576670:CDS |
| CGATCACCTTTCCTGTGAAT+GGG | 0.468197 | 4_1:-80722188 | None:intergenic |
| TAGAATTACCTTGCGGTGGA+AGG | 0.469307 | 4_1:-80724426 | None:intergenic |
| CTTGGAATGTTAAACATTGT+GGG | 0.475665 | 4_1:+80724266 | Msa0576670:CDS |
| TTGGCATACCACAGGAAAGA+AGG | 0.492460 | 4_1:+80724837 | Msa0576670:intron |
| TCATGGATAATGAGAGAACT+TGG | 0.492868 | 4_1:+80724248 | Msa0576670:CDS |
| ATTTGATAATAATTTGAAAG+TGG | 0.495131 | 4_1:+80724321 | Msa0576670:CDS |
| TTCGAATCAGTTAATGGAGA+TGG | 0.506219 | 4_1:+80724516 | Msa0576670:intron |
| TCTGGAGTCTTGAGAAACAT+TGG | 0.510455 | 4_1:-80723385 | None:intergenic |
| ACTTGGAATGTTAAACATTG+TGG | 0.512866 | 4_1:+80724265 | Msa0576670:CDS |
| TGTGGGAGACATATTAGTAC+TGG | 0.514312 | 4_1:+80724283 | Msa0576670:CDS |
| AACTTGGTTGACGGTTCGGA+TGG | 0.514973 | 4_1:-80725293 | None:intergenic |
| GCTTTCACTAAGAAATATAG+TGG | 0.526593 | 4_1:+80723349 | Msa0576670:CDS |
| AGGTAACAATCTTAAAGAAA+CGG | 0.529659 | 4_1:-80722292 | None:intergenic |
| CGTTATCACCCTTCAAGTCA+TGG | 0.529744 | 4_1:+80724231 | Msa0576670:CDS |
| ACTCCAACCTGTACTCAACT+TGG | 0.532809 | 4_1:-80725309 | None:intergenic |
| TGTAGAGGAAAATAAATTGG+AGG | 0.533957 | 4_1:+80725337 | Msa0576670:CDS |
| GAGGAAAATAAATTGGAGGA+TGG | 0.537388 | 4_1:+80725341 | Msa0576670:CDS |
| TCGCCAATCTTACATGCCAC+AGG | 0.542280 | 4_1:-80725265 | None:intergenic |
| GACTTATGCCTCCCATTCAC+AGG | 0.545934 | 4_1:+80722177 | Msa0576670:CDS |
| CTCATTATCCATGACTTGAA+GGG | 0.556492 | 4_1:-80724239 | None:intergenic |
| AGAATTACCTTGCGGTGGAA+GGG | 0.558988 | 4_1:-80724425 | None:intergenic |
| TCATGCGGATGTTTACAAAC+CGG | 0.561557 | 4_1:+80724981 | Msa0576670:CDS |
| GAAACATCAGCATGTGTCCA+TGG | 0.562484 | 4_1:-80723501 | None:intergenic |
| TCCATCTAGAATATTTGTTG+AGG | 0.564502 | 4_1:-80722312 | None:intergenic |
| CCGTCAACCAAGTTGAGTAC+AGG | 0.579549 | 4_1:+80725302 | Msa0576670:CDS |
| AGGTTGGAGTAAGTTTGTAG+AGG | 0.581140 | 4_1:+80725322 | Msa0576670:CDS |
| TGGTGATATTTGGATTCACA+AGG | 0.584168 | 4_1:+80723444 | Msa0576670:CDS |
| TTCACTTTGATAGTGAAATG+TGG | 0.584688 | 4_1:-80724952 | None:intergenic |
| CAACTAGAATTACCTTGCGG+TGG | 0.590450 | 4_1:-80724430 | None:intergenic |
| ATTGGCGCAAGTGAAGATGT+TGG | 0.596112 | 4_1:+80723715 | Msa0576670:CDS |
| TTCCTATGCTAATAAATACA+TGG | 0.597714 | 4_1:+80724033 | Msa0576670:CDS |
| GGAGACATATTAGTACTGGA+TGG | 0.606406 | 4_1:+80724287 | Msa0576670:CDS |
| CACCATGTATTTATTAGCAT+AGG | 0.611640 | 4_1:-80724035 | None:intergenic |
| CAACCAAGTTGAGTACAGGT+TGG | 0.611957 | 4_1:+80725306 | Msa0576670:CDS |
| AAACATTCCCTTCCACCGCA+AGG | 0.615531 | 4_1:+80724418 | Msa0576670:CDS |
| ACACATTATTCTATAGACCA+TGG | 0.617727 | 4_1:+80723484 | Msa0576670:CDS |
| TATGTAAACCTCAAAATGAG+AGG | 0.618304 | 4_1:-80723536 | None:intergenic |
| ATGCCTCCCATTCACAGGAA+AGG | 0.618972 | 4_1:+80722182 | Msa0576670:CDS |
| TCACCTTTCCTGTGAATGGG+AGG | 0.620298 | 4_1:-80722185 | None:intergenic |
| CAAAGTGAAATCAAGTCATG+CGG | 0.640337 | 4_1:+80724966 | Msa0576670:CDS |
| AAGTATTTGAAGGAAAAGCA+AGG | 0.649480 | 4_1:+80724208 | Msa0576670:intron |
| TGTGAATGGGAGGCATAAGT+CGG | 0.653302 | 4_1:-80722175 | None:intergenic |
| GGTGATATTTGGATTCACAA+GGG | 0.673550 | 4_1:+80723445 | Msa0576670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGAATATGATATTTTTTTA+AGG | - | chr4_1:80721202-80721221 | None:intergenic | 10.0% |
| !!! | ATTGATAATTGATTTATTTA+AGG | + | chr4_1:80721852-80721871 | Msa0576670:intron | 10.0% |
