Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583000 | XP_015387578.1 | 89.474 | 133 | 7 | 1 | 1 | 126 | 1 | 133 | 2.41e-78 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583000 | sp|Q9LJD8|M3KE1_ARATH | 87.500 | 128 | 9 | 1 | 1 | 121 | 1 | 128 | 5.41e-68 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583000 | MtrunA17_Chr4g0038501 | 94.531 | 128 | 0 | 1 | 1 | 121 | 1 | 128 | 2.60e-75 | 242 |
| Msa0583000 | MtrunA17_Chr4g0038091 | 92.188 | 128 | 3 | 1 | 1 | 121 | 1 | 128 | 6.64e-74 | 238 |
| Msa0583000 | MtrunA17_Chr1g0205931 | 38.793 | 116 | 56 | 3 | 19 | 121 | 54 | 167 | 1.37e-22 | 91.7 |
| Msa0583000 | MtrunA17_Chr7g0272841 | 33.621 | 116 | 62 | 2 | 19 | 121 | 67 | 180 | 1.45e-19 | 83.2 |
| Msa0583000 | MtrunA17_Chr8g0384301 | 34.646 | 127 | 71 | 3 | 5 | 121 | 284 | 408 | 7.03e-17 | 75.5 |
| Msa0583000 | MtrunA17_Chr5g0419441 | 38.393 | 112 | 56 | 3 | 19 | 123 | 238 | 343 | 6.52e-16 | 72.8 |
| Msa0583000 | MtrunA17_Chr1g0202831 | 32.308 | 130 | 66 | 4 | 2 | 121 | 403 | 520 | 1.66e-13 | 65.9 |
| Msa0583000 | MtrunA17_Chr5g0405421 | 28.682 | 129 | 81 | 3 | 10 | 128 | 89 | 216 | 5.49e-13 | 64.3 |
| Msa0583000 | MtrunA17_Chr5g0424581 | 33.028 | 109 | 59 | 4 | 23 | 121 | 128 | 232 | 8.38e-13 | 63.5 |
| Msa0583000 | MtrunA17_Chr5g0424651 | 33.028 | 109 | 59 | 4 | 23 | 121 | 324 | 428 | 9.16e-13 | 63.5 |
| Msa0583000 | MtrunA17_Chr5g0424501 | 31.667 | 120 | 68 | 4 | 12 | 121 | 184 | 299 | 1.14e-12 | 63.5 |
| Msa0583000 | MtrunA17_Chr3g0130151 | 33.613 | 119 | 67 | 3 | 13 | 121 | 237 | 353 | 1.59e-12 | 63.2 |
| Msa0583000 | MtrunA17_Chr8g0386981 | 30.000 | 120 | 70 | 3 | 13 | 121 | 401 | 517 | 6.52e-12 | 61.2 |
| Msa0583000 | MtrunA17_Chr8g0364671 | 33.884 | 121 | 68 | 5 | 3 | 113 | 44 | 162 | 6.96e-12 | 60.8 |
| Msa0583000 | MtrunA17_Chr2g0286501 | 30.275 | 109 | 74 | 1 | 2 | 108 | 31 | 139 | 8.00e-12 | 61.2 |
| Msa0583000 | MtrunA17_Chr1g0205421 | 31.250 | 96 | 58 | 1 | 14 | 101 | 6 | 101 | 3.90e-11 | 58.9 |
| Msa0583000 | MtrunA17_Chr3g0114511 | 31.522 | 92 | 55 | 1 | 14 | 97 | 26 | 117 | 3.97e-11 | 58.9 |
| Msa0583000 | MtrunA17_Chr4g0051191 | 33.645 | 107 | 56 | 3 | 26 | 121 | 169 | 271 | 8.73e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583000 | AT3G13530.1 | 87.500 | 128 | 9 | 1 | 1 | 121 | 1 | 128 | 5.50e-69 | 224 |
| Msa0583000 | AT3G07980.2 | 86.719 | 128 | 10 | 1 | 1 | 121 | 1 | 128 | 3.07e-68 | 222 |
| Msa0583000 | AT3G07980.1 | 86.719 | 128 | 10 | 1 | 1 | 121 | 1 | 128 | 3.41e-68 | 222 |
| Msa0583000 | AT1G09000.1 | 40.179 | 112 | 52 | 3 | 23 | 121 | 72 | 181 | 3.30e-22 | 91.3 |
| Msa0583000 | AT1G09000.2 | 40.179 | 112 | 52 | 3 | 23 | 121 | 72 | 181 | 3.88e-22 | 90.9 |
| Msa0583000 | AT1G54960.1 | 37.931 | 116 | 57 | 3 | 19 | 121 | 67 | 180 | 3.68e-21 | 88.2 |
| Msa0583000 | AT1G54960.2 | 37.931 | 116 | 57 | 3 | 19 | 121 | 67 | 180 | 3.68e-21 | 88.2 |
| Msa0583000 | AT3G06030.1 | 35.345 | 116 | 60 | 2 | 19 | 121 | 67 | 180 | 5.53e-21 | 87.8 |
| Msa0583000 | AT1G69220.1 | 35.385 | 130 | 70 | 4 | 1 | 123 | 231 | 353 | 9.33e-17 | 75.5 |
| Msa0583000 | AT4G12020.1 | 36.607 | 112 | 57 | 4 | 20 | 121 | 1626 | 1733 | 4.22e-14 | 68.2 |
| Msa0583000 | AT4G12020.9 | 36.607 | 112 | 57 | 4 | 20 | 121 | 1626 | 1733 | 4.22e-14 | 68.2 |
| Msa0583000 | AT4G12020.5 | 36.607 | 112 | 57 | 4 | 20 | 121 | 1551 | 1658 | 4.22e-14 | 68.2 |
| Msa0583000 | AT4G12020.3 | 36.607 | 112 | 57 | 4 | 20 | 121 | 1626 | 1733 | 4.27e-14 | 68.2 |
| Msa0583000 | AT4G12020.2 | 36.607 | 112 | 57 | 4 | 20 | 121 | 1626 | 1733 | 4.40e-14 | 68.2 |
| Msa0583000 | AT4G12020.7 | 36.607 | 112 | 57 | 4 | 20 | 121 | 1618 | 1725 | 4.47e-14 | 68.2 |
| Msa0583000 | AT4G12020.10 | 36.607 | 112 | 57 | 4 | 20 | 121 | 1618 | 1725 | 4.48e-14 | 68.2 |
| Msa0583000 | AT4G12020.4 | 36.607 | 112 | 57 | 4 | 20 | 121 | 1618 | 1725 | 4.48e-14 | 68.2 |
| Msa0583000 | AT4G12020.6 | 36.607 | 112 | 57 | 4 | 20 | 121 | 1618 | 1725 | 4.56e-14 | 67.8 |
| Msa0583000 | AT4G12020.8 | 36.607 | 112 | 57 | 4 | 20 | 121 | 1618 | 1725 | 4.56e-14 | 67.8 |
| Msa0583000 | AT1G69220.2 | 34.959 | 123 | 66 | 4 | 8 | 123 | 211 | 326 | 5.91e-14 | 67.4 |
| Msa0583000 | AT1G63700.1 | 31.579 | 114 | 66 | 3 | 18 | 121 | 398 | 509 | 1.75e-13 | 66.2 |
| Msa0583000 | AT1G63700.2 | 31.579 | 114 | 66 | 3 | 18 | 121 | 398 | 509 | 1.75e-13 | 66.2 |
| Msa0583000 | AT1G53570.6 | 32.000 | 125 | 73 | 3 | 7 | 121 | 201 | 323 | 2.66e-13 | 65.5 |
| Msa0583000 | AT1G53570.7 | 32.000 | 125 | 73 | 3 | 7 | 121 | 201 | 323 | 2.66e-13 | 65.5 |
| Msa0583000 | AT1G53570.5 | 32.000 | 125 | 73 | 3 | 7 | 121 | 201 | 323 | 2.71e-13 | 65.5 |
| Msa0583000 | AT1G53570.4 | 32.000 | 125 | 73 | 3 | 7 | 121 | 201 | 323 | 2.72e-13 | 65.5 |
