AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0578850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578850 MtrunA17_Chr3g0134451 38.043 276 138 8 1 262 1 257 1.41e-48 166
Msa0578850 MtrunA17_Chr5g0425181 62.044 137 19 2 128 231 15 151 7.24e-48 159
Msa0578850 MtrunA17_Chr4g0044071 100.000 62 0 0 1 62 1 62 3.16e-37 129
Msa0578850 MtrunA17_Chr5g0425191 93.548 62 4 0 1 62 1 62 1.22e-35 125
Msa0578850 MtrunA17_Chr4g0044081 76.712 73 14 1 148 220 8 77 1.56e-28 105
Msa0578850 MtrunA17_Chr4g0060841 33.624 229 125 6 1 217 1 214 2.18e-28 113
Msa0578850 MtrunA17_Chr5g0425171 73.418 79 16 3 268 341 1 79 1.77e-25 97.8
Msa0578850 MtrunA17_Chr3g0077501 32.323 198 95 2 1 198 1 159 1.00e-23 97.4
Msa0578850 MtrunA17_Chr7g0220121 31.122 196 95 2 1 196 1 156 7.39e-23 95.9
Msa0578850 MtrunA17_Chr7g0246381 67.241 58 19 0 1 58 1 58 8.31e-23 90.5
Msa0578850 MtrunA17_Chr3g0097101 32.973 185 85 3 1 185 16 161 4.89e-22 93.2
Msa0578850 MtrunA17_Chr5g0417661 66.129 62 21 0 1 62 56 117 5.84e-22 90.1
Msa0578850 MtrunA17_Chr7g0220111 57.143 70 30 0 1 70 1 70 7.22e-22 92.8
Msa0578850 MtrunA17_Chr2g0284911 58.571 70 28 1 1 70 16 84 1.00e-21 92.8
Msa0578850 MtrunA17_Chr7g0246431 33.880 183 82 4 1 183 1 144 1.17e-21 91.7
Msa0578850 MtrunA17_Chr5g0420091 55.714 70 31 0 1 70 1 70 1.18e-21 91.7
Msa0578850 MtrunA17_Chr3g0122251 57.143 70 30 0 1 70 1 70 2.58e-21 91.3
Msa0578850 MtrunA17_Chr4g0061671 57.143 70 30 0 1 70 1 70 2.81e-21 89.7
Msa0578850 MtrunA17_Chr6g0455511 57.143 70 30 0 1 70 1 70 4.03e-21 90.9
Msa0578850 MtrunA17_Chr8g0351051 32.258 186 85 3 1 185 1 146 4.72e-21 90.9
Msa0578850 MtrunA17_Chr8g0377561 64.912 57 20 0 1 57 1 57 4.86e-21 86.7
Msa0578850 MtrunA17_Chr8g0380021 67.241 58 19 0 1 58 17 74 5.95e-21 90.5
Msa0578850 MtrunA17_Chr1g0164791 27.092 251 152 8 1 245 1 226 8.29e-21 89.7
Msa0578850 MtrunA17_Chr4g0061691 36.364 176 95 6 1 172 1 163 1.01e-20 89.4
Msa0578850 MtrunA17_Chr1g0173161 62.295 61 23 0 1 61 1 61 2.03e-20 84.3
Msa0578850 MtrunA17_Chr2g0279821 34.392 189 84 4 1 189 1 149 2.62e-20 88.6
Msa0578850 MtrunA17_Chr8g0351041 57.576 66 28 0 1 66 1 66 2.84e-20 86.3
Msa0578850 MtrunA17_Chr8g0351031 57.576 66 28 0 1 66 1 66 4.16e-20 87.4
Msa0578850 MtrunA17_Chr8g0366231 29.474 190 96 2 1 190 1 152 7.41e-20 87.4
Msa0578850 MtrunA17_Chr4g0020221 33.953 215 84 6 1 206 1 166 7.61e-20 87.4
Msa0578850 MtrunA17_Chr5g0420081 30.526 190 94 2 1 190 1 152 9.20e-20 87.0
Msa0578850 MtrunA17_Chr6g0474371 51.429 70 34 0 1 70 1 70 2.87e-19 84.3
Msa0578850 MtrunA17_Chr3g0125241 54.930 71 31 1 1 70 26 96 3.74e-19 84.3
Msa0578850 MtrunA17_Chr4g0057151 57.143 70 29 1 1 70 1 69 4.43e-19 84.3
Msa0578850 MtrunA17_Chr2g0308251 47.945 73 38 0 1 73 1 73 6.47e-19 80.5
Msa0578850 MtrunA17_Chr5g0411691 33.333 189 85 4 1 189 1 148 6.67e-19 84.7
Msa0578850 MtrunA17_Chr5g0404951 64.912 57 20 0 1 57 1 57 1.17e-18 83.6
Msa0578850 MtrunA17_Chr5g0427921 54.098 61 28 0 1 61 1 61 1.32e-18 78.6
Msa0578850 MtrunA17_Chr3g0142191 63.158 57 21 0 1 57 1 57 2.28e-18 82.8
Msa0578850 MtrunA17_Chr5g0412461 33.702 181 81 4 1 181 1 142 3.12e-18 82.4
Msa0578850 MtrunA17_Chr5g0419601 38.211 123 62 3 1 123 8 116 3.70e-18 82.4
Msa0578850 MtrunA17_Chr5g0412271 62.069 58 22 0 1 58 1 58 6.37e-18 81.6
Msa0578850 MtrunA17_Chr4g0049541 38.926 149 79 5 1 148 1 138 1.77e-17 80.1
Msa0578850 MtrunA17_Chr2g0317451 33.708 178 93 6 2 178 9 162 3.04e-17 79.7
Msa0578850 MtrunA17_Chr2g0317481 33.708 178 93 6 2 178 9 162 3.35e-17 79.7
Msa0578850 MtrunA17_Chr5g0427401 48.571 70 35 1 1 70 1 69 4.12e-17 79.3
Msa0578850 MtrunA17_Chr8g0379021 50.704 71 34 1 2 72 12 81 4.85e-17 77.8
Msa0578850 MtrunA17_Chr4g0018421 42.169 83 48 0 1 83 1 83 5.52e-17 78.6
Msa0578850 MtrunA17_Chr1g0159661 50.704 71 34 1 1 70 1 71 6.50e-17 77.8
Msa0578850 MtrunA17_Chr8g0355091 28.000 250 133 8 2 240 9 222 7.23e-17 79.0
Msa0578850 MtrunA17_Chr1g0204111 58.621 58 24 0 1 58 17 74 1.00e-16 79.0
Msa0578850 MtrunA17_Chr1g0208581 43.529 85 47 1 2 86 9 92 2.19e-16 77.4
Msa0578850 MtrunA17_Chr3g0099421 51.316 76 35 2 2 76 34 108 2.85e-16 77.4
Msa0578850 MtrunA17_Chr8g0357771 31.707 164 78 4 1 164 1 130 3.08e-16 75.9
Msa0578850 MtrunA17_Chr1g0206701 47.368 76 38 2 2 76 9 83 4.71e-16 76.6
Msa0578850 MtrunA17_Chr2g0292791 48.684 76 37 2 2 76 9 83 6.64e-16 76.3
Msa0578850 MtrunA17_Chr1g0208561 48.611 72 36 1 2 73 9 79 7.69e-16 75.9
Msa0578850 MtrunA17_Chr1g0166611 52.941 68 29 1 13 77 17 84 9.36e-16 73.2
Msa0578850 MtrunA17_Chr3g0089141 48.611 72 36 1 2 73 9 79 9.73e-16 75.5
Msa0578850 MtrunA17_Chr3g0099411 47.368 76 38 2 2 76 9 83 1.15e-15 75.1
Msa0578850 MtrunA17_Chr1g0206721 47.368 76 38 2 2 76 9 83 1.41e-15 75.1
Msa0578850 MtrunA17_Chr2g0333981 50.704 71 34 1 1 71 11 80 1.48e-15 73.9
Msa0578850 MtrunA17_Chr4g0018951 35.385 130 77 3 16 145 26 148 1.59e-15 73.6
Msa0578850 MtrunA17_Chr1g0175611 46.575 73 38 1 1 73 1 72 1.66e-15 73.6
Msa0578850 MtrunA17_Chr4g0049901 55.932 59 26 0 1 59 27 85 2.11e-15 74.7
Msa0578850 MtrunA17_Chr1g0188671 50.000 76 36 2 2 76 47 121 3.21e-15 74.7
