Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580050 | XP_003607861.1 | 96.774 | 62 | 2 | 0 | 1 | 62 | 1 | 62 | 4.73e-37 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580050 | sp|Q9SHE9|LBD4_ARATH | 85.484 | 62 | 7 | 1 | 1 | 62 | 1 | 60 | 1.52e-32 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580050 | G7JIR8 | 96.774 | 62 | 2 | 0 | 1 | 62 | 1 | 62 | 2.26e-37 | 134 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0580050 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580050 | MtrunA17_Chr4g0043421 | 96.774 | 62 | 2 | 0 | 1 | 62 | 1 | 62 | 4.35e-41 | 134 |
| Msa0580050 | MtrunA17_Chr2g0311601 | 83.871 | 62 | 8 | 1 | 1 | 62 | 1 | 60 | 8.53e-34 | 114 |
| Msa0580050 | MtrunA17_Chr6g0449641 | 78.431 | 51 | 11 | 0 | 14 | 64 | 8 | 58 | 8.19e-27 | 96.7 |
| Msa0580050 | MtrunA17_Chr6g0449651 | 76.471 | 51 | 12 | 0 | 14 | 64 | 66 | 116 | 5.11e-26 | 96.3 |
| Msa0580050 | MtrunA17_Chr5g0437571 | 78.846 | 52 | 11 | 0 | 11 | 62 | 2 | 53 | 9.79e-26 | 94.7 |
| Msa0580050 | MtrunA17_Chr3g0114061 | 74.138 | 58 | 11 | 1 | 5 | 62 | 2 | 55 | 1.26e-25 | 94.0 |
| Msa0580050 | MtrunA17_Chr3g0106101 | 76.000 | 50 | 12 | 0 | 13 | 62 | 5 | 54 | 1.61e-25 | 94.4 |
| Msa0580050 | MtrunA17_Chr7g0227511 | 74.000 | 50 | 13 | 0 | 14 | 63 | 10 | 59 | 6.74e-24 | 90.1 |
| Msa0580050 | MtrunA17_Chr4g0058651 | 72.549 | 51 | 14 | 0 | 14 | 64 | 10 | 60 | 3.81e-23 | 88.6 |
| Msa0580050 | MtrunA17_Chr3g0117121 | 72.549 | 51 | 14 | 0 | 14 | 64 | 9 | 59 | 8.28e-23 | 87.8 |
| Msa0580050 | MtrunA17_Chr2g0326041 | 60.000 | 60 | 24 | 0 | 10 | 69 | 28 | 87 | 1.50e-22 | 84.3 |
| Msa0580050 | MtrunA17_Chr3g0129071 | 76.000 | 50 | 12 | 0 | 14 | 63 | 46 | 95 | 2.23e-22 | 87.8 |
| Msa0580050 | MtrunA17_Chr5g0438091 | 69.811 | 53 | 16 | 0 | 11 | 63 | 35 | 87 | 2.91e-22 | 86.3 |
| Msa0580050 | MtrunA17_Chr5g0402611 | 73.469 | 49 | 13 | 0 | 14 | 62 | 7 | 55 | 1.31e-21 | 87.0 |
| Msa0580050 | MtrunA17_Chr8g0353981 | 69.388 | 49 | 15 | 0 | 14 | 62 | 6 | 54 | 2.74e-21 | 84.7 |
| Msa0580050 | MtrunA17_Chr5g0432451 | 70.588 | 51 | 15 | 0 | 13 | 63 | 41 | 91 | 3.44e-21 | 84.3 |
| Msa0580050 | MtrunA17_Chr3g0115431 | 62.963 | 54 | 20 | 0 | 13 | 66 | 7 | 60 | 6.33e-20 | 80.9 |
| Msa0580050 | MtrunA17_Chr3g0113891 | 69.231 | 52 | 16 | 0 | 12 | 63 | 11 | 62 | 8.71e-20 | 79.7 |
| Msa0580050 | MtrunA17_Chr3g0097221 | 69.388 | 49 | 15 | 0 | 14 | 62 | 6 | 54 | 9.12e-20 | 81.6 |
| Msa0580050 | MtrunA17_Chr5g0437401 | 48.780 | 82 | 33 | 2 | 12 | 85 | 8 | 88 | 4.35e-19 | 77.8 |
| Msa0580050 | MtrunA17_Chr4g0030001 | 68.000 | 50 | 15 | 1 | 14 | 62 | 23 | 72 | 1.45e-18 | 76.6 |
| Msa0580050 | MtrunA17_Chr5g0444351 | 63.830 | 47 | 17 | 0 | 16 | 62 | 6 | 52 | 3.37e-18 | 74.7 |
| Msa0580050 | MtrunA17_Chr7g0260971 | 64.706 | 51 | 17 | 1 | 11 | 60 | 10 | 60 | 5.57e-18 | 75.9 |
| Msa0580050 | MtrunA17_Chr7g0225111 | 59.184 | 49 | 20 | 0 | 14 | 62 | 4 | 52 | 7.22e-18 | 73.2 |
| Msa0580050 | MtrunA17_Chr6g0452671 | 56.250 | 48 | 21 | 0 | 16 | 63 | 12 | 59 | 1.53e-17 | 74.3 |
| Msa0580050 | MtrunA17_Chr4g0059901 | 58.491 | 53 | 22 | 0 | 9 | 61 | 4 | 56 | 2.17e-17 | 75.1 |
| Msa0580050 | MtrunA17_Chr6g0452661 | 58.333 | 48 | 20 | 0 | 16 | 63 | 10 | 57 | 4.64e-17 | 73.9 |
| Msa0580050 | MtrunA17_Chr1g0184281 | 52.459 | 61 | 28 | 1 | 1 | 60 | 1 | 61 | 6.62e-17 | 72.8 |
| Msa0580050 | MtrunA17_Chr1g0200201 | 63.830 | 47 | 17 | 0 | 16 | 62 | 73 | 119 | 6.94e-17 | 73.2 |
| Msa0580050 | MtrunA17_Chr6g0452691 | 58.696 | 46 | 19 | 0 | 16 | 61 | 10 | 55 | 1.65e-15 | 68.6 |
| Msa0580050 | MtrunA17_Chr8g0342351 | 58.696 | 46 | 19 | 0 | 16 | 61 | 13 | 58 | 1.71e-15 | 69.7 |
| Msa0580050 | MtrunA17_Chr8g0351721 | 55.000 | 60 | 24 | 2 | 2 | 60 | 7 | 64 | 2.60e-15 | 68.6 |
| Msa0580050 | MtrunA17_Chr6g0460951 | 64.583 | 48 | 16 | 1 | 14 | 60 | 39 | 86 | 4.52e-15 | 68.2 |
| Msa0580050 | MtrunA17_Chr7g0245871 | 63.830 | 47 | 16 | 1 | 15 | 60 | 27 | 73 | 6.42e-15 | 68.2 |
| Msa0580050 | MtrunA17_Chr7g0261031 | 58.824 | 51 | 20 | 1 | 11 | 60 | 4 | 54 | 8.72e-15 | 67.4 |