| Msa0583000 | AT1G53570.2 | 32.000 | 125 | 73 | 3 | 7 | 121 | 201 | 323 | 2.72e-13 | 65.5 |
| Msa0583000 | AT1G53570.3 | 32.000 | 125 | 73 | 3 | 7 | 121 | 201 | 323 | 2.72e-13 | 65.5 |
| Msa0583000 | AT1G53570.1 | 32.000 | 125 | 73 | 3 | 7 | 121 | 201 | 323 | 2.72e-13 | 65.5 |
| Msa0583000 | AT4G08500.1 | 35.780 | 109 | 56 | 4 | 23 | 121 | 336 | 440 | 7.60e-13 | 64.3 |
| Msa0583000 | AT3G53930.1 | 25.781 | 128 | 86 | 2 | 1 | 121 | 1 | 126 | 4.87e-12 | 62.0 |
| Msa0583000 | AT3G53930.2 | 25.781 | 128 | 86 | 2 | 1 | 121 | 1 | 126 | 4.88e-12 | 62.0 |
| Msa0583000 | AT2G17890.1 | 27.132 | 129 | 83 | 3 | 10 | 128 | 98 | 225 | 6.66e-12 | 61.6 |
| Msa0583000 | AT4G36070.1 | 26.562 | 128 | 85 | 2 | 10 | 128 | 61 | 188 | 1.06e-11 | 61.2 |
| Msa0583000 | AT4G36070.2 | 26.562 | 128 | 85 | 2 | 10 | 128 | 61 | 188 | 1.07e-11 | 61.2 |
| Msa0583000 | AT4G08480.1 | 31.624 | 117 | 66 | 4 | 15 | 121 | 496 | 608 | 1.15e-11 | 60.8 |
| Msa0583000 | AT4G08470.2 | 33.036 | 112 | 61 | 4 | 20 | 121 | 303 | 410 | 1.45e-11 | 60.5 |
| Msa0583000 | AT4G08470.1 | 33.036 | 112 | 61 | 4 | 20 | 121 | 303 | 410 | 1.48e-11 | 60.5 |
| Msa0583000 | AT2G25090.1 | 28.814 | 118 | 73 | 2 | 13 | 121 | 8 | 123 | 3.51e-11 | 59.7 |
| Msa0583000 | AT5G66850.2 | 33.945 | 109 | 61 | 3 | 16 | 114 | 342 | 449 | 3.78e-11 | 59.7 |
| Msa0583000 | AT5G66850.1 | 33.945 | 109 | 61 | 3 | 16 | 114 | 342 | 449 | 3.80e-11 | 59.7 |
| Msa0583000 | AT5G35960.2 | 35.922 | 103 | 58 | 3 | 9 | 105 | 123 | 223 | 4.34e-11 | 59.3 |
| Msa0583000 | AT4G10010.2 | 32.710 | 107 | 61 | 3 | 24 | 121 | 160 | 264 | 4.51e-11 | 59.3 |
| Msa0583000 | AT5G35960.1 | 35.922 | 103 | 58 | 3 | 9 | 105 | 123 | 223 | 4.84e-11 | 59.3 |
| Msa0583000 | AT1G33770.1 | 32.710 | 107 | 61 | 3 | 24 | 121 | 145 | 249 | 6.17e-11 | 58.9 |
| Msa0583000 | AT1G29230.1 | 29.197 | 137 | 85 | 3 | 1 | 128 | 54 | 187 | 7.24e-11 | 58.5 |
Find 51 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAGGGTCCAAATTTATT+TGG | 0.173408 | 4_2:-1348808 | None:intergenic |
| ATTATCAAGCCAAATAAATT+TGG | 0.174416 | 4_2:+1348799 | Msa0583000:CDS |
| TGCAATTAAACAAGTTTCTT+TGG | 0.210243 | 4_2:+1346129 | Msa0583000:CDS |
| TAAACTGCAACCAACGATTC+TGG | 0.297136 | 4_2:-1348829 | None:intergenic |
| ATATTTATTATCAAGAGTTT+TGG | 0.300960 | 4_2:-1345190 | None:intergenic |
| GTGCTCAGCCACTGCCGTTT+AGG | 0.304962 | 4_2:+1345079 | Msa0583000:five_prime_UTR |
| TTTATATTGCCCAGGTTTGT+AGG | 0.316382 | 4_2:+1348848 | Msa0583000:CDS |
| GTGTGCTATTATAACGGAAA+TGG | 0.335740 | 4_2:-1344950 | None:intergenic |
| GTGGCAGTGGCGGCGGTGAT+AGG | 0.360222 | 4_2:-1345113 | None:intergenic |
| GGCGGTGGTGGCAGTGGCGG+CGG | 0.388474 | 4_2:-1345120 | None:intergenic |
| TGGTCGAGTTTACAAAGGTT+TGG | 0.394746 | 4_2:+1346084 | Msa0583000:CDS |
| GAGATTGGGAAAGGAGCTTA+TGG | 0.408857 | 4_2:+1346064 | Msa0583000:CDS |
| ATCTCTGCAAACGGCGGTGG+TGG | 0.409470 | 4_2:-1345132 | None:intergenic |
| AAAGGTTTGGACTTGGAGAA+TGG | 0.441540 | 4_2:+1346097 | Msa0583000:CDS |
| AACAGTTAAGCCTACAAACC+TGG | 0.445198 | 4_2:-1348858 | None:intergenic |
| TGTGCTATTATAACGGAAAT+GGG | 0.447516 | 4_2:-1344949 | None:intergenic |
| CAGATGCTGGGAGATGAGAT+TGG | 0.448262 | 4_2:+1346049 | Msa0583000:intron |
| TTCTTTGGAGAATATTGCTC+AGG | 0.453002 | 4_2:+1346144 | Msa0583000:CDS |
| GCAAACGGCGGTGGTGGCAG+TGG | 0.457658 | 4_2:-1345126 | None:intergenic |
| AATCGGCGGCGACATGGATA+CGG | 0.466925 | 4_2:+1345035 | Msa0583000:five_prime_UTR |
| CCATGTCGCCGCCGATTGAA+AGG | 0.471132 | 4_2:-1345029 | None:intergenic |
| GAGATGTCGCGTCAGTCTAC+TGG | 0.485098 | 4_2:+1345150 | Msa0583000:exon |
| AACGGCGGTGGTGGCAGTGG+CGG | 0.485336 | 4_2:-1345123 | None:intergenic |
| CATGTCGCCGCCGATTGAAA+GGG | 0.486448 | 4_2:-1345028 | None:intergenic |
| GCAACCAACGATTCTGGAAA+GGG | 0.494921 | 4_2:-1348823 | None:intergenic |
| AGTTTACAAAGGTTTGGACT+TGG | 0.497631 | 4_2:+1346090 | Msa0583000:CDS |
| AGGATAAACGAAATCCTAAA+CGG | 0.502333 | 4_2:-1345093 | None:intergenic |
| AGATGCTGGGAGATGAGATT+GGG | 0.503455 | 4_2:+1346050 | Msa0583000:intron |
| AAAAGTGTGTGCTATTATAA+CGG | 0.503563 | 4_2:-1344956 | None:intergenic |
| CCTTTCAATCGGCGGCGACA+TGG | 0.512321 | 4_2:+1345029 | Msa0583000:five_prime_UTR |
| ATTCATAGGTATGTTGAGAA+TGG | 0.522343 | 4_2:+1348763 | Msa0583000:intron |
| TGGACCCTTTCCAGAATCGT+TGG | 0.525643 | 4_2:+1348819 | Msa0583000:CDS |
| GACATCTCTGCAAACGGCGG+TGG | 0.541854 | 4_2:-1345135 | None:intergenic |
| ATTGCTTTGGAGCAGATGCT+GGG | 0.543015 | 4_2:+1346037 | Msa0583000:intron |
| TTTGGAGAATATTGCTCAGG+AGG | 0.546335 | 4_2:+1346147 | Msa0583000:CDS |
| GGAGGATCTCAACATTATCA+TGG | 0.556387 | 4_2:+1346165 | Msa0583000:CDS |
| GGTTGCAGTTTATATTGCCC+AGG | 0.559128 | 4_2:+1348840 | Msa0583000:CDS |
