Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578240 | XP_024637513.1 | 88.996 | 518 | 42 | 4 | 1 | 517 | 1 | 504 | 0.0 | 862 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578240 | sp|O94481|TFC5_SCHPO | 50.909 | 55 | 27 | 0 | 377 | 431 | 380 | 434 | 1.31e-11 | 70.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578240 | A0A396IBT0 | 88.996 | 518 | 42 | 4 | 1 | 517 | 1 | 504 | 0.0 | 862 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0578240 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578240 | MtrunA17_Chr4g0033581 | 88.996 | 518 | 42 | 4 | 1 | 517 | 1 | 504 | 0.0 | 862 |
| Msa0578240 | MtrunA17_Chr8g0383101 | 53.671 | 395 | 153 | 10 | 148 | 516 | 371 | 761 | 1.04e-89 | 292 |
| Msa0578240 | MtrunA17_Chr8g0383111 | 56.410 | 117 | 47 | 3 | 135 | 250 | 46 | 159 | 9.82e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578240 | AT4G39160.1 | 38.372 | 258 | 137 | 7 | 202 | 450 | 277 | 521 | 1.45e-37 | 147 |
| Msa0578240 | AT4G39160.3 | 38.372 | 258 | 137 | 7 | 202 | 450 | 277 | 521 | 1.45e-37 | 147 |
| Msa0578240 | AT4G39160.2 | 38.372 | 258 | 137 | 7 | 202 | 450 | 277 | 521 | 1.82e-37 | 147 |
Find 116 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTCAATCAATTTCTCTT+AGG | 0.163126 | 4_1:+82805749 | Msa0578240:CDS |
| GGGTTTGAGGTCGCGATTTC+GGG | 0.182182 | 4_1:-82803307 | None:intergenic |
| TCTTATATTTGCTTAGAATA+TGG | 0.203480 | 4_1:-82807990 | None:intergenic |
| GACCTCAAACCCCAACTTTC+CGG | 0.269030 | 4_1:+82803318 | Msa0578240:five_prime_UTR |
| TCTTGCAATTGCAGAAAATA+AGG | 0.274714 | 4_1:+82805777 | Msa0578240:CDS |
| TCTATATTGTTACAAATATA+AGG | 0.289417 | 4_1:-82805408 | None:intergenic |
| GGGGTTTGAGGTCGCGATTT+CGG | 0.330188 | 4_1:-82803308 | None:intergenic |
| TTTGATTTGTCTTGAATGAT+TGG | 0.332251 | 4_1:-82803353 | None:intergenic |
| CACAGTGGACCAGGCTCTGC+TGG | 0.334784 | 4_1:+82805711 | Msa0578240:intron |
| GTTGAATCATTGTAAAATCT+AGG | 0.346657 | 4_1:-82806666 | None:intergenic |
| AGCGAATCCACCGGAAAGTT+GGG | 0.356355 | 4_1:-82803328 | None:intergenic |
| ACAAGTCACCTAGGGTAAAA+TGG | 0.357410 | 4_1:+82806453 | Msa0578240:CDS |
| TGAGGTCGCGATTTCGGGTT+CGG | 0.362855 | 4_1:-82803302 | None:intergenic |
| CATGCTACCTCGTCTGTAGA+TGG | 0.366233 | 4_1:+82804605 | Msa0578240:CDS |
| CTGCTGGATGATTATGAACT+TGG | 0.367304 | 4_1:+82805727 | Msa0578240:CDS |
| GGCTTCCTGATTTGCATTAG+TGG | 0.370648 | 4_1:-82806977 | None:intergenic |
| CCCGAGACCAACCTCAATAA+TGG | 0.372518 | 4_1:+82804674 | Msa0578240:CDS |
| ACCATTATTGAGGTTGGTCT+CGG | 0.372588 | 4_1:-82804675 | None:intergenic |
| CACTTCTGAAGCCAACATTT+AGG | 0.375419 | 4_1:-82804932 | None:intergenic |
| TTCTACCACTAATGCAAATC+AGG | 0.389275 | 4_1:+82806972 | Msa0578240:CDS |
| TTCTCAATCAATTTCTCTTA+GGG | 0.392485 | 4_1:+82805750 | Msa0578240:CDS |
| TACTAGCTTGATCATACTCT+TGG | 0.398834 | 4_1:-82806379 | None:intergenic |
| CACCGGAAAGTTGGGGTTTG+AGG | 0.401753 | 4_1:-82803320 | None:intergenic |
| GTTGGCTTCAGAAGTGCTTC+AGG | 0.403637 | 4_1:+82804939 | Msa0578240:CDS |
| GGGGATTTCTTTCATGATGC+TGG | 0.405910 | 4_1:+82806305 | Msa0578240:CDS |
| AAAAGTTCTCTCATTCTTCT+CGG | 0.409991 | 4_1:+82805592 | Msa0578240:CDS |
| CAGCGAATCCACCGGAAAGT+TGG | 0.412347 | 4_1:-82803329 | None:intergenic |
| ACATAGGCTCTGAAGGAGTT+TGG | 0.412678 | 4_1:+82806643 | Msa0578240:intron |
| TTGAAAATGAGAGTGAAGAG+AGG | 0.421788 | 4_1:-82803212 | None:intergenic |
| GCTATTAATAGTCGTTCATC+AGG | 0.426472 | 4_1:+82806772 | Msa0578240:CDS |
| AAGCAAATTTCTCTGATAAG+AGG | 0.427008 | 4_1:+82807942 | Msa0578240:CDS |
| CGTAAAAGATCATCTGTTGC+TGG | 0.432583 | 4_1:+82805276 | Msa0578240:CDS |
| AGAGGGAGGAAAAGAGCAAA+GGG | 0.437515 | 4_1:-82803194 | None:intergenic |
| TTTGACCTTCGGCGCAAACT+TGG | 0.442856 | 4_1:-82804543 | None:intergenic |
| GTGACTTGTCCCTAAAAGAA+TGG | 0.456507 | 4_1:-82806439 | None:intergenic |
| AACATAACTTACCATTATTG+AGG | 0.456653 | 4_1:-82804685 | None:intergenic |
| AAACTCAAACTCATTAATTG+AGG | 0.471340 | 4_1:+82805365 | Msa0578240:CDS |
| ATTGAGGTTGGTCTCGGGAA+TGG | 0.473304 | 4_1:-82804669 | None:intergenic |
| AGAGTGCATACATTAATTCC+AGG | 0.475172 | 4_1:-82807027 | None:intergenic |
| TTTCATTCCCACAGTGGACC+AGG | 0.476047 | 4_1:+82805702 | Msa0578240:intron |
| CTGTGTTGCTTACCTTCGAT+TGG | 0.477352 | 4_1:-82805938 | None:intergenic |
| CAGTGCTGATGTTAAAGATC+AGG | 0.478050 | 4_1:+82807570 | Msa0578240:CDS |
| TGCAGATATTTCCTTTCGTA+AGG | 0.479200 | 4_1:-82804576 | None:intergenic |
| AATGGAATGAATGTTGTTCT+CGG | 0.482678 | 4_1:-82804982 | None:intergenic |
| TGACTTGTCCCTAAAAGAAT+GGG | 0.487889 | 4_1:-82806438 | None:intergenic |
| TAACTTACCATTATTGAGGT+TGG | 0.489810 | 4_1:-82804681 | None:intergenic |
| TCAAGACAAATCAAAAGAAA+AGG | 0.491272 | 4_1:+82803361 | Msa0578240:five_prime_UTR |
| CCATTATTGAGGTTGGTCTC+GGG | 0.494784 | 4_1:-82804674 | None:intergenic |
| CATTACTAACCACGTGCAGC+AGG | 0.498380 | 4_1:-82804262 | None:intergenic |