| !! | AACTGTTATAATATTAAAAA+CGG | + | chr4_1:80722860-80722879 | Msa0576670:intron | 10.0% |
| !!! | GATTTTTTTTTTTTAGTATT+TGG | - | chr4_1:80722906-80722925 | None:intergenic | 10.0% |
| !! | TCAAAAATCAAAATATTAAT+TGG | - | chr4_1:80723833-80723852 | None:intergenic | 10.0% |
| !!! | GAAAATAAATTACATTTTAC+AGG | - | chr4_1:80720881-80720900 | None:intergenic | 15.0% |
| !!! | AAAAAAAATCTTGATAATTG+TGG | - | chr4_1:80721125-80721144 | None:intergenic | 15.0% |
| !! | AAAGACAAAATTAATATTAG+AGG | + | chr4_1:80721223-80721242 | Msa0576670:intron | 15.0% |
| !! | TACACTAATATCTATATATA+TGG | - | chr4_1:80721263-80721282 | None:intergenic | 15.0% |
| !! | ATTATAATGTTAGTTATCTT+TGG | - | chr4_1:80721454-80721473 | None:intergenic | 15.0% |
| !! | AATTTAGGCTTATTAAAATA+TGG | + | chr4_1:80721567-80721586 | Msa0576670:intron | 15.0% |
| !!! | AAGTATCCATATATTTTTAA+TGG | + | chr4_1:80721740-80721759 | Msa0576670:intron | 15.0% |
| !! | TTACAACCATTAAAAATATA+TGG | - | chr4_1:80721749-80721768 | None:intergenic | 15.0% |
| !!! | TTAAGTTTTGATATTTGAAA+AGG | - | chr4_1:80722480-80722499 | None:intergenic | 15.0% |
| !! | TTTAATATTATAACAGTTAG+TGG | - | chr4_1:80722858-80722877 | None:intergenic | 15.0% |
| !! | ACTGTTATAATATTAAAAAC+GGG | + | chr4_1:80722861-80722880 | Msa0576670:intron | 15.0% |
| !!! | ATCACTTTTTTAATGTTAAA+TGG | + | chr4_1:80722926-80722945 | Msa0576670:intron | 15.0% |
| !!! | TAACTAAAATAATTTGTAAG+TGG | - | chr4_1:80723024-80723043 | None:intergenic | 15.0% |
| !!! | TTTAGGAATTTTTTTCAATT+TGG | - | chr4_1:80723749-80723768 | None:intergenic | 15.0% |
| !! | AATTTATTATACCTTTAACT+TGG | - | chr4_1:80723777-80723796 | None:intergenic | 15.0% |
| !!! | ATTTTTGAAGATGAATTATT+CGG | - | chr4_1:80723944-80723963 | None:intergenic | 15.0% |
| !!! | ATTTGATAATAATTTGAAAG+TGG | + | chr4_1:80724321-80724340 | Msa0576670:CDS | 15.0% |
| !!! | TTTGATAATAATTTGAAAGT+GGG | + | chr4_1:80724322-80724341 | Msa0576670:CDS | 15.0% |
| !! | GGTTTATTTATATACAAAAC+AGG | - | chr4_1:80720822-80720841 | None:intergenic | 20.0% |
| !! | AAATATATGTTTCGAAAAAG+TGG | + | chr4_1:80721476-80721495 | Msa0576670:intron | 20.0% |
| !!! | TTTTAATGGTTGTAATATGA+TGG | + | chr4_1:80721754-80721773 | Msa0576670:intron | 20.0% |
| !! | AATATATTCAAATCAGTCTA+TGG | - | chr4_1:80721835-80721854 | None:intergenic | 20.0% |
| !! | TAAAAATTTATAGAGAGAAG+CGG | - | chr4_1:80722040-80722059 | None:intergenic | 20.0% |
| !!! | CTTCTCTCTATAAATTTTTA+GGG | + | chr4_1:80722040-80722059 | Msa0576670:intron | 20.0% |
| !! | CTTAAAAAAAAAATGGTTAG+TGG | - | chr4_1:80722646-80722665 | None:intergenic | 20.0% |
| !!! | CACTAACCATTTTTTTTTTA+AGG | + | chr4_1:80722644-80722663 | Msa0576670:intron | 20.0% |
| !! | ACTACTCCTTAAAAAAAAAA+TGG | - | chr4_1:80722653-80722672 | None:intergenic | 20.0% |
| !!! | TTTATCTATCTCTATTGTTT+TGG | - | chr4_1:80722739-80722758 | None:intergenic | 20.0% |
| !! | CTGTTATAATATTAAAAACG+GGG | + | chr4_1:80722862-80722881 | Msa0576670:intron | 20.0% |
| !! | GTTGCTTAAAAAAAGTTTAT+TGG | + | chr4_1:80722970-80722989 | Msa0576670:intron | 20.0% |
| !! | AGGTATAATAAATTCATGAT+TGG | + | chr4_1:80723783-80723802 | Msa0576670:intron | 20.0% |
| !!! | TTTTGAACTAAAGTATTTGA+AGG | + | chr4_1:80724198-80724217 | Msa0576670:intron | 20.0% |
| !!! | AATTGATTTTTTGCTTTTGT+TGG | + | chr4_1:80724818-80724837 | Msa0576670:intron | 20.0% |