| Msa0580050 | MtrunA17_Chr8g0374591 | 42.647 | 68 | 38 | 1 | 15 | 81 | 8 | 75 | 9.22e-15 | 65.5 |
| Msa0580050 | MtrunA17_Chr8g0351701 | 60.000 | 50 | 19 | 1 | 15 | 63 | 23 | 72 | 1.04e-14 | 67.4 |
| Msa0580050 | MtrunA17_Chr5g0439111 | 44.615 | 65 | 36 | 0 | 16 | 80 | 10 | 74 | 1.29e-14 | 67.0 |
| Msa0580050 | MtrunA17_Chr5g0435641 | 56.863 | 51 | 21 | 1 | 11 | 60 | 3 | 53 | 1.55e-14 | 66.2 |
| Msa0580050 | MtrunA17_Chr8g0374601 | 53.846 | 52 | 24 | 0 | 15 | 66 | 26 | 77 | 4.83e-14 | 66.2 |
| Msa0580050 | MtrunA17_Chr8g0374581 | 61.224 | 49 | 18 | 1 | 15 | 62 | 8 | 56 | 7.42e-14 | 65.1 |
| Msa0580050 | MtrunA17_Chr4g0040831 | 40.984 | 61 | 36 | 0 | 1 | 61 | 1 | 61 | 8.83e-14 | 64.3 |
| Msa0580050 | MtrunA17_Chr4g0055441 | 54.167 | 48 | 22 | 0 | 16 | 63 | 3 | 50 | 1.67e-13 | 62.8 |
| Msa0580050 | MtrunA17_Chr1g0184271 | 57.447 | 47 | 19 | 1 | 15 | 60 | 12 | 58 | 2.20e-13 | 63.9 |
| Msa0580050 | MtrunA17_Chr6g0460941 | 57.447 | 47 | 19 | 1 | 15 | 60 | 7 | 53 | 7.38e-12 | 57.0 |
| Msa0580050 | MtrunA17_Chr2g0330201 | 43.396 | 53 | 30 | 0 | 11 | 63 | 15 | 67 | 9.85e-12 | 60.1 |
| Msa0580050 | MtrunA17_Chr7g0245861 | 51.562 | 64 | 23 | 4 | 1 | 60 | 1 | 60 | 7.40e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580050 | AT1G31320.1 | 85.484 | 62 | 7 | 1 | 1 | 62 | 1 | 60 | 1.55e-33 | 115 |
| Msa0580050 | AT2G30130.1 | 84.000 | 50 | 8 | 0 | 13 | 62 | 6 | 55 | 6.22e-27 | 98.6 |
| Msa0580050 | AT1G16530.1 | 70.690 | 58 | 16 | 1 | 6 | 62 | 5 | 62 | 1.33e-24 | 92.0 |
| Msa0580050 | AT5G63090.4 | 74.510 | 51 | 13 | 0 | 14 | 64 | 10 | 60 | 5.01e-24 | 91.3 |
| Msa0580050 | AT5G63090.3 | 74.510 | 51 | 13 | 0 | 14 | 64 | 10 | 60 | 5.01e-24 | 91.3 |
| Msa0580050 | AT5G63090.2 | 74.510 | 51 | 13 | 0 | 14 | 64 | 10 | 60 | 5.01e-24 | 91.3 |
| Msa0580050 | AT5G63090.1 | 74.510 | 51 | 13 | 0 | 14 | 64 | 10 | 60 | 5.01e-24 | 91.3 |
| Msa0580050 | AT2G40470.2 | 78.000 | 50 | 11 | 0 | 14 | 63 | 19 | 68 | 1.14e-23 | 90.5 |
| Msa0580050 | AT3G27650.1 | 72.000 | 50 | 14 | 0 | 14 | 63 | 38 | 87 | 1.59e-23 | 89.0 |
| Msa0580050 | AT2G40470.1 | 78.000 | 50 | 11 | 0 | 14 | 63 | 44 | 93 | 2.32e-23 | 90.1 |
| Msa0580050 | AT2G30340.1 | 43.103 | 116 | 54 | 2 | 11 | 114 | 48 | 163 | 9.31e-23 | 89.7 |
| Msa0580050 | AT1G65620.1 | 75.510 | 49 | 12 | 0 | 14 | 62 | 8 | 56 | 1.03e-22 | 88.2 |
| Msa0580050 | AT1G65620.4 | 75.510 | 49 | 12 | 0 | 14 | 62 | 8 | 56 | 1.03e-22 | 88.2 |
| Msa0580050 | AT1G65620.3 | 75.510 | 49 | 12 | 0 | 14 | 62 | 8 | 56 | 1.03e-22 | 88.2 |
| Msa0580050 | AT1G65620.5 | 75.510 | 49 | 12 | 0 | 14 | 62 | 8 | 56 | 1.03e-22 | 88.2 |
| Msa0580050 | AT1G65620.2 | 75.510 | 49 | 12 | 0 | 14 | 62 | 8 | 56 | 1.03e-22 | 88.2 |
| Msa0580050 | AT2G30340.2 | 43.103 | 116 | 54 | 2 | 11 | 114 | 49 | 164 | 1.05e-22 | 89.4 |
| Msa0580050 | AT5G66870.1 | 69.091 | 55 | 17 | 0 | 12 | 66 | 4 | 58 | 2.07e-22 | 89.4 |
| Msa0580050 | AT2G23660.2 | 66.667 | 51 | 17 | 0 | 12 | 62 | 2 | 52 | 2.60e-20 | 84.0 |
| Msa0580050 | AT2G23660.3 | 66.667 | 51 | 17 | 0 | 12 | 62 | 2 | 52 | 2.60e-20 | 84.0 |
| Msa0580050 | AT2G23660.1 | 66.667 | 51 | 17 | 0 | 12 | 62 | 2 | 52 | 2.60e-20 | 84.0 |
| Msa0580050 | AT3G26660.1 | 65.957 | 47 | 16 | 0 | 16 | 62 | 6 | 52 | 7.79e-20 | 78.6 |
| Msa0580050 | AT3G26620.1 | 65.957 | 47 | 16 | 0 | 16 | 62 | 6 | 52 | 9.16e-20 | 78.6 |
| Msa0580050 | AT1G07900.1 | 67.347 | 49 | 16 | 0 | 14 | 62 | 32 | 80 | 3.00e-19 | 79.0 |
| Msa0580050 | AT2G28500.1 | 67.347 | 49 | 16 | 0 | 14 | 62 | 54 | 102 | 3.39e-19 | 79.7 |
| Msa0580050 | AT2G42430.1 | 55.738 | 61 | 26 | 1 | 1 | 60 | 1 | 61 | 1.55e-18 | 78.2 |
| Msa0580050 | AT3G11090.1 | 47.561 | 82 | 34 | 2 | 12 | 85 | 8 | 88 | 2.32e-18 | 75.9 |
| Msa0580050 | AT3G03760.1 | 60.000 | 50 | 19 | 1 | 14 | 62 | 50 | 99 | 3.82e-15 | 69.3 |
| Msa0580050 | AT3G47870.1 | 54.717 | 53 | 24 | 0 | 9 | 61 | 30 | 82 | 4.54e-15 | 69.7 |
| Msa0580050 | AT3G50510.1 | 56.250 | 48 | 21 | 0 | 13 | 60 | 10 | 57 | 7.19e-15 | 67.8 |
| Msa0580050 | AT3G50510.2 | 56.250 | 48 | 21 | 0 | 13 | 60 | 10 | 57 | 7.19e-15 | 67.8 |
