Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580560 | KEH20675.1 | 93.413 | 167 | 9 | 1 | 1 | 165 | 3 | 169 | 5.25e-96 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580560 | sp|Q700D9|MYBF_ARATH | 64.865 | 74 | 26 | 0 | 87 | 160 | 3 | 76 | 9.61e-29 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580560 | A0A072U4B3 | 93.413 | 167 | 9 | 1 | 1 | 165 | 3 | 169 | 2.51e-96 | 295 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0580560 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580560 | MtrunA17_Chr8g0379121 | 92.683 | 164 | 10 | 1 | 1 | 162 | 3 | 166 | 1.59e-97 | 288 |
| Msa0580560 | MtrunA17_Chr7g0243081 | 55.752 | 113 | 47 | 1 | 54 | 166 | 21 | 130 | 1.55e-38 | 134 |
| Msa0580560 | MtrunA17_Chr2g0320231 | 53.459 | 159 | 51 | 5 | 9 | 162 | 12 | 152 | 5.63e-38 | 133 |
| Msa0580560 | MtrunA17_Chr2g0283951 | 73.750 | 80 | 17 | 1 | 87 | 162 | 69 | 148 | 9.26e-35 | 125 |
| Msa0580560 | MtrunA17_Chr2g0288601 | 78.333 | 60 | 13 | 0 | 99 | 158 | 63 | 122 | 1.35e-31 | 110 |
| Msa0580560 | MtrunA17_Chr1g0162931 | 68.657 | 67 | 21 | 0 | 95 | 161 | 6 | 72 | 3.95e-30 | 110 |
| Msa0580560 | MtrunA17_Chr1g0210911 | 60.000 | 80 | 27 | 1 | 82 | 161 | 2 | 76 | 9.72e-30 | 110 |
| Msa0580560 | MtrunA17_Chr3g0095611 | 55.072 | 69 | 31 | 0 | 92 | 160 | 4 | 72 | 9.07e-25 | 95.5 |
| Msa0580560 | MtrunA17_Chr1g0154261 | 62.857 | 70 | 24 | 1 | 92 | 161 | 113 | 180 | 9.25e-24 | 94.4 |
| Msa0580560 | MtrunA17_Chr6g0479431 | 55.405 | 74 | 19 | 1 | 102 | 161 | 183 | 256 | 3.85e-21 | 88.6 |
| Msa0580560 | MtrunA17_Chr7g0261911 | 68.519 | 54 | 17 | 0 | 108 | 161 | 263 | 316 | 6.44e-21 | 88.6 |
| Msa0580560 | MtrunA17_Chr7g0274471 | 66.667 | 54 | 18 | 0 | 108 | 161 | 219 | 272 | 2.29e-20 | 87.0 |
| Msa0580560 | MtrunA17_Chr1g0190301 | 66.667 | 54 | 18 | 0 | 108 | 161 | 176 | 229 | 2.57e-20 | 86.3 |
| Msa0580560 | MtrunA17_Chr5g0410741 | 66.071 | 56 | 19 | 0 | 106 | 161 | 218 | 273 | 3.66e-20 | 85.9 |
| Msa0580560 | MtrunA17_Chr8g0366281 | 64.286 | 56 | 20 | 0 | 106 | 161 | 172 | 227 | 5.16e-20 | 85.1 |
| Msa0580560 | MtrunA17_Chr3g0109981 | 66.071 | 56 | 19 | 0 | 106 | 161 | 273 | 328 | 6.59e-20 | 85.5 |
| Msa0580560 | MtrunA17_Chr6g0461641 | 59.259 | 54 | 22 | 0 | 108 | 161 | 43 | 96 | 1.33e-18 | 81.6 |
| Msa0580560 | MtrunA17_Chr5g0409731 | 50.000 | 72 | 29 | 1 | 96 | 160 | 7 | 78 | 6.37e-18 | 79.0 |
| Msa0580560 | MtrunA17_Chr2g0321461 | 58.491 | 53 | 22 | 0 | 108 | 160 | 46 | 98 | 6.75e-18 | 79.7 |
| Msa0580560 | MtrunA17_Chr7g0258551 | 57.627 | 59 | 25 | 0 | 103 | 161 | 208 | 266 | 1.35e-17 | 79.0 |
| Msa0580560 | MtrunA17_Chr7g0254981 | 63.462 | 52 | 19 | 0 | 109 | 160 | 52 | 103 | 6.29e-17 | 75.9 |