| GCATTAGTGGTAGAAATTTG+TGG | 0.499145 | 4_1:-82806964 | None:intergenic |
| TGTTGCTTACCTTCGATTGG+TGG | 0.499150 | 4_1:-82805935 | None:intergenic |
| TCACTATCATCAGATTGCTC+TGG | 0.502518 | 4_1:-82807616 | None:intergenic |
| TGCAGAAAATAAGGAGCGAC+CGG | 0.506681 | 4_1:+82805786 | Msa0578240:CDS |
| TAGTGCCAAGTTTGCGCCGA+AGG | 0.506770 | 4_1:+82804538 | Msa0578240:CDS |
| TCATTAATTGAGGATGATGA+TGG | 0.509072 | 4_1:+82805375 | Msa0578240:CDS |
| GATCCATGAGGCAGGTTGGT+TGG | 0.509436 | 4_1:-82804213 | None:intergenic |
| GTGATGATGACTTACAGAAA+TGG | 0.510346 | 4_1:+82807635 | Msa0578240:CDS |
| GAGAGGGAGGAAAAGAGCAA+AGG | 0.514133 | 4_1:-82803195 | None:intergenic |
| ATAGCATCAGTTATTCGTAA+AGG | 0.518506 | 4_1:-82806754 | None:intergenic |
| AAATGAGAGTGAAGAGAGGG+AGG | 0.521330 | 4_1:-82803208 | None:intergenic |
| AAATATTTAGCTGCAGTGGT+GGG | 0.523222 | 4_1:+82806285 | Msa0578240:intron |
| AAATTCAGAAGAGAGGAAGC+AGG | 0.524487 | 4_1:-82803274 | None:intergenic |
| AGGCCAACCAACCTGCCTCA+TGG | 0.528196 | 4_1:+82804210 | Msa0578240:intron |
| TTTAAAATATTTAGCTGCAG+TGG | 0.528589 | 4_1:+82806281 | Msa0578240:intron |
| TGAAAATGAGAGTGAAGAGA+GGG | 0.528633 | 4_1:-82803211 | None:intergenic |
| CATAATCATCCAGCAGAGCC+TGG | 0.529086 | 4_1:-82805720 | None:intergenic |
| GTAATACTTTCTCGAAGTCC+AGG | 0.532042 | 4_1:+82807777 | Msa0578240:CDS |
| GGAATGGATTTAGTGACGGT+GGG | 0.535901 | 4_1:-82804653 | None:intergenic |
| AAAATATTTAGCTGCAGTGG+TGG | 0.541517 | 4_1:+82806284 | Msa0578240:intron |
| AATGGATTTAGTGACGGTGG+GGG | 0.543456 | 4_1:-82804651 | None:intergenic |
| CTGTCAAGGAATGCAGTGGA+TGG | 0.545069 | 4_1:-82804870 | None:intergenic |
| CTCTGGACTATGATACGCCA+TGG | 0.555687 | 4_1:-82807599 | None:intergenic |
| AAGATCATCTGTTGCTGGTG+TGG | 0.557955 | 4_1:+82805281 | Msa0578240:CDS |
| ATGCTACCTCGTCTGTAGAT+GGG | 0.560684 | 4_1:+82804606 | Msa0578240:CDS |
| AATATTTAGCTGCAGTGGTG+GGG | 0.567750 | 4_1:+82806286 | Msa0578240:intron |
| GTCAAGGAATGCAGTGGATG+GGG | 0.578734 | 4_1:-82804868 | None:intergenic |
| TTGCAAGACAGCCTAAATGT+TGG | 0.580193 | 4_1:+82804921 | Msa0578240:CDS |
| TCTATAATTCAGATAAGAGA+GGG | 0.581623 | 4_1:-82803241 | None:intergenic |
| AAAAGATCCATGAGGCAGGT+TGG | 0.585641 | 4_1:-82804217 | None:intergenic |
| TTTATTAGGATGCTAATGAG+AGG | 0.585716 | 4_1:+82805235 | Msa0578240:intron |
| ATCAAAACAGTCCTTACGAA+AGG | 0.590154 | 4_1:+82804565 | Msa0578240:CDS |
| GAATGGATTTAGTGACGGTG+GGG | 0.591826 | 4_1:-82804652 | None:intergenic |
| ACTACTGAAGACATGTCACC+TGG | 0.592887 | 4_1:+82807009 | Msa0578240:CDS |
| CTCGGGAATGGATTTAGTGA+CGG | 0.594357 | 4_1:-82804657 | None:intergenic |
| GCGAATCCACCGGAAAGTTG+GGG | 0.594414 | 4_1:-82803327 | None:intergenic |
| AAATGATGACGAGGACGAAG+TGG | 0.594931 | 4_1:+82805443 | Msa0578240:CDS |
| GTCTTCAGTAGTGTCTTCAG+TGG | 0.600402 | 4_1:-82806998 | None:intergenic |
| CTCAAACCCCAACTTTCCGG+TGG | 0.601709 | 4_1:+82803321 | Msa0578240:five_prime_UTR |
| TGCTGATGTTAAAGATCAGG+AGG | 0.606209 | 4_1:+82807573 | Msa0578240:CDS |
| TTCTATAATTCAGATAAGAG+AGG | 0.608069 | 4_1:-82803242 | None:intergenic |
| CAAAATCTTCCACCAATCGA+AGG | 0.613148 | 4_1:+82805926 | Msa0578240:CDS |
| GGGAATGGATTTAGTGACGG+TGG | 0.613872 | 4_1:-82804654 | None:intergenic |
| CTTGAAGCTCCTGCTGCACG+TGG | 0.616756 | 4_1:+82804253 | Msa0578240:CDS |
| TGTCAAGGAATGCAGTGGAT+GGG | 0.621373 | 4_1:-82804869 | None:intergenic |
| AATTCAGAAGAGAGGAAGCA+GGG | 0.622815 | 4_1:-82803273 | None:intergenic |
| TTCGGCGCAAACTTGGCACT+AGG | 0.622860 | 4_1:-82804536 | None:intergenic |
| AGAGCAAAGGGTGAGAAACA+AGG | 0.631128 | 4_1:-82803182 | None:intergenic |
| ATCATCTGTTGCTGGTGTGG+AGG | 0.632127 | 4_1:+82805284 | Msa0578240:CDS |
| ATATTGTTACAAATATAAGG+AGG | 0.636102 | 4_1:-82805405 | None:intergenic |
| GGCTGCGAAATTCAGAAGAG+AGG | 0.638717 | 4_1:-82803281 | None:intergenic |
| GCATTGACAACTATTAAATG+TGG | 0.639347 | 4_1:+82804801 | Msa0578240:intron |
| TAAAGATCAGGAGGATCCCA+TGG | 0.641855 | 4_1:+82807582 | Msa0578240:CDS |
| AGAAAATAAGGAGCGACCGG+AGG | 0.647366 | 4_1:+82805789 | Msa0578240:CDS |
| AGAATGGGAATTGTATAAAG+CGG | 0.648772 | 4_1:-82806423 | None:intergenic |
| GTTGCTGTCAAGGAATGCAG+TGG | 0.651362 | 4_1:-82804874 | None:intergenic |
| TATTGTTACAAATATAAGGA+GGG | 0.653546 | 4_1:-82805404 | None:intergenic |
| TACTTCCGGAAAAGTACAAG+AGG | 0.653833 | 4_1:+82805007 | Msa0578240:CDS |
| TCTGGACTATGATACGCCAT+GGG | 0.656583 | 4_1:-82807598 | None:intergenic |
| TGATTGGACAGCGAATCCAC+CGG | 0.662198 | 4_1:-82803337 | None:intergenic |
| AGAGGTTGCAACAACTGAGG+AGG | 0.662600 | 4_1:+82807546 | Msa0578240:CDS |
| ATGACCGTGATAAAAGCTCA+AGG | 0.662857 | 4_1:+82805307 | Msa0578240:CDS |
| TTATTCGTAAAGGATGATGT+CGG | 0.671321 | 4_1:-82806744 | None:intergenic |
| GGAAGAGGTTGCAACAACTG+AGG | 0.674245 | 4_1:+82807543 | Msa0578240:intron |