| ACATGGATACGGAAATTTGA+GGG | 0.567198 | 4_2:+1345046 | Msa0583000:five_prime_UTR |
| AACGAAATCCTAAACGGCAG+TGG | 0.574645 | 4_2:-1345087 | None:intergenic |
| CTGGGAGATGAGATTGGGAA+AGG | 0.585241 | 4_2:+1346055 | Msa0583000:CDS |
| TGCAACCAACGATTCTGGAA+AGG | 0.586841 | 4_2:-1348824 | None:intergenic |
| TGACGCGACATCTCTGCAAA+CGG | 0.596031 | 4_2:-1345141 | None:intergenic |
| GACATGGATACGGAAATTTG+AGG | 0.605610 | 4_2:+1345045 | Msa0583000:five_prime_UTR |
| ACAGTTAAGCCTACAAACCT+GGG | 0.610281 | 4_2:-1348857 | None:intergenic |
| ATGTCGCCGCCGATTGAAAG+GGG | 0.616166 | 4_2:-1345027 | None:intergenic |
| GCTTATGGTCGAGTTTACAA+AGG | 0.618315 | 4_2:+1346079 | Msa0583000:CDS |
| CTTACTCAAGAATTATGTGT+AGG | 0.628326 | 4_2:-1348654 | None:intergenic |
| GGATACGGAAATTTGAGGGA+GGG | 0.635365 | 4_2:+1345050 | Msa0583000:five_prime_UTR |
| TGTCGCCGCCGATTGAAAGG+GGG | 0.650955 | 4_2:-1345026 | None:intergenic |
| CGCGACATCTCTGCAAACGG+CGG | 0.664037 | 4_2:-1345138 | None:intergenic |
| TGGATACGGAAATTTGAGGG+AGG | 0.668088 | 4_2:+1345049 | Msa0583000:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTTTTTTAATTGTT+TGG | + | chr4_2:1347655-1347674 | Msa0583000:intron | 10.0% |
| !!! | AGTTTTTTTTTTAATTGTTT+GGG | + | chr4_2:1347656-1347675 | Msa0583000:intron | 10.0% |
| !! | TGACAAAAATTTATTAAAAA+TGG | - | chr4_2:1347764-1347783 | None:intergenic | 10.0% |
| !!! | ATATTTATTATCAAGAGTTT+TGG | - | chr4_2:1345193-1345212 | None:intergenic | 15.0% |
| !!! | CGTAAAATTTTAAAAGAAAA+CGG | - | chr4_2:1346197-1346216 | None:intergenic | 15.0% |
| !!! | CGTTTTCTTTTAAAATTTTA+CGG | + | chr4_2:1346195-1346214 | Msa0583000:intron | 15.0% |
| !! | GCTATTAATTATAAATGATT+AGG | + | chr4_2:1346220-1346239 | Msa0583000:intron | 15.0% |
| !!! | TACTTTTCTTTTTTAAATTG+CGG | - | chr4_2:1346535-1346554 | None:intergenic | 15.0% |
| !!! | ATCTGTTGTAAATATATTTT+GGG | - | chr4_2:1346766-1346785 | None:intergenic | 15.0% |
| !!! | TATCTGTTGTAAATATATTT+TGG | - | chr4_2:1346767-1346786 | None:intergenic | 15.0% |
| !!! | TATTGTTTTCAGTATTAATA+AGG | - | chr4_2:1347245-1347264 | None:intergenic | 15.0% |
| !! | ATATATGATTTCAATGTAAA+TGG | + | chr4_2:1347363-1347382 | Msa0583000:intron | 15.0% |
| !! | TAAAAAAAAAACTTCAGATT+GGG | - | chr4_2:1347649-1347668 | None:intergenic | 15.0% |
| !! | TTAAAAAAAAAACTTCAGAT+TGG | - | chr4_2:1347650-1347669 | None:intergenic | 15.0% |
| !! | AAAATTTATTAAAAATGGCT+CGG | - | chr4_2:1347759-1347778 | None:intergenic | 15.0% |
| !!! | TTTTTTGAAGTAAAAAAGTT+AGG | + | chr4_2:1347913-1347932 | Msa0583000:intron | 15.0% |
| !! | AAAAACATTGTAAAATATCT+TGG | + | chr4_2:1348610-1348629 | Msa0583000:CDS | 15.0% |
| !!! | GAAATTTGAAATTTGATTAG+TGG | + | chr4_2:1345297-1345316 | Msa0583000:intron | 20.0% |
| !! | TTATGAAATGATTGTAGTAA+TGG | + | chr4_2:1345412-1345431 | Msa0583000:intron | 20.0% |
| !!! | AACACATGTTAAATGTTTTT+TGG | + | chr4_2:1345776-1345795 | Msa0583000:intron | 20.0% |
| !!! | TTATTGAACTTTTTAAGTGT+TGG | + | chr4_2:1345882-1345901 | Msa0583000:intron | 20.0% |
| !!! | TTTTCTTTTTAAGTTGCATA+TGG | + | chr4_2:1345977-1345996 | Msa0583000:intron | 20.0% |
| !! | AAAAAAAAAGCAACAATAAG+AGG | - | chr4_2:1346833-1346852 | None:intergenic | 20.0% |
| !!! | CAATTTTTTAACCACTAATT+CGG | + | chr4_2:1346860-1346879 | Msa0583000:intron | 20.0% |
| !!! | AATTTTTTAACCACTAATTC+GGG | + | chr4_2:1346861-1346880 | Msa0583000:intron | 20.0% |
| !! | TTTATGATAGAATAATGACA+TGG | + | chr4_2:1347315-1347334 | Msa0583000:intron | 20.0% |
| !! | AAATTTATTAAAAATGGCTC+GGG | - | chr4_2:1347758-1347777 | None:intergenic | 20.0% |
| !!! | AGTGCTAAAATTTTAATTTG+TGG | + | chr4_2:1347836-1347855 | Msa0583000:intron | 20.0% |
| !! | GTTTATCATATCATATTATG+CGG | + | chr4_2:1348137-1348156 | Msa0583000:intron | 20.0% |
| !! | TTTATCATATCATATTATGC+GGG | + | chr4_2:1348138-1348157 | Msa0583000:intron | 20.0% |
| !! | TTATTAATTAGGGATTAACT+AGG | - | chr4_2:1348194-1348213 | None:intergenic | 20.0% |
| !! | TAGTTAATCCCTAATTAATA+AGG | + | chr4_2:1348193-1348212 | Msa0583000:intron | 20.0% |
| !! | TTGATCTTCCTTATTAATTA+GGG | - | chr4_2:1348204-1348223 | None:intergenic | 20.0% |
| !! | ATTGATCTTCCTTATTAATT+AGG | - | chr4_2:1348205-1348224 | None:intergenic | 20.0% |
| !! | ATAATTTATTGTCTTAGTCT+TGG | + | chr4_2:1348476-1348495 | Msa0583000:intron | 20.0% |
| !! | ATTATCAAGCCAAATAAATT+TGG | + | chr4_2:1348799-1348818 | Msa0583000:CDS | 20.0% |
| !! | AAAAGTGTGTGCTATTATAA+CGG | - | chr4_2:1344959-1344978 | None:intergenic | 25.0% |
| ! | TATTTGACTGAAGCAAAAAT+GGG | - | chr4_2:1344998-1345017 | None:intergenic | 25.0% |
| !!! | ATTATCAAGAGTTTTGGATT+TGG | - | chr4_2:1345187-1345206 | None:intergenic | 25.0% |
| !! | TTTGAAATTTGATTAGTGGA+AGG | + | chr4_2:1345301-1345320 | Msa0583000:intron | 25.0% |