| Msa0580560 | MtrunA17_Chr1g0197171 | 58.491 | 53 | 22 | 0 | 108 | 160 | 45 | 97 | 8.53e-17 | 75.9 |
| Msa0580560 | MtrunA17_Chr2g0290991 | 58.491 | 53 | 22 | 0 | 108 | 160 | 40 | 92 | 1.30e-16 | 75.5 |
| Msa0580560 | MtrunA17_Chr5g0417521 | 50.943 | 53 | 26 | 0 | 108 | 160 | 16 | 68 | 1.48e-16 | 75.5 |
| Msa0580560 | MtrunA17_Chr1g0175091 | 61.538 | 52 | 20 | 0 | 109 | 160 | 260 | 311 | 1.82e-16 | 75.9 |
| Msa0580560 | MtrunA17_Chr2g0291021 | 63.462 | 52 | 19 | 0 | 109 | 160 | 51 | 102 | 4.73e-16 | 73.9 |
| Msa0580560 | MtrunA17_Chr1g0175081 | 55.769 | 52 | 23 | 0 | 109 | 160 | 24 | 75 | 5.31e-16 | 69.7 |
| Msa0580560 | MtrunA17_Chr8g0356501 | 52.830 | 53 | 25 | 0 | 108 | 160 | 38 | 90 | 2.16e-15 | 72.4 |
| Msa0580560 | MtrunA17_Chr2g0310011 | 52.830 | 53 | 25 | 0 | 108 | 160 | 36 | 88 | 4.52e-15 | 71.6 |
| Msa0580560 | MtrunA17_Chr4g0042451 | 50.943 | 53 | 26 | 0 | 108 | 160 | 18 | 70 | 5.69e-15 | 71.2 |
| Msa0580560 | MtrunA17_Chr7g0258531 | 36.607 | 112 | 67 | 1 | 61 | 168 | 163 | 274 | 3.87e-14 | 68.9 |
| Msa0580560 | MtrunA17_Chr1g0175071 | 54.717 | 53 | 24 | 0 | 109 | 161 | 179 | 231 | 4.05e-14 | 68.6 |
| Msa0580560 | MtrunA17_Chr7g0242521 | 58.182 | 55 | 20 | 1 | 109 | 160 | 15 | 69 | 3.47e-13 | 65.1 |
| Msa0580560 | MtrunA17_Chr4g0009901 | 47.368 | 57 | 29 | 1 | 105 | 161 | 166 | 221 | 1.71e-12 | 63.5 |
| Msa0580560 | MtrunA17_Chr7g0275401 | 31.008 | 129 | 84 | 2 | 40 | 168 | 129 | 252 | 2.81e-12 | 63.2 |
| Msa0580560 | MtrunA17_Chr4g0009991 | 51.020 | 49 | 23 | 1 | 110 | 158 | 70 | 117 | 7.00e-12 | 59.7 |
| Msa0580560 | MtrunA17_Chr2g0304841 | 49.091 | 55 | 27 | 1 | 106 | 160 | 212 | 265 | 1.09e-11 | 62.0 |
| Msa0580560 | MtrunA17_Chr4g0062921 | 32.000 | 125 | 67 | 3 | 52 | 160 | 166 | 288 | 4.18e-11 | 60.5 |
| Msa0580560 | MtrunA17_Chr4g0031961 | 48.438 | 64 | 32 | 1 | 97 | 160 | 121 | 183 | 4.91e-11 | 59.7 |
| Msa0580560 | MtrunA17_Chr4g0045361 | 51.020 | 49 | 24 | 0 | 112 | 160 | 279 | 327 | 6.04e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580560 | AT2G42660.1 | 75.758 | 66 | 16 | 0 | 97 | 162 | 40 | 105 | 4.81e-33 | 118 |
| Msa0580560 | AT2G38300.1 | 75.000 | 68 | 17 | 0 | 95 | 162 | 42 | 109 | 3.29e-32 | 118 |
| Msa0580560 | AT2G40260.1 | 64.835 | 91 | 27 | 2 | 77 | 162 | 47 | 137 | 1.21e-31 | 117 |
| Msa0580560 | AT2G02060.2 | 62.963 | 81 | 30 | 0 | 80 | 160 | 2 | 82 | 2.39e-31 | 114 |
| Msa0580560 | AT2G02060.1 | 62.963 | 81 | 30 | 0 | 80 | 160 | 2 | 82 | 2.39e-31 | 114 |
| Msa0580560 | AT1G14600.1 | 64.865 | 74 | 26 | 0 | 87 | 160 | 3 | 76 | 9.77e-30 | 109 |