| Msa0580050 | AT2G42440.1 | 56.863 | 51 | 21 | 1 | 11 | 60 | 3 | 53 | 9.83e-15 | 68.2 |
| Msa0580050 | AT3G13850.1 | 58.696 | 46 | 19 | 0 | 16 | 61 | 37 | 82 | 1.48e-14 | 67.8 |
| Msa0580050 | AT1G72980.1 | 50.980 | 51 | 25 | 0 | 11 | 61 | 9 | 59 | 2.15e-14 | 66.6 |
| Msa0580050 | AT4G00210.1 | 57.692 | 52 | 21 | 1 | 11 | 61 | 7 | 58 | 2.49e-14 | 66.6 |
| Msa0580050 | AT5G06080.1 | 60.417 | 48 | 18 | 1 | 14 | 60 | 6 | 53 | 8.19e-14 | 64.3 |
| Msa0580050 | AT2G31310.1 | 54.902 | 51 | 22 | 1 | 11 | 60 | 3 | 53 | 1.18e-13 | 64.3 |
| Msa0580050 | AT3G58190.1 | 59.574 | 47 | 18 | 1 | 15 | 60 | 11 | 57 | 1.27e-13 | 64.7 |
| Msa0580050 | AT1G06280.1 | 38.028 | 71 | 40 | 1 | 16 | 86 | 25 | 91 | 1.86e-12 | 61.2 |
| Msa0580050 | AT2G45410.1 | 63.636 | 44 | 15 | 1 | 18 | 60 | 19 | 62 | 2.41e-12 | 60.8 |
| Msa0580050 | AT4G00220.1 | 57.447 | 47 | 19 | 1 | 18 | 63 | 20 | 66 | 2.47e-12 | 61.2 |
| Msa0580050 | AT2G19820.1 | 47.917 | 48 | 25 | 0 | 14 | 61 | 11 | 58 | 6.89e-12 | 58.2 |
| Msa0580050 | AT2G45420.1 | 61.364 | 44 | 16 | 1 | 18 | 60 | 40 | 83 | 1.07e-11 | 60.1 |
| Msa0580050 | AT5G15060.1 | 38.710 | 62 | 38 | 0 | 1 | 62 | 3 | 64 | 1.49e-11 | 57.8 |
Find 38 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGAGACCTTGTCCTCCTT+CGG | 0.299553 | 4_1:-85051715 | Msa0580050:CDS |
| GCTAATGTTCACAAAGTCTT+TGG | 0.302464 | 4_1:-85052422 | Msa0580050:CDS |
| CAATGTCAACAAGATGCTTC+AGG | 0.375428 | 4_1:-85052393 | Msa0580050:intron |
| AGGAGACCTTGTCCTCCTTC+GGG | 0.383902 | 4_1:-85051714 | Msa0580050:CDS |
| GGCTCATCAGCAGGGAAGTA+AGG | 0.414185 | 4_1:+85052455 | None:intergenic |
| GAGGGTTCTCCCCTCGCAAT+TGG | 0.414797 | 4_1:+85051351 | None:intergenic |
| GGAGAACCCTCGCGGAGGGC+GGG | 0.444067 | 4_1:-85051339 | Msa0580050:CDS |
| AACTTGTGAGGCTCATCAGC+AGG | 0.445267 | 4_1:+85052446 | None:intergenic |
| AATGGCCGAGAATGAAAGTT+GGG | 0.449524 | 4_1:-85051674 | Msa0580050:CDS |
| CTCGCGGAGGGCGGGTGCCA+AGG | 0.464300 | 4_1:-85051331 | Msa0580050:CDS |
| GGGAGAACCCTCGCGGAGGG+CGG | 0.475488 | 4_1:-85051340 | Msa0580050:CDS |
| GGGGACGTGGGCAACAAGAA+TGG | 0.483930 | 4_1:-85051692 | Msa0580050:CDS |
| GTACTGGCGGTGACCCTGTA+TGG | 0.493160 | 4_1:+85051635 | None:intergenic |
| CAAATTGGGAGGGACCATAC+AGG | 0.493714 | 4_1:-85051649 | Msa0580050:CDS |
| TTGGCACCCGCCCTCCGCGA+GGG | 0.519498 | 4_1:+85051333 | None:intergenic |
| GAGACCTTGTCCTCCTTCGG+GGG | 0.536420 | 4_1:-85051712 | Msa0580050:CDS |
| CTACTTGAGAGTAGAAGCCT+TGG | 0.540265 | 4_1:+85051314 | None:intergenic |
| GGAGACCTTGTCCTCCTTCG+GGG | 0.543235 | 4_1:-85051713 | Msa0580050:CDS |
| GAATGGCCGAGAATGAAAGT+TGG | 0.553561 | 4_1:-85051675 | Msa0580050:CDS |
| TAATTAACGAACATGAAAGA+AGG | 0.557964 | 4_1:-85052566 | None:intergenic |
| CTTGGCACCCGCCCTCCGCG+AGG | 0.566705 | 4_1:+85051332 | None:intergenic |
| GAGGGGAGAACCCTCGCGGA+GGG | 0.569852 | 4_1:-85051343 | Msa0580050:CDS |
| CTTGCATGCAGCACAAGGTG+AGG | 0.585794 | 4_1:+85052517 | None:intergenic |
| AGAAGCTTGCATGCAGCACA+AGG | 0.589929 | 4_1:+85052512 | None:intergenic |
| AAATTGGGAGGGACCATACA+GGG | 0.591549 | 4_1:-85051648 | Msa0580050:CDS |
| GGACTCAATTCCAATTGCGA+GGG | 0.607193 | 4_1:-85051361 | Msa0580050:CDS |
| AGGACTCAATTCCAATTGCG+AGG | 0.614052 | 4_1:-85051362 | Msa0580050:CDS |
| AGACCTTGTCCTCCTTCGGG+GGG | 0.619485 | 4_1:-85051711 | Msa0580050:CDS |
| TTAACGAACATGAAAGAAGG+TGG | 0.619833 | 4_1:-85052563 | None:intergenic |
| TGAACATTAGCAAACTTGTG+AGG | 0.627465 | 4_1:+85052434 | None:intergenic |
| ACGAACATGAAAGAAGGTGG+AGG | 0.638440 | 4_1:-85052560 | None:intergenic |
| CGAGGGGAGAACCCTCGCGG+AGG | 0.640903 | 4_1:-85051344 | Msa0580050:CDS |
| GGTGGAGGTAACAAGAAGCA+AGG | 0.642495 | 4_1:-85052545 | Msa0580050:CDS |
| ACTTGTGAGGCTCATCAGCA+GGG | 0.650475 | 4_1:+85052447 | None:intergenic |
| ATGGCCGAGAATGAAAGTTG+GGG | 0.652879 | 4_1:-85051673 | Msa0580050:CDS |
| GACTCAATTCCAATTGCGAG+GGG | 0.668163 | 4_1:-85051360 | Msa0580050:CDS |
| TTGCGAGGGGAGAACCCTCG+CGG | 0.693082 | 4_1:-85051347 | Msa0580050:CDS |