| ! | TATGATGAATGATGAAGTTA+TGG | + | chr4_2:1345388-1345407 | Msa0583000:intron | 25.0% |
| !!! | TTTTAAGTTGCATATGGAAT+TGG | + | chr4_2:1345983-1346002 | Msa0583000:intron | 25.0% |
| ! | TGCAATTAAACAAGTTTCTT+TGG | + | chr4_2:1346129-1346148 | Msa0583000:CDS | 25.0% |
| ! | TATAAATGATTAGGTCTTGA+TGG | + | chr4_2:1346229-1346248 | Msa0583000:intron | 25.0% |
| ! | TAATTTAGTCCCAATTGAAA+TGG | + | chr4_2:1346267-1346286 | Msa0583000:intron | 25.0% |
| ! | AATTTAGTCCCAATTGAAAT+GGG | + | chr4_2:1346268-1346287 | Msa0583000:intron | 25.0% |
| !! | CACTAATGATGATATTTTCA+TGG | - | chr4_2:1346665-1346684 | None:intergenic | 25.0% |
| !!! | TAGTTCGTTACTTTTTATGT+TGG | + | chr4_2:1346717-1346736 | Msa0583000:intron | 25.0% |
| !!! | AGTTCGTTACTTTTTATGTT+GGG | + | chr4_2:1346718-1346737 | Msa0583000:intron | 25.0% |
| !!! | GCAAGAAATTGATTTGTTAA+AGG | + | chr4_2:1346936-1346955 | Msa0583000:intron | 25.0% |
| ! | ATCACAAAATTCTTCAAAAG+AGG | + | chr4_2:1347591-1347610 | Msa0583000:intron | 25.0% |
| ! | TCACAAAATTCTTCAAAAGA+GGG | + | chr4_2:1347592-1347611 | Msa0583000:intron | 25.0% |
| ! | TTATCATATCATATTATGCG+GGG | + | chr4_2:1348139-1348158 | Msa0583000:intron | 25.0% |
| ! | TGTGCTATTATAACGGAAAT+GGG | - | chr4_2:1344952-1344971 | None:intergenic | 30.0% |
| ATTTGACTGAAGCAAAAATG+GGG | - | chr4_2:1344997-1345016 | None:intergenic | 30.0% | |
| CTATTTGACTGAAGCAAAAA+TGG | - | chr4_2:1344999-1345018 | None:intergenic | 30.0% | |
| AGGATAAACGAAATCCTAAA+CGG | - | chr4_2:1345096-1345115 | None:intergenic | 30.0% | |
| ATTTGATTAGTGGAAGGTTT+AGG | + | chr4_2:1345307-1345326 | Msa0583000:intron | 30.0% | |
| AAATGATTGTAGTAATGGTG+AGG | + | chr4_2:1345417-1345436 | Msa0583000:intron | 30.0% | |
| ! | ATTGAAACCCTAGTATTTTG+CGG | + | chr4_2:1345459-1345478 | Msa0583000:intron | 30.0% |
| CAGTACAATTGAAATAGAGA+TGG | + | chr4_2:1345581-1345600 | Msa0583000:intron | 30.0% | |
| TACAATTGAAATAGAGATGG+TGG | + | chr4_2:1345584-1345603 | Msa0583000:intron | 30.0% | |
| !!! | ATCGAGTGTTTAGTGTTTTT+TGG | + | chr4_2:1345750-1345769 | Msa0583000:intron | 30.0% |
| !! | TTGATGGCTTGATATTTTGA+TGG | + | chr4_2:1346011-1346030 | Msa0583000:intron | 30.0% |
| CAATGATTGTGTGATTAAAG+CGG | + | chr4_2:1346297-1346316 | Msa0583000:intron | 30.0% | |
| AATGATTGTGTGATTAAAGC+GGG | + | chr4_2:1346298-1346317 | Msa0583000:intron | 30.0% | |
| ! | TCAATCCAAACACACTTTTA+GGG | - | chr4_2:1346361-1346380 | None:intergenic | 30.0% |
| ! | TAAAAGTGTGTTTGGATTGA+GGG | + | chr4_2:1346361-1346380 | Msa0583000:intron | 30.0% |
| ! | AAACACACCCTAAAGTTTTA+GGG | + | chr4_2:1346587-1346606 | Msa0583000:intron | 30.0% |
| !!! | GTAGTTTTTGGAGTTATTTG+CGG | + | chr4_2:1346629-1346648 | Msa0583000:intron | 30.0% |
| !!! | TAGTTTTTGGAGTTATTTGC+GGG | + | chr4_2:1346630-1346649 | Msa0583000:intron | 30.0% |
| AATATCATCATTAGTGTCGT+AGG | + | chr4_2:1346669-1346688 | Msa0583000:intron | 30.0% | |
| TACTGCAAATCTAACATTTG+AGG | - | chr4_2:1346972-1346991 | None:intergenic | 30.0% | |
| TTCCTCCTATGTATATATTG+TGG | + | chr4_2:1347047-1347066 | Msa0583000:intron | 30.0% | |
| TTCAGCCACAATATATACAT+AGG | - | chr4_2:1347055-1347074 | None:intergenic | 30.0% | |
| TATTGACATGAATGATGTGT+TGG | + | chr4_2:1347148-1347167 | Msa0583000:intron | 30.0% | |
| !! | TTAAGAGTATCTCTGAGAAT+TGG | - | chr4_2:1347290-1347309 | None:intergenic | 30.0% |
| AAATGGTCTAAATTCACCAA+AGG | + | chr4_2:1347380-1347399 | Msa0583000:intron | 30.0% | |
| AATGGTCTAAATTCACCAAA+GGG | + | chr4_2:1347381-1347400 | Msa0583000:intron | 30.0% | |
| ATCAATGTTATAAAGCCCTT+TGG | - | chr4_2:1347399-1347418 | None:intergenic | 30.0% | |
| ! | AAGGGCTTTATAACATTGAT+TGG | + | chr4_2:1347399-1347418 | Msa0583000:intron | 30.0% |
| AAAATTCTTCAAAAGAGGGT+GGG | + | chr4_2:1347596-1347615 | Msa0583000:intron | 30.0% | |
| AAAAAAACTTCAGATTGGGT+TGG | - | chr4_2:1347645-1347664 | None:intergenic | 30.0% | |
| ! | AATCAAATTTTCATCGGATC+GGG | - | chr4_2:1348017-1348036 | None:intergenic | 30.0% |
| ! | CAATCAAATTTTCATCGGAT+CGG | - | chr4_2:1348018-1348037 | None:intergenic | 30.0% |
| GATCCGATGAAAATTTGATT+GGG | + | chr4_2:1348017-1348036 | Msa0583000:intron | 30.0% | |
| ! | TGACCCAATCAAATTTTCAT+CGG | - | chr4_2:1348023-1348042 | None:intergenic | 30.0% |
| GGGAGAATGTACATTTATAT+GGG | + | chr4_2:1348159-1348178 | Msa0583000:intron | 30.0% | |
| GAATGTACATTTATATGGGT+AGG | + | chr4_2:1348163-1348182 | Msa0583000:intron | 30.0% | |
| AATATCTCAACAGAGTGTAA+TGG | + | chr4_2:1348299-1348318 | Msa0583000:intron | 30.0% | |
| !! | TTATTGTCTTAGTCTTGGAT+TGG | + | chr4_2:1348481-1348500 | Msa0583000:intron | 30.0% |
| !!! | TTTGAGATTTTGAGCATTGA+TGG | + | chr4_2:1348519-1348538 | Msa0583000:intron | 30.0% |