| !! | AAACATAATCATGAGATAAA+TGG | - | chr4_1:80725086-80725105 | None:intergenic | 20.0% |
| ! | ATAAACAGCTTATAGCATTA+GGG | + | chr4_1:80720927-80720946 | Msa0576670:intron | 25.0% |
| ! | ATAAGCTCTTATACTTGATA+AGG | + | chr4_1:80720973-80720992 | Msa0576670:intron | 25.0% |
| !!! | AAACTTAACTTGTCGTTTTT+TGG | - | chr4_1:80721296-80721315 | None:intergenic | 25.0% |
| ! | ATAATGTTAGTTATCTTTGG+CGG | - | chr4_1:80721451-80721470 | None:intergenic | 25.0% |
| ! | TCAAAATAAGTCAATCCAAA+CGG | + | chr4_1:80721684-80721703 | Msa0576670:intron | 25.0% |
| !! | GCTTCTCTCTATAAATTTTT+AGG | + | chr4_1:80722039-80722058 | Msa0576670:intron | 25.0% |
| ! | AGGTAACAATCTTAAAGAAA+CGG | - | chr4_1:80722295-80722314 | None:intergenic | 25.0% |
| ! | GAAAGAAAGAATTGTTACTA+GGG | - | chr4_1:80722339-80722358 | None:intergenic | 25.0% |
| ! | TGAAAGAAAGAATTGTTACT+AGG | - | chr4_1:80722340-80722359 | None:intergenic | 25.0% |
| ! | CTCTTCTTCATTCTTTAATT+TGG | + | chr4_1:80722361-80722380 | Msa0576670:intron | 25.0% |
| ! | TACTTACACAAAATGTAAGT+AGG | + | chr4_1:80722397-80722416 | Msa0576670:intron | 25.0% |
| !!! | TTTGTCTAGACTTTAAGATT+AGG | + | chr4_1:80722432-80722451 | Msa0576670:intron | 25.0% |
| !!! | TTGTCTAGACTTTAAGATTA+GGG | + | chr4_1:80722433-80722452 | Msa0576670:intron | 25.0% |
| !! | TCTCTAAAAATGTCAAATCT+TGG | + | chr4_1:80723165-80723184 | Msa0576670:intron | 25.0% |
| !! | CTCTAAAAATGTCAAATCTT+GGG | + | chr4_1:80723166-80723185 | Msa0576670:intron | 25.0% |
| ! | TCTAAAAATGTCAAATCTTG+GGG | + | chr4_1:80723167-80723186 | Msa0576670:intron | 25.0% |
| ! | AAATAAAAGTTTAGGAGAGT+TGG | - | chr4_1:80723222-80723241 | None:intergenic | 25.0% |
| ! | AAGAGAGAAATATACATATG+TGG | - | chr4_1:80723263-80723282 | None:intergenic | 25.0% |
| !!! | TATTTCTTAGTGAAAGCATT+TGG | - | chr4_1:80723346-80723365 | None:intergenic | 25.0% |
| !!! | CATATTTAACAAGAGTACTT+TGG | + | chr4_1:80723555-80723574 | Msa0576670:intron | 25.0% |
| !!! | GAACAAACTTGTTGAAAATT+TGG | + | chr4_1:80723618-80723637 | Msa0576670:CDS | 25.0% |
| ! | TTCCTATGCTAATAAATACA+TGG | + | chr4_1:80724033-80724052 | Msa0576670:CDS | 25.0% |
| !! | ACTTTAGTTCAAAATCTACT+GGG | - | chr4_1:80724192-80724211 | None:intergenic | 25.0% |
| !! | TACTTTAGTTCAAAATCTAC+TGG | - | chr4_1:80724193-80724212 | None:intergenic | 25.0% |
| !!! | AAAGTACTAATTTTTCGACT+AGG | + | chr4_1:80724391-80724410 | Msa0576670:CDS | 25.0% |
| ! | TTTGTTGATCTCAAGAATAA+TGG | + | chr4_1:80724478-80724497 | Msa0576670:intron | 25.0% |
| ! | TTAATGGAGATGGAATTAAT+TGG | + | chr4_1:80724526-80724545 | Msa0576670:CDS | 25.0% |
| ! | TAATGGAGATGGAATTAATT+GGG | + | chr4_1:80724527-80724546 | Msa0576670:CDS | 25.0% |
| !!! | TAGTTTTATGTTCAACTCTA+GGG | - | chr4_1:80724569-80724588 | None:intergenic | 25.0% |
| !!! | ATAGTTTTATGTTCAACTCT+AGG | - | chr4_1:80724570-80724589 | None:intergenic | 25.0% |
| ! | AAAACTATCATGTCACATAA+AGG | + | chr4_1:80724582-80724601 | Msa0576670:CDS | 25.0% |
| ! | CAACAGTATTTAGTACAAAA+CGG | + | chr4_1:80724654-80724673 | Msa0576670:intron | 25.0% |
| !! | TGCTTATATTTAAGATCAGA+GGG | - | chr4_1:80725026-80725045 | None:intergenic | 25.0% |
| !! | TTGCTTATATTTAAGATCAG+AGG | - | chr4_1:80725027-80725046 | None:intergenic | 25.0% |
| ! | ATCATGAGATAAATGGTATT+TGG | - | chr4_1:80725079-80725098 | None:intergenic | 25.0% |
| ! | TACAGTTTAATAAAAACCTG+TGG | + | chr4_1:80725249-80725268 | Msa0576670:CDS | 25.0% |