| TGGCCGAGAATGAAAGTTGG+GGG | 0.699954 | 4_1:-85051672 | Msa0580050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATACTACATTATAATATT+AGG | - | chr4_1:85051817-85051836 | Msa0580050:intron | 10.0% |
| !! | ATATACTACATTATAATATT+AGG | - | chr4_1:85051817-85051836 | Msa0580050:intron | 10.0% |
| !! | ATATTATGAACACTAATAAA+CGG | - | chr4_1:85052425-85052444 | Msa0580050:CDS | 15.0% |
| !! | ATATTATGAACACTAATAAA+CGG | - | chr4_1:85052425-85052444 | Msa0580050:CDS | 15.0% |
| !! | TATAATATAGGGTAGAAATA+GGG | + | chr4_1:85051723-85051742 | None:intergenic | 20.0% |
| !! | TTATAATATAGGGTAGAAAT+AGG | + | chr4_1:85051724-85051743 | None:intergenic | 20.0% |
| !!! | GAACAACTTGTTATAATATA+GGG | + | chr4_1:85051734-85051753 | None:intergenic | 20.0% |
| !!! | TGAACAACTTGTTATAATAT+AGG | + | chr4_1:85051735-85051754 | None:intergenic | 20.0% |
| !! | TATAATATAGGGTAGAAATA+GGG | + | chr4_1:85051723-85051742 | None:intergenic | 20.0% |
| !! | TTATAATATAGGGTAGAAAT+AGG | + | chr4_1:85051724-85051743 | None:intergenic | 20.0% |
| !!! | GAACAACTTGTTATAATATA+GGG | + | chr4_1:85051734-85051753 | None:intergenic | 20.0% |
| !!! | TGAACAACTTGTTATAATAT+AGG | + | chr4_1:85051735-85051754 | None:intergenic | 20.0% |
| !!! | TATTCAACCCTTTATTTCTA+CGG | - | chr4_1:85051525-85051544 | Msa0580050:intron | 25.0% |
| ! | GTATTATCCGTAGAAATAAA+GGG | + | chr4_1:85051535-85051554 | None:intergenic | 25.0% |
| ! | AGTATTATCCGTAGAAATAA+AGG | + | chr4_1:85051536-85051555 | None:intergenic | 25.0% |
| !! | TATTTCTACGGATAATACTT+TGG | - | chr4_1:85051537-85051556 | Msa0580050:intron | 25.0% |
| ! | TGATATCAGTTAACTTAAGT+GGG | + | chr4_1:85051782-85051801 | None:intergenic | 25.0% |
| ! | TTGATATCAGTTAACTTAAG+TGG | + | chr4_1:85051783-85051802 | None:intergenic | 25.0% |
| !! | TCTTTTGTACTGAAATAAGA+TGG | + | chr4_1:85051993-85052012 | None:intergenic | 25.0% |
| !!! | TATTCAACCCTTTATTTCTA+CGG | - | chr4_1:85051525-85051544 | Msa0580050:intron | 25.0% |
| ! | GTATTATCCGTAGAAATAAA+GGG | + | chr4_1:85051535-85051554 | None:intergenic | 25.0% |
| ! | AGTATTATCCGTAGAAATAA+AGG | + | chr4_1:85051536-85051555 | None:intergenic | 25.0% |
| !! | TATTTCTACGGATAATACTT+TGG | - | chr4_1:85051537-85051556 | Msa0580050:intron | 25.0% |
| ! | TGATATCAGTTAACTTAAGT+GGG | + | chr4_1:85051782-85051801 | None:intergenic | 25.0% |
| ! | TTGATATCAGTTAACTTAAG+TGG | + | chr4_1:85051783-85051802 | None:intergenic | 25.0% |
| !! | TCTTTTGTACTGAAATAAGA+TGG | + | chr4_1:85051993-85052012 | None:intergenic | 25.0% |
| GAATATGTAGAAGATAAGAG+TGG | + | chr4_1:85051510-85051529 | None:intergenic | 30.0% | |
| ATATCAGTTAACTTAAGTGG+GGG | + | chr4_1:85051780-85051799 | None:intergenic | 30.0% | |
| GATATCAGTTAACTTAAGTG+GGG | + | chr4_1:85051781-85051800 | None:intergenic | 30.0% | |
| ATATTAGGACATGACATTTG+TGG | - | chr4_1:85051832-85051851 | Msa0580050:intron | 30.0% | |
| TATTATAACTAAACTCCGGT+AGG | - | chr4_1:85052346-85052365 | Msa0580050:intron | 30.0% | |
| GAATATGTAGAAGATAAGAG+TGG | + | chr4_1:85051510-85051529 | None:intergenic | 30.0% | |
| ATATCAGTTAACTTAAGTGG+GGG | + | chr4_1:85051780-85051799 | None:intergenic | 30.0% | |
| GATATCAGTTAACTTAAGTG+GGG | + | chr4_1:85051781-85051800 | None:intergenic | 30.0% | |
| ATATTAGGACATGACATTTG+TGG | - | chr4_1:85051832-85051851 | Msa0580050:intron | 30.0% | |
| TATTATAACTAAACTCCGGT+AGG | - | chr4_1:85052346-85052365 | Msa0580050:intron | 30.0% | |
| TGAACATTAGCAAACTTGTG+AGG | + | chr4_1:85051437-85051456 | None:intergenic | 35.0% | |
| GCTAATGTTCACAAAGTCTT+TGG | - | chr4_1:85051446-85051465 | Msa0580050:intron | 35.0% | |
| TGTATGGGTGACATTAAATC+TGG | - | chr4_1:85051628-85051647 | Msa0580050:intron | 35.0% | |
| GTATGGGTGACATTAAATCT+GGG | - | chr4_1:85051629-85051648 | Msa0580050:intron | 35.0% | |
| AATATAGGGTAGAAATAGGG+TGG | + | chr4_1:85051720-85051739 | None:intergenic | 35.0% | |
| GCGCTATTATAACTAAACTC+CGG | - | chr4_1:85052342-85052361 | Msa0580050:intron | 35.0% | |
| TAAAGATGAAATGAGCCTAC+CGG | + | chr4_1:85052364-85052383 | None:intergenic | 35.0% | |
| !!! | CTCTTTGTTTTGTGATTGAC+AGG | - | chr4_1:85052486-85052505 | Msa0580050:CDS | 35.0% |