| TGCTGGTGCTAATAGTGAAG+AGG | 0.679934 | 4_1:+82806322 | Msa0578240:CDS |
| ACTTGAAGAAAATGATGACG+AGG | 0.685696 | 4_1:+82805434 | Msa0578240:CDS |
| GTTCTTCCCATCTACAGACG+AGG | 0.708904 | 4_1:-82804612 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATTAAATTAATTAAGA+TGG | - | chr4_1:82804189-82804208 | None:intergenic | 10.0% |
| !!! | TTATTTTTTATTTATACGTA+CGG | + | chr4_1:82804301-82804320 | Msa0578240:intron | 10.0% |
| !!! | TTTCATTTGTAATTTTTATT+AGG | + | chr4_1:82805221-82805240 | Msa0578240:intron | 10.0% |
| !! | TTAAAAAAATATAATTGACA+AGG | - | chr4_1:82806114-82806133 | None:intergenic | 10.0% |
| !!! | GTTTTTTATTTTTCAAAACT+TGG | + | chr4_1:82803439-82803458 | Msa0578240:intron | 15.0% |
| !!! | CTTAATTAATTTAATTTCTC+AGG | + | chr4_1:82804190-82804209 | Msa0578240:intron | 15.0% |
| !!! | AGTTAAATTTGCTTATATTT+AGG | - | chr4_1:82804368-82804387 | None:intergenic | 15.0% |
| !!! | ATAAGCAAATTTAACTTTTT+AGG | + | chr4_1:82804372-82804391 | Msa0578240:intron | 15.0% |
| !! | TCTATATTGTTACAAATATA+AGG | - | chr4_1:82805411-82805430 | None:intergenic | 15.0% |
| !! | AATATAAATCTATTTACTAC+TGG | - | chr4_1:82806256-82806275 | None:intergenic | 15.0% |
| !!! | CTATGTTTTAAAAAAATGAA+TGG | - | chr4_1:82806629-82806648 | None:intergenic | 15.0% |
| !!! | CATTCATTTTTTTAAAACAT+AGG | + | chr4_1:82806627-82806646 | Msa0578240:intron | 15.0% |
| !!! | TTGTTTTGTTTTATATTTTG+AGG | + | chr4_1:82807054-82807073 | Msa0578240:intron | 15.0% |
| !! | ATATTAAGGTTTAAATTACA+TGG | - | chr4_1:82807254-82807273 | None:intergenic | 15.0% |
| !! | TAAGAAATATTACAATTATG+TGG | - | chr4_1:82807472-82807491 | None:intergenic | 15.0% |
| !! | GTTACAAATTTATGATATAT+TGG | - | chr4_1:82807845-82807864 | None:intergenic | 15.0% |
| !! | ATTGTGATCAAATAAGTTTA+GGG | - | chr4_1:82803402-82803421 | None:intergenic | 20.0% |
| !!! | TTTATTTTTCAAAACTTGGT+TGG | + | chr4_1:82803443-82803462 | Msa0578240:intron | 20.0% |
| !! | TGTTTATCATGTTTACTTAA+TGG | + | chr4_1:82804077-82804096 | Msa0578240:intron | 20.0% |
| !!! | AGTCAAATTTGCTTATATTT+AGG | + | chr4_1:82804465-82804484 | Msa0578240:intron | 20.0% |
| !!! | ATTATATTCTTTTTGTAGCT+CGG | + | chr4_1:82804513-82804532 | Msa0578240:intron | 20.0% |
| !! | TATTGTTACAAATATAAGGA+GGG | - | chr4_1:82805407-82805426 | None:intergenic | 20.0% |
| !! | ATATTGTTACAAATATAAGG+AGG | - | chr4_1:82805408-82805427 | None:intergenic | 20.0% |
| !! | AAGTTCAAAAAAGAAATATG+TGG | + | chr4_1:82805497-82805516 | Msa0578240:CDS | 20.0% |
| !!! | ATTACTAATTTTGTCTTTTC+TGG | + | chr4_1:82806562-82806581 | Msa0578240:intron | 20.0% |
| !!! | ATGATTCAACAAATTTTTTC+TGG | + | chr4_1:82806679-82806698 | Msa0578240:CDS | 20.0% |
| !!! | AGATCATCATATTTTTAAGT+CGG | + | chr4_1:82806927-82806946 | Msa0578240:intron | 20.0% |
| !!! | TTTGTTAATGTTTTAGAATC+TGG | - | chr4_1:82807969-82807988 | None:intergenic | 20.0% |
| ! | TCTATAATTCAGATAAGAGA+GGG | - | chr4_1:82803244-82803263 | None:intergenic | 25.0% |
| ! | TTCTATAATTCAGATAAGAG+AGG | - | chr4_1:82803245-82803264 | None:intergenic | 25.0% |
| !!! | TTTGATTTGTCTTGAATGAT+TGG | - | chr4_1:82803356-82803375 | None:intergenic | 25.0% |
| ! | TCAAGACAAATCAAAAGAAA+AGG | + | chr4_1:82803361-82803380 | Msa0578240:five_prime_UTR | 25.0% |
| ! | GATTGTGATCAAATAAGTTT+AGG | - | chr4_1:82803403-82803422 | None:intergenic | 25.0% |
| ! | CTCATATTATAGTAAGGTAT+TGG | - | chr4_1:82803498-82803517 | None:intergenic | 25.0% |
| ! | ATACCTTACTATAATATGAG+TGG | + | chr4_1:82803498-82803517 | Msa0578240:intron | 25.0% |
| !! | TTTTGCTAATTAAAGTAGAC+AGG | - | chr4_1:82803868-82803887 | None:intergenic | 25.0% |
| ! | AAGTCAGCAATATAATATGT+TGG | - | chr4_1:82804048-82804067 | None:intergenic | 25.0% |
| ! | TATAATTATAATACTCCCTC+CGG | + | chr4_1:82804341-82804360 | Msa0578240:intron | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+CGG | - | chr4_1:82804470-82804489 | None:intergenic | 25.0% |
| ! | CATTCAATTAATGATGTATG+TGG | + | chr4_1:82804397-82804416 | Msa0578240:intron | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+CGG | + | chr4_1:82804470-82804489 | Msa0578240:intron | 25.0% |
| ! | AACATAACTTACCATTATTG+AGG | - | chr4_1:82804688-82804707 | None:intergenic | 25.0% |
| ! | CTAGATATGAAATGATTCAA+CGG | - | chr4_1:82804782-82804801 | None:intergenic | 25.0% |
| !!! | ATTCATTCCATTTTTACTTC+CGG | + | chr4_1:82804993-82805012 | Msa0578240:CDS | 25.0% |
| ! | TGTAAAAAATCAGCTAATGT+AGG | - | chr4_1:82805100-82805119 | None:intergenic | 25.0% |
| ! | AAACTCAAACTCATTAATTG+AGG | + | chr4_1:82805365-82805384 | Msa0578240:CDS | 25.0% |
| ! | AAGAAATATGTGGCTAAAAA+TGG | + | chr4_1:82805507-82805526 | Msa0578240:CDS | 25.0% |
| ! | AAAAAAAGCAAGAAGGAAAA+TGG | + | chr4_1:82805540-82805559 | Msa0578240:CDS | 25.0% |
| ! | TTCTCAATCAATTTCTCTTA+GGG | + | chr4_1:82805750-82805769 | Msa0578240:CDS | 25.0% |
| !! | TCTTAGCAATTGTTATTAGT+AGG | + | chr4_1:82805846-82805865 | Msa0578240:intron | 25.0% |