| ! | GTTTGTAGAGGAAAATAAAT+TGG | + | chr4_1:80725334-80725353 | Msa0576670:CDS | 25.0% |
| ! | CTCAATGGTAATTCTAAGAA+TGG | - | chr4_1:80720843-80720862 | None:intergenic | 30.0% |
| ! | TTTTACAGGTGAACTTTGTT+TGG | - | chr4_1:80720867-80720886 | None:intergenic | 30.0% |
| ! | TATTTTCTGCAGTAGACTTT+AGG | + | chr4_1:80720894-80720913 | Msa0576670:intron | 30.0% |
| TATAAGCTGTTTATCCAAAC+GGG | - | chr4_1:80720921-80720940 | None:intergenic | 30.0% | |
| CTATAAGCTGTTTATCCAAA+CGG | - | chr4_1:80720922-80720941 | None:intergenic | 30.0% | |
| GATAAACAGCTTATAGCATT+AGG | + | chr4_1:80720926-80720945 | Msa0576670:intron | 30.0% | |
| ! | CTTGATAAGGTATTCATGTT+TGG | + | chr4_1:80720986-80721005 | Msa0576670:intron | 30.0% |
| ! | TTACCCAAACACCTTTAAAA+AGG | + | chr4_1:80721632-80721651 | Msa0576670:intron | 30.0% |
| !!! | AAGCCTTTTTAAAGGTGTTT+GGG | - | chr4_1:80721638-80721657 | None:intergenic | 30.0% |
| !!! | TAAGCCTTTTTAAAGGTGTT+TGG | - | chr4_1:80721639-80721658 | None:intergenic | 30.0% |
| ! | ACTCTCATAAGCCTTTTTAA+AGG | - | chr4_1:80721646-80721665 | None:intergenic | 30.0% |
| !!! | GACTTATTTTGAGCTTATGT+GGG | - | chr4_1:80721676-80721695 | None:intergenic | 30.0% |
| !!! | TGACTTATTTTGAGCTTATG+TGG | - | chr4_1:80721677-80721696 | None:intergenic | 30.0% |
| CAAAATAAGTCAATCCAAAC+GGG | + | chr4_1:80721685-80721704 | Msa0576670:intron | 30.0% | |
| GATTATTGAATATTCCCGTT+TGG | - | chr4_1:80721702-80721721 | None:intergenic | 30.0% | |
| ! | GTTGTAATATGATGGTCTTT+TGG | + | chr4_1:80721762-80721781 | Msa0576670:intron | 30.0% |
| TTATAGGAAAACCTTAGGTT+TGG | - | chr4_1:80721958-80721977 | None:intergenic | 30.0% | |
| ! | CCTTTTTATAGGAAAACCTT+AGG | - | chr4_1:80721963-80721982 | None:intergenic | 30.0% |
| ! | CCTAAGGTTTTCCTATAAAA+AGG | + | chr4_1:80721960-80721979 | Msa0576670:intron | 30.0% |
| ACCTCAACAAATATTCTAGA+TGG | + | chr4_1:80722311-80722330 | Msa0576670:CDS | 30.0% | |
| ! | TCCATCTAGAATATTTGTTG+AGG | - | chr4_1:80722315-80722334 | None:intergenic | 30.0% |
| AAGAGAAAGTCGTCATAAAA+TGG | + | chr4_1:80722782-80722801 | Msa0576670:intron | 30.0% | |
| !!! | ATTTGGTGTTCCTTTTGATT+AGG | - | chr4_1:80722889-80722908 | None:intergenic | 30.0% |
| ATCATATTACCCTATTACCA+AGG | - | chr4_1:80723134-80723153 | None:intergenic | 30.0% | |
| GCTTTCACTAAGAAATATAG+TGG | + | chr4_1:80723349-80723368 | Msa0576670:CDS | 30.0% | |
| ACACATTATTCTATAGACCA+TGG | + | chr4_1:80723484-80723503 | Msa0576670:CDS | 30.0% | |
| ! | TGAAAAAACCTCTCATTTTG+AGG | + | chr4_1:80723528-80723547 | Msa0576670:CDS | 30.0% |
| TATGTAAACCTCAAAATGAG+AGG | - | chr4_1:80723539-80723558 | None:intergenic | 30.0% | |
| CCAATTCTCAATTTCTTATG+TGG | - | chr4_1:80723700-80723719 | None:intergenic | 30.0% | |
| CCACATAAGAAATTGAGAAT+TGG | + | chr4_1:80723697-80723716 | Msa0576670:CDS | 30.0% | |
| CACCATGTATTTATTAGCAT+AGG | - | chr4_1:80724038-80724057 | None:intergenic | 30.0% | |
| AAGTATTTGAAGGAAAAGCA+AGG | + | chr4_1:80724208-80724227 | Msa0576670:intron | 30.0% | |
| ACTTGGAATGTTAAACATTG+TGG | + | chr4_1:80724265-80724284 | Msa0576670:CDS | 30.0% | |
| CTTGGAATGTTAAACATTGT+GGG | + | chr4_1:80724266-80724285 | Msa0576670:CDS | 30.0% | |
| AATCAACTAGAATTACCTTG+CGG | - | chr4_1:80724436-80724455 | None:intergenic | 30.0% | |
| ! | CGTTTTGTACTAAATACTGT+TGG | - | chr4_1:80724656-80724675 | None:intergenic | 30.0% |
| !! | TTCACTTTGATAGTGAAATG+TGG | - | chr4_1:80724955-80724974 | None:intergenic | 30.0% |