| TGAACATTAGCAAACTTGTG+AGG | + | chr4_1:85051437-85051456 | None:intergenic | 35.0% | |
| GCTAATGTTCACAAAGTCTT+TGG | - | chr4_1:85051446-85051465 | Msa0580050:intron | 35.0% | |
| TGTATGGGTGACATTAAATC+TGG | - | chr4_1:85051628-85051647 | Msa0580050:intron | 35.0% | |
| GTATGGGTGACATTAAATCT+GGG | - | chr4_1:85051629-85051648 | Msa0580050:intron | 35.0% | |
| AATATAGGGTAGAAATAGGG+TGG | + | chr4_1:85051720-85051739 | None:intergenic | 35.0% | |
| GCGCTATTATAACTAAACTC+CGG | - | chr4_1:85052342-85052361 | Msa0580050:intron | 35.0% | |
| TAAAGATGAAATGAGCCTAC+CGG | + | chr4_1:85052364-85052383 | None:intergenic | 35.0% | |
| !!! | CTCTTTGTTTTGTGATTGAC+AGG | - | chr4_1:85052486-85052505 | Msa0580050:CDS | 35.0% |
| CAATGTCAACAAGATGCTTC+AGG | - | chr4_1:85051475-85051494 | Msa0580050:intron | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | - | chr4_1:85051568-85051587 | Msa0580050:intron | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | - | chr4_1:85051569-85051588 | Msa0580050:intron | 40.0% | |
| ATTAAATCTGGGCCACACAA+AGG | - | chr4_1:85051580-85051599 | Msa0580050:intron | 40.0% | |
| TTAAATCTGGGCCACACAAA+GGG | - | chr4_1:85051581-85051600 | Msa0580050:intron | 40.0% | |
| ATTAAATCTGGGCCACACAA+AGG | - | chr4_1:85051580-85051599 | Msa0580050:intron | 40.0% | |
| GTGGCTCAGATTTAATGTCA+CGG | - | chr4_1:85051673-85051692 | Msa0580050:CDS | 40.0% | |
| AATGGCCGAGAATGAAAGTT+GGG | - | chr4_1:85052194-85052213 | Msa0580050:intron | 40.0% | |
| AATGAAAGTTGGGGGCAAAT+TGG | - | chr4_1:85052204-85052223 | Msa0580050:intron | 40.0% | |
| ATGAAAGTTGGGGGCAAATT+GGG | - | chr4_1:85052205-85052224 | Msa0580050:intron | 40.0% | |
| CAATGTCAACAAGATGCTTC+AGG | - | chr4_1:85051475-85051494 | Msa0580050:intron | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | - | chr4_1:85051568-85051587 | Msa0580050:intron | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | - | chr4_1:85051569-85051588 | Msa0580050:intron | 40.0% | |
| ATTAAATCTGGGCCACACAA+AGG | - | chr4_1:85051580-85051599 | Msa0580050:intron | 40.0% | |
| TTAAATCTGGGCCACACAAA+GGG | - | chr4_1:85051581-85051600 | Msa0580050:intron | 40.0% | |
| ATTAAATCTGGGCCACACAA+AGG | - | chr4_1:85051580-85051599 | Msa0580050:intron | 40.0% | |
| GTGGCTCAGATTTAATGTCA+CGG | - | chr4_1:85051673-85051692 | Msa0580050:CDS | 40.0% | |
| AATGGCCGAGAATGAAAGTT+GGG | - | chr4_1:85052194-85052213 | Msa0580050:intron | 40.0% | |
| AATGAAAGTTGGGGGCAAAT+TGG | - | chr4_1:85052204-85052223 | Msa0580050:intron | 40.0% | |
| ATGAAAGTTGGGGGCAAATT+GGG | - | chr4_1:85052205-85052224 | Msa0580050:intron | 40.0% | |
| GTGGCCCAGATTTAATGTCA+CGG | + | chr4_1:85051576-85051595 | None:intergenic | 45.0% | |
| ACACAACACAACCCTTTGTG+TGG | + | chr4_1:85051595-85051614 | None:intergenic | 45.0% | |
| ACACAAAGGGTTGTGTTGTG+TGG | - | chr4_1:85051594-85051613 | Msa0580050:intron | 45.0% | |
| GTCACCCATACAACACATCT+GGG | + | chr4_1:85051620-85051639 | None:intergenic | 45.0% | |
| TGTCACCCATACAACACATC+TGG | + | chr4_1:85051621-85051640 | None:intergenic | 45.0% | |
| ACACAACACACACCTTTGTG+TGG | + | chr4_1:85051655-85051674 | None:intergenic | 45.0% | |
| ! | ACACAAAGGTGTGTGTTGTG+TGG | - | chr4_1:85051654-85051673 | Msa0580050:CDS | 45.0% |
| GTAGAAATAGGGTGGCACTT+TGG | + | chr4_1:85051712-85051731 | None:intergenic | 45.0% | |
| GAATGGCCGAGAATGAAAGT+TGG | - | chr4_1:85052193-85052212 | Msa0580050:intron | 45.0% | |
| ATGGCCGAGAATGAAAGTTG+GGG | - | chr4_1:85052195-85052214 | Msa0580050:intron | 45.0% | |
| TTGCCCCCAACTTTCATTCT+CGG | + | chr4_1:85052202-85052221 | None:intergenic | 45.0% | |
| AAATTGGGAGGGACCATACA+GGG | - | chr4_1:85052220-85052239 | Msa0580050:intron | 45.0% | |
| GTAAGCGTCAATCCATGTAC+TGG | + | chr4_1:85052252-85052271 | None:intergenic | 45.0% | |
| TACATCCTCGAATCTCTGGA+CGG | - | chr4_1:85052269-85052288 | Msa0580050:intron | 45.0% | |
| TCCATGTTCAGGGGATTAGA+AGG | + | chr4_1:85052295-85052314 | None:intergenic | 45.0% | |
| CATCTGCATTCCATGTTCAG+GGG | + | chr4_1:85052304-85052323 | None:intergenic | 45.0% | |