Msa0578850 MtrunA17_Chr4g0074101 52.113 71 33 1 1 71 1 70 3.96e-15 73.2
Msa0578850 MtrunA17_Chr1g0206991 41.176 85 49 1 2 86 9 92 5.04e-15 72.4
Msa0578850 MtrunA17_Chr2g0325971 42.353 85 48 1 2 86 9 92 5.07e-15 73.6
Msa0578850 MtrunA17_Chr5g0422941 49.367 79 38 2 2 79 9 86 5.90e-15 73.6
Msa0578850 MtrunA17_Chr1g0187361 50.000 76 36 2 2 76 9 83 7.16e-15 73.2
Msa0578850 MtrunA17_Chr1g0149391 47.887 71 36 1 2 72 9 78 7.74e-15 73.2
Msa0578850 MtrunA17_Chr8g0376821 47.887 71 36 1 1 71 1 70 1.78e-14 70.9
Msa0578850 MtrunA17_Chr3g0089151 41.111 90 49 4 2 90 9 95 2.74e-14 68.9
Msa0578850 MtrunA17_Chr3g0119901 44.444 72 39 1 1 72 8 78 3.34e-14 70.9
Msa0578850 MtrunA17_Chr1g0180591 46.575 73 38 1 1 73 1 72 3.83e-14 69.7
Msa0578850 MtrunA17_Chr1g0169761 47.887 71 36 1 1 71 1 70 5.89e-14 69.3
Msa0578850 MtrunA17_Chr2g0300441 46.053 76 39 2 2 76 9 83 7.86e-14 70.1
Msa0578850 MtrunA17_Chr5g0422421 47.887 71 36 1 2 72 9 78 1.25e-13 69.7
Msa0578850 MtrunA17_Chr3g0085241 43.662 71 39 1 1 71 40 109 3.12e-13 68.6
Msa0578850 MtrunA17_Chr1g0175601 41.250 80 46 1 1 80 1 79 3.40e-13 67.4
Msa0578850 MtrunA17_Chr2g0300421 40.000 85 50 1 2 86 9 92 6.49e-13 66.2
Msa0578850 MtrunA17_Chr8g0356071 43.662 71 39 1 1 71 1 70 7.00e-13 65.9
Msa0578850 MtrunA17_Chr4g0071601 35.556 135 81 3 1 130 11 144 1.13e-12 65.9
Msa0578850 MtrunA17_Chr4g0052061 43.662 71 39 1 1 71 1 70 7.43e-12 62.8
Msa0578850 MtrunA17_Chr1g0206691 35.849 106 62 3 11 113 1 103 1.86e-11 63.2
Msa0578850 MtrunA17_Chr6g0457851 34.118 85 49 1 1 78 11 95 2.13e-11 64.3
Msa0578850 MtrunA17_Chr4g0052081 50.000 52 26 0 1 52 1 52 4.14e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578850 AT1G22130.1 53.870 323 132 7 1 315 1 314 5.56e-107 316
Msa0578850 AT1G77980.1 50.291 344 132 8 1 317 1 332 7.10e-101 301
Msa0578850 AT1G77950.3 60.622 193 74 1 1 191 1 193 2.08e-80 246
Msa0578850 AT1G77950.2 60.622 193 74 1 1 191 1 193 2.08e-80 246
Msa0578850 AT1G77950.1 60.622 193 74 1 1 191 1 193 2.08e-80 246
Msa0578850 AT1G77950.4 60.622 193 74 1 1 191 1 193 2.08e-80 246
Msa0578850 AT1G18750.4 32.937 252 139 8 1 237 1 237 7.43e-30 117
Msa0578850 AT1G18750.1 32.937 252 139 8 1 237 1 237 9.11e-30 117
Msa0578850 AT2G03060.3 36.216 185 103 4 1 184 1 171 1.98e-27 111
Msa0578850 AT2G03060.7 36.216 185 103 4 1 184 1 171 1.98e-27 111
Msa0578850 AT2G03060.1 36.216 185 103 4 1 184 1 171 1.98e-27 111
Msa0578850 AT2G03060.2 36.216 185 103 4 1 184 1 171 2.54e-27 110
Msa0578850 AT1G18750.3 47.414 116 48 3 1 115 1 104 5.64e-26 107
Msa0578850 AT4G37435.1 34.359 195 107 4 1 191 1 178 1.68e-25 101
Msa0578850 AT1G69540.2 31.466 232 132 6 1 218 1 219 1.91e-24 102
Msa0578850 AT1G69540.1 31.466 232 132 6 1 218 1 219 2.38e-24 102
Msa0578850 AT4G09960.2 34.043 188 83 3 1 187 1 148 6.27e-24 98.2
Msa0578850 AT4G09960.1 33.871 186 82 3 1 185 1 146 9.45e-24 98.2
Msa0578850 AT4G09960.6 33.871 186 82 3 1 185 2 147 1.02e-23 97.8
Msa0578850 AT4G09960.5 33.871 186 82 3 1 185 11 156 1.81e-23 97.4
Msa0578850 AT4G09960.3 33.871 186 82 3 1 185 27 172 4.54e-23 96.7
Msa0578850 AT4G09960.4 33.514 185 84 3 1 185 96 241 2.20e-22 96.3
Msa0578850 AT1G26310.1 32.804 189 91 3 1 189 1 153 3.13e-22 94.4
Msa0578850 AT1G24260.1 35.393 178 98 6 1 173 1 166 3.25e-22 94.4
Msa0578850 AT5G13790.2 35.417 192 75 4 1 189 1 146 4.55e-22 94.4
Msa0578850 AT2G45650.1 61.429 70 26 1 1 70 1 69 4.57e-22 94.0
Msa0578850 AT1G24260.2 35.196 179 98 6 1 173 1 167 4.81e-22 94.0
Msa0578850 AT5G15800.1 34.973 183 90 5 1 173 1 164 8.90e-22 93.2
Msa0578850 AT5G15800.2 34.973 183 90 5 1 173 1 164 1.10e-21 93.2
Msa0578850 AT4G18960.1 33.514 185 82 3 2 185 18 162 1.13e-21 92.8
Msa0578850 AT5G13790.1 34.921 189 77 3 1 189 1 143 1.81e-21 92.8
Msa0578850 AT1G24260.3 31.746 189 94 3 1 189 1 154 2.62e-21 91.7
Msa0578850 AT3G58780.5 31.892 185 87 3 1 185 22 167 2.68e-21 92.0
Msa0578850 AT4G11880.2 58.571 70 29 0 1 70 1 70 2.88e-21 90.1
Msa0578850 AT4G11880.3 58.571 70 29 0 1 70 1 70 2.88e-21 90.1
Msa0578850 AT3G58780.1 31.892 185 87 3 1 185 16 161 3.11e-21 91.7
Msa0578850 AT3G58780.3 32.432 185 111 3 1 185 16 186 3.40e-21 92.0
Msa0578850 AT3G58780.2 63.934 61 22 0 1 61 16 76 3.57e-21 91.3
Msa0578850 AT5G62165.17 32.632 190 87 4 1 189 1 150 4.00e-21 89.0
Msa0578850 AT5G62165.12 32.632 190 87 4 1 189 1 150 4.00e-21 89.0
Msa0578850 AT5G62165.11 32.632 190 87 4 1 189 1 150 4.00e-21 89.0
Msa0578850 AT5G62165.10 32.663 199 92 5 1 197 1 159 6.36e-21 89.4
Msa0578850 AT5G62165.4 32.663 199 92 5 1 197 1 159 6.36e-21 89.4
Msa0578850 AT4G11880.4 58.571 70 29 0 1 70 1 70 6.64e-21 90.1
Msa0578850 AT4G11880.1 58.571 70 29 0 1 70 1 70 6.64e-21 90.1
Msa0578850 AT1G69120.2 31.892 185 88 3 1 185 1 147 8.29e-21 90.1
Msa0578850 AT5G51870.2 32.979 188 88 4 1 188 1 150 1.10e-20 88.2
Msa0578850 AT1G69120.1 31.892 185 88 2 1 185 1 147 1.25e-20 90.1
Msa0578850 AT2G42830.1 65.517 58 20 0 1 58 16 73 1.27e-20 89.7
Msa0578850 AT3G02310.1 36.943 157 76 4 1 146 1 145 1.33e-20 89.7
Msa0578850 AT2G42830.2 65.517 58 20 0 1 58 16 73 1.46e-20 89.7
Msa0578850 AT2G03710.3 64.407 59 21 0 1 59 1 59 1.67e-20 88.2