| !!! | ATTTTGAGCATTGATGGAAT+TGG | + | chr4_2:1348525-1348544 | Msa0583000:intron | 30.0% |
| CTTACTCAAGAATTATGTGT+AGG | - | chr4_2:1348657-1348676 | None:intergenic | 30.0% | |
| CACATTGTTTGCAAATTCAT+AGG | + | chr4_2:1348749-1348768 | Msa0583000:intron | 30.0% | |
| ATTCATAGGTATGTTGAGAA+TGG | + | chr4_2:1348763-1348782 | Msa0583000:intron | 30.0% | |
| ! | GTGTGCTATTATAACGGAAA+TGG | - | chr4_2:1344953-1344972 | None:intergenic | 35.0% |
| TTTGACTGAAGCAAAAATGG+GGG | - | chr4_2:1344996-1345015 | None:intergenic | 35.0% | |
| ACATGGATACGGAAATTTGA+GGG | + | chr4_2:1345046-1345065 | Msa0583000:five_prime_UTR | 35.0% | |
| !!! | AGTTTTGGATTTGGTGAAAG+CGG | - | chr4_2:1345178-1345197 | None:intergenic | 35.0% |
| AATAGTAGAAAGCAAGCTGA+TGG | + | chr4_2:1345492-1345511 | Msa0583000:intron | 35.0% | |
| AGGATTTCACGATAATATGC+TGG | + | chr4_2:1345626-1345645 | Msa0583000:intron | 35.0% | |
| !! | TATGGAATTGGCTTGTTTGA+TGG | + | chr4_2:1345995-1346014 | Msa0583000:intron | 35.0% |
| !! | ATTTTGATGGCTGATTGCTT+TGG | + | chr4_2:1346024-1346043 | Msa0583000:intron | 35.0% |
| AGTTTACAAAGGTTTGGACT+TGG | + | chr4_2:1346090-1346109 | Msa0583000:CDS | 35.0% | |
| ! | TTCTTTGGAGAATATTGCTC+AGG | + | chr4_2:1346144-1346163 | Msa0583000:CDS | 35.0% |
| CGCTTTAATCACACAATCAT+TGG | - | chr4_2:1346299-1346318 | None:intergenic | 35.0% | |
| ! | GAAAACCCTAAAAGTGTGTT+TGG | + | chr4_2:1346353-1346372 | Msa0583000:intron | 35.0% |
| ! | CTCAATCCAAACACACTTTT+AGG | - | chr4_2:1346362-1346381 | None:intergenic | 35.0% |
| ! | CTAAAAGTGTGTTTGGATTG+AGG | + | chr4_2:1346360-1346379 | Msa0583000:intron | 35.0% |
| !! | CTAAAACTTTAGGGTGTGTT+TGG | - | chr4_2:1346588-1346607 | None:intergenic | 35.0% |
| ! | CAAACACACCCTAAAGTTTT+AGG | + | chr4_2:1346586-1346605 | Msa0583000:intron | 35.0% |
| !! | CTTCCAACTTTGGTAGTTTT+TGG | + | chr4_2:1346617-1346636 | Msa0583000:intron | 35.0% |
| ACTCCAAAAACTACCAAAGT+TGG | - | chr4_2:1346623-1346642 | None:intergenic | 35.0% | |
| AGCCACAATATATACATAGG+AGG | - | chr4_2:1347052-1347071 | None:intergenic | 35.0% | |
| TATATTGTGGCTGAAGCTTT+AGG | + | chr4_2:1347060-1347079 | Msa0583000:intron | 35.0% | |
| CAAAATTCTTCAAAAGAGGG+TGG | + | chr4_2:1347595-1347614 | Msa0583000:intron | 35.0% | |
| TGTGGAATTTAGTCAAGTGT+TGG | + | chr4_2:1347854-1347873 | Msa0583000:intron | 35.0% | |
| CGATCCGATGAAAATTTGAT+TGG | + | chr4_2:1348016-1348035 | Msa0583000:intron | 35.0% | |
| GGGGAGAATGTACATTTATA+TGG | + | chr4_2:1348158-1348177 | Msa0583000:intron | 35.0% | |
| !! | TTTTAACAGTTGTGGTGTCA+CGG | - | chr4_2:1348344-1348363 | None:intergenic | 35.0% |
| !! | ACGTCACATTTTAACAGTTG+TGG | - | chr4_2:1348352-1348371 | None:intergenic | 35.0% |
| TAAAATGTGACGTGATGTGA+CGG | + | chr4_2:1348359-1348378 | Msa0583000:intron | 35.0% | |
| TGTTGGAAGATTTAATCGTG+AGG | + | chr4_2:1348697-1348716 | Msa0583000:intron | 35.0% | |
| GTTGGAAGATTTAATCGTGA+GGG | + | chr4_2:1348698-1348717 | Msa0583000:intron | 35.0% | |
| GGAAAGGGTCCAAATTTATT+TGG | - | chr4_2:1348811-1348830 | None:intergenic | 35.0% | |
| TTTATATTGCCCAGGTTTGT+AGG | + | chr4_2:1348848-1348867 | Msa0583000:CDS | 35.0% | |
| ! | GAAGCAAAAATGGGGGTATA+TGG | - | chr4_2:1344989-1345008 | None:intergenic | 40.0% |
| GACATGGATACGGAAATTTG+AGG | + | chr4_2:1345045-1345064 | Msa0583000:five_prime_UTR | 40.0% | |
| GATTAGTGGAAGGTTTAGGT+TGG | + | chr4_2:1345311-1345330 | Msa0583000:intron | 40.0% | |
| TTCGCAGGTGTAATGTTGAA+CGG | + | chr4_2:1345548-1345567 | Msa0583000:intron | 40.0% | |
| GTTGCAGTAATGAGCTAAAG+AGG | + | chr4_2:1345606-1345625 | Msa0583000:intron | 40.0% | |
| GCTTATGGTCGAGTTTACAA+AGG | + | chr4_2:1346079-1346098 | Msa0583000:CDS | 40.0% | |
| TGGTCGAGTTTACAAAGGTT+TGG | + | chr4_2:1346084-1346103 | Msa0583000:CDS | 40.0% | |
| AAAGGTTTGGACTTGGAGAA+TGG | + | chr4_2:1346097-1346116 | Msa0583000:CDS | 40.0% | |
| TTTGGAGAATATTGCTCAGG+AGG | + | chr4_2:1346147-1346166 | Msa0583000:CDS | 40.0% | |
| GGAGGATCTCAACATTATCA+TGG | + | chr4_2:1346165-1346184 | Msa0583000:CDS | 40.0% | |
| GGACTAAATTAACTCCACCA+AGG | - | chr4_2:1346258-1346277 | None:intergenic | 40.0% | |
| TGGTGTGTCCCATTTCAATT+GGG | - | chr4_2:1346279-1346298 | None:intergenic | 40.0% | |
| TTGGTGTGTCCCATTTCAAT+TGG | - | chr4_2:1346280-1346299 | None:intergenic | 40.0% | |
| GTGATTAAAGCGGGATTACT+AGG | + | chr4_2:1346307-1346326 | Msa0583000:intron | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr4_2:1346367-1346386 | Msa0583000:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | + | chr4_2:1346371-1346390 | Msa0583000:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | - | chr4_2:1346371-1346390 | None:intergenic | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | - | chr4_2:1346367-1346386 | None:intergenic | 40.0% | |