| Msa0580560 | AT4G04605.1 | 74.194 | 62 | 16 | 0 | 99 | 160 | 6 | 67 | 1.83e-29 | 108 |
| Msa0580560 | AT5G42630.2 | 57.895 | 76 | 26 | 2 | 86 | 161 | 90 | 159 | 5.72e-22 | 88.6 |
| Msa0580560 | AT5G42630.1 | 57.895 | 76 | 26 | 2 | 86 | 161 | 90 | 159 | 8.09e-22 | 89.4 |
| Msa0580560 | AT4G04580.1 | 57.812 | 64 | 27 | 0 | 99 | 162 | 6 | 69 | 4.22e-21 | 85.1 |
| Msa0580560 | AT4G04555.1 | 57.812 | 64 | 27 | 0 | 99 | 162 | 6 | 69 | 8.83e-21 | 82.4 |
| Msa0580560 | AT1G32240.2 | 66.071 | 56 | 19 | 0 | 106 | 161 | 212 | 267 | 4.13e-20 | 85.9 |
| Msa0580560 | AT1G32240.1 | 66.071 | 56 | 19 | 0 | 106 | 161 | 212 | 267 | 4.37e-20 | 86.3 |
| Msa0580560 | AT4G17695.1 | 64.286 | 56 | 20 | 0 | 106 | 161 | 163 | 218 | 5.69e-20 | 85.1 |
| Msa0580560 | AT5G16560.1 | 66.071 | 56 | 19 | 0 | 106 | 161 | 218 | 273 | 6.08e-20 | 85.9 |
| Msa0580560 | AT5G29000.1 | 66.038 | 53 | 18 | 0 | 109 | 161 | 190 | 242 | 4.68e-19 | 83.2 |
| Msa0580560 | AT5G29000.3 | 66.038 | 53 | 18 | 0 | 109 | 161 | 190 | 242 | 4.68e-19 | 83.2 |
| Msa0580560 | AT3G04450.3 | 62.264 | 53 | 20 | 0 | 109 | 161 | 240 | 292 | 6.15e-19 | 82.0 |
| Msa0580560 | AT5G29000.2 | 66.038 | 53 | 18 | 0 | 109 | 161 | 233 | 285 | 6.35e-19 | 83.2 |
| Msa0580560 | AT3G04450.4 | 62.264 | 53 | 20 | 0 | 109 | 161 | 200 | 252 | 6.47e-19 | 82.8 |
| Msa0580560 | AT3G04450.2 | 62.264 | 53 | 20 | 0 | 109 | 161 | 200 | 252 | 6.47e-19 | 82.8 |
| Msa0580560 | AT5G29000.4 | 66.038 | 53 | 18 | 0 | 109 | 161 | 233 | 285 | 7.09e-19 | 82.0 |
| Msa0580560 | AT3G04450.1 | 62.264 | 53 | 20 | 0 | 109 | 161 | 240 | 292 | 7.12e-19 | 83.2 |
| Msa0580560 | AT4G28610.1 | 66.038 | 53 | 18 | 0 | 109 | 161 | 227 | 279 | 7.30e-19 | 82.8 |
| Msa0580560 | AT5G45580.2 | 54.688 | 64 | 29 | 0 | 97 | 160 | 13 | 76 | 1.34e-18 | 80.9 |
| Msa0580560 | AT5G45580.1 | 56.897 | 58 | 25 | 0 | 103 | 160 | 3 | 60 | 5.57e-18 | 79.0 |
| Msa0580560 | AT3G13040.3 | 65.385 | 52 | 18 | 0 | 109 | 160 | 243 | 294 | 1.51e-17 | 79.3 |
| Msa0580560 | AT3G13040.1 | 65.385 | 52 | 18 | 0 | 109 | 160 | 243 | 294 | 1.51e-17 | 79.3 |
| Msa0580560 | AT3G13040.2 | 65.385 | 52 | 18 | 0 | 109 | 160 | 243 | 294 | 1.51e-17 | 79.3 |
| Msa0580560 | AT3G04030.1 | 54.717 | 53 | 24 | 0 | 108 | 160 | 46 | 98 | 2.69e-17 | 78.2 |
| Msa0580560 | AT3G04030.3 | 54.717 | 53 | 24 | 0 | 108 | 160 | 46 | 98 | 3.20e-17 | 78.2 |
| Msa0580560 | AT5G18240.2 | 54.717 | 53 | 24 | 0 | 108 | 160 | 46 | 98 | 6.42e-17 | 77.4 |
| Msa0580560 | AT5G18240.3 | 54.717 | 53 | 24 | 0 | 108 | 160 | 46 | 98 | 6.42e-17 | 77.4 |
| Msa0580560 | AT5G18240.5 | 54.717 | 53 | 24 | 0 | 108 | 160 | 46 | 98 | 7.26e-17 | 77.0 |
| Msa0580560 | AT5G18240.1 | 54.717 | 53 | 24 | 0 | 108 | 160 | 46 | 98 | 7.46e-17 | 77.0 |