Msa0578850 AT3G02310.2 55.714 70 31 0 1 70 1 70 1.70e-20 88.6
Msa0578850 AT3G61120.1 32.447 188 80 3 1 185 1 144 1.85e-20 89.4
Msa0578850 AT5G62165.6 32.105 190 88 4 1 189 1 150 2.05e-20 87.0
Msa0578850 AT5G62165.9 32.105 190 88 4 1 189 1 150 2.05e-20 87.0
Msa0578850 AT5G62165.7 32.105 190 88 4 1 189 1 150 2.05e-20 87.0
Msa0578850 AT5G62165.8 32.105 190 88 4 1 189 1 150 2.05e-20 87.0
Msa0578850 AT5G62165.13 32.105 190 88 4 1 189 1 150 2.05e-20 87.0
Msa0578850 AT4G22950.2 31.892 185 86 2 1 185 1 145 2.20e-20 87.4
Msa0578850 AT5G60910.1 54.286 70 32 0 1 70 1 70 2.51e-20 89.0
Msa0578850 AT5G62165.3 31.731 208 98 5 1 207 1 165 2.60e-20 88.2
Msa0578850 AT5G62165.1 31.731 208 98 5 1 207 1 165 2.60e-20 88.2
Msa0578850 AT5G62165.2 31.731 208 98 5 1 207 1 165 2.60e-20 88.2
Msa0578850 AT5G51870.1 32.804 189 89 4 1 189 1 151 2.65e-20 88.2
Msa0578850 AT3G30260.1 52.857 70 33 0 1 70 1 70 2.83e-20 89.0
Msa0578850 AT5G10140.2 58.571 70 29 0 1 70 1 70 2.87e-20 87.0
Msa0578850 AT2G45660.2 53.521 71 32 1 1 71 1 70 2.97e-20 86.7
Msa0578850 AT2G03710.1 60.870 69 23 1 1 65 1 69 3.09e-20 89.0
Msa0578850 AT5G10140.1 58.571 70 29 0 1 70 1 70 3.12e-20 87.4
Msa0578850 AT3G58780.4 65.517 58 20 0 1 58 16 73 3.17e-20 89.4
Msa0578850 AT5G10140.4 58.571 70 29 0 1 70 1 70 3.18e-20 87.0
Msa0578850 AT2G03710.2 60.870 69 23 1 1 65 1 69 3.29e-20 89.0
Msa0578850 AT4G22950.3 31.892 185 86 2 1 185 1 145 3.69e-20 87.8
Msa0578850 AT4G22950.1 31.892 185 86 2 1 185 1 145 3.69e-20 87.8
Msa0578850 AT5G51870.5 32.979 188 88 4 1 188 24 173 3.97e-20 87.4
Msa0578850 AT5G10140.3 58.571 70 29 0 1 70 1 70 5.17e-20 86.7
Msa0578850 AT3G57390.3 34.921 189 91 5 1 189 1 157 5.29e-20 87.8
Msa0578850 AT2G45660.1 53.521 71 32 1 1 71 1 70 5.50e-20 87.4
Msa0578850 AT3G57390.1 34.921 189 91 5 1 189 1 157 5.89e-20 88.2
Msa0578850 AT5G51870.3 32.804 189 89 4 1 189 11 161 7.51e-20 87.4
Msa0578850 AT5G51870.4 32.804 189 89 4 1 189 1 151 8.50e-20 87.0
Msa0578850 AT3G54340.1 44.545 110 54 2 1 109 1 104 9.44e-20 87.0
Msa0578850 AT3G57230.1 32.432 185 85 2 1 185 1 145 1.19e-19 87.0
Msa0578850 AT3G57230.4 32.432 185 85 2 1 185 1 145 1.19e-19 87.0
Msa0578850 AT3G57230.2 55.714 70 30 1 1 70 1 69 1.44e-19 84.3
Msa0578850 AT5G23260.3 32.143 196 88 5 1 192 1 155 2.55e-19 86.3
Msa0578850 AT5G65070.4 55.714 70 31 0 1 70 1 70 4.12e-19 83.2
Msa0578850 AT5G65070.1 55.714 70 31 0 1 70 1 70 4.33e-19 84.7
Msa0578850 AT5G23260.1 33.155 187 83 4 1 186 17 162 5.85e-19 85.5
Msa0578850 AT4G24540.1 55.714 70 30 1 1 70 1 69 7.56e-19 84.3
Msa0578850 AT5G23260.2 31.771 192 89 4 1 191 1 151 1.06e-18 84.7
Msa0578850 AT5G65070.5 55.714 70 31 0 1 70 1 70 1.35e-18 83.6
Msa0578850 AT5G65070.2 55.714 70 31 0 1 70 1 70 1.45e-18 84.0
Msa0578850 AT5G23260.4 31.771 192 89 4 1 191 17 167 1.72e-18 84.3
Msa0578850 AT5G65070.3 59.155 71 28 1 1 70 1 71 1.73e-18 83.6
Msa0578850 AT4G37940.1 33.333 189 86 4 1 189 1 149 1.90e-18 83.6
Msa0578850 AT1G71692.1 44.444 81 45 0 1 81 1 81 2.49e-18 82.8
Msa0578850 AT2G22540.3 29.767 215 109 5 1 215 1 173 1.48e-17 81.3
Msa0578850 AT2G22540.1 29.767 215 109 5 1 215 1 173 1.48e-17 81.3
Msa0578850 AT2G14210.1 44.156 77 43 0 1 77 1 77 1.61e-17 80.9
Msa0578850 AT1G31140.2 39.815 108 64 1 1 107 1 108 1.76e-17 80.5
Msa0578850 AT2G14210.2 44.156 77 43 0 1 77 1 77 2.22e-17 80.5
Msa0578850 AT5G65050.5 36.250 160 86 5 1 149 1 155 4.45e-17 78.6
Msa0578850 AT5G62165.14 55.714 70 30 1 1 70 1 69 4.89e-17 76.3
Msa0578850 AT5G51860.1 32.418 182 111 5 1 178 1 174 5.80e-17 79.0
Msa0578850 AT2G22630.1 31.217 189 90 3 1 189 1 149 5.84e-17 79.3
Msa0578850 AT2G22630.2 31.217 189 90 3 1 189 1 149 5.84e-17 79.3
Msa0578850 AT4G37940.3 51.429 70 33 1 1 70 1 69 7.66e-17 77.8
Msa0578850 AT1G31140.1 39.815 108 62 2 1 107 1 106 8.19e-17 78.6
Msa0578850 AT4G37940.4 32.432 185 85 4 1 185 1 145 8.26e-17 78.6
Msa0578850 AT5G65050.2 52.857 70 33 0 1 70 1 70 8.35e-17 77.8
Msa0578850 AT5G51860.2 33.333 174 104 5 1 170 1 166 1.16e-16 77.8
Msa0578850 AT5G20240.2 61.111 54 21 0 1 54 1 54 1.25e-16 76.3
Msa0578850 AT5G65050.3 52.857 70 33 0 1 70 1 70 1.92e-16 77.0
Msa0578850 AT5G65050.1 52.857 70 33 0 1 70 1 70 2.14e-16 76.6
Msa0578850 AT5G20240.1 61.111 54 21 0 1 54 1 54 2.70e-16 77.0
Msa0578850 AT2G22540.2 59.259 54 22 0 1 54 1 54 5.28e-16 76.6
Msa0578850 AT5G65060.1 51.429 70 34 0 1 70 1 70 2.94e-15 73.9
Msa0578850 AT5G65060.2 51.429 70 34 0 1 70 1 70 2.98e-15 73.6
Msa0578850 AT5G65060.3 51.429 70 34 0 1 70 1 70 4.42e-15 73.2
Msa0578850 AT5G65080.3 47.143 70 37 0 1 70 8 77 1.01e-14 72.0
Msa0578850 AT2G26320.1 43.750 80 44 1 1 79 17 96 3.90e-14 68.2
Msa0578850 AT5G65080.2 54.688 64 28 1 1 63 8 71 5.36e-14 70.5
Msa0578850 AT1G47760.1 53.846 52 24 0 1 52 1 52 1.94e-13 68.6
Msa0578850 AT5G60440.1 45.070 71 38 1 2 72 7 76 2.09e-13 70.1
Msa0578850 AT3G66656.1 41.667 72 41 1 1 72 1 71 4.56e-13 67.0
Msa0578850 AT1G01530.1 31.138 167 82 4 1 140 6 166 5.18e-13 68.6
Msa0578850 AT1G77080.11 54.286 70 32 0 1 70 1 70 8.05e-13 66.6
Msa0578850 AT2G24840.1 45.833 72 38 1 1 72 62 132 8.71e-13 68.2
Msa0578850 AT1G77080.5 54.286 70 32 0 1 70 1 70 9.70e-13 66.2