| TTAGGGTGTGTTTGGATTGA+GGG | - | chr4_2:1346580-1346599 | None:intergenic | 40.0% | |
| ! | TTTAGGGTGTGTTTGGATTG+AGG | - | chr4_2:1346581-1346600 | None:intergenic | 40.0% |
| TTGCAGGCCCTAAAACTTTA+GGG | - | chr4_2:1346597-1346616 | None:intergenic | 40.0% | |
| CTAACGAAGAGCAGTATAAG+TGG | - | chr4_2:1346700-1346719 | None:intergenic | 40.0% | |
| ACCTGTGACTATGCTGTTAT+TGG | + | chr4_2:1346892-1346911 | Msa0583000:intron | 40.0% | |
| TCCAATAACAGCATAGTCAC+AGG | - | chr4_2:1346896-1346915 | None:intergenic | 40.0% | |
| GTGACTATGCTGTTATTGGA+TGG | + | chr4_2:1346896-1346915 | Msa0583000:intron | 40.0% | |
| !! | TCTTTTGCTTGATAGCTCTC+AGG | + | chr4_2:1347009-1347028 | Msa0583000:intron | 40.0% |
| !! | CTTTTGCTTGATAGCTCTCA+GGG | + | chr4_2:1347010-1347029 | Msa0583000:intron | 40.0% |
| GTGGGAAACCATAGACAATA+GGG | + | chr4_2:1347614-1347633 | Msa0583000:intron | 40.0% | |
| TGGGAAACCATAGACAATAG+GGG | + | chr4_2:1347615-1347634 | Msa0583000:intron | 40.0% | |
| !! | AAACCCAAAGTGGTTTGGTT+CGG | + | chr4_2:1347701-1347720 | Msa0583000:intron | 40.0% |
| TATCCGAACCAAACCACTTT+GGG | - | chr4_2:1347707-1347726 | None:intergenic | 40.0% | |
| TTATCCGAACCAAACCACTT+TGG | - | chr4_2:1347708-1347727 | None:intergenic | 40.0% | |
| !! | AAGTGGTTTGGTTCGGATAA+TGG | + | chr4_2:1347708-1347727 | Msa0583000:intron | 40.0% |
| !! | AGTGGTTTGGTTCGGATAAT+GGG | + | chr4_2:1347709-1347728 | Msa0583000:intron | 40.0% |
| TCAAAACCAACTCAATCCAG+TGG | - | chr4_2:1347973-1347992 | None:intergenic | 40.0% | |
| AGTAGCGTTGTAGTCAATCA+CGG | - | chr4_2:1348426-1348445 | None:intergenic | 40.0% | |
| TATTACAGCATCAGCAGACA+TGG | - | chr4_2:1348452-1348471 | None:intergenic | 40.0% | |
| GCTCAACTCTTTCTCAATGT+TGG | + | chr4_2:1348680-1348699 | Msa0583000:intron | 40.0% | |
| TAAACTGCAACCAACGATTC+TGG | - | chr4_2:1348832-1348851 | None:intergenic | 40.0% | |
| ACAGTTAAGCCTACAAACCT+GGG | - | chr4_2:1348860-1348879 | None:intergenic | 40.0% | |
| AACAGTTAAGCCTACAAACC+TGG | - | chr4_2:1348861-1348880 | None:intergenic | 40.0% | |
| ! | GTTTTCCACCCCCTTTCAAT+CGG | + | chr4_2:1345018-1345037 | Msa0583000:five_prime_UTR | 45.0% |
| TGGATACGGAAATTTGAGGG+AGG | + | chr4_2:1345049-1345068 | Msa0583000:five_prime_UTR | 45.0% | |
| GGATACGGAAATTTGAGGGA+GGG | + | chr4_2:1345050-1345069 | Msa0583000:five_prime_UTR | 45.0% | |
| AACGAAATCCTAAACGGCAG+TGG | - | chr4_2:1345090-1345109 | None:intergenic | 45.0% | |
| ! | GAAACCCTAGTATTTTGCGG+TGG | + | chr4_2:1345462-1345481 | Msa0583000:intron | 45.0% |
| ACAGCCACCGCAAAATACTA+GGG | - | chr4_2:1345469-1345488 | None:intergenic | 45.0% | |
| ! | TAATGTTGAACGGTGGTGGT+AGG | + | chr4_2:1345558-1345577 | Msa0583000:intron | 45.0% |
| AAGGGATACTCCTGCTGAAT+TGG | + | chr4_2:1345681-1345700 | Msa0583000:intron | 45.0% | |
| !! | AAGTGTTGGAGAGTGTGTAG+AGG | + | chr4_2:1345896-1345915 | Msa0583000:intron | 45.0% |
| ! | AGTGTTGGAGAGTGTGTAGA+GGG | + | chr4_2:1345897-1345916 | Msa0583000:intron | 45.0% |
| !! | ATTGCTTTGGAGCAGATGCT+GGG | + | chr4_2:1346037-1346056 | Msa0583000:intron | 45.0% |
| AGATGCTGGGAGATGAGATT+GGG | + | chr4_2:1346050-1346069 | Msa0583000:intron | 45.0% | |
| GAGATTGGGAAAGGAGCTTA+TGG | + | chr4_2:1346064-1346083 | Msa0583000:CDS | 45.0% | |
| ! | TTAGGTCTTGATGGCATCCT+TGG | + | chr4_2:1346238-1346257 | Msa0583000:intron | 45.0% |
| GTTTGGATTGAGGGTTTAGG+AGG | + | chr4_2:1346370-1346389 | Msa0583000:intron | 45.0% | |
| ATTGAGGGTTTAGGAGGGAA+GGG | + | chr4_2:1346376-1346395 | Msa0583000:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | - | chr4_2:1346372-1346391 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | - | chr4_2:1346370-1346389 | None:intergenic | 45.0% | |
| GTTGCAGGCCCTAAAACTTT+AGG | - | chr4_2:1346598-1346617 | None:intergenic | 45.0% | |
| CTACCAAAGTTGGAAGTTGC+AGG | - | chr4_2:1346613-1346632 | None:intergenic | 45.0% | |
| GTAAACAGCACCCGAATTAG+TGG | - | chr4_2:1346874-1346893 | None:intergenic | 45.0% | |
| AACAACAAAGCCTTTCCCCA+CGG | - | chr4_2:1347443-1347462 | None:intergenic | 45.0% | |
| TTGTGCCATGAACATGCTTG+CGG | + | chr4_2:1347567-1347586 | Msa0583000:intron | 45.0% | |
| TGATTCCGCAAGCATGTTCA+TGG | - | chr4_2:1347575-1347594 | None:intergenic | 45.0% | |
| GGTGGGAAACCATAGACAAT+AGG | + | chr4_2:1347613-1347632 | Msa0583000:intron | 45.0% | |
| TGGATTGCCCCTATTGTCTA+TGG | - | chr4_2:1347625-1347644 | None:intergenic | 45.0% | |
| ! | AAACCACTTTGGGTTTGGTC+GGG | - | chr4_2:1347697-1347716 | None:intergenic | 45.0% |
| ! | CAAACCACTTTGGGTTTGGT+CGG | - | chr4_2:1347698-1347717 | None:intergenic | 45.0% |
| ! | GAACCAAACCACTTTGGGTT+TGG | - | chr4_2:1347702-1347721 | None:intergenic | 45.0% |