| !! | AATTGTTATTAGTAGGCTTA+TGG | + | chr4_1:82805853-82805872 | Msa0578240:intron | 25.0% |
| ! | ATGATGGTAAATAAGATGTT+TGG | - | chr4_1:82806233-82806252 | None:intergenic | 25.0% |
| !! | TTTAAAATATTTAGCTGCAG+TGG | + | chr4_1:82806281-82806300 | Msa0578240:intron | 25.0% |
| !! | TATACAATTCCCATTCTTTT+AGG | + | chr4_1:82806429-82806448 | Msa0578240:CDS | 25.0% |
| !! | ATACAATTCCCATTCTTTTA+GGG | + | chr4_1:82806430-82806449 | Msa0578240:CDS | 25.0% |
| !! | GAATACCTCATAAAACTTTT+CGG | - | chr4_1:82806492-82806511 | None:intergenic | 25.0% |
| !! | ATTTTGTCTTTTCTGGATTT+AGG | + | chr4_1:82806569-82806588 | Msa0578240:intron | 25.0% |
| ! | GTTGAATCATTGTAAAATCT+AGG | - | chr4_1:82806669-82806688 | None:intergenic | 25.0% |
| ! | TAAAATGTTATTCCACATCA+AGG | - | chr4_1:82806878-82806897 | None:intergenic | 25.0% |
| !!! | TTTTGAGGTCTATATTCATT+TGG | + | chr4_1:82807069-82807088 | Msa0578240:intron | 25.0% |
| ! | GATGTTTGTGAGTTAAAATT+TGG | + | chr4_1:82807159-82807178 | Msa0578240:intron | 25.0% |
| ! | GAAGTAAATTTGAGTAACAA+AGG | - | chr4_1:82807232-82807251 | None:intergenic | 25.0% |
| ! | TATACGTTGCTTCTATATTA+AGG | - | chr4_1:82807268-82807287 | None:intergenic | 25.0% |
| !! | TGTATAAAATGGATTCTCAA+GGG | - | chr4_1:82807323-82807342 | None:intergenic | 25.0% |
| !! | TTGTATAAAATGGATTCTCA+AGG | - | chr4_1:82807324-82807343 | None:intergenic | 25.0% |
| !! | TTGAGAATCCATTTTATACA+AGG | + | chr4_1:82807323-82807342 | Msa0578240:intron | 25.0% |
| !! | TGAGAATCCATTTTATACAA+GGG | + | chr4_1:82807324-82807343 | Msa0578240:intron | 25.0% |
| ! | ATATGACGTAAAAACTTTCA+AGG | + | chr4_1:82807375-82807394 | Msa0578240:intron | 25.0% |
| ! | TTCTGAATCTATAATTGAAG+TGG | - | chr4_1:82807434-82807453 | None:intergenic | 25.0% |
| AAGCCACTCATATTATAGTA+AGG | - | chr4_1:82803504-82803523 | None:intergenic | 30.0% | |
| CTTATGTTTAACTATCTCTC+TGG | + | chr4_1:82803533-82803552 | Msa0578240:intron | 30.0% | |
| GTTGTTTGAAGAAATTGAAG+TGG | + | chr4_1:82803674-82803693 | Msa0578240:intron | 30.0% | |
| TTATACTACTCTAAACAGCA+TGG | - | chr4_1:82803713-82803732 | None:intergenic | 30.0% | |
| GTATAATGATTACTCGTGTT+TGG | + | chr4_1:82803727-82803746 | Msa0578240:intron | 30.0% | |
| TTGCAGATTGAATGAAGTTA+GGG | + | chr4_1:82803813-82803832 | Msa0578240:intron | 30.0% | |
| ATAGAGAGGTGGTTTATTTA+AGG | - | chr4_1:82803895-82803914 | None:intergenic | 30.0% | |
| ! | TTTAAAACAGAGAGATAGAG+AGG | - | chr4_1:82803909-82803928 | None:intergenic | 30.0% |
| !! | TTCTGGGTTTTTAACTATTG+CGG | + | chr4_1:82803995-82804014 | Msa0578240:intron | 30.0% |
| TATCATCAAAAAGATCCATG+AGG | - | chr4_1:82804228-82804247 | None:intergenic | 30.0% | |
| GATGTATGTGGTTCATATTA+TGG | + | chr4_1:82804409-82804428 | Msa0578240:intron | 30.0% | |
| ATATTACATTATACTCCCTC+CGG | - | chr4_1:82804492-82804511 | None:intergenic | 30.0% | |
| TAACTTACCATTATTGAGGT+TGG | - | chr4_1:82804684-82804703 | None:intergenic | 30.0% | |
| ! | GCATTGACAACTATTAAATG+TGG | + | chr4_1:82804801-82804820 | Msa0578240:intron | 30.0% |
| AATGGAATGAATGTTGTTCT+CGG | - | chr4_1:82804985-82805004 | None:intergenic | 30.0% | |
| ! | TACTTTTCCGGAAGTAAAAA+TGG | - | chr4_1:82805003-82805022 | None:intergenic | 30.0% |
| ! | AATGTCTACTTCTTTTCCTA+TGG | - | chr4_1:82805134-82805153 | None:intergenic | 30.0% |
| TTTATTAGGATGCTAATGAG+AGG | + | chr4_1:82805235-82805254 | Msa0578240:intron | 30.0% | |
| ATGAGAGGAAAAAATCTCTA+AGG | + | chr4_1:82805250-82805269 | Msa0578240:CDS | 30.0% | |
| TCATTAATTGAGGATGATGA+TGG | + | chr4_1:82805375-82805394 | Msa0578240:CDS | 30.0% | |
| AGCATACAAAAAAAGCAAGA+AGG | + | chr4_1:82805533-82805552 | Msa0578240:CDS | 30.0% | |
| ! | GAAGAATGAGAGAACTTTTT+GGG | - | chr4_1:82805591-82805610 | None:intergenic | 30.0% |
| ! | AGAAGAATGAGAGAACTTTT+TGG | - | chr4_1:82805592-82805611 | None:intergenic | 30.0% |
| AAAAGTTCTCTCATTCTTCT+CGG | + | chr4_1:82805592-82805611 | Msa0578240:CDS | 30.0% | |
| GTTCTCAATCAATTTCTCTT+AGG | + | chr4_1:82805749-82805768 | Msa0578240:CDS | 30.0% | |
| TCTTGCAATTGCAGAAAATA+AGG | + | chr4_1:82805777-82805796 | Msa0578240:CDS | 30.0% | |
| TTGCTAAGAATTGTAACACA+AGG | - | chr4_1:82805835-82805854 | None:intergenic | 30.0% | |
| GTGTATTATCAAAGCAGTAT+TGG | + | chr4_1:82805968-82805987 | Msa0578240:intron | 30.0% | |
| CACACATATCTTAACTTCTT+AGG | - | chr4_1:82806024-82806043 | None:intergenic | 30.0% | |
| AAATCGTGAAAGCTAACAAA+GGG | - | chr4_1:82806087-82806106 | None:intergenic | 30.0% | |
| TAAATCGTGAAAGCTAACAA+AGG | - | chr4_1:82806088-82806107 | None:intergenic | 30.0% | |
| ATCTATTTACTACTGGATGA+TGG | - | chr4_1:82806249-82806268 | None:intergenic | 30.0% | |
| !!! | ACTTTTAGTTCAGATGATGA+TGG | + | chr4_1:82806347-82806366 | Msa0578240:CDS | 30.0% |
| AGAATGGGAATTGTATAAAG+CGG | - | chr4_1:82806426-82806445 | None:intergenic | 30.0% | |