Msa0578850 AT1G77080.4 54.286 70 32 0 1 70 1 70 1.07e-12 66.6
Msa0578850 AT1G77080.12 75.000 40 10 0 1 40 1 40 1.67e-12 64.7
Msa0578850 AT1G77080.8 54.286 70 32 0 1 70 1 70 2.74e-12 65.9
Msa0578850 AT1G77080.2 75.000 40 10 0 1 40 1 40 3.05e-12 65.1
Msa0578850 AT4G36590.1 46.479 71 37 1 2 72 7 76 6.94e-12 65.1
Msa0578850 AT1G72350.1 54.386 57 26 0 2 58 43 99 7.53e-12 64.7
Msa0578850 AT2G34440.1 39.437 71 42 1 1 71 1 70 1.16e-11 63.2

Find 61 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATAGATGTCATCTTTAA+TGG 0.172713 4_1:+83524497 None:intergenic
GAACATACTTATCTCTTTCT+TGG 0.254516 4_1:+83525694 None:intergenic
GATTTGTCCTCTACTGTATA+TGG 0.307544 4_1:-83522767 Msa0578850:CDS
GCTTGAATGTTTCCATCGTT+TGG 0.313030 4_1:+83522674 None:intergenic
GTATGATCCATCAGCTATTC+AGG 0.315118 4_1:-83524255 Msa0578850:intron
AAATGGTAGAGGAGCAAATA+AGG 0.337725 4_1:-83524644 Msa0578850:intron
AAATGATTAAGACGATTTGA+TGG 0.363568 4_1:+83526292 None:intergenic
TACTTATCTCTTTCTTGGTC+AGG 0.364285 4_1:+83525699 None:intergenic
GTAATCTACTAACTTCTTGT+TGG 0.390980 4_1:+83524679 None:intergenic
CAACCTAATCACCAGCTTCA+TGG 0.392030 4_1:-83522464 Msa0578850:CDS
CTATAGATGTCATCTTTAAT+GGG 0.404310 4_1:+83524498 None:intergenic
GATGTCATCTTTAATGGGTC+GGG 0.420679 4_1:+83524503 None:intergenic
TCAACTTGTGAGGCAGTGAT+TGG 0.428516 4_1:+83522527 None:intergenic
GTCCATGTAGCATCATATCT+TGG 0.432097 4_1:+83522561 None:intergenic
TGACCATGAAGCTGGTGATT+AGG 0.440702 4_1:+83522461 None:intergenic
TTACGAACTTGGACATATGA+AGG 0.447873 4_1:+83524997 None:intergenic
ACATATTCAAAACGTAGAAA+TGG 0.460629 4_1:-83526382 Msa0578850:CDS
GTTGTTGATCCACGAGGTAT+AGG 0.473863 4_1:-83522716 Msa0578850:CDS
AGAAACCTTGGCACGTGTCA+TGG 0.475032 4_1:-83524444 Msa0578850:CDS
ATTACAACAACAACTTCAAA+TGG 0.479837 4_1:-83524661 Msa0578850:CDS
GGCACGTGTCATGGAGAGAA+AGG 0.482362 4_1:-83524435 Msa0578850:intron
TACCTTCGGTAGGGTAGCTC+AGG 0.489363 4_1:+83525553 None:intergenic
CATCTCCTATGGATCCTCTC+AGG 0.491750 4_1:-83522973 Msa0578850:intron
AGATGTCATCTTTAATGGGT+CGG 0.506566 4_1:+83524502 None:intergenic
TCTATAGCAGAGCTTGAAAC+CGG 0.508243 4_1:-83524482 Msa0578850:CDS
TTAATTACCTGAATAGCTGA+TGG 0.509027 4_1:+83524248 None:intergenic
CCTCTTTCGAGAATGTTAGT+TGG 0.510880 4_1:-83523039 Msa0578850:CDS
CATATTCAACATGACATTGT+GGG 0.521815 4_1:-83522611 Msa0578850:CDS
AACATTCAAGCGTGGCCTCA+AGG 0.529883 4_1:-83522662 Msa0578850:CDS
TCTCTCCATGACACGTGCCA+AGG 0.532693 4_1:+83524439 None:intergenic
TCAGGGTACTTCAGCAGTTG+AGG 0.541962 4_1:-83525037 Msa0578850:CDS
CCAACTAACATTCTCGAAAG+AGG 0.545727 4_1:+83523039 None:intergenic
TGAAACCTGAGAGGATCCAT+AGG 0.553014 4_1:+83522968 None:intergenic
AGACATGAACTCTGAGGTTG+AGG 0.553786 4_1:-83524842 Msa0578850:intron
CATCGTTTGGATTTGCCACG+TGG 0.555678 4_1:+83522687 None:intergenic
TTGCAGGGGTATTCAGAGCA+AGG 0.557352 4_1:-83525340 Msa0578850:intron
TACGAACTTGGACATATGAA+GGG 0.559614 4_1:+83524998 None:intergenic
TCTGAGAGTATACCTTCGGT+AGG 0.566583 4_1:+83525543 None:intergenic
ATCCAAGATATGATGCTACA+TGG 0.575427 4_1:-83522563 Msa0578850:CDS
TGTGTCATTGACCATGAAGC+TGG 0.589166 4_1:+83522453 None:intergenic
ACATATTCAACATGACATTG+TGG 0.591900 4_1:-83522612 Msa0578850:CDS
ACAACAACTTCAAATGGTAG+AGG 0.593286 4_1:-83524655 Msa0578850:CDS
TTTGGGAGGTTCAACTTGTG+AGG 0.593597 4_1:+83522517 None:intergenic
CATGAAGCTGGTGATTAGGT+TGG 0.602550 4_1:+83522465 None:intergenic
CTGAGAGTATACCTTCGGTA+GGG 0.605428 4_1:+83525544 None:intergenic
TTCCTGAGCTACCCTACCGA+AGG 0.607215 4_1:-83525555 Msa0578850:intron
TGAATATGTTGCTGATGTTG+AGG 0.630783 4_1:+83522626 None:intergenic
TGGCACTCTCCTATACCTCG+TGG 0.644590 4_1:+83522707 None:intergenic
CTAACATTCTCGAAAGAGGT+CGG 0.649958 4_1:+83523043 None:intergenic
AATGTTAGTTGGCTGCAAGA+TGG 0.658329 4_1:-83523028 Msa0578850:CDS
GGATATAATGTGTATCCTTG+AGG 0.659375 4_1:+83522647 None:intergenic
GTTAGTTGGCTGCAAGATGG+TGG 0.663132 4_1:-83523025 Msa0578850:CDS
GAGCAATATCAATATCACAA+AGG 0.664332 4_1:+83526329 None:intergenic
AAATGAACCATATACAGTAG+AGG 0.670428 4_1:+83522760 None:intergenic
TCAATAAATTGAAACCTGAG+AGG 0.671393 4_1:+83522959 None:intergenic
CACGTGGCAAATCCAAACGA+TGG 0.684598 4_1:-83522686 Msa0578850:CDS
ACGATGGAAACATTCAAGCG+TGG 0.690768 4_1:-83522670 Msa0578850:CDS
CAGGGGTATTCAGAGCAAGG+AGG 0.704327 4_1:-83525337 Msa0578850:intron
TTCGGGAGACATGAACTCTG+AGG 0.722763 4_1:-83524848 Msa0578850:CDS
TCAAATGTTGTTGATCCACG+AGG 0.725134 4_1:-83522722 Msa0578850:CDS
AGGTATAGGAGAGTGCCACG+TGG 0.767050 4_1:-83522702 Msa0578850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATAATTAAAATATTT+TGG + chr4_1:83524325-83524344 None:intergenic 0.0%
!! AAATTAATTCACTTTATAAT+TGG + chr4_1:83522996-83523015 None:intergenic 10.0%
!! TTATTTATTTATTTATTTGC+AGG - chr4_1:83523540-83523559 Msa0578850:intron 10.0%
!! TATTTATTTATTTATTTGCA+GGG - chr4_1:83523541-83523560 Msa0578850:intron 10.0%
!! ATTACTTTATATTAGAATTT+AGG - chr4_1:83523950-83523969 Msa0578850:intron 10.0%
!!! TTACATAATATAATTTTGAA+GGG + chr4_1:83524133-83524152 None:intergenic 10.0%
!!! TCTTCATTTTTTTTATTTTT+TGG - chr4_1:83524517-83524536 Msa0578850:intron 10.0%