| Msa0580560 | AT5G18240.4 | 54.717 | 53 | 24 | 0 | 108 | 160 | 46 | 98 | 7.46e-17 | 77.0 |
| Msa0580560 | AT2G01060.1 | 63.462 | 52 | 19 | 0 | 109 | 160 | 17 | 68 | 3.05e-16 | 74.7 |
| Msa0580560 | AT1G69580.1 | 54.717 | 53 | 24 | 0 | 108 | 160 | 35 | 87 | 3.19e-16 | 75.1 |
| Msa0580560 | AT1G69580.2 | 54.717 | 53 | 24 | 0 | 108 | 160 | 35 | 87 | 3.37e-16 | 75.1 |
| Msa0580560 | AT3G12730.1 | 54.717 | 53 | 24 | 0 | 108 | 160 | 24 | 76 | 3.44e-16 | 73.6 |
| Msa0580560 | AT2G20400.2 | 55.932 | 59 | 26 | 0 | 109 | 167 | 233 | 291 | 5.98e-16 | 74.7 |
| Msa0580560 | AT2G20400.1 | 55.932 | 59 | 26 | 0 | 109 | 167 | 233 | 291 | 6.51e-16 | 74.3 |
| Msa0580560 | AT4G13640.1 | 52.830 | 53 | 25 | 0 | 108 | 160 | 38 | 90 | 1.38e-15 | 72.8 |
| Msa0580560 | AT3G24120.1 | 52.830 | 53 | 25 | 0 | 108 | 160 | 42 | 94 | 1.42e-15 | 72.8 |
| Msa0580560 | AT3G24120.2 | 52.830 | 53 | 25 | 0 | 108 | 160 | 42 | 94 | 1.49e-15 | 72.8 |
| Msa0580560 | AT4G13640.2 | 52.830 | 53 | 25 | 0 | 108 | 160 | 38 | 90 | 1.49e-15 | 72.8 |
| Msa0580560 | AT1G79430.2 | 52.830 | 53 | 25 | 0 | 108 | 160 | 35 | 87 | 3.55e-15 | 72.4 |
| Msa0580560 | AT5G06800.3 | 57.692 | 52 | 22 | 0 | 109 | 160 | 194 | 245 | 1.04e-14 | 70.1 |
| Msa0580560 | AT3G04030.2 | 52.830 | 53 | 24 | 1 | 108 | 160 | 46 | 97 | 1.14e-14 | 70.9 |
| Msa0580560 | AT2G06020.1 | 35.780 | 109 | 59 | 1 | 52 | 160 | 42 | 139 | 1.53e-14 | 70.1 |
| Msa0580560 | AT5G06800.2 | 57.692 | 52 | 22 | 0 | 109 | 160 | 194 | 245 | 2.16e-14 | 70.1 |
| Msa0580560 | AT5G06800.1 | 57.692 | 52 | 22 | 0 | 109 | 160 | 194 | 245 | 2.17e-14 | 70.1 |
| Msa0580560 | AT3G62670.1 | 50.000 | 60 | 26 | 1 | 105 | 160 | 209 | 268 | 3.09e-13 | 67.0 |
| Msa0580560 | AT5G59570.2 | 53.571 | 56 | 25 | 1 | 105 | 160 | 139 | 193 | 5.43e-12 | 62.8 |
| Msa0580560 | AT5G59570.1 | 53.571 | 56 | 25 | 1 | 105 | 160 | 139 | 193 | 5.43e-12 | 62.8 |
| Msa0580560 | AT1G25550.2 | 55.102 | 49 | 22 | 0 | 112 | 160 | 214 | 262 | 1.90e-11 | 61.2 |
| Msa0580560 | AT3G46640.2 | 52.727 | 55 | 25 | 1 | 106 | 160 | 143 | 196 | 3.09e-11 | 60.8 |
| Msa0580560 | AT3G46640.1 | 52.727 | 55 | 25 | 1 | 106 | 160 | 143 | 196 | 3.09e-11 | 60.8 |
| Msa0580560 | AT1G25550.1 | 53.061 | 49 | 23 | 0 | 112 | 160 | 214 | 262 | 3.10e-11 | 60.8 |
| Msa0580560 | AT3G46640.3 | 52.727 | 55 | 25 | 1 | 106 | 160 | 143 | 196 | 4.27e-11 | 60.5 |
| Msa0580560 | AT2G03500.1 | 32.117 | 137 | 65 | 3 | 36 | 160 | 166 | 286 | 5.29e-11 | 60.5 |
Find 32 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAAATATATTAAAATAAA+AGG | 0.156687 | 4_1:-85716973 | Msa0580560:three_prime_UTR |