| ! | CTCATGATTATGTTTGAAAC+TGG | + | chr4_1:80725091-80725110 | Msa0576670:intron | 30.0% |
| TAATTCATGTCATGCATTCT+TGG | + | chr4_1:80725123-80725142 | Msa0576670:intron | 30.0% | |
| TGTAGAGGAAAATAAATTGG+AGG | + | chr4_1:80725337-80725356 | Msa0576670:CDS | 30.0% | |
| AATAAAAAAAACGCCGTTGC+CGG | + | chr4_1:80720716-80720735 | Msa0576670:intron | 35.0% | |
| CAAAAGTCGTTGTAGTATAG+TGG | - | chr4_1:80720784-80720803 | None:intergenic | 35.0% | |
| ! | CACTATACTACAACGACTTT+TGG | + | chr4_1:80720782-80720801 | Msa0576670:intron | 35.0% |
| ! | TGAACTTTGTTTGGACTCAA+TGG | - | chr4_1:80720858-80720877 | None:intergenic | 35.0% |
| ATAAGCTGTTTATCCAAACG+GGG | - | chr4_1:80720920-80720939 | None:intergenic | 35.0% | |
| ! | GCTTATGATGTAAGCTCTAA+TGG | - | chr4_1:80720959-80720978 | None:intergenic | 35.0% |
| ! | TAAATTTTCAGCTTACCCTC+CGG | - | chr4_1:80721553-80721572 | None:intergenic | 35.0% |
| ! | GTGTAGCTAAGCCTTTTTAT+AGG | - | chr4_1:80721974-80721993 | None:intergenic | 35.0% |
| AATAAAGAGACCCAATGATC+TGG | + | chr4_1:80722008-80722027 | Msa0576670:intron | 35.0% | |
| TAGCAGAATGCAAGTTTCTT+GGG | - | chr4_1:80722271-80722290 | None:intergenic | 35.0% | |
| ATAGCAGAATGCAAGTTTCT+TGG | - | chr4_1:80722272-80722291 | None:intergenic | 35.0% | |
| !! | CTAGACTTTAAGATTAGGGT+CGG | + | chr4_1:80722437-80722456 | Msa0576670:intron | 35.0% |
| TAGGGTCGGTCTAATTAAAT+CGG | + | chr4_1:80722451-80722470 | Msa0576670:intron | 35.0% | |
| !! | TTTGGAATTTTCTGCAGTCA+TGG | - | chr4_1:80723328-80723347 | None:intergenic | 35.0% |
| AGACTCCAGATGACAAAAAA+TGG | + | chr4_1:80723398-80723417 | Msa0576670:CDS | 35.0% | |
| GACTCCAGATGACAAAAAAT+GGG | + | chr4_1:80723399-80723418 | Msa0576670:CDS | 35.0% | |
| !!! | ACTTCCCATTTTTTGTCATC+TGG | - | chr4_1:80723406-80723425 | None:intergenic | 35.0% |
| ! | GGAAGTACATTTGACCAAAA+AGG | + | chr4_1:80723420-80723439 | Msa0576670:CDS | 35.0% |
| GTACATTTGACCAAAAAGGA+TGG | + | chr4_1:80723424-80723443 | Msa0576670:CDS | 35.0% | |
| ! | CCAAATATCACCATCCTTTT+TGG | - | chr4_1:80723437-80723456 | None:intergenic | 35.0% |
| CCAAAAAGGATGGTGATATT+TGG | + | chr4_1:80723434-80723453 | Msa0576670:CDS | 35.0% | |
| TGGTGATATTTGGATTCACA+AGG | + | chr4_1:80723444-80723463 | Msa0576670:CDS | 35.0% | |
| GGTGATATTTGGATTCACAA+GGG | + | chr4_1:80723445-80723464 | Msa0576670:CDS | 35.0% | |
| ATATTTGGATTCACAAGGGT+TGG | + | chr4_1:80723449-80723468 | Msa0576670:CDS | 35.0% | |
| CTCAATTTCTTATGTGGTTG+AGG | - | chr4_1:80723694-80723713 | None:intergenic | 35.0% | |
| !! | CCTTTAACTTGGACAAGTTT+AGG | - | chr4_1:80723766-80723785 | None:intergenic | 35.0% |
| CCTAAACTTGTCCAAGTTAA+AGG | + | chr4_1:80723763-80723782 | Msa0576670:CDS | 35.0% | |
| CTTCACATTTAGGCATTTAG+TGG | - | chr4_1:80723909-80723928 | None:intergenic | 35.0% | |
| CTTGATCATGCTTCACATTT+AGG | - | chr4_1:80723919-80723938 | None:intergenic | 35.0% | |
| GTCATGACAACAGTGAAAAA+GGG | - | chr4_1:80724010-80724029 | None:intergenic | 35.0% | |
| CTCATTATCCATGACTTGAA+GGG | - | chr4_1:80724242-80724261 | None:intergenic | 35.0% | |
| TCTCATTATCCATGACTTGA+AGG | - | chr4_1:80724243-80724262 | None:intergenic | 35.0% | |
| TCATGGATAATGAGAGAACT+TGG | + | chr4_1:80724248-80724267 | Msa0576670:CDS | 35.0% | |
| !! | ATCTCCATTAACTGATTCGA+AGG | - | chr4_1:80724517-80724536 | None:intergenic | 35.0% |
| TTCGAATCAGTTAATGGAGA+TGG | + | chr4_1:80724516-80724535 | Msa0576670:intron | 35.0% | |