!!! CTTCATTTTTTTTATTTTTT+GGG - chr4_1:83524518-83524537 Msa0578850:intron 10.0%
!!! TTCATTTTTTTTATTTTTTG+GGG - chr4_1:83524519-83524538 Msa0578850:intron 10.0%
!!! TTTGATAGTTTATTTATATA+TGG - chr4_1:83524548-83524567 Msa0578850:intron 10.0%
!!! TTGATAGTTTATTTATATAT+GGG - chr4_1:83524549-83524568 Msa0578850:intron 10.0%
!! AATCATTATTATATTATGTA+TGG + chr4_1:83525463-83525482 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGTAGTAT+TGG - chr4_1:83525757-83525776 Msa0578850:intron 10.0%
!! AAATTATATATGAATCATTA+GGG + chr4_1:83525975-83525994 None:intergenic 10.0%
!! AAAATTATATATGAATCATT+AGG + chr4_1:83525976-83525995 None:intergenic 10.0%
!! TTTACAAACTATATATGTAT+TGG - chr4_1:83522682-83522701 Msa0578850:CDS 15.0%
!! AATAAAGTTATTATACACTA+TGG + chr4_1:83523081-83523100 None:intergenic 15.0%
!! ATTTATTTATTTATTTGCAG+GGG - chr4_1:83523542-83523561 Msa0578850:intron 15.0%
!! AAAGTTATTATACACATTAT+TGG - chr4_1:83523687-83523706 Msa0578850:intron 15.0%
!!! GTTACATAATATAATTTTGA+AGG + chr4_1:83524134-83524153 None:intergenic 15.0%
!! TATATTACGAATTAGAATTT+CGG - chr4_1:83524840-83524859 Msa0578850:intron 15.0%
!! CTTTATAAATGCTATTAATT+CGG + chr4_1:83525418-83525437 None:intergenic 15.0%
!! ATGTTATGTAATTAAATGTT+TGG - chr4_1:83525669-83525688 Msa0578850:intron 15.0%
!! ATAATATTTGATCTATGTAT+AGG - chr4_1:83526106-83526125 Msa0578850:intron 15.0%
!! TAATATTTGATCTATGTATA+GGG - chr4_1:83526107-83526126 Msa0578850:intron 15.0%
!! AAAATCTATCAAAAACAATC+AGG + chr4_1:83522755-83522774 None:intergenic 20.0%
!!! CATTTATGTTTTAGATACAA+TGG - chr4_1:83522828-83522847 Msa0578850:intron 20.0%
!!! TATTCTTTTCTTTTCTTCTA+TGG - chr4_1:83522909-83522928 Msa0578850:intron 20.0%
!! TTGAATAAAACCTATAGATT+AGG - chr4_1:83522963-83522982 Msa0578850:intron 20.0%
!! AAATATAACAACATCACTAT+GGG + chr4_1:83523130-83523149 None:intergenic 20.0%
!! AAAATATAACAACATCACTA+TGG + chr4_1:83523131-83523150 None:intergenic 20.0%
!! AAACAATTAAGAAATGAAGA+AGG + chr4_1:83523419-83523438 None:intergenic 20.0%
!! ATGTGACAAAGATTAATTAA+AGG + chr4_1:83523628-83523647 None:intergenic 20.0%
!! GTATAATAACTTTATACTGA+CGG + chr4_1:83523680-83523699 None:intergenic 20.0%
!! TCAAAAATTGTTCTAATGTT+TGG - chr4_1:83524345-83524364 Msa0578850:intron 20.0%
!! CAAAAATTGTTCTAATGTTT+GGG - chr4_1:83524346-83524365 Msa0578850:intron 20.0%
!! AAAAATTGTTCTAATGTTTG+GGG - chr4_1:83524347-83524366 Msa0578850:intron 20.0%
!! ACTTTCAGTTTGTAAAAAAT+TGG - chr4_1:83524786-83524805 Msa0578850:intron 20.0%
!! CTTTCAGTTTGTAAAAAATT+GGG - chr4_1:83524787-83524806 Msa0578850:intron 20.0%
!! ATATTACGAATTAGAATTTC+GGG - chr4_1:83524841-83524860 Msa0578850:intron 20.0%
!! AGAGAAATTTGAGAAATTAA+AGG - chr4_1:83524933-83524952 Msa0578850:intron 20.0%
!! TAGGAAAAATGTAGAAATTA+TGG - chr4_1:83525077-83525096 Msa0578850:intron 20.0%
!! TTATTACAAAGAGATACAAA+AGG + chr4_1:83525139-83525158 None:intergenic 20.0%
!! TTGTAATAATTCATTGATAG+TGG - chr4_1:83525150-83525169 Msa0578850:intron 20.0%
!! TTTATTCCTAGATTAAATCT+AGG - chr4_1:83525294-83525313 Msa0578850:intron 20.0%
!!! TATTCTGTTGAATCATTTTT+GGG + chr4_1:83526399-83526418 None:intergenic 20.0%
!!! ATATTCTGTTGAATCATTTT+TGG + chr4_1:83526400-83526419 None:intergenic 20.0%
! ACATATTCAAAACGTAGAAA+TGG - chr4_1:83522514-83522533 Msa0578850:CDS 25.0%
! AAATGATTAAGACGATTTGA+TGG + chr4_1:83522607-83522626 None:intergenic 25.0%
!!! AATCGTCTTAATCATTTTTC+AGG - chr4_1:83522610-83522629 Msa0578850:CDS 25.0%
!!! ATCATTTTTCAGGTAAAAGA+AGG - chr4_1:83522620-83522639 Msa0578850:CDS 25.0%
! GAAGAAGAAAAATATGAAGA+GGG + chr4_1:83522657-83522676 None:intergenic 25.0%
! AGAAGAAGAAAAATATGAAG+AGG + chr4_1:83522658-83522677 None:intergenic 25.0%
!! TTTCTTTTCTTCTATGGATT+AGG - chr4_1:83522915-83522934 Msa0578850:intron 25.0%
!!! GTTATATTTTTGTTGTAAGC+AGG - chr4_1:83523141-83523160 Msa0578850:intron 25.0%
! TGAAAACTTCTAAACACATT+AGG - chr4_1:83523264-83523283 Msa0578850:intron 25.0%
! AATTAGTAACAAAAGAGCAA+AGG + chr4_1:83523506-83523525 None:intergenic 25.0%
! TTTCTCTAACATTTACTGAT+AGG - chr4_1:83523585-83523604 Msa0578850:intron 25.0%
! ATTTCACATATTTACGAACT+TGG + chr4_1:83523913-83523932 None:intergenic 25.0%
! TAGATGAAACAATATAGGAA+AGG + chr4_1:83524014-83524033 None:intergenic 25.0%
! CTAGTTAAGAAGAGAATTTA+AGG + chr4_1:83524192-83524211 None:intergenic 25.0%
! CTTAAATTCTCTTCTTAACT+AGG - chr4_1:83524190-83524209 Msa0578850:intron 25.0%
! ATTACAACAACAACTTCAAA+TGG - chr4_1:83524235-83524254 Msa0578850:intron 25.0%
! CTATAGATGTCATCTTTAAT+GGG + chr4_1:83524401-83524420 None:intergenic 25.0%
! AAAACATGCATGTTTATTCA+TGG - chr4_1:83524583-83524602 Msa0578850:intron 25.0%
! TATTACGAATTAGAATTTCG+GGG - chr4_1:83524842-83524861 Msa0578850:intron 25.0%
! GAAATTTGAGAAATTAAAGG+AGG - chr4_1:83524936-83524955 Msa0578850:intron 25.0%
! AACAAACCTAGATTTAATCT+AGG + chr4_1:83525303-83525322 None:intergenic 25.0%
! AAAAGTAGTAACTAATGTCA+AGG + chr4_1:83525352-83525371 None:intergenic 25.0%
!!! CTTCTAAATACGTGTTTTTA+AGG - chr4_1:83525620-83525639 Msa0578850:intron 25.0%