| !! | GTGGTTTGGTTCGGATAATG+GGG | + | chr4_2:1347710-1347729 | Msa0583000:intron | 45.0% |
| !! | TGGTTTGGTTCGGATAATGG+GGG | + | chr4_2:1347711-1347730 | Msa0583000:intron | 45.0% |
| AACTCAATCCAGTGGTAAGC+GGG | - | chr4_2:1347965-1347984 | None:intergenic | 45.0% | |
| CAACTCAATCCAGTGGTAAG+CGG | - | chr4_2:1347966-1347985 | None:intergenic | 45.0% | |
| AATCCAGCTAAAACAGACCC+TGG | + | chr4_2:1348050-1348069 | Msa0583000:intron | 45.0% | |
| TATACCACTAGGGGCAACAT+TGG | + | chr4_2:1348075-1348094 | Msa0583000:intron | 45.0% | |
| ATACCACTAGGGGCAACATT+GGG | + | chr4_2:1348076-1348095 | Msa0583000:intron | 45.0% | |
| ACAGAGTGTAATGGCCACAA+TGG | + | chr4_2:1348308-1348327 | Msa0583000:intron | 45.0% | |
| ATGTGACGGTTTCAGTGGTT+AGG | + | chr4_2:1348373-1348392 | Msa0583000:intron | 45.0% | |
| TAGCGTTGTAGTCAATCACG+GGG | - | chr4_2:1348424-1348443 | None:intergenic | 45.0% | |
| GTAGCGTTGTAGTCAATCAC+GGG | - | chr4_2:1348425-1348444 | None:intergenic | 45.0% | |
| ! | GCAACCAACGATTCTGGAAA+GGG | - | chr4_2:1348826-1348845 | None:intergenic | 45.0% |
| ! | TGCAACCAACGATTCTGGAA+AGG | - | chr4_2:1348827-1348846 | None:intergenic | 45.0% |
| GGTTGCAGTTTATATTGCCC+AGG | + | chr4_2:1348840-1348859 | Msa0583000:CDS | 45.0% | |
| TGACGCGACATCTCTGCAAA+CGG | - | chr4_2:1345144-1345163 | None:intergenic | 50.0% | |
| CACAGCCACCGCAAAATACT+AGG | - | chr4_2:1345470-1345489 | None:intergenic | 50.0% | |
| ! | CAAGCTGATGGTAGTGTAGC+TGG | + | chr4_2:1345504-1345523 | Msa0583000:intron | 50.0% |
| GCAGGTGTAATGTTGAACGG+TGG | + | chr4_2:1345551-1345570 | Msa0583000:intron | 50.0% | |
| GGTGTAATGTTGAACGGTGG+TGG | + | chr4_2:1345554-1345573 | Msa0583000:intron | 50.0% | |
| AAGATAGTTGTGACGTGCGC+TGG | + | chr4_2:1345654-1345673 | Msa0583000:intron | 50.0% | |
| ACTCCTGCTGAATTGGATGC+TGG | + | chr4_2:1345688-1345707 | Msa0583000:intron | 50.0% | |
| CTTCCAGCATCCAATTCAGC+AGG | - | chr4_2:1345694-1345713 | None:intergenic | 50.0% | |
| !! | GATTGCTTTGGAGCAGATGC+TGG | + | chr4_2:1346036-1346055 | Msa0583000:intron | 50.0% |
| CAGATGCTGGGAGATGAGAT+TGG | + | chr4_2:1346049-1346068 | Msa0583000:intron | 50.0% | |
| CTGGGAGATGAGATTGGGAA+AGG | + | chr4_2:1346055-1346074 | Msa0583000:CDS | 50.0% | |
| GATTGAGGGTTTAGGAGGGA+AGG | + | chr4_2:1346375-1346394 | Msa0583000:intron | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+GGG | - | chr4_2:1346565-1346584 | None:intergenic | 50.0% | |
| CATGTAGCTAGCCATACCGT+GGG | + | chr4_2:1347424-1347443 | Msa0583000:intron | 50.0% | |
| ATGTAGCTAGCCATACCGTG+GGG | + | chr4_2:1347425-1347444 | Msa0583000:intron | 50.0% | |
| CGACCAAACCCAAAGTGGTT+TGG | + | chr4_2:1347696-1347715 | Msa0583000:intron | 50.0% | |
| CGCTTACCACTGGATTGAGT+TGG | + | chr4_2:1347964-1347983 | Msa0583000:intron | 50.0% | |
| !!! | ACACCAGGGTCTGTTTTAGC+TGG | - | chr4_2:1348056-1348075 | None:intergenic | 50.0% |
| AGACCCTGGTGTATACCACT+AGG | + | chr4_2:1348064-1348083 | Msa0583000:intron | 50.0% | |
| GACCCTGGTGTATACCACTA+GGG | + | chr4_2:1348065-1348084 | Msa0583000:intron | 50.0% | |
| ACCCTGGTGTATACCACTAG+GGG | + | chr4_2:1348066-1348085 | Msa0583000:intron | 50.0% | |
| ATGGCCACAATGGCTGTGAT+TGG | + | chr4_2:1348318-1348337 | Msa0583000:intron | 50.0% | |
| ACGTGATGTGACGGTTTCAG+TGG | + | chr4_2:1348368-1348387 | Msa0583000:intron | 50.0% | |
| ! | TGGTTAGGTGCCATGATGCT+AGG | + | chr4_2:1348388-1348407 | Msa0583000:intron | 50.0% |
| ! | GGTTAGGTGCCATGATGCTA+GGG | + | chr4_2:1348389-1348408 | Msa0583000:intron | 50.0% |
| CACTACCTACCCTAGCATCA+TGG | - | chr4_2:1348401-1348420 | None:intergenic | 50.0% | |
| TGGACCCTTTCCAGAATCGT+TGG | + | chr4_2:1348819-1348838 | Msa0583000:CDS | 50.0% | |
| TTCCACCCCCTTTCAATCGG+CGG | + | chr4_2:1345021-1345040 | Msa0583000:five_prime_UTR | 55.0% | |
| ! | ATGTCGCCGCCGATTGAAAG+GGG | - | chr4_2:1345030-1345049 | None:intergenic | 55.0% |
| ! | CATGTCGCCGCCGATTGAAA+GGG | - | chr4_2:1345031-1345050 | None:intergenic | 55.0% |
| AATCGGCGGCGACATGGATA+CGG | + | chr4_2:1345035-1345054 | Msa0583000:five_prime_UTR | 55.0% | |
| GAGATGTCGCGTCAGTCTAC+TGG | + | chr4_2:1345150-1345169 | Msa0583000:exon | 55.0% | |
| ! | TGTAGCTGGTAGCGTTGCAG+CGG | + | chr4_2:1345518-1345537 | Msa0583000:intron | 55.0% |
| ATAGTTGTGACGTGCGCTGG+AGG | + | chr4_2:1345657-1345676 | Msa0583000:intron | 55.0% | |
| ! | GGTCTTGATGGCATCCTTGG+TGG | + | chr4_2:1346241-1346260 | Msa0583000:intron | 55.0% |
| AGGGTTTAGGAGGGAAGGGA+GGG | + | chr4_2:1346380-1346399 | Msa0583000:intron | 55.0% | |
| TTGAGGGTTTAGGAGGGGAG+GGG | - | chr4_2:1346564-1346583 | None:intergenic | 55.0% | |
| GATTGAGGGTTTAGGAGGGG+AGG | - | chr4_2:1346566-1346585 | None:intergenic | 55.0% | |
| GGGCCTGCAACTTCCAACTT+TGG | + | chr4_2:1346607-1346626 | Msa0583000:intron | 55.0% | |