| ! | AACATTGTCGTGACTTCTTT+TGG | + | chr4_1:80724614-80724633 | Msa0576670:intron | 35.0% |
| GTTCAATAGCAGCTATATAG+TGG | + | chr4_1:80724678-80724697 | Msa0576670:intron | 35.0% | |
| !! | GAAATGTGGATTTTTCAGAG+TGG | - | chr4_1:80724941-80724960 | None:intergenic | 35.0% |
| CAAAGTGAAATCAAGTCATG+CGG | + | chr4_1:80724966-80724985 | Msa0576670:CDS | 35.0% | |
| GAGGAAAATAAATTGGAGGA+TGG | + | chr4_1:80725341-80725360 | Msa0576670:CDS | 35.0% | |
| ATAAAAAAAACGCCGTTGCC+GGG | + | chr4_1:80720717-80720736 | Msa0576670:intron | 40.0% | |
| TTTCGAAAAAGTGGATCCAG+AGG | + | chr4_1:80721485-80721504 | Msa0576670:intron | 40.0% | |
| TTCGAAAAAGTGGATCCAGA+GGG | + | chr4_1:80721486-80721505 | Msa0576670:intron | 40.0% | |
| TCATAAGCTCCTTGTTAAGC+CGG | + | chr4_1:80721531-80721550 | Msa0576670:intron | 40.0% | |
| GGAGGGTAAGCTGAAAATTT+AGG | + | chr4_1:80721552-80721571 | Msa0576670:intron | 40.0% | |
| GGATCAAATCTCCAAACCTA+AGG | + | chr4_1:80721944-80721963 | Msa0576670:intron | 40.0% | |
| TAGTGGAGCTCAACAAAAGT+TGG | - | chr4_1:80722629-80722648 | None:intergenic | 40.0% | |
| !! | CAGTTAGTGGTTAGTTTGAC+TGG | - | chr4_1:80722845-80722864 | None:intergenic | 40.0% |
| AAAACGGGGTCCTAATCAAA+AGG | + | chr4_1:80722876-80722895 | Msa0576670:intron | 40.0% | |
| ! | AGTGTGAGAACCTTGGTAAT+AGG | + | chr4_1:80723121-80723140 | Msa0576670:intron | 40.0% |
| ! | GTGTGAGAACCTTGGTAATA+GGG | + | chr4_1:80723122-80723141 | Msa0576670:intron | 40.0% |
| ! | TTTAGGAGAGTTGGTTCCTA+AGG | - | chr4_1:80723213-80723232 | None:intergenic | 40.0% |
| CTGGAGTCTTGAGAAACATT+GGG | - | chr4_1:80723387-80723406 | None:intergenic | 40.0% | |
| ! | TCTGGAGTCTTGAGAAACAT+TGG | - | chr4_1:80723388-80723407 | None:intergenic | 40.0% |
| ! | GATCTAGTCTTCTTGCATGT+AGG | - | chr4_1:80723652-80723671 | None:intergenic | 40.0% |
| TGCCATGTTCAATTTCTCAG+AGG | + | chr4_1:80723871-80723890 | Msa0576670:intron | 40.0% | |
| ! | CTCCTCTGAGAAATTGAACA+TGG | - | chr4_1:80723876-80723895 | None:intergenic | 40.0% |
| CGTCATGACAACAGTGAAAA+AGG | - | chr4_1:80724011-80724030 | None:intergenic | 40.0% | |
| CAAAATCTACTGGGATGTAC+TGG | - | chr4_1:80724183-80724202 | None:intergenic | 40.0% | |
| TGTGGGAGACATATTAGTAC+TGG | + | chr4_1:80724283-80724302 | Msa0576670:CDS | 40.0% | |
| ! | GGAGACATATTAGTACTGGA+TGG | + | chr4_1:80724287-80724306 | Msa0576670:CDS | 40.0% |
| TCGTCCTTCGAATCAGTTAA+TGG | + | chr4_1:80724510-80724529 | Msa0576670:intron | 40.0% | |
| CCGAGATTCGCAAAAAATGA+CGG | - | chr4_1:80724730-80724749 | None:intergenic | 40.0% | |
| !!! | CCGTCATTTTTTGCGAATCT+CGG | + | chr4_1:80724727-80724746 | Msa0576670:intron | 40.0% |
| CAGAGTGGATGTGAATTGAT+TGG | - | chr4_1:80724926-80724945 | None:intergenic | 40.0% | |
| TCATGCGGATGTTTACAAAC+CGG | + | chr4_1:80724981-80725000 | Msa0576670:CDS | 40.0% | |
| AGAGTGTGTGTATTGCTTAC+CGG | - | chr4_1:80725003-80725022 | None:intergenic | 40.0% | |
| TGTGTATACGCTGCAGTTAA+CGG | - | chr4_1:80725184-80725203 | None:intergenic | 40.0% | |
| CTTGTGACACAAGTACTTCT+CGG | - | chr4_1:80725216-80725235 | None:intergenic | 40.0% | |
| AAACCTGTGGCATGTAAGAT+TGG | + | chr4_1:80725262-80725281 | Msa0576670:CDS | 40.0% | |
| AGGTTGGAGTAAGTTTGTAG+AGG | + | chr4_1:80725322-80725341 | Msa0576670:CDS | 40.0% | |
| GAACGATGACGATGAAACTG+AGG | + | chr4_1:80720677-80720696 | Msa0576670:intron | 45.0% | |