!!! TTTTTGTAGTATTGGTATAG+TGG - chr4_1:83525765-83525784 Msa0578850:intron 25.0%
! AAAATCACAAAATTCATGAC+AGG - chr4_1:83525825-83525844 Msa0578850:intron 25.0%
! AAATCACAAAATTCATGACA+GGG - chr4_1:83525826-83525845 Msa0578850:intron 25.0%
! AGATGATGCATCAAAAATTT+GGG + chr4_1:83525908-83525927 None:intergenic 25.0%
! AAAGATCAAGTAGTAAATGA+GGG + chr4_1:83526074-83526093 None:intergenic 25.0%
! TAAAGATCAAGTAGTAAATG+AGG + chr4_1:83526075-83526094 None:intergenic 25.0%
!! TATATGGTTCATTTTCACAA+GGG - chr4_1:83526145-83526164 Msa0578850:intron 25.0%
GAGCAATATCAATATCACAA+AGG + chr4_1:83522570-83522589 None:intergenic 30.0%
!! GTTTTAGATACAATGGTTTG+TGG - chr4_1:83522835-83522854 Msa0578850:intron 30.0%
!! ATTTGACTTGAAATCATTGC+TGG - chr4_1:83523012-83523031 Msa0578850:CDS 30.0%
GAACATACTTATCTCTTTCT+TGG + chr4_1:83523205-83523224 None:intergenic 30.0%
AGCAGTAGATGAAACAATAT+AGG + chr4_1:83524019-83524038 None:intergenic 30.0%
GTAATCTACTAACTTCTTGT+TGG + chr4_1:83524220-83524239 None:intergenic 30.0%
GCTATAGATGTCATCTTTAA+TGG + chr4_1:83524402-83524421 None:intergenic 30.0%
!!! TTCTACTACGTTTTTTTCAC+CGG + chr4_1:83524436-83524455 None:intergenic 30.0%
AAAAAACGTAGTAGAAACCT+TGG - chr4_1:83524440-83524459 Msa0578850:CDS 30.0%
TTAATTACCTGAATAGCTGA+TGG + chr4_1:83524651-83524670 None:intergenic 30.0%
TGTCACTCAAAATTGAGATT+TGG - chr4_1:83524692-83524711 Msa0578850:intron 30.0%
GAACCTTATATGTCAAAATC+GGG + chr4_1:83524814-83524833 None:intergenic 30.0%
CGAACCTTATATGTCAAAAT+CGG + chr4_1:83524815-83524834 None:intergenic 30.0%
AAATTAAAGGAGGTAGCTTT+AGG - chr4_1:83524946-83524965 Msa0578850:intron 30.0%
! AATTAAAGGAGGTAGCTTTA+GGG - chr4_1:83524947-83524966 Msa0578850:intron 30.0%
!!! GAAACATTTTGAAACACCTT+GGG - chr4_1:83525016-83525035 Msa0578850:CDS 30.0%
! GTACAAGAAATTAGCTTAGA+AGG + chr4_1:83525117-83525136 None:intergenic 30.0%
CAAGAAATGTTTATCCAGTT+CGG + chr4_1:83525219-83525238 None:intergenic 30.0%
!! CTCTCTTTATCTTTTGTTTG+TGG - chr4_1:83525256-83525275 Msa0578850:intron 30.0%
AATAAAACTATGATGTGTGG+AGG + chr4_1:83525379-83525398 None:intergenic 30.0%
!!! TCCACACATCATAGTTTTAT+TGG - chr4_1:83525378-83525397 Msa0578850:intron 30.0%
ACCAATAAAACTATGATGTG+TGG + chr4_1:83525382-83525401 None:intergenic 30.0%
AATCACAAAATTCATGACAG+GGG - chr4_1:83525827-83525846 Msa0578850:intron 30.0%
GATGATGCATCAAAAATTTG+GGG + chr4_1:83525907-83525926 None:intergenic 30.0%
GAGATGATGCATCAAAAATT+TGG + chr4_1:83525909-83525928 None:intergenic 30.0%
TCAATAAATTGAAACCTGAG+AGG + chr4_1:83525940-83525959 None:intergenic 30.0%
AAATGAACCATATACAGTAG+AGG + chr4_1:83526139-83526158 None:intergenic 30.0%
! GTATATGGTTCATTTTCACA+AGG - chr4_1:83526144-83526163 Msa0578850:intron 30.0%
ACATATTCAACATGACATTG+TGG - chr4_1:83526284-83526303 Msa0578850:CDS 30.0%
CATATTCAACATGACATTGT+GGG - chr4_1:83526285-83526304 Msa0578850:CDS 30.0%
TGGTCAAGATCCTAATCTAT+AGG + chr4_1:83522976-83522995 None:intergenic 35.0%
! GCTTTTGCAGTAAATTGTGA+AGG + chr4_1:83523038-83523057 None:intergenic 35.0%
CATCACTATGGGCATTATAT+TGG + chr4_1:83523119-83523138 None:intergenic 35.0%
!! TTTTGTTGTAAGCAGGATAG+AGG - chr4_1:83523148-83523167 Msa0578850:intron 35.0%
TACTTATCTCTTTCTTGGTC+AGG + chr4_1:83523200-83523219 None:intergenic 35.0%
! GATTTCTGAGAGTATACCTT+CGG + chr4_1:83523360-83523379 None:intergenic 35.0%
TGAAGAAGGAACAGAAGAAT+GGG + chr4_1:83523405-83523424 None:intergenic 35.0%
ATGAAGAAGGAACAGAAGAA+TGG + chr4_1:83523406-83523425 None:intergenic 35.0%
! CATTTTGCAGTATTTGCTCA+GGG - chr4_1:83523842-83523861 Msa0578850:intron 35.0%
TACGAACTTGGACATATGAA+GGG + chr4_1:83523901-83523920 None:intergenic 35.0%
TTACGAACTTGGACATATGA+AGG + chr4_1:83523902-83523921 None:intergenic 35.0%
TCTACTGCTTCAATCAAGTT+CGG - chr4_1:83524030-83524049 Msa0578850:intron 35.0%
ACAACAACTTCAAATGGTAG+AGG - chr4_1:83524241-83524260 Msa0578850:intron 35.0%
AAATGGTAGAGGAGCAAATA+AGG - chr4_1:83524252-83524271 Msa0578850:intron 35.0%
AATTGTTCTAATGTTTGGGG+TGG - chr4_1:83524350-83524369 Msa0578850:intron 35.0%
! AGATGTCATCTTTAATGGGT+CGG + chr4_1:83524397-83524416 None:intergenic 35.0%
! AAGTCTGAAACACCAAAACT+GGG + chr4_1:83524770-83524789 None:intergenic 35.0%
! AAAGTCTGAAACACCAAAAC+TGG + chr4_1:83524771-83524790 None:intergenic 35.0%
!!! CGAGTTTTGAGCACTATAAA+AGG - chr4_1:83524875-83524894 Msa0578850:intron 35.0%
!! TTCGTTCTTCATGTTTTGAG+AGG - chr4_1:83524899-83524918 Msa0578850:intron 35.0%
!!! TCGTTCTTCATGTTTTGAGA+GGG - chr4_1:83524900-83524919 Msa0578850:intron 35.0%
TCTTTGATTAGGGTTTCTTG+AGG - chr4_1:83524977-83524996 Msa0578850:intron 35.0%
CTTTGATTAGGGTTTCTTGA+GGG - chr4_1:83524978-83524997 Msa0578850:intron 35.0%
TTTGATTAGGGTTTCTTGAG+GGG - chr4_1:83524979-83524998 Msa0578850:intron 35.0%
!!! GGAAACATTTTGAAACACCT+TGG - chr4_1:83525015-83525034 Msa0578850:CDS 35.0%
! TCATTGAGTGTCTTGTTCAT+TGG - chr4_1:83525049-83525068 Msa0578850:intron 35.0%
ATCAATCTCTCCCTTAAAGT+TGG - chr4_1:83525182-83525201 Msa0578850:intron 35.0%
CCAACTTAGACCAACTTTAA+GGG + chr4_1:83525195-83525214 None:intergenic 35.0%
TCCAACTTAGACCAACTTTA+AGG + chr4_1:83525196-83525215 None:intergenic 35.0%