| ! | CCACGGTATGGCTAGCTACA+TGG | - | chr4_2:1347426-1347445 | None:intergenic | 55.0% |
| CCATGTAGCTAGCCATACCG+TGG | + | chr4_2:1347423-1347442 | Msa0583000:intron | 55.0% | |
| CAAAGCCTTTCCCCACGGTA+TGG | - | chr4_2:1347438-1347457 | None:intergenic | 55.0% | |
| !! | GGGTTTGGTCGGGTTGATTC+AGG | - | chr4_2:1347687-1347706 | None:intergenic | 55.0% |
| CAACCCGACCAAACCCAAAG+TGG | + | chr4_2:1347691-1347710 | Msa0583000:intron | 55.0% | |
| !! | TGGTAAGCGGGTTGCTTGAG+GGG | - | chr4_2:1347953-1347972 | None:intergenic | 55.0% |
| !! | GTGGTAAGCGGGTTGCTTGA+GGG | - | chr4_2:1347954-1347973 | None:intergenic | 55.0% |
| !! | AGTGGTAAGCGGGTTGCTTG+AGG | - | chr4_2:1347955-1347974 | None:intergenic | 55.0% |
| TCAAGCAACCCGCTTACCAC+TGG | + | chr4_2:1347954-1347973 | Msa0583000:intron | 55.0% | |
| GCCCCTAGTGGTATACACCA+GGG | - | chr4_2:1348070-1348089 | None:intergenic | 55.0% | |
| TGCCCCTAGTGGTATACACC+AGG | - | chr4_2:1348071-1348090 | None:intergenic | 55.0% | |
| AGACCCAATGTTGCCCCTAG+TGG | - | chr4_2:1348082-1348101 | None:intergenic | 55.0% | |
| ACGGCCAATCACAGCCATTG+TGG | - | chr4_2:1348325-1348344 | None:intergenic | 55.0% | |
| ! | AGGTGCCATGATGCTAGGGT+AGG | + | chr4_2:1348393-1348412 | Msa0583000:intron | 55.0% |
| ! | TGTCGCCGCCGATTGAAAGG+GGG | - | chr4_2:1345029-1345048 | None:intergenic | 60.0% |
| ! | CCATGTCGCCGCCGATTGAA+AGG | - | chr4_2:1345032-1345051 | None:intergenic | 60.0% |
| CCTTTCAATCGGCGGCGACA+TGG | + | chr4_2:1345029-1345048 | Msa0583000:five_prime_UTR | 60.0% | |
| ! | GTGCTCAGCCACTGCCGTTT+AGG | + | chr4_2:1345079-1345098 | Msa0583000:five_prime_UTR | 60.0% |
| ATCTCTGCAAACGGCGGTGG+TGG | - | chr4_2:1345135-1345154 | None:intergenic | 60.0% | |
| GACATCTCTGCAAACGGCGG+TGG | - | chr4_2:1345138-1345157 | None:intergenic | 60.0% | |
| CGCGACATCTCTGCAAACGG+CGG | - | chr4_2:1345141-1345160 | None:intergenic | 60.0% | |
| !! | TGCAGCGGCATTGACTTCGC+AGG | + | chr4_2:1345533-1345552 | Msa0583000:intron | 60.0% |
| GAGGGTTTAGGAGGGAAGGG+AGG | + | chr4_2:1346379-1346398 | Msa0583000:intron | 60.0% | |
| GGGTTTAGGAGGGAAGGGAG+GGG | + | chr4_2:1346381-1346400 | Msa0583000:intron | 60.0% | |
| TTTAGGAGGGAAGGGAGGGG+AGG | + | chr4_2:1346384-1346403 | Msa0583000:intron | 60.0% | |
| TTAGGAGGGAAGGGAGGGGA+GGG | + | chr4_2:1346385-1346404 | Msa0583000:intron | 60.0% | |
| GCTAGCCATACCGTGGGGAA+AGG | + | chr4_2:1347430-1347449 | Msa0583000:intron | 60.0% | |
| !! | GGTAAGCGGGTTGCTTGAGG+GGG | - | chr4_2:1347952-1347971 | None:intergenic | 60.0% |
| TGTGACGTGCGCTGGAGGCA+AGG | + | chr4_2:1345662-1345681 | Msa0583000:intron | 65.0% | |
| GTGACGTGCGCTGGAGGCAA+GGG | + | chr4_2:1345663-1345682 | Msa0583000:intron | 65.0% | |
| GGGTTTAGGAGGGGAGGGGA+GGG | - | chr4_2:1346560-1346579 | None:intergenic | 65.0% | |
| AGGGTTTAGGAGGGGAGGGG+AGG | - | chr4_2:1346561-1346580 | None:intergenic | 65.0% | |
| !! | AGCGGGTTGCTTGAGGGGGT+CGG | - | chr4_2:1347948-1347967 | None:intergenic | 65.0% |
| ! | CGCCGCCGATTGAAAGGGGG+TGG | - | chr4_2:1345026-1345045 | None:intergenic | 70.0% |
| GTGGCAGTGGCGGCGGTGAT+AGG | - | chr4_2:1345116-1345135 | None:intergenic | 70.0% | |
| ! | AACGGCGGTGGTGGCAGTGG+CGG | - | chr4_2:1345126-1345145 | None:intergenic | 70.0% |
| ! | GCAAACGGCGGTGGTGGCAG+TGG | - | chr4_2:1345129-1345148 | None:intergenic | 70.0% |
| !! | GGCGGTGGTGGCAGTGGCGG+CGG | - | chr4_2:1345123-1345142 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 1344942 | 1348888 | 1344942 | ID=Msa0583000;Name=Msa0583000 |
| chr4_2 | mRNA | 1344942 | 1348888 | 1344942 | ID=Msa0583000-mRNA-1;Parent=Msa0583000;Name=Msa0583000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=211|0.66|0.75|1|1|1|4|0|128 |
| chr4_2 | exon | 1344942 | 1345212 | 1344942 | ID=Msa0583000-mRNA-1:exon:366;Parent=Msa0583000-mRNA-1 |
| chr4_2 | exon | 1346052 | 1346186 | 1346052 | ID=Msa0583000-mRNA-1:exon:367;Parent=Msa0583000-mRNA-1 |
| chr4_2 | exon | 1348598 | 1348671 | 1348598 | ID=Msa0583000-mRNA-1:exon:368;Parent=Msa0583000-mRNA-1 |
| chr4_2 | exon | 1348771 | 1348888 | 1348771 | ID=Msa0583000-mRNA-1:exon:369;Parent=Msa0583000-mRNA-1 |
| chr4_2 | five_prime_UTR | 1344942 | 1345152 | 1344942 | ID=Msa0583000-mRNA-1:five_prime_utr;Parent=Msa0583000-mRNA-1 |
| chr4_2 | CDS | 1345153 | 1345212 | 1345153 | ID=Msa0583000-mRNA-1:cds;Parent=Msa0583000-mRNA-1 |
| chr4_2 | CDS | 1346052 | 1346186 | 1346052 | ID=Msa0583000-mRNA-1:cds;Parent=Msa0583000-mRNA-1 |
| chr4_2 | CDS | 1348598 | 1348671 | 1348598 | ID=Msa0583000-mRNA-1:cds;Parent=Msa0583000-mRNA-1 |
| chr4_2 | CDS | 1348771 | 1348888 | 1348771 | ID=Msa0583000-mRNA-1:cds;Parent=Msa0583000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