| TAAAAAAAACGCCGTTGCCG+GGG | + | chr4_1:80720718-80720737 | Msa0576670:intron | 45.0% | |
| ! | TGTGAATGGGAGGCATAAGT+CGG | - | chr4_1:80722178-80722197 | None:intergenic | 45.0% |
| CGATCACCTTTCCTGTGAAT+GGG | - | chr4_1:80722191-80722210 | None:intergenic | 45.0% | |
| TCGATCACCTTTCCTGTGAA+TGG | - | chr4_1:80722192-80722211 | None:intergenic | 45.0% | |
| AAGGTTCTCACACTGACAGT+TGG | - | chr4_1:80723115-80723134 | None:intergenic | 45.0% | |
| AACTGTCAGTGTGAGAACCT+TGG | + | chr4_1:80723114-80723133 | Msa0576670:intron | 45.0% | |
| ! | GTCAAATCTTGGGGCTTTTC+TGG | + | chr4_1:80723176-80723195 | Msa0576670:intron | 45.0% |
| GAAACATCAGCATGTGTCCA+TGG | - | chr4_1:80723504-80723523 | None:intergenic | 45.0% | |
| ATTGGCGCAAGTGAAGATGT+TGG | + | chr4_1:80723715-80723734 | Msa0576670:CDS | 45.0% | |
| CGTTATCACCCTTCAAGTCA+TGG | + | chr4_1:80724231-80724250 | Msa0576670:CDS | 45.0% | |
| AGAATTACCTTGCGGTGGAA+GGG | - | chr4_1:80724428-80724447 | None:intergenic | 45.0% | |
| TAGAATTACCTTGCGGTGGA+AGG | - | chr4_1:80724429-80724448 | None:intergenic | 45.0% | |
| CAACTAGAATTACCTTGCGG+TGG | - | chr4_1:80724433-80724452 | None:intergenic | 45.0% | |
| ! | TGCTTTTGTTGGCATACCAC+AGG | + | chr4_1:80724829-80724848 | Msa0576670:intron | 45.0% |
| TTGGCATACCACAGGAAAGA+AGG | + | chr4_1:80724837-80724856 | Msa0576670:intron | 45.0% | |
| ! | TTGAGTTGCCTTCTTTCCTG+TGG | - | chr4_1:80724848-80724867 | None:intergenic | 45.0% |
| ACTCAACTTGGTTGACGGTT+CGG | - | chr4_1:80725300-80725319 | None:intergenic | 45.0% | |
| CCTGTACTCAACTTGGTTGA+CGG | - | chr4_1:80725305-80725324 | None:intergenic | 45.0% | |
| ! | CAACCAAGTTGAGTACAGGT+TGG | + | chr4_1:80725306-80725325 | Msa0576670:CDS | 45.0% |
| ACTCCAACCTGTACTCAACT+TGG | - | chr4_1:80725312-80725331 | None:intergenic | 45.0% | |
| !!! | TTTTATTTTTATTTTTTTGA+AGG | - | chr4_1:80721372-80721391 | None:intergenic | 5.0% |
| !!! | TCTTTATTTTATTTTATTTT+TGG | + | chr4_1:80721923-80721942 | Msa0576670:intron | 5.0% |
| !!! | TTTTTTATAAATAAAAGTTT+AGG | - | chr4_1:80723230-80723249 | None:intergenic | 5.0% |
| AGTAGACTTTAGGCCCCGTT+TGG | + | chr4_1:80720904-80720923 | Msa0576670:intron | 50.0% | |
| TAACCTCCTTCGATTCCCTC+TGG | - | chr4_1:80721504-80721523 | None:intergenic | 50.0% | |
| TAAGCTCCTTGTTAAGCCGG+AGG | + | chr4_1:80721534-80721553 | Msa0576670:intron | 50.0% | |
| AAGCTCCTTGTTAAGCCGGA+GGG | + | chr4_1:80721535-80721554 | Msa0576670:intron | 50.0% | |
| GCGGTACGTACCAGATCATT+GGG | - | chr4_1:80722021-80722040 | None:intergenic | 50.0% | |
| AGCGGTACGTACCAGATCAT+TGG | - | chr4_1:80722022-80722041 | None:intergenic | 50.0% | |
| GACTTATGCCTCCCATTCAC+AGG | + | chr4_1:80722177-80722196 | Msa0576670:CDS | 50.0% | |
| ATGCCTCCCATTCACAGGAA+AGG | + | chr4_1:80722182-80722201 | Msa0576670:CDS | 50.0% | |
| TCACCTTTCCTGTGAATGGG+AGG | - | chr4_1:80722188-80722207 | None:intergenic | 50.0% | |
| AAACATTCCCTTCCACCGCA+AGG | + | chr4_1:80724418-80724437 | Msa0576670:CDS | 50.0% | |
| TCGCCAATCTTACATGCCAC+AGG | - | chr4_1:80725268-80725287 | None:intergenic | 50.0% | |
| ! | AACTTGGTTGACGGTTCGGA+TGG | - | chr4_1:80725296-80725315 | None:intergenic | 50.0% |
| ! | CCGTCAACCAAGTTGAGTAC+AGG | + | chr4_1:80725302-80725321 | Msa0576670:CDS | 50.0% |
| AAGTATTCCCGCCTGTCACG+CGG | - | chr4_1:80720760-80720779 | None:intergenic | 55.0% | |
| GTGGATCCAGAGGGAATCGA+AGG | + | chr4_1:80721495-80721514 | Msa0576670:intron | 55.0% | |