| CATCAGTTGAAGCACCAATT+TGG | 0.203737 | 4_1:+85717142 | None:intergenic |
| ATCAGTTGAAGCACCAATTT+GGG | 0.338016 | 4_1:+85717143 | None:intergenic |
| TGCAGGAGCAACACCCAAAT+TGG | 0.368712 | 4_1:-85717156 | Msa0580560:intron |
| CATGAGAATGAGAGGAGTAC+TGG | 0.386029 | 4_1:-85717659 | Msa0580560:CDS |
| TAAAATATATTAAAATAAAA+GGG | 0.399007 | 4_1:-85716972 | Msa0580560:three_prime_UTR |
| TCATGTCAAGAGTCACTTGC+AGG | 0.410009 | 4_1:-85717096 | Msa0580560:CDS |
| TATATATATACTTACTCTCT+TGG | 0.424725 | 4_1:+85717294 | None:intergenic |
| TCAAATGAAAGAAGAAGAAA+TGG | 0.432967 | 4_1:-85717410 | Msa0580560:CDS |
| ATAAAAGAGTGATGAAGATC+AGG | 0.470459 | 4_1:+85717341 | None:intergenic |
| GATCAAAGATGCCTAGGCTT+AGG | 0.490445 | 4_1:-85717370 | Msa0580560:CDS |
| ATGCATGCTGTTGAAAGGCT+TGG | 0.493618 | 4_1:-85717320 | Msa0580560:CDS |
| ACATGCTGAGGACACTTCAA+TGG | 0.509382 | 4_1:-85717624 | Msa0580560:CDS |
| CAAAGATGCCTAGGCTTAGG+TGG | 0.512420 | 4_1:-85717367 | Msa0580560:CDS |
| GGTATATAAGACAAAATTTG+AGG | 0.526211 | 4_1:-85717075 | Msa0580560:CDS |
| AGCTTCTTCATTCAAATCAA+AGG | 0.526882 | 4_1:+85717577 | None:intergenic |
| ATGAGAATGAGAGGAGTACT+GGG | 0.527704 | 4_1:-85717658 | Msa0580560:CDS |
| AAAATATATTAAAATAAAAG+GGG | 0.549978 | 4_1:-85716971 | Msa0580560:three_prime_UTR |
| ATGAGAAACATGAGAATGAG+AGG | 0.550261 | 4_1:-85717667 | Msa0580560:CDS |
| ATGTTAGATCAAAGATGCCT+AGG | 0.555843 | 4_1:-85717376 | Msa0580560:CDS |
| TTAGTAAAGGATGATGATGA+AGG | 0.558622 | 4_1:-85717464 | Msa0580560:CDS |
| CATGCTGTTGAAAGGCTTGG+AGG | 0.559982 | 4_1:-85717317 | Msa0580560:CDS |
| AAATATATTAAAATAAAAGG+GGG | 0.567969 | 4_1:-85716970 | Msa0580560:three_prime_UTR |
| TTGTTAATGAATATGTCAGA+TGG | 0.574290 | 4_1:-85717692 | None:intergenic |
| TCAGGAGTCCACCTAAGCCT+AGG | 0.589432 | 4_1:+85717359 | None:intergenic |
| TGTGATCATGAATTAGTGAA+TGG | 0.597628 | 4_1:-85717509 | Msa0580560:CDS |
| TGATGATGAGAAATTAGTAA+AGG | 0.628164 | 4_1:-85717477 | Msa0580560:CDS |
| GAAGAGTGAAGAACATGCTG+AGG | 0.635213 | 4_1:-85717636 | Msa0580560:CDS |
| AATATATTAAAATAAAAGGG+GGG | 0.644049 | 4_1:-85716969 | Msa0580560:three_prime_UTR |
| CTTCAACTGATGAATGTGAG+AGG | 0.660411 | 4_1:-85717131 | Msa0580560:CDS |
| TGATCAAGATGTTAACAATG+AGG | 0.669481 | 4_1:-85717546 | Msa0580560:CDS |
| TAACAATGAGGAGAATGATG+AGG | 0.684647 | 4_1:-85717534 | Msa0580560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATATTAAAATAAAA+GGG | - | chr4_1:85717634-85717653 | Msa0580560:CDS | 0.0% |
| !! | TAAAATATATTAAAATAAAA+GGG | - | chr4_1:85717634-85717653 | Msa0580560:CDS | 0.0% |
| !! | AAATATATTAAAATAAAAGG+GGG | - | chr4_1:85717636-85717655 | Msa0580560:CDS | 10.0% |