| !! | AGATACCGAAAAGTTTTATG+AGG | + | chr4_1:82806484-82806503 | Msa0578240:CDS | 30.0% |
| !!! | TTTTAAAACATAGGCTCTGA+AGG | + | chr4_1:82806636-82806655 | Msa0578240:intron | 30.0% |
| TTATTCGTAAAGGATGATGT+CGG | - | chr4_1:82806747-82806766 | None:intergenic | 30.0% | |
| ATAGCATCAGTTATTCGTAA+AGG | - | chr4_1:82806757-82806776 | None:intergenic | 30.0% | |
| TCATATAGTACATGATCAGT+AGG | + | chr4_1:82806831-82806850 | Msa0578240:intron | 30.0% | |
| CATATAGTACATGATCAGTA+GGG | + | chr4_1:82806832-82806851 | Msa0578240:intron | 30.0% | |
| !!! | CCAAGTAAAAGTGCTAATTT+TGG | - | chr4_1:82807203-82807222 | None:intergenic | 30.0% |
| ! | CCAAAATTAGCACTTTTACT+TGG | + | chr4_1:82807200-82807219 | Msa0578240:intron | 30.0% |
| TGTTGTTCCCTTGTATAAAA+TGG | - | chr4_1:82807334-82807353 | None:intergenic | 30.0% | |
| GTCATATCACATATACATGA+TGG | - | chr4_1:82807362-82807381 | None:intergenic | 30.0% | |
| ATATGTGTCTTTATTGTGCT+AGG | - | chr4_1:82807406-82807425 | None:intergenic | 30.0% | |
| AAGAGTCTTGAATATTTGCA+AGG | - | chr4_1:82807507-82807526 | None:intergenic | 30.0% | |
| CATATGAAACATCATATACC+TGG | - | chr4_1:82807798-82807817 | None:intergenic | 30.0% | |
| ! | ACCTTAATATGTTTTCTCGA+AGG | + | chr4_1:82807863-82807882 | Msa0578240:intron | 30.0% |
| GCTATTTATTTGTGTTCTAC+TGG | + | chr4_1:82807885-82807904 | Msa0578240:intron | 30.0% | |
| AAGCAAATTTCTCTGATAAG+AGG | + | chr4_1:82807942-82807961 | Msa0578240:CDS | 30.0% | |
| TGAAAATGAGAGTGAAGAGA+GGG | - | chr4_1:82803214-82803233 | None:intergenic | 35.0% | |
| TTGAAAATGAGAGTGAAGAG+AGG | - | chr4_1:82803215-82803234 | None:intergenic | 35.0% | |
| !! | AACGAGAATGATGGATACAT+TGG | - | chr4_1:82803593-82803612 | None:intergenic | 35.0% |
| AAGCATGTAAACGAGAATGA+TGG | - | chr4_1:82803602-82803621 | None:intergenic | 35.0% | |
| CTTGCAGATTGAATGAAGTT+AGG | + | chr4_1:82803812-82803831 | Msa0578240:intron | 35.0% | |
| !! | GTTTTAAATTCAAACCACGC+CGG | + | chr4_1:82803921-82803940 | Msa0578240:intron | 35.0% |
| AATCACATAGAAGACATAGC+CGG | - | chr4_1:82803943-82803962 | None:intergenic | 35.0% | |
| !! | TCCTGGTTTTCGATTTTTCT+GGG | + | chr4_1:82803979-82803998 | Msa0578240:intron | 35.0% |
| CGGACGCTATTACATTAATA+AGG | + | chr4_1:82804015-82804034 | Msa0578240:intron | 35.0% | |
| CGTAAGCAATAAACTGGAAA+GGG | - | chr4_1:82804115-82804134 | None:intergenic | 35.0% | |
| CCTTTCCAGTTTATTGCTTA+CGG | + | chr4_1:82804113-82804132 | Msa0578240:intron | 35.0% | |
| !!! | GACTGTTTTGATTTGACCTT+CGG | - | chr4_1:82804557-82804576 | None:intergenic | 35.0% |
| ATCAAAACAGTCCTTACGAA+AGG | + | chr4_1:82804565-82804584 | Msa0578240:CDS | 35.0% | |
| TGCAGATATTTCCTTTCGTA+AGG | - | chr4_1:82804579-82804598 | None:intergenic | 35.0% | |
| ! | TTCTACCTCTTGTACTTTTC+CGG | - | chr4_1:82805015-82805034 | None:intergenic | 35.0% |
| AATCAGCTAATGTAGGACTA+CGG | - | chr4_1:82805093-82805112 | None:intergenic | 35.0% | |
| ! | ACTTGAAGAAAATGATGACG+AGG | + | chr4_1:82805434-82805453 | Msa0578240:CDS | 35.0% |
| ! | AAGTATTTTCATTCCCACAG+TGG | + | chr4_1:82805696-82805715 | Msa0578240:intron | 35.0% |
| TTTCTGCATAGGGAAACAAA+TGG | - | chr4_1:82805899-82805918 | None:intergenic | 35.0% | |
| TTGTTTCCCTATGCAGAAAA+AGG | + | chr4_1:82805900-82805919 | Msa0578240:intron | 35.0% | |
| TCGTTGTATGTGATTGAGAT+AGG | + | chr4_1:82806049-82806068 | Msa0578240:intron | 35.0% | |
| AAAATATTTAGCTGCAGTGG+TGG | + | chr4_1:82806284-82806303 | Msa0578240:intron | 35.0% | |
| AAATATTTAGCTGCAGTGGT+GGG | + | chr4_1:82806285-82806304 | Msa0578240:intron | 35.0% | |
| ! | TACTAGCTTGATCATACTCT+TGG | - | chr4_1:82806382-82806401 | None:intergenic | 35.0% |
| ! | TGACTTGTCCCTAAAAGAAT+GGG | - | chr4_1:82806441-82806460 | None:intergenic | 35.0% |
| ! | GTCTTTTCTGGATTTAGGAA+TGG | + | chr4_1:82806574-82806593 | Msa0578240:intron | 35.0% |
| GCTATTAATAGTCGTTCATC+AGG | + | chr4_1:82806772-82806791 | Msa0578240:CDS | 35.0% | |
| TCTTTATCTACTCCTTGATG+TGG | + | chr4_1:82806863-82806882 | Msa0578240:intron | 35.0% | |
| GCATTAGTGGTAGAAATTTG+TGG | - | chr4_1:82806967-82806986 | None:intergenic | 35.0% | |
| TTCTACCACTAATGCAAATC+AGG | + | chr4_1:82806972-82806991 | Msa0578240:CDS | 35.0% | |
| AGAGTGCATACATTAATTCC+AGG | - | chr4_1:82807030-82807049 | None:intergenic | 35.0% | |
| ! | GTGATGATGACTTACAGAAA+TGG | + | chr4_1:82807635-82807654 | Msa0578240:CDS | 35.0% |
| GCCTTCGAGAAAACATATTA+AGG | - | chr4_1:82807867-82807886 | None:intergenic | 35.0% | |
| !!! | TTGTGTTCTACTGGTTTTGT+AGG | + | chr4_1:82807894-82807913 | Msa0578240:intron | 35.0% |
| !!! | TGTGTTCTACTGGTTTTGTA+GGG | + | chr4_1:82807895-82807914 | Msa0578240:intron | 35.0% |
| AATTCAGAAGAGAGGAAGCA+GGG | - | chr4_1:82803276-82803295 | None:intergenic | 40.0% | |
| AAATTCAGAAGAGAGGAAGC+AGG | - | chr4_1:82803277-82803296 | None:intergenic | 40.0% | |
| GATTGAATGAAGTTAGGGCA+AGG | + | chr4_1:82803818-82803837 | Msa0578240:intron | 40.0% | |