| CCATCTGCATTCCATGTTCA+GGG | + | chr4_1:85052305-85052324 | None:intergenic | 45.0% | |
| TCCATCTGCATTCCATGTTC+AGG | + | chr4_1:85052306-85052325 | None:intergenic | 45.0% | |
| AGGACTCAATTCCAATTGCG+AGG | - | chr4_1:85052506-85052525 | Msa0580050:CDS | 45.0% | |
| GGACTCAATTCCAATTGCGA+GGG | - | chr4_1:85052507-85052526 | Msa0580050:CDS | 45.0% | |
| GACTCAATTCCAATTGCGAG+GGG | - | chr4_1:85052508-85052527 | Msa0580050:CDS | 45.0% | |
| CTACTTGAGAGTAGAAGCCT+TGG | + | chr4_1:85052557-85052576 | None:intergenic | 45.0% | |
| GTGGCCCAGATTTAATGTCA+CGG | + | chr4_1:85051576-85051595 | None:intergenic | 45.0% | |
| ACACAACACAACCCTTTGTG+TGG | + | chr4_1:85051595-85051614 | None:intergenic | 45.0% | |
| ACACAAAGGGTTGTGTTGTG+TGG | - | chr4_1:85051594-85051613 | Msa0580050:intron | 45.0% | |
| GTCACCCATACAACACATCT+GGG | + | chr4_1:85051620-85051639 | None:intergenic | 45.0% | |
| TGTCACCCATACAACACATC+TGG | + | chr4_1:85051621-85051640 | None:intergenic | 45.0% | |
| ACACAACACACACCTTTGTG+TGG | + | chr4_1:85051655-85051674 | None:intergenic | 45.0% | |
| ! | ACACAAAGGTGTGTGTTGTG+TGG | - | chr4_1:85051654-85051673 | Msa0580050:CDS | 45.0% |
| GTAGAAATAGGGTGGCACTT+TGG | + | chr4_1:85051712-85051731 | None:intergenic | 45.0% | |
| GAATGGCCGAGAATGAAAGT+TGG | - | chr4_1:85052193-85052212 | Msa0580050:intron | 45.0% | |
| ATGGCCGAGAATGAAAGTTG+GGG | - | chr4_1:85052195-85052214 | Msa0580050:intron | 45.0% | |
| TTGCCCCCAACTTTCATTCT+CGG | + | chr4_1:85052202-85052221 | None:intergenic | 45.0% | |
| AAATTGGGAGGGACCATACA+GGG | - | chr4_1:85052220-85052239 | Msa0580050:intron | 45.0% | |
| GTAAGCGTCAATCCATGTAC+TGG | + | chr4_1:85052252-85052271 | None:intergenic | 45.0% | |
| TACATCCTCGAATCTCTGGA+CGG | - | chr4_1:85052269-85052288 | Msa0580050:intron | 45.0% | |
| TCCATGTTCAGGGGATTAGA+AGG | + | chr4_1:85052295-85052314 | None:intergenic | 45.0% | |
| CATCTGCATTCCATGTTCAG+GGG | + | chr4_1:85052304-85052323 | None:intergenic | 45.0% | |
| CCATCTGCATTCCATGTTCA+GGG | + | chr4_1:85052305-85052324 | None:intergenic | 45.0% | |
| TCCATCTGCATTCCATGTTC+AGG | + | chr4_1:85052306-85052325 | None:intergenic | 45.0% | |
| AGGACTCAATTCCAATTGCG+AGG | - | chr4_1:85052506-85052525 | Msa0580050:CDS | 45.0% | |
| GGACTCAATTCCAATTGCGA+GGG | - | chr4_1:85052507-85052526 | Msa0580050:CDS | 45.0% | |
| GACTCAATTCCAATTGCGAG+GGG | - | chr4_1:85052508-85052527 | Msa0580050:CDS | 45.0% | |
| CTACTTGAGAGTAGAAGCCT+TGG | + | chr4_1:85052557-85052576 | None:intergenic | 45.0% | |
| GGTGGAGGTAACAAGAAGCA+AGG | - | chr4_1:85051323-85051342 | Msa0580050:CDS | 50.0% | |
| AGAAGCTTGCATGCAGCACA+AGG | + | chr4_1:85051359-85051378 | None:intergenic | 50.0% | |
| ACTTGTGAGGCTCATCAGCA+GGG | + | chr4_1:85051424-85051443 | None:intergenic | 50.0% | |
| AACTTGTGAGGCTCATCAGC+AGG | + | chr4_1:85051425-85051444 | None:intergenic | 50.0% | |
| TGTGGCCCAGATGTGTTGTA+TGG | - | chr4_1:85051612-85051631 | Msa0580050:intron | 50.0% | |
| GTGGCCCAGATGTGTTGTAT+GGG | - | chr4_1:85051613-85051632 | Msa0580050:intron | 50.0% | |
| TGGCCGAGAATGAAAGTTGG+GGG | - | chr4_1:85052196-85052215 | Msa0580050:intron | 50.0% | |
| AAAGTTGGGGGCAAATTGGG+AGG | - | chr4_1:85052208-85052227 | Msa0580050:intron | 50.0% | |
| AAGTTGGGGGCAAATTGGGA+GGG | - | chr4_1:85052209-85052228 | Msa0580050:intron | 50.0% | |
| CAAATTGGGAGGGACCATAC+AGG | - | chr4_1:85052219-85052238 | Msa0580050:intron | 50.0% | |
| AGCGTCAATCCATGTACTGG+CGG | + | chr4_1:85052249-85052268 | None:intergenic | 50.0% | |
| CGCTTACATCCTCGAATCTC+TGG | - | chr4_1:85052265-85052284 | Msa0580050:intron | 50.0% | |
| GCCTTCTAATCCCCTGAACA+TGG | - | chr4_1:85052291-85052310 | Msa0580050:intron | 50.0% | |
| CCCTGAACATGGAATGCAGA+TGG | - | chr4_1:85052302-85052321 | Msa0580050:intron | 50.0% | |
| ATAAACGGACGCCTTTCCCA+AGG | - | chr4_1:85052440-85052459 | Msa0580050:CDS | 50.0% | |
| TAAACGGACGCCTTTCCCAA+GGG | - | chr4_1:85052441-85052460 | Msa0580050:CDS | 50.0% | |
| CAACTAACGTGCTTCCCCTT+GGG | + | chr4_1:85052459-85052478 | None:intergenic | 50.0% | |