| !! | AAATATATTAAAATAAAAGG+GGG | - | chr4_1:85717636-85717655 | Msa0580560:CDS | 10.0% |
| !! | AATTGTGAAATTGTTTAATT+TGG | - | chr4_1:85717378-85717397 | Msa0580560:CDS | 15.0% |
| !! | AATATATTAAAATAAAAGGG+GGG | - | chr4_1:85717637-85717656 | Msa0580560:CDS | 15.0% |
| !! | AATTGTGAAATTGTTTAATT+TGG | - | chr4_1:85717378-85717397 | Msa0580560:CDS | 15.0% |
| !! | AATATATTAAAATAAAAGGG+GGG | - | chr4_1:85717637-85717656 | Msa0580560:CDS | 15.0% |
| !! | TATATATATACTTACTCTCT+TGG | + | chr4_1:85717315-85717334 | None:intergenic | 20.0% |
| !! | AACAATTTCACAATTATCTA+GGG | + | chr4_1:85717373-85717392 | None:intergenic | 20.0% |
| !! | AAACAATTTCACAATTATCT+AGG | + | chr4_1:85717374-85717393 | None:intergenic | 20.0% |
| !! | TATATATATACTTACTCTCT+TGG | + | chr4_1:85717315-85717334 | None:intergenic | 20.0% |
| !! | AACAATTTCACAATTATCTA+GGG | + | chr4_1:85717373-85717392 | None:intergenic | 20.0% |
| !! | AAACAATTTCACAATTATCT+AGG | + | chr4_1:85717374-85717393 | None:intergenic | 20.0% |
| !! | TGATGATGAGAAATTAGTAA+AGG | - | chr4_1:85717129-85717148 | Msa0580560:CDS | 25.0% |
| ! | TCAAATGAAAGAAGAAGAAA+TGG | - | chr4_1:85717196-85717215 | Msa0580560:intron | 25.0% |
| ! | GTTGTGTTCATTATTAATGT+TGG | - | chr4_1:85717420-85717439 | Msa0580560:CDS | 25.0% |
| ! | GGTATATAAGACAAAATTTG+AGG | - | chr4_1:85717531-85717550 | Msa0580560:CDS | 25.0% |
| !! | TGATGATGAGAAATTAGTAA+AGG | - | chr4_1:85717129-85717148 | Msa0580560:CDS | 25.0% |
| ! | TCAAATGAAAGAAGAAGAAA+TGG | - | chr4_1:85717196-85717215 | Msa0580560:intron | 25.0% |
| ! | GTTGTGTTCATTATTAATGT+TGG | - | chr4_1:85717420-85717439 | Msa0580560:CDS | 25.0% |
| ! | GGTATATAAGACAAAATTTG+AGG | - | chr4_1:85717531-85717550 | Msa0580560:CDS | 25.0% |
| AGCTTCTTCATTCAAATCAA+AGG | + | chr4_1:85717032-85717051 | None:intergenic | 30.0% | |
| TGATCAAGATGTTAACAATG+AGG | - | chr4_1:85717060-85717079 | Msa0580560:CDS | 30.0% | |
| TGTGATCATGAATTAGTGAA+TGG | - | chr4_1:85717097-85717116 | Msa0580560:CDS | 30.0% | |
| ! | TTAGTAAAGGATGATGATGA+AGG | - | chr4_1:85717142-85717161 | Msa0580560:CDS | 30.0% |
| AGTTCAACAAAAAGAAGTAG+TGG | - | chr4_1:85717172-85717191 | Msa0580560:intron | 30.0% | |
| ATAAAAGAGTGATGAAGATC+AGG | + | chr4_1:85717268-85717287 | None:intergenic | 30.0% | |
| GTGTTCATTATTAATGTTGG+TGG | - | chr4_1:85717423-85717442 | Msa0580560:CDS | 30.0% | |
| ACGTGAAACAAAAATATCAG+TGG | + | chr4_1:85717615-85717634 | None:intergenic | 30.0% | |
| AGCTTCTTCATTCAAATCAA+AGG | + | chr4_1:85717032-85717051 | None:intergenic | 30.0% | |
| TGATCAAGATGTTAACAATG+AGG | - | chr4_1:85717060-85717079 | Msa0580560:CDS | 30.0% | |