| AAGTTAGGGCAAGGATGTAA+AGG | + | chr4_1:82803827-82803846 | Msa0578240:intron | 40.0% | |
| AAAACAGAGAGATAGAGAGG+TGG | - | chr4_1:82803906-82803925 | None:intergenic | 40.0% | |
| !! | GTCCTGGTTTTCGATTTTTC+TGG | + | chr4_1:82803978-82803997 | Msa0578240:intron | 40.0% |
| ACCCAGAAAAATCGAAAACC+AGG | - | chr4_1:82803983-82804002 | None:intergenic | 40.0% | |
| CCGTAAGCAATAAACTGGAA+AGG | - | chr4_1:82804116-82804135 | None:intergenic | 40.0% | |
| CCATACCGTAAGCAATAAAC+TGG | - | chr4_1:82804121-82804140 | None:intergenic | 40.0% | |
| CCAGTTTATTGCTTACGGTA+TGG | + | chr4_1:82804118-82804137 | Msa0578240:intron | 40.0% | |
| ATCAAAAAGATCCATGAGGC+AGG | - | chr4_1:82804224-82804243 | None:intergenic | 40.0% | |
| ACGTACGGTTGTTATGTACT+TGG | + | chr4_1:82804316-82804335 | Msa0578240:intron | 40.0% | |
| ! | TGCTTATATTTAGGACCGGA+GGG | - | chr4_1:82804474-82804493 | None:intergenic | 40.0% |
| ! | TTGCTTATATTTAGGACCGG+AGG | - | chr4_1:82804473-82804492 | None:intergenic | 40.0% |
| ! | TTGCTTATATTTAGGACCGG+AGG | + | chr4_1:82804473-82804492 | Msa0578240:intron | 40.0% |
| ! | TGCTTATATTTAGGACCGGA+GGG | + | chr4_1:82804474-82804493 | Msa0578240:intron | 40.0% |
| !! | ACCATTATTGAGGTTGGTCT+CGG | - | chr4_1:82804678-82804697 | None:intergenic | 40.0% |
| ! | GCAAACTTTTGTTGCTGTCA+AGG | - | chr4_1:82804887-82804906 | None:intergenic | 40.0% |
| TTGCAAGACAGCCTAAATGT+TGG | + | chr4_1:82804921-82804940 | Msa0578240:CDS | 40.0% | |
| !! | CACTTCTGAAGCCAACATTT+AGG | - | chr4_1:82804935-82804954 | None:intergenic | 40.0% |
| ! | TACTTCCGGAAAAGTACAAG+AGG | + | chr4_1:82805007-82805026 | Msa0578240:CDS | 40.0% |
| TTACAGCAAGACGTTACCAT+AGG | + | chr4_1:82805115-82805134 | Msa0578240:intron | 40.0% | |
| CGTAAAAGATCATCTGTTGC+TGG | + | chr4_1:82805276-82805295 | Msa0578240:CDS | 40.0% | |
| ATGACCGTGATAAAAGCTCA+AGG | + | chr4_1:82805307-82805326 | Msa0578240:CDS | 40.0% | |
| !! | GAATGAGAGAACTTTTTGGG+TGG | - | chr4_1:82805588-82805607 | None:intergenic | 40.0% |
| CTGCTGGATGATTATGAACT+TGG | + | chr4_1:82805727-82805746 | Msa0578240:CDS | 40.0% | |
| TAGTTGAGAATACCTACCTC+CGG | - | chr4_1:82805808-82805827 | None:intergenic | 40.0% | |
| TTTCCCTATGCAGAAAAAGG+AGG | + | chr4_1:82805903-82805922 | Msa0578240:intron | 40.0% | |
| ! | TTGCCTCCTTTTTCTGCATA+GGG | - | chr4_1:82805909-82805928 | None:intergenic | 40.0% |
| ! | TTTGCCTCCTTTTTCTGCAT+AGG | - | chr4_1:82805910-82805929 | None:intergenic | 40.0% |
| CAAAATCTTCCACCAATCGA+AGG | + | chr4_1:82805926-82805945 | Msa0578240:CDS | 40.0% | |
| AATTCACTGCACATCTTACG+TGG | + | chr4_1:82806205-82806224 | Msa0578240:intron | 40.0% | |
| AATATTTAGCTGCAGTGGTG+GGG | + | chr4_1:82806286-82806305 | Msa0578240:intron | 40.0% | |
| ! | GTGACTTGTCCCTAAAAGAA+TGG | - | chr4_1:82806442-82806461 | None:intergenic | 40.0% |
| !! | TTTTAGGGACAAGTCACCTA+GGG | + | chr4_1:82806445-82806464 | Msa0578240:CDS | 40.0% |
| ACAAGTCACCTAGGGTAAAA+TGG | + | chr4_1:82806453-82806472 | Msa0578240:CDS | 40.0% | |
| ! | TGTTTCGACCATTTTACCCT+AGG | - | chr4_1:82806464-82806483 | None:intergenic | 40.0% |
| TTACTTGTCTGTGCTCTTCA+TGG | + | chr4_1:82806808-82806827 | Msa0578240:intron | 40.0% | |
| ! | AAAATGGATTCTCAAGGGAG+CGG | - | chr4_1:82807318-82807337 | None:intergenic | 40.0% |
| CTCTTGTAATCTGAATGTGC+AGG | + | chr4_1:82807522-82807541 | Msa0578240:intron | 40.0% | |
| TAATCTGAATGTGCAGGAAG+AGG | + | chr4_1:82807528-82807547 | Msa0578240:intron | 40.0% | |
| !! | CAGTGCTGATGTTAAAGATC+AGG | + | chr4_1:82807570-82807589 | Msa0578240:CDS | 40.0% |
| TGCTGATGTTAAAGATCAGG+AGG | + | chr4_1:82807573-82807592 | Msa0578240:CDS | 40.0% | |
| TCACTATCATCAGATTGCTC+TGG | - | chr4_1:82807619-82807638 | None:intergenic | 40.0% | |
| GTAATACTTTCTCGAAGTCC+AGG | + | chr4_1:82807777-82807796 | Msa0578240:CDS | 40.0% | |
| !!! | TGGTTTTGTAGGGAGACTTT+TGG | + | chr4_1:82807905-82807924 | Msa0578240:intron | 40.0% |
| AGAGCAAAGGGTGAGAAACA+AGG | - | chr4_1:82803185-82803204 | None:intergenic | 45.0% | |
| AGAGGGAGGAAAAGAGCAAA+GGG | - | chr4_1:82803197-82803216 | None:intergenic | 45.0% | |
| AAATGAGAGTGAAGAGAGGG+AGG | - | chr4_1:82803211-82803230 | None:intergenic | 45.0% | |
| TATCTCCCTGTAGCACTTCT+TGG | + | chr4_1:82803647-82803666 | Msa0578240:intron | 45.0% | |
| !! | CTATGCCAAGAAGTGCTACA+GGG | - | chr4_1:82803655-82803674 | None:intergenic | 45.0% |
| !! | ACTATGCCAAGAAGTGCTAC+AGG | - | chr4_1:82803656-82803675 | None:intergenic | 45.0% |
| ACTCGCTTGCGACTTAAGAA+GGG | - | chr4_1:82803779-82803798 | None:intergenic | 45.0% | |
| TACTCGCTTGCGACTTAAGA+AGG | - | chr4_1:82803780-82803799 | None:intergenic | 45.0% | |
| CAAGGATGTAAAGGCCTAGT+CGG | + | chr4_1:82803836-82803855 | Msa0578240:intron | 45.0% | |
| !! | TTATCACCGCTTTTCTGTCC+TGG | + | chr4_1:82803962-82803981 | Msa0578240:intron | 45.0% |