| GGTGGAGGTAACAAGAAGCA+AGG | - | chr4_1:85051323-85051342 | Msa0580050:CDS | 50.0% | |
| AGAAGCTTGCATGCAGCACA+AGG | + | chr4_1:85051359-85051378 | None:intergenic | 50.0% | |
| ACTTGTGAGGCTCATCAGCA+GGG | + | chr4_1:85051424-85051443 | None:intergenic | 50.0% | |
| AACTTGTGAGGCTCATCAGC+AGG | + | chr4_1:85051425-85051444 | None:intergenic | 50.0% | |
| TGTGGCCCAGATGTGTTGTA+TGG | - | chr4_1:85051612-85051631 | Msa0580050:intron | 50.0% | |
| GTGGCCCAGATGTGTTGTAT+GGG | - | chr4_1:85051613-85051632 | Msa0580050:intron | 50.0% | |
| TGGCCGAGAATGAAAGTTGG+GGG | - | chr4_1:85052196-85052215 | Msa0580050:intron | 50.0% | |
| AAAGTTGGGGGCAAATTGGG+AGG | - | chr4_1:85052208-85052227 | Msa0580050:intron | 50.0% | |
| AAGTTGGGGGCAAATTGGGA+GGG | - | chr4_1:85052209-85052228 | Msa0580050:intron | 50.0% | |
| CAAATTGGGAGGGACCATAC+AGG | - | chr4_1:85052219-85052238 | Msa0580050:intron | 50.0% | |
| AGCGTCAATCCATGTACTGG+CGG | + | chr4_1:85052249-85052268 | None:intergenic | 50.0% | |
| CGCTTACATCCTCGAATCTC+TGG | - | chr4_1:85052265-85052284 | Msa0580050:intron | 50.0% | |
| GCCTTCTAATCCCCTGAACA+TGG | - | chr4_1:85052291-85052310 | Msa0580050:intron | 50.0% | |
| CCCTGAACATGGAATGCAGA+TGG | - | chr4_1:85052302-85052321 | Msa0580050:intron | 50.0% | |
| ATAAACGGACGCCTTTCCCA+AGG | - | chr4_1:85052440-85052459 | Msa0580050:CDS | 50.0% | |
| TAAACGGACGCCTTTCCCAA+GGG | - | chr4_1:85052441-85052460 | Msa0580050:CDS | 50.0% | |
| CAACTAACGTGCTTCCCCTT+GGG | + | chr4_1:85052459-85052478 | None:intergenic | 50.0% | |
| CTTGCATGCAGCACAAGGTG+AGG | + | chr4_1:85051354-85051373 | None:intergenic | 55.0% | |
| GGCTCATCAGCAGGGAAGTA+AGG | + | chr4_1:85051416-85051435 | None:intergenic | 55.0% | |
| GAAGGAGGACAAGGTCTCCT+GGG | + | chr4_1:85052154-85052173 | None:intergenic | 55.0% | |
| CAGGAGACCTTGTCCTCCTT+CGG | - | chr4_1:85052153-85052172 | Msa0580050:intron | 55.0% | |
| AGGAGACCTTGTCCTCCTTC+GGG | - | chr4_1:85052154-85052173 | Msa0580050:intron | 55.0% | |
| AAACGGACGCCTTTCCCAAG+GGG | - | chr4_1:85052442-85052461 | Msa0580050:CDS | 55.0% | |
| AACGTGCTTCCCCTTGGGAA+AGG | + | chr4_1:85052454-85052473 | None:intergenic | 55.0% | |
| GCAACTAACGTGCTTCCCCT+TGG | + | chr4_1:85052460-85052479 | None:intergenic | 55.0% | |
| CTTGCATGCAGCACAAGGTG+AGG | + | chr4_1:85051354-85051373 | None:intergenic | 55.0% | |
| GGCTCATCAGCAGGGAAGTA+AGG | + | chr4_1:85051416-85051435 | None:intergenic | 55.0% | |
| GAAGGAGGACAAGGTCTCCT+GGG | + | chr4_1:85052154-85052173 | None:intergenic | 55.0% | |
| CAGGAGACCTTGTCCTCCTT+CGG | - | chr4_1:85052153-85052172 | Msa0580050:intron | 55.0% | |
| AGGAGACCTTGTCCTCCTTC+GGG | - | chr4_1:85052154-85052173 | Msa0580050:intron | 55.0% | |
| AAACGGACGCCTTTCCCAAG+GGG | - | chr4_1:85052442-85052461 | Msa0580050:CDS | 55.0% | |
| AACGTGCTTCCCCTTGGGAA+AGG | + | chr4_1:85052454-85052473 | None:intergenic | 55.0% | |
| GCAACTAACGTGCTTCCCCT+TGG | + | chr4_1:85052460-85052479 | None:intergenic | 55.0% | |
| AGGTCTAGCGACTTCGTCCC+AGG | - | chr4_1:85052134-85052153 | Msa0580050:intron | 60.0% | |
| CGAAGGAGGACAAGGTCTCC+TGG | + | chr4_1:85052155-85052174 | None:intergenic | 60.0% | |
| GGAGACCTTGTCCTCCTTCG+GGG | - | chr4_1:85052155-85052174 | Msa0580050:intron | 60.0% | |
| GAGACCTTGTCCTCCTTCGG+GGG | - | chr4_1:85052156-85052175 | Msa0580050:intron | 60.0% | |
| AGACCTTGTCCTCCTTCGGG+GGG | - | chr4_1:85052157-85052176 | Msa0580050:intron | 60.0% | |
| GGGGACGTGGGCAACAAGAA+TGG | - | chr4_1:85052176-85052195 | Msa0580050:intron | 60.0% | |
| ! | GTACTGGCGGTGACCCTGTA+TGG | + | chr4_1:85052236-85052255 | None:intergenic | 60.0% |
| ACAGGGTCACCGCCAGTACA+TGG | - | chr4_1:85052237-85052256 | Msa0580050:intron | 60.0% | |
| GAAGGCCGTCCAGAGATTCG+AGG | + | chr4_1:85052277-85052296 | None:intergenic | 60.0% | |
| GAGGGTTCTCCCCTCGCAAT+TGG | + | chr4_1:85052520-85052539 | None:intergenic | 60.0% | |
| AGGTCTAGCGACTTCGTCCC+AGG | - | chr4_1:85052134-85052153 | Msa0580050:intron | 60.0% | |
| CGAAGGAGGACAAGGTCTCC+TGG | + | chr4_1:85052155-85052174 | None:intergenic | 60.0% | |