CGAACTGGATAAACATTTCT+TGG - chr4_1:83525217-83525236 Msa0578850:intron 35.0%
! ATGCATCAAAAATTTGGGGT+TGG + chr4_1:83525903-83525922 None:intergenic 35.0%
! TTTTGATGCATCATCTCCTA+TGG - chr4_1:83525912-83525931 Msa0578850:intron 35.0%
GATTTGTCCTCTACTGTATA+TGG - chr4_1:83526129-83526148 Msa0578850:intron 35.0%
GGATATAATGTGTATCCTTG+AGG + chr4_1:83526252-83526271 None:intergenic 35.0%
TGAATATGTTGCTGATGTTG+AGG + chr4_1:83526273-83526292 None:intergenic 35.0%
ATCCAAGATATGATGCTACA+TGG - chr4_1:83526333-83526352 Msa0578850:CDS 35.0%
!! TCTGTTGAATCATTTTTGGG+AGG + chr4_1:83526396-83526415 None:intergenic 35.0%
TCAAAAACAATCAGGCCTTG+AGG + chr4_1:83522747-83522766 None:intergenic 40.0%
TCTCAGAAATCCTCTTCTCT+CGG - chr4_1:83523369-83523388 Msa0578850:intron 40.0%
! GCATTTTGCAGTATTTGCTC+AGG - chr4_1:83523841-83523860 Msa0578850:intron 40.0%
CTACTGCTTCAATCAAGTTC+GGG - chr4_1:83524031-83524050 Msa0578850:intron 40.0%
! GATGTCATCTTTAATGGGTC+GGG + chr4_1:83524396-83524415 None:intergenic 40.0%
TCTATAGCAGAGCTTGAAAC+CGG - chr4_1:83524414-83524433 Msa0578850:intron 40.0%
GCATGTTTATTCATGGTTGC+AGG - chr4_1:83524590-83524609 Msa0578850:intron 40.0%
GTATGATCCATCAGCTATTC+AGG - chr4_1:83524641-83524660 Msa0578850:intron 40.0%
TTGGATTGCAGCCAAAATTG+CGG - chr4_1:83524711-83524730 Msa0578850:intron 40.0%
!! CGGTCCGATTTGGTAAAATT+GGG - chr4_1:83524731-83524750 Msa0578850:intron 40.0%
!! GGTCCGATTTGGTAAAATTG+GGG - chr4_1:83524732-83524751 Msa0578850:intron 40.0%
! GGACCCCAATTTTACCAAAT+CGG + chr4_1:83524738-83524757 None:intergenic 40.0%
TAAAATTGGGGTCCGATTCT+TGG - chr4_1:83524744-83524763 Msa0578850:intron 40.0%
!! GGACCCGATTTTGACATATA+AGG - chr4_1:83524808-83524827 Msa0578850:intron 40.0%
!!! CGTTCTTCATGTTTTGAGAG+GGG - chr4_1:83524901-83524920 Msa0578850:intron 40.0%
AGGGTTGAGGATCTTTGATT+AGG - chr4_1:83524966-83524985 Msa0578850:intron 40.0%
GGGTTGAGGATCTTTGATTA+GGG - chr4_1:83524967-83524986 Msa0578850:intron 40.0%
! CAATGATTTTCACTCACCCA+AGG + chr4_1:83525035-83525054 None:intergenic 40.0%
! TTGAGTGTCTTGTTCATTGG+TGG - chr4_1:83525052-83525071 Msa0578850:intron 40.0%
!! GTCTTGTTCATTGGTGGATT+AGG - chr4_1:83525058-83525077 Msa0578850:intron 40.0%
! CCCTTAAAGTTGGTCTAAGT+TGG - chr4_1:83525192-83525211 Msa0578850:intron 40.0%
! ATTGTTGTTGTTGCTGCTTC+TGG - chr4_1:83525323-83525342 Msa0578850:intron 40.0%
CTAACATTCTCGAAAGAGGT+CGG + chr4_1:83525856-83525875 None:intergenic 40.0%
CCAACTAACATTCTCGAAAG+AGG + chr4_1:83525860-83525879 None:intergenic 40.0%
CCTCTTTCGAGAATGTTAGT+TGG - chr4_1:83525857-83525876 Msa0578850:intron 40.0%
AATGTTAGTTGGCTGCAAGA+TGG - chr4_1:83525868-83525887 Msa0578850:intron 40.0%
TCAAATGTTGTTGATCCACG+AGG - chr4_1:83526174-83526193 Msa0578850:intron 40.0%
GCTTGAATGTTTCCATCGTT+TGG + chr4_1:83526225-83526244 None:intergenic 40.0%
GTCCATGTAGCATCATATCT+TGG + chr4_1:83526338-83526357 None:intergenic 40.0%
TTATGCCTCTTCTCTCCTCA+AGG - chr4_1:83522729-83522748 Msa0578850:CDS 45.0%
! TACAATGGTTTGTGGCTCGT+TGG - chr4_1:83522843-83522862 Msa0578850:intron 45.0%
! ACAATGGTTTGTGGCTCGTT+GGG - chr4_1:83522844-83522863 Msa0578850:intron 45.0%
! CTGAGAGTATACCTTCGGTA+GGG + chr4_1:83523355-83523374 None:intergenic 45.0%
! TCTGAGAGTATACCTTCGGT+AGG + chr4_1:83523356-83523375 None:intergenic 45.0%
ACAGAAGAATGGGTGAGAGA+AGG + chr4_1:83523395-83523414 None:intergenic 45.0%
!! AGACATGAACTCTGAGGTTG+AGG - chr4_1:83524054-83524073 Msa0578850:intron 45.0%
! TGTTTGGGGTGGATAAACAC+AGG - chr4_1:83524361-83524380 Msa0578850:intron 45.0%
! ACCAAATCGGACCGCAATTT+TGG + chr4_1:83524725-83524744 None:intergenic 45.0%
!! GCGGTCCGATTTGGTAAAAT+TGG - chr4_1:83524730-83524749 Msa0578850:intron 45.0%
ACCAAAACTGGGCCAAGAAT+CGG + chr4_1:83524759-83524778 None:intergenic 45.0%
GTTTCTTGAGGGGTTCTCTT+GGG - chr4_1:83524989-83525008 Msa0578850:intron 45.0%
TGAAACCTGAGAGGATCCAT+AGG + chr4_1:83525931-83525950 None:intergenic 45.0%
GTTGTTGATCCACGAGGTAT+AGG - chr4_1:83526180-83526199 Msa0578850:intron 45.0%
ACGATGGAAACATTCAAGCG+TGG - chr4_1:83526226-83526245 Msa0578850:intron 45.0%
TCAACTTGTGAGGCAGTGAT+TGG + chr4_1:83526372-83526391 None:intergenic 45.0%
TTTGGGAGGTTCAACTTGTG+AGG + chr4_1:83526382-83526401 None:intergenic 45.0%
CATGAAGCTGGTGATTAGGT+TGG + chr4_1:83526434-83526453 None:intergenic 45.0%
CAACCTAATCACCAGCTTCA+TGG - chr4_1:83526432-83526451 Msa0578850:CDS 45.0%
TGACCATGAAGCTGGTGATT+AGG + chr4_1:83526438-83526457 None:intergenic 45.0%
!! TTGCAGGGGTATTCAGAGCA+AGG - chr4_1:83523556-83523575 Msa0578850:intron 50.0%
! TCAGGGTACTTCAGCAGTTG+AGG - chr4_1:83523859-83523878 Msa0578850:intron 50.0%
TTCGGGAGACATGAACTCTG+AGG - chr4_1:83524048-83524067 Msa0578850:intron 50.0%
AGAAACCTTGGCACGTGTCA+TGG - chr4_1:83524452-83524471 Msa0578850:CDS 50.0%
GCCAAAATTGCGGTCCGATT+TGG - chr4_1:83524721-83524740 Msa0578850:intron 50.0%
! TCCGATTCTTGGCCCAGTTT+TGG - chr4_1:83524755-83524774 Msa0578850:intron 50.0%
!! AGGAGGTAGCTTTAGGGTTG+AGG - chr4_1:83524953-83524972 Msa0578850:intron 50.0%
GGTTTCTTGAGGGGTTCTCT+TGG - chr4_1:83524988-83525007 Msa0578850:intron 50.0%
TTGAGGGGTTCTCTTGGGTT+GGG - chr4_1:83524994-83525013 Msa0578850:intron 50.0%