| CGAAAACCAGGACAGAAAAG+CGG | - | chr4_1:82803971-82803990 | None:intergenic | 45.0% | |
| TTATTGCTTACGGTATGGCG+AGG | + | chr4_1:82804123-82804142 | Msa0578240:intron | 45.0% | |
| AAAAGATCCATGAGGCAGGT+TGG | - | chr4_1:82804220-82804239 | None:intergenic | 45.0% | |
| TGCTGCACGTGGTTAGTAAT+GGG | + | chr4_1:82804264-82804283 | Msa0578240:intron | 45.0% | |
| ATGCTACCTCGTCTGTAGAT+GGG | + | chr4_1:82804606-82804625 | Msa0578240:CDS | 45.0% | |
| ! | AATGGATTTAGTGACGGTGG+GGG | - | chr4_1:82804654-82804673 | None:intergenic | 45.0% |
| ! | GAATGGATTTAGTGACGGTG+GGG | - | chr4_1:82804655-82804674 | None:intergenic | 45.0% |
| ! | GGAATGGATTTAGTGACGGT+GGG | - | chr4_1:82804656-82804675 | None:intergenic | 45.0% |
| ! | CTCGGGAATGGATTTAGTGA+CGG | - | chr4_1:82804660-82804679 | None:intergenic | 45.0% |
| !! | CCATTATTGAGGTTGGTCTC+GGG | - | chr4_1:82804677-82804696 | None:intergenic | 45.0% |
| TGTCAAGGAATGCAGTGGAT+GGG | - | chr4_1:82804872-82804891 | None:intergenic | 45.0% | |
| AAGATCATCTGTTGCTGGTG+TGG | + | chr4_1:82805281-82805300 | Msa0578240:CDS | 45.0% | |
| ! | GCTGCCTTGAGCTTTTATCA+CGG | - | chr4_1:82805314-82805333 | None:intergenic | 45.0% |
| ! | AAATGATGACGAGGACGAAG+TGG | + | chr4_1:82805443-82805462 | Msa0578240:CDS | 45.0% |
| TCTCGGCGAAGAAAAAGACA+AGG | + | chr4_1:82805609-82805628 | Msa0578240:CDS | 45.0% | |
| TGCAGAAAATAAGGAGCGAC+CGG | + | chr4_1:82805786-82805805 | Msa0578240:CDS | 45.0% | |
| ! | TGTTGCTTACCTTCGATTGG+TGG | - | chr4_1:82805938-82805957 | None:intergenic | 45.0% |
| !! | CTGTGTTGCTTACCTTCGAT+TGG | - | chr4_1:82805941-82805960 | None:intergenic | 45.0% |
| GGGGATTTCTTTCATGATGC+TGG | + | chr4_1:82806305-82806324 | Msa0578240:CDS | 45.0% | |
| ! | TGCTGGTGCTAATAGTGAAG+AGG | + | chr4_1:82806322-82806341 | Msa0578240:CDS | 45.0% |
| !! | CTTTTAGGGACAAGTCACCT+AGG | + | chr4_1:82806444-82806463 | Msa0578240:CDS | 45.0% |
| !! | ACATAGGCTCTGAAGGAGTT+TGG | + | chr4_1:82806643-82806662 | Msa0578240:intron | 45.0% |
| ! | GGCTTCCTGATTTGCATTAG+TGG | - | chr4_1:82806980-82806999 | None:intergenic | 45.0% |
| GTCTTCAGTAGTGTCTTCAG+TGG | - | chr4_1:82807001-82807020 | None:intergenic | 45.0% | |
| ACTACTGAAGACATGTCACC+TGG | + | chr4_1:82807009-82807028 | Msa0578240:CDS | 45.0% | |
| ! | AAATGGATTCTCAAGGGAGC+GGG | - | chr4_1:82807317-82807336 | None:intergenic | 45.0% |
| TAAAGATCAGGAGGATCCCA+TGG | + | chr4_1:82807582-82807601 | Msa0578240:CDS | 45.0% | |
| TCTGGACTATGATACGCCAT+GGG | - | chr4_1:82807601-82807620 | None:intergenic | 45.0% | |
| GAGAGGGAGGAAAAGAGCAA+AGG | - | chr4_1:82803198-82803217 | None:intergenic | 50.0% | |
| GGCTGCGAAATTCAGAAGAG+AGG | - | chr4_1:82803284-82803303 | None:intergenic | 50.0% | |
| GACCTCAAACCCCAACTTTC+CGG | + | chr4_1:82803318-82803337 | Msa0578240:five_prime_UTR | 50.0% | |
| AGCGAATCCACCGGAAAGTT+GGG | - | chr4_1:82803331-82803350 | None:intergenic | 50.0% | |
| TGATTGGACAGCGAATCCAC+CGG | - | chr4_1:82803340-82803359 | None:intergenic | 50.0% | |
| TAGACAGGAGAAGACCGACT+AGG | - | chr4_1:82803853-82803872 | None:intergenic | 50.0% | |
| CATTACTAACCACGTGCAGC+AGG | - | chr4_1:82804265-82804284 | None:intergenic | 50.0% | |
| CTGCTGCACGTGGTTAGTAA+TGG | + | chr4_1:82804263-82804282 | Msa0578240:intron | 50.0% | |
| TTTGACCTTCGGCGCAAACT+TGG | - | chr4_1:82804546-82804565 | None:intergenic | 50.0% | |
| CATGCTACCTCGTCTGTAGA+TGG | + | chr4_1:82804605-82804624 | Msa0578240:CDS | 50.0% | |
| GTTCTTCCCATCTACAGACG+AGG | - | chr4_1:82804615-82804634 | None:intergenic | 50.0% | |
| ! | GGGAATGGATTTAGTGACGG+TGG | - | chr4_1:82804657-82804676 | None:intergenic | 50.0% |
| !! | ATTGAGGTTGGTCTCGGGAA+TGG | - | chr4_1:82804672-82804691 | None:intergenic | 50.0% |
| CCCGAGACCAACCTCAATAA+TGG | + | chr4_1:82804674-82804693 | Msa0578240:CDS | 50.0% | |
| GTCAAGGAATGCAGTGGATG+GGG | - | chr4_1:82804871-82804890 | None:intergenic | 50.0% | |
| CTGTCAAGGAATGCAGTGGA+TGG | - | chr4_1:82804873-82804892 | None:intergenic | 50.0% | |
| GTTGCTGTCAAGGAATGCAG+TGG | - | chr4_1:82804877-82804896 | None:intergenic | 50.0% | |
| !! | GTTGGCTTCAGAAGTGCTTC+AGG | + | chr4_1:82804939-82804958 | Msa0578240:CDS | 50.0% |
| ATCATCTGTTGCTGGTGTGG+AGG | + | chr4_1:82805284-82805303 | Msa0578240:CDS | 50.0% | |
| TTTCATTCCCACAGTGGACC+AGG | + | chr4_1:82805702-82805721 | Msa0578240:intron | 50.0% | |
| CATAATCATCCAGCAGAGCC+TGG | - | chr4_1:82805723-82805742 | None:intergenic | 50.0% | |
| AGAAAATAAGGAGCGACCGG+AGG | + | chr4_1:82805789-82805808 | Msa0578240:CDS | 50.0% | |
| ! | AATGGATTCTCAAGGGAGCG+GGG | - | chr4_1:82807316-82807335 | None:intergenic | 50.0% |
| GGAAGAGGTTGCAACAACTG+AGG | + | chr4_1:82807543-82807562 | Msa0578240:intron | 50.0% | |
| AGAGGTTGCAACAACTGAGG+AGG | + | chr4_1:82807546-82807565 | Msa0578240:CDS | 50.0% | |
| CTCTGGACTATGATACGCCA+TGG | - | chr4_1:82807602-82807621 | None:intergenic | 50.0% | |