| TGTGATCATGAATTAGTGAA+TGG | - | chr4_1:85717097-85717116 | Msa0580560:CDS | 30.0% | |
| ! | TTAGTAAAGGATGATGATGA+AGG | - | chr4_1:85717142-85717161 | Msa0580560:CDS | 30.0% |
| AGTTCAACAAAAAGAAGTAG+TGG | - | chr4_1:85717172-85717191 | Msa0580560:intron | 30.0% | |
| ATAAAAGAGTGATGAAGATC+AGG | + | chr4_1:85717268-85717287 | None:intergenic | 30.0% | |
| GTGTTCATTATTAATGTTGG+TGG | - | chr4_1:85717423-85717442 | Msa0580560:CDS | 30.0% | |
| ACGTGAAACAAAAATATCAG+TGG | + | chr4_1:85717615-85717634 | None:intergenic | 30.0% | |
| ATGAGAAACATGAGAATGAG+AGG | - | chr4_1:85716939-85716958 | Msa0580560:three_prime_UTR | 35.0% | |
| TAACAATGAGGAGAATGATG+AGG | - | chr4_1:85717072-85717091 | Msa0580560:CDS | 35.0% | |
| ATGTTAGATCAAAGATGCCT+AGG | - | chr4_1:85717230-85717249 | Msa0580560:intron | 35.0% | |
| ! | CTTTTATGCATGCTGTTGAA+AGG | - | chr4_1:85717281-85717300 | Msa0580560:intron | 35.0% |
| ! | ATCAGTTGAAGCACCAATTT+GGG | + | chr4_1:85717466-85717485 | None:intergenic | 35.0% |
| ATGAGAAACATGAGAATGAG+AGG | - | chr4_1:85716939-85716958 | Msa0580560:three_prime_UTR | 35.0% | |
| TAACAATGAGGAGAATGATG+AGG | - | chr4_1:85717072-85717091 | Msa0580560:CDS | 35.0% | |
| ATGTTAGATCAAAGATGCCT+AGG | - | chr4_1:85717230-85717249 | Msa0580560:intron | 35.0% | |
| ! | CTTTTATGCATGCTGTTGAA+AGG | - | chr4_1:85717281-85717300 | Msa0580560:intron | 35.0% |
| ! | ATCAGTTGAAGCACCAATTT+GGG | + | chr4_1:85717466-85717485 | None:intergenic | 35.0% |
| !! | ATGAGAATGAGAGGAGTACT+GGG | - | chr4_1:85716948-85716967 | Msa0580560:three_prime_UTR | 40.0% |
| ! | CATCAGTTGAAGCACCAATT+TGG | + | chr4_1:85717467-85717486 | None:intergenic | 40.0% |
| CTTCAACTGATGAATGTGAG+AGG | - | chr4_1:85717475-85717494 | Msa0580560:CDS | 40.0% | |
| !! | ATGAGAATGAGAGGAGTACT+GGG | - | chr4_1:85716948-85716967 | Msa0580560:three_prime_UTR | 40.0% |
| ! | CATCAGTTGAAGCACCAATT+TGG | + | chr4_1:85717467-85717486 | None:intergenic | 40.0% |
| CTTCAACTGATGAATGTGAG+AGG | - | chr4_1:85717475-85717494 | Msa0580560:CDS | 40.0% | |
| ! | CATGAGAATGAGAGGAGTAC+TGG | - | chr4_1:85716947-85716966 | Msa0580560:three_prime_UTR | 45.0% |
| GAAGAGTGAAGAACATGCTG+AGG | - | chr4_1:85716970-85716989 | Msa0580560:three_prime_UTR | 45.0% | |
| ACATGCTGAGGACACTTCAA+TGG | - | chr4_1:85716982-85717001 | Msa0580560:three_prime_UTR | 45.0% | |
| GATCAAAGATGCCTAGGCTT+AGG | - | chr4_1:85717236-85717255 | Msa0580560:intron | 45.0% | |
| ATGCATGCTGTTGAAAGGCT+TGG | - | chr4_1:85717286-85717305 | Msa0580560:intron | 45.0% | |
| !! | TTAATGTTGGTGGTGCATGC+AGG | - | chr4_1:85717433-85717452 | Msa0580560:CDS | 45.0% |
| TCATGTCAAGAGTCACTTGC+AGG | - | chr4_1:85717510-85717529 | Msa0580560:CDS | 45.0% | |