| GATCCAGAGGGAATCGAAGG+AGG | + | chr4_1:80721498-80721517 | Msa0576670:intron | 55.0% | |
| GCTTACCCTCCGGCTTAACA+AGG | - | chr4_1:80721543-80721562 | None:intergenic | 55.0% | |
| AGTATTCCCGCCTGTCACGC+GGG | - | chr4_1:80720759-80720778 | None:intergenic | 60.0% | |
| TCTGGACTCTCGCGAGCCTT+AGG | + | chr4_1:80723194-80723213 | Msa0576670:intron | 60.0% | |
| CCGGGTTCGATCCCCGGCAA+CGG | - | chr4_1:80720732-80720751 | None:intergenic | 70.0% | |
| CCGTTGCCGGGGATCGAACC+CGG | + | chr4_1:80720729-80720748 | Msa0576670:intron | 70.0% | |
| CGTTGCCGGGGATCGAACCC+GGG | + | chr4_1:80720730-80720749 | Msa0576670:intron | 70.0% | |
| GGTGACCCGGGTTCGATCCC+CGG | - | chr4_1:80720738-80720757 | None:intergenic | 70.0% | |
| ACCCGGGTCACCCGCGTGAC+AGG | + | chr4_1:80720746-80720765 | Msa0576670:intron | 75.0% | |
| GCCTGTCACGCGGGTGACCC+GGG | - | chr4_1:80720750-80720769 | None:intergenic | 75.0% | |
| CGCCTGTCACGCGGGTGACC+CGG | - | chr4_1:80720751-80720770 | None:intergenic | 75.0% | |
| CGGGTCACCCGCGTGACAGG+CGG | + | chr4_1:80720749-80720768 | Msa0576670:intron | 75.0% | |
| GGGTCACCCGCGTGACAGGC+GGG | + | chr4_1:80720750-80720769 | Msa0576670:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 80720643 | 80725370 | 80720643 | ID=Msa0576670;Name=Msa0576670 |
| chr4_1 | mRNA | 80720643 | 80725370 | 80720643 | ID=Msa0576670-mRNA-1;Parent=Msa0576670;Name=Msa0576670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|0.88|0.87|0.66|9|0|470 |
| chr4_1 | exon | 80720643 | 80720651 | 80720643 | ID=Msa0576670-mRNA-1:exon:28942;Parent=Msa0576670-mRNA-1 |
| chr4_1 | exon | 80722161 | 80722340 | 80722161 | ID=Msa0576670-mRNA-1:exon:28943;Parent=Msa0576670-mRNA-1 |
| chr4_1 | exon | 80723337 | 80723549 | 80723337 | ID=Msa0576670-mRNA-1:exon:28944;Parent=Msa0576670-mRNA-1 |
| chr4_1 | exon | 80723568 | 80723784 | 80723568 | ID=Msa0576670-mRNA-1:exon:28945;Parent=Msa0576670-mRNA-1 |
| chr4_1 | exon | 80723891 | 80724054 | 80723891 | ID=Msa0576670-mRNA-1:exon:28946;Parent=Msa0576670-mRNA-1 |
| chr4_1 | exon | 80724220 | 80724439 | 80724220 | ID=Msa0576670-mRNA-1:exon:28947;Parent=Msa0576670-mRNA-1 |
| chr4_1 | exon | 80724526 | 80724603 | 80724526 | ID=Msa0576670-mRNA-1:exon:28948;Parent=Msa0576670-mRNA-1 |
| chr4_1 | exon | 80724851 | 80725002 | 80724851 | ID=Msa0576670-mRNA-1:exon:28949;Parent=Msa0576670-mRNA-1 |
| chr4_1 | exon | 80725194 | 80725370 | 80725194 | ID=Msa0576670-mRNA-1:exon:28950;Parent=Msa0576670-mRNA-1 |
| chr4_1 | CDS | 80720643 | 80720651 | 80720643 | ID=Msa0576670-mRNA-1:cds;Parent=Msa0576670-mRNA-1 |
| chr4_1 | CDS | 80722161 | 80722340 | 80722161 | ID=Msa0576670-mRNA-1:cds;Parent=Msa0576670-mRNA-1 |
| chr4_1 | CDS | 80723337 | 80723549 | 80723337 | ID=Msa0576670-mRNA-1:cds;Parent=Msa0576670-mRNA-1 |
| chr4_1 | CDS | 80723568 | 80723784 | 80723568 | ID=Msa0576670-mRNA-1:cds;Parent=Msa0576670-mRNA-1 |
| chr4_1 | CDS | 80723891 | 80724054 | 80723891 | ID=Msa0576670-mRNA-1:cds;Parent=Msa0576670-mRNA-1 |
| chr4_1 | CDS | 80724220 | 80724439 | 80724220 | ID=Msa0576670-mRNA-1:cds;Parent=Msa0576670-mRNA-1 |
| chr4_1 | CDS | 80724526 | 80724603 | 80724526 | ID=Msa0576670-mRNA-1:cds;Parent=Msa0576670-mRNA-1 |
| chr4_1 | CDS | 80724851 | 80725002 | 80724851 | ID=Msa0576670-mRNA-1:cds;Parent=Msa0576670-mRNA-1 |
| chr4_1 | CDS | 80725194 | 80725370 | 80725194 | ID=Msa0576670-mRNA-1:cds;Parent=Msa0576670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