| !! | TGAGGTCGCGATTTCGGGTT+CGG | - | chr4_1:82803305-82803324 | None:intergenic | 55.0% |
| ! | GGGTTTGAGGTCGCGATTTC+GGG | - | chr4_1:82803310-82803329 | None:intergenic | 55.0% |
| ! | GGGGTTTGAGGTCGCGATTT+CGG | - | chr4_1:82803311-82803330 | None:intergenic | 55.0% |
| CACCGGAAAGTTGGGGTTTG+AGG | - | chr4_1:82803323-82803342 | None:intergenic | 55.0% | |
| CTCAAACCCCAACTTTCCGG+TGG | + | chr4_1:82803321-82803340 | Msa0578240:five_prime_UTR | 55.0% | |
| GCGAATCCACCGGAAAGTTG+GGG | - | chr4_1:82803330-82803349 | None:intergenic | 55.0% | |
| CAGCGAATCCACCGGAAAGT+TGG | - | chr4_1:82803332-82803351 | None:intergenic | 55.0% | |
| CATAGAAGACATAGCCGGCG+TGG | - | chr4_1:82803938-82803957 | None:intergenic | 55.0% | |
| !! | GATCCATGAGGCAGGTTGGT+TGG | - | chr4_1:82804216-82804235 | None:intergenic | 55.0% |
| TTCGGCGCAAACTTGGCACT+AGG | - | chr4_1:82804539-82804558 | None:intergenic | 55.0% | |
| TAGTGCCAAGTTTGCGCCGA+AGG | + | chr4_1:82804538-82804557 | Msa0578240:CDS | 55.0% | |
| AATAAGGAGCGACCGGAGGT+AGG | + | chr4_1:82805793-82805812 | Msa0578240:intron | 55.0% | |
| ATGGATTCTCAAGGGAGCGG+GGG | - | chr4_1:82807315-82807334 | None:intergenic | 55.0% | |
| AGGCCAACCAACCTGCCTCA+TGG | + | chr4_1:82804210-82804229 | Msa0578240:intron | 60.0% | |
| CTTGAAGCTCCTGCTGCACG+TGG | + | chr4_1:82804253-82804272 | Msa0578240:CDS | 60.0% | |
| AGCAGAGCCTGGTCCACTGT+GGG | - | chr4_1:82805712-82805731 | None:intergenic | 60.0% | |
| CAGCAGAGCCTGGTCCACTG+TGG | - | chr4_1:82805713-82805732 | None:intergenic | 65.0% | |
| CACAGTGGACCAGGCTCTGC+TGG | + | chr4_1:82805711-82805730 | Msa0578240:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 82803155 | 82808010 | 82803155 | ID=Msa0578240;Name=Msa0578240 |
| chr4_1 | mRNA | 82803155 | 82808010 | 82803155 | ID=Msa0578240-mRNA-1;Parent=Msa0578240;Name=Msa0578240-mRNA-1;_AED=0.16;_eAED=0.16;_QI=245|0.75|0.69|0.92|0.91|0.92|13|0|557 |
| chr4_1 | exon | 82803155 | 82803382 | 82803155 | ID=Msa0578240-mRNA-1:exon:30059;Parent=Msa0578240-mRNA-1 |
| chr4_1 | exon | 82804212 | 82804274 | 82804212 | ID=Msa0578240-mRNA-1:exon:30060;Parent=Msa0578240-mRNA-1 |
| chr4_1 | exon | 82804531 | 82804695 | 82804531 | ID=Msa0578240-mRNA-1:exon:30061;Parent=Msa0578240-mRNA-1 |
| chr4_1 | exon | 82804802 | 82805028 | 82804802 | ID=Msa0578240-mRNA-1:exon:30062;Parent=Msa0578240-mRNA-1 |
| chr4_1 | exon | 82805243 | 82805630 | 82805243 | ID=Msa0578240-mRNA-1:exon:30063;Parent=Msa0578240-mRNA-1 |
| chr4_1 | exon | 82805716 | 82805810 | 82805716 | ID=Msa0578240-mRNA-1:exon:30064;Parent=Msa0578240-mRNA-1 |
| chr4_1 | exon | 82805916 | 82805947 | 82805916 | ID=Msa0578240-mRNA-1:exon:30065;Parent=Msa0578240-mRNA-1 |
| chr4_1 | exon | 82806295 | 82806505 | 82806295 | ID=Msa0578240-mRNA-1:exon:30066;Parent=Msa0578240-mRNA-1 |
| chr4_1 | exon | 82806649 | 82806793 | 82806649 | ID=Msa0578240-mRNA-1:exon:30067;Parent=Msa0578240-mRNA-1 |
| chr4_1 | exon | 82806929 | 82807038 | 82806929 | ID=Msa0578240-mRNA-1:exon:30068;Parent=Msa0578240-mRNA-1 |
| chr4_1 | exon | 82807544 | 82807672 | 82807544 | ID=Msa0578240-mRNA-1:exon:30069;Parent=Msa0578240-mRNA-1 |
| chr4_1 | exon | 82807768 | 82807798 | 82807768 | ID=Msa0578240-mRNA-1:exon:30070;Parent=Msa0578240-mRNA-1 |
| chr4_1 | exon | 82807916 | 82808010 | 82807916 | ID=Msa0578240-mRNA-1:exon:30071;Parent=Msa0578240-mRNA-1 |
| chr4_1 | five_prime_UTR | 82803155 | 82803382 | 82803155 | ID=Msa0578240-mRNA-1:five_prime_utr;Parent=Msa0578240-mRNA-1 |
| chr4_1 | five_prime_UTR | 82804212 | 82804228 | 82804212 | ID=Msa0578240-mRNA-1:five_prime_utr;Parent=Msa0578240-mRNA-1 |
| chr4_1 | CDS | 82804229 | 82804274 | 82804229 | ID=Msa0578240-mRNA-1:cds;Parent=Msa0578240-mRNA-1 |
| chr4_1 | CDS | 82804531 | 82804695 | 82804531 | ID=Msa0578240-mRNA-1:cds;Parent=Msa0578240-mRNA-1 |
| chr4_1 | CDS | 82804802 | 82805028 | 82804802 | ID=Msa0578240-mRNA-1:cds;Parent=Msa0578240-mRNA-1 |
| chr4_1 | CDS | 82805243 | 82805630 | 82805243 | ID=Msa0578240-mRNA-1:cds;Parent=Msa0578240-mRNA-1 |
| chr4_1 | CDS | 82805716 | 82805810 | 82805716 | ID=Msa0578240-mRNA-1:cds;Parent=Msa0578240-mRNA-1 |
| chr4_1 | CDS | 82805916 | 82805947 | 82805916 | ID=Msa0578240-mRNA-1:cds;Parent=Msa0578240-mRNA-1 |
| chr4_1 | CDS | 82806295 | 82806505 | 82806295 | ID=Msa0578240-mRNA-1:cds;Parent=Msa0578240-mRNA-1 |
| chr4_1 | CDS | 82806649 | 82806793 | 82806649 | ID=Msa0578240-mRNA-1:cds;Parent=Msa0578240-mRNA-1 |
| chr4_1 | CDS | 82806929 | 82807038 | 82806929 | ID=Msa0578240-mRNA-1:cds;Parent=Msa0578240-mRNA-1 |
| chr4_1 | CDS | 82807544 | 82807672 | 82807544 | ID=Msa0578240-mRNA-1:cds;Parent=Msa0578240-mRNA-1 |
| chr4_1 | CDS | 82807768 | 82807798 | 82807768 | ID=Msa0578240-mRNA-1:cds;Parent=Msa0578240-mRNA-1 |
| chr4_1 | CDS | 82807916 | 82808010 | 82807916 | ID=Msa0578240-mRNA-1:cds;Parent=Msa0578240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