| ! | CATGAGAATGAGAGGAGTAC+TGG | - | chr4_1:85716947-85716966 | Msa0580560:three_prime_UTR | 45.0% |
| GAAGAGTGAAGAACATGCTG+AGG | - | chr4_1:85716970-85716989 | Msa0580560:three_prime_UTR | 45.0% | |
| ACATGCTGAGGACACTTCAA+TGG | - | chr4_1:85716982-85717001 | Msa0580560:three_prime_UTR | 45.0% | |
| GATCAAAGATGCCTAGGCTT+AGG | - | chr4_1:85717236-85717255 | Msa0580560:intron | 45.0% | |
| ATGCATGCTGTTGAAAGGCT+TGG | - | chr4_1:85717286-85717305 | Msa0580560:intron | 45.0% | |
| !! | TTAATGTTGGTGGTGCATGC+AGG | - | chr4_1:85717433-85717452 | Msa0580560:CDS | 45.0% |
| TCATGTCAAGAGTCACTTGC+AGG | - | chr4_1:85717510-85717529 | Msa0580560:CDS | 45.0% | |
| !! | GTAAAATATATTAAAATAAA+AGG | - | chr4_1:85717633-85717652 | Msa0580560:CDS | 5.0% |
| !! | AAAATATATTAAAATAAAAG+GGG | - | chr4_1:85717635-85717654 | Msa0580560:CDS | 5.0% |
| !! | GTAAAATATATTAAAATAAA+AGG | - | chr4_1:85717633-85717652 | Msa0580560:CDS | 5.0% |
| !! | AAAATATATTAAAATAAAAG+GGG | - | chr4_1:85717635-85717654 | Msa0580560:CDS | 5.0% |
| CAAAGATGCCTAGGCTTAGG+TGG | - | chr4_1:85717239-85717258 | Msa0580560:intron | 50.0% | |
| CATGCTGTTGAAAGGCTTGG+AGG | - | chr4_1:85717289-85717308 | Msa0580560:intron | 50.0% | |
| TGCAGGAGCAACACCCAAAT+TGG | - | chr4_1:85717450-85717469 | Msa0580560:CDS | 50.0% | |
| CAAAGATGCCTAGGCTTAGG+TGG | - | chr4_1:85717239-85717258 | Msa0580560:intron | 50.0% | |
| CATGCTGTTGAAAGGCTTGG+AGG | - | chr4_1:85717289-85717308 | Msa0580560:intron | 50.0% | |
| TGCAGGAGCAACACCCAAAT+TGG | - | chr4_1:85717450-85717469 | Msa0580560:CDS | 50.0% | |
| TCAGGAGTCCACCTAAGCCT+AGG | + | chr4_1:85717250-85717269 | None:intergenic | 55.0% | |
| TCAGGAGTCCACCTAAGCCT+AGG | + | chr4_1:85717250-85717269 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 85716926 | 85717702 | 85716926 | ID=Msa0580560;Name=Msa0580560 |
| chr4_1 | mRNA | 85716926 | 85717702 | 85716926 | ID=Msa0580560-mRNA-1;Parent=Msa0580560;Name=Msa0580560-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|2|129|170 |
| chr4_1 | exon | 85716926 | 85717173 | 85716926 | ID=Msa0580560-mRNA-1:exon:31540;Parent=Msa0580560-mRNA-1 |
| chr4_1 | exon | 85717309 | 85717702 | 85717309 | ID=Msa0580560-mRNA-1:exon:31539;Parent=Msa0580560-mRNA-1 |
| chr4_1 | CDS | 85717309 | 85717702 | 85717309 | ID=Msa0580560-mRNA-1:cds;Parent=Msa0580560-mRNA-1 |
| chr4_1 | CDS | 85717055 | 85717173 | 85717055 | ID=Msa0580560-mRNA-1:cds;Parent=Msa0580560-mRNA-1 |
| chr4_1 | three_prime_UTR | 85716926 | 85717054 | 85716926 | ID=Msa0580560-mRNA-1:three_prime_utr;Parent=Msa0580560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