! TGGTCTAAGTTGGACCGAAC+TGG - chr4_1:83525202-83525221 Msa0578850:intron 50.0%
GTTAGTTGGCTGCAAGATGG+TGG - chr4_1:83525871-83525890 Msa0578850:intron 50.0%
CATCTCCTATGGATCCTCTC+AGG - chr4_1:83525923-83525942 Msa0578850:intron 50.0%
CATCGTTTGGATTTGCCACG+TGG + chr4_1:83526212-83526231 None:intergenic 50.0%
CACGTGGCAAATCCAAACGA+TGG - chr4_1:83526210-83526229 Msa0578850:intron 50.0%
AACATTCAAGCGTGGCCTCA+AGG - chr4_1:83526234-83526253 Msa0578850:intron 50.0%
TCAGGCCTTGAGGAGAGAAG+AGG + chr4_1:83522737-83522756 None:intergenic 55.0%
TTCCTGAGCTACCCTACCGA+AGG - chr4_1:83523341-83523360 Msa0578850:intron 55.0%
TACCTTCGGTAGGGTAGCTC+AGG + chr4_1:83523346-83523365 None:intergenic 55.0%
TGAGAGAAGGCCGAGAGAAG+AGG + chr4_1:83523382-83523401 None:intergenic 55.0%
!! CAGGGGTATTCAGAGCAAGG+AGG - chr4_1:83523559-83523578 Msa0578850:intron 55.0%
TCTCTCCATGACACGTGCCA+AGG + chr4_1:83524460-83524479 None:intergenic 55.0%
GGCACGTGTCATGGAGAGAA+AGG - chr4_1:83524461-83524480 Msa0578850:CDS 55.0%
CTTGAGGGGTTCTCTTGGGT+TGG - chr4_1:83524993-83525012 Msa0578850:intron 55.0%
TGGCACTCTCCTATACCTCG+TGG + chr4_1:83526192-83526211 None:intergenic 55.0%
!! AGGTATAGGAGAGTGCCACG+TGG - chr4_1:83526194-83526213 Msa0578850:intron 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 83522457 83526461 83522457 ID=Msa0578850;Name=Msa0578850
chr4_1 mRNA 83522457 83526461 83522457 ID=Msa0578850-mRNA-1;Parent=Msa0578850;Name=Msa0578850-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0|0|0.90|1|1|11|0|341
chr4_1 exon 83526277 83526461 83526277 ID=Msa0578850-mRNA-1:exon:30481;Parent=Msa0578850-mRNA-1
chr4_1 exon 83525702 83525755 83525702 ID=Msa0578850-mRNA-1:exon:30480;Parent=Msa0578850-mRNA-1
chr4_1 exon 83525556 83525588 83525556 ID=Msa0578850-mRNA-1:exon:30479;Parent=Msa0578850-mRNA-1
chr4_1 exon 83525338 83525356 83525338 ID=Msa0578850-mRNA-1:exon:30478;Parent=Msa0578850-mRNA-1
chr4_1 exon 83525005 83525066 83525005 ID=Msa0578850-mRNA-1:exon:30477;Parent=Msa0578850-mRNA-1
chr4_1 exon 83524843 83524870 83524843 ID=Msa0578850-mRNA-1:exon:30476;Parent=Msa0578850-mRNA-1
chr4_1 exon 83524645 83524706 83524645 ID=Msa0578850-mRNA-1:exon:30475;Parent=Msa0578850-mRNA-1
chr4_1 exon 83524436 83524535 83524436 ID=Msa0578850-mRNA-1:exon:30474;Parent=Msa0578850-mRNA-1
chr4_1 exon 83524256 83524306 83524256 ID=Msa0578850-mRNA-1:exon:30473;Parent=Msa0578850-mRNA-1
chr4_1 exon 83522974 83523071 83522974 ID=Msa0578850-mRNA-1:exon:30472;Parent=Msa0578850-mRNA-1
chr4_1 exon 83522457 83522790 83522457 ID=Msa0578850-mRNA-1:exon:30471;Parent=Msa0578850-mRNA-1
chr4_1 CDS 83526277 83526461 83526277 ID=Msa0578850-mRNA-1:cds;Parent=Msa0578850-mRNA-1
chr4_1 CDS 83525702 83525755 83525702 ID=Msa0578850-mRNA-1:cds;Parent=Msa0578850-mRNA-1
chr4_1 CDS 83525556 83525588 83525556 ID=Msa0578850-mRNA-1:cds;Parent=Msa0578850-mRNA-1
chr4_1 CDS 83525338 83525356 83525338 ID=Msa0578850-mRNA-1:cds;Parent=Msa0578850-mRNA-1
chr4_1 CDS 83525005 83525066 83525005 ID=Msa0578850-mRNA-1:cds;Parent=Msa0578850-mRNA-1
chr4_1 CDS 83524843 83524870 83524843 ID=Msa0578850-mRNA-1:cds;Parent=Msa0578850-mRNA-1
chr4_1 CDS 83524645 83524706 83524645 ID=Msa0578850-mRNA-1:cds;Parent=Msa0578850-mRNA-1
chr4_1 CDS 83524436 83524535 83524436 ID=Msa0578850-mRNA-1:cds;Parent=Msa0578850-mRNA-1
chr4_1 CDS 83524256 83524306 83524256 ID=Msa0578850-mRNA-1:cds;Parent=Msa0578850-mRNA-1
chr4_1 CDS 83522974 83523071 83522974 ID=Msa0578850-mRNA-1:cds;Parent=Msa0578850-mRNA-1
chr4_1 CDS 83522457 83522790 83522457 ID=Msa0578850-mRNA-1:cds;Parent=Msa0578850-mRNA-1
Gene Sequence

>Msa0578850

ATGGGTCGTGTTAAACTTGAGATAAAAAGAATAGAGAACACAGTGAATCGACAAGTTACATATTCAAAACGTAGAAATGGTCTCATTAAGAAAGCTTATGAGTTATCAATCCTTTGTGATATTGATATTGCTCTTATAATGTTTTCTCCATCAAATCGTCTTAATCATTTTTCAGGTAAAAGAAGGATAGAGGATGTTTTAACTCGTTACATTAATATTCCTGACCAAGAAAGAGATAATGCTGTAAGTTTTCCTGAGCTACCCTACCGAAGGGGTATTCAGAGCAAGGAGTATTTGCTCAGGGTACTTCAGCAGTTGAGGAATGAAAATGACATAGCCCTTCATATGTCCAATTCGGGAGACATGAACTCTGAGGTTGAGGATCTCCAACAAGAAGTTAGTAGATTACAACAACAACTTCAAATGGTAGAGGAGCAAATAAGGAAATATGAACCCGACCCATTAAAGATGACATCTATAGCAGAGCTTGAAACCGGTGAAAAAAACGTAGTAGAAACCTTGGCACGTGTCATGGAGAGAAAGGAACAGTTGTTGAACAACAATCTATCTTCGTATGATCCATCAGCTATTCAGGGGATGCCGACCTCTTTCGAGAATGTTAGTTGGCTGCAAGATGGTGGTCAGAACCAACCCCAAATTTTTGATGCATCATCTCCTATGGATCCTCTCAGGGATTTGTCCTCTACTGTATATGGTTCATTTTCACAAGGGACGAGTTCAAATGTTGTTGATCCACGAGGTATAGGAGAGTGCCACGTGGCAAATCCAAACGATGGAAACATTCAAGCGTGGCCTCAAGGATACACATTATATCCTCAACATCAGCAACATATTCAACATGACATTGTGGGAACTGATCATCATCATCATCACAACATCCAAGATATGATGCTACATGGACAAATGAACATGCCAATCACTGCCTCACAAGTTGAACCTCCCAAAAATGATTCAACAGAATATGATCAATGTAACCAACCTAATCACCAGCTTCATGGTCAATGA
Protein sequence

>Msa0578850

MGRVKLEIKRIENTVNRQVTYSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLNHFSGKRRIEDVLTRYINIPDQERDNAVSFPELPYRRGIQSKEYLLRVLQQLRNENDIALHMSNSGDMNSEVEDLQQEVSRLQQQLQMVEEQIRKYEPDPLKMTSIAELETGEKNVVETLARVMERKEQLLNNNLSSYDPSAIQGMPTSFENVSWLQDGGQNQPQIFDASSPMDPLRDLSSTVYGSFSQGTSSNVVDPRGIGECHVANPNDGNIQAWPQGYTLYPQHQQHIQHDIVGTDHHHHHNIQDMMLHGQMNMPITASQVEPPKNDSTEYDQCNQPNHQLHGQ*