| GGAGACCTTGTCCTCCTTCG+GGG | - | chr4_1:85052155-85052174 | Msa0580050:intron | 60.0% | |
| GAGACCTTGTCCTCCTTCGG+GGG | - | chr4_1:85052156-85052175 | Msa0580050:intron | 60.0% | |
| AGACCTTGTCCTCCTTCGGG+GGG | - | chr4_1:85052157-85052176 | Msa0580050:intron | 60.0% | |
| GGGGACGTGGGCAACAAGAA+TGG | - | chr4_1:85052176-85052195 | Msa0580050:intron | 60.0% | |
| ! | GTACTGGCGGTGACCCTGTA+TGG | + | chr4_1:85052236-85052255 | None:intergenic | 60.0% |
| ACAGGGTCACCGCCAGTACA+TGG | - | chr4_1:85052237-85052256 | Msa0580050:intron | 60.0% | |
| GAAGGCCGTCCAGAGATTCG+AGG | + | chr4_1:85052277-85052296 | None:intergenic | 60.0% | |
| GAGGGTTCTCCCCTCGCAAT+TGG | + | chr4_1:85052520-85052539 | None:intergenic | 60.0% | |
| TTGCGAGGGGAGAACCCTCG+CGG | - | chr4_1:85052521-85052540 | Msa0580050:CDS | 65.0% | |
| TTGCGAGGGGAGAACCCTCG+CGG | - | chr4_1:85052521-85052540 | Msa0580050:CDS | 65.0% | |
| CGTCCCCCCGAAGGAGGACA+AGG | + | chr4_1:85052163-85052182 | None:intergenic | 70.0% | |
| TGTCCTCCTTCGGGGGGACG+TGG | - | chr4_1:85052163-85052182 | Msa0580050:intron | 70.0% | |
| GTCCTCCTTCGGGGGGACGT+GGG | - | chr4_1:85052164-85052183 | Msa0580050:intron | 70.0% | |
| TGTTGCCCACGTCCCCCCGA+AGG | + | chr4_1:85052172-85052191 | None:intergenic | 70.0% | |
| GAGGGGAGAACCCTCGCGGA+GGG | - | chr4_1:85052525-85052544 | Msa0580050:CDS | 70.0% | |
| CGTCCCCCCGAAGGAGGACA+AGG | + | chr4_1:85052163-85052182 | None:intergenic | 70.0% | |
| TGTCCTCCTTCGGGGGGACG+TGG | - | chr4_1:85052163-85052182 | Msa0580050:intron | 70.0% | |
| GTCCTCCTTCGGGGGGACGT+GGG | - | chr4_1:85052164-85052183 | Msa0580050:intron | 70.0% | |
| TGTTGCCCACGTCCCCCCGA+AGG | + | chr4_1:85052172-85052191 | None:intergenic | 70.0% | |
| GAGGGGAGAACCCTCGCGGA+GGG | - | chr4_1:85052525-85052544 | Msa0580050:CDS | 70.0% | |
| TGCCCACGTCCCCCCGAAGG+AGG | + | chr4_1:85052169-85052188 | None:intergenic | 75.0% | |
| CGAGGGGAGAACCCTCGCGG+AGG | - | chr4_1:85052524-85052543 | Msa0580050:CDS | 75.0% | |
| GGGAGAACCCTCGCGGAGGG+CGG | - | chr4_1:85052528-85052547 | Msa0580050:CDS | 75.0% | |
| GGAGAACCCTCGCGGAGGGC+GGG | - | chr4_1:85052529-85052548 | Msa0580050:CDS | 75.0% | |
| TTGGCACCCGCCCTCCGCGA+GGG | + | chr4_1:85052538-85052557 | None:intergenic | 75.0% | |
| TGCCCACGTCCCCCCGAAGG+AGG | + | chr4_1:85052169-85052188 | None:intergenic | 75.0% | |
| CGAGGGGAGAACCCTCGCGG+AGG | - | chr4_1:85052524-85052543 | Msa0580050:CDS | 75.0% | |
| GGGAGAACCCTCGCGGAGGG+CGG | - | chr4_1:85052528-85052547 | Msa0580050:CDS | 75.0% | |
| GGAGAACCCTCGCGGAGGGC+GGG | - | chr4_1:85052529-85052548 | Msa0580050:CDS | 75.0% | |
| TTGGCACCCGCCCTCCGCGA+GGG | + | chr4_1:85052538-85052557 | None:intergenic | 75.0% | |
| ! | CTTGGCACCCGCCCTCCGCG+AGG | + | chr4_1:85052539-85052558 | None:intergenic | 80.0% |
| ! | CTCGCGGAGGGCGGGTGCCA+AGG | - | chr4_1:85052537-85052556 | Msa0580050:CDS | 80.0% |
| ! | CTTGGCACCCGCCCTCCGCG+AGG | + | chr4_1:85052539-85052558 | None:intergenic | 80.0% |
| ! | CTCGCGGAGGGCGGGTGCCA+AGG | - | chr4_1:85052537-85052556 | Msa0580050:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 85051314 | 85052576 | 85051314 | ID=Msa0580050;Name=Msa0580050 |
| chr4_1 | mRNA | 85051314 | 85052576 | 85051314 | ID=Msa0580050-mRNA-1;Parent=Msa0580050;Name=Msa0580050-mRNA-1;_AED=0.37;_eAED=0.57;_QI=0|0|0|0.66|1|1|3|0|115 |
| chr4_1 | exon | 85052394 | 85052576 | 85052394 | ID=Msa0580050-mRNA-1:exon:31156;Parent=Msa0580050-mRNA-1 |
| chr4_1 | exon | 85051639 | 85051734 | 85051639 | ID=Msa0580050-mRNA-1:exon:31155;Parent=Msa0580050-mRNA-1 |
| chr4_1 | exon | 85051314 | 85051382 | 85051314 | ID=Msa0580050-mRNA-1:exon:31154;Parent=Msa0580050-mRNA-1 |
| chr4_1 | CDS | 85052394 | 85052576 | 85052394 | ID=Msa0580050-mRNA-1:cds;Parent=Msa0580050-mRNA-1 |
| chr4_1 | CDS | 85051639 | 85051734 | 85051639 | ID=Msa0580050-mRNA-1:cds;Parent=Msa0580050-mRNA-1 |
| chr4_1 | CDS | 85051314 | 85051382 | 85051314 | ID=Msa0580050-mRNA-1:cds;Parent=Msa0580050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
