Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583850 | RHN78227.1 | 75.216 | 347 | 31 | 3 | 2 | 305 | 25 | 359 | 2.74e-163 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583850 | A0A396JU70 | 75.216 | 347 | 31 | 3 | 2 | 305 | 25 | 359 | 1.31e-163 | 468 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0583850 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583850 | MtrunA17_Chr1g0163221 | 75.216 | 347 | 31 | 3 | 2 | 305 | 25 | 359 | 2.52e-167 | 468 |
| Msa0583850 | MtrunA17_Chr4g0067431 | 60.915 | 284 | 93 | 7 | 2 | 271 | 29 | 308 | 9.48e-109 | 318 |
| Msa0583850 | MtrunA17_Chr6g0467351 | 58.824 | 204 | 70 | 3 | 2 | 197 | 29 | 226 | 1.07e-75 | 231 |
| Msa0583850 | MtrunA17_Chr1g0163061 | 47.679 | 237 | 70 | 4 | 2 | 184 | 29 | 265 | 5.86e-48 | 161 |
| Msa0583850 | MtrunA17_Chr1g0208771 | 26.766 | 269 | 176 | 8 | 4 | 258 | 13 | 274 | 2.34e-26 | 108 |
| Msa0583850 | MtrunA17_Chr1g0163071 | 29.123 | 285 | 169 | 10 | 4 | 264 | 2 | 277 | 4.22e-26 | 105 |
| Msa0583850 | MtrunA17_Chr1g0163131 | 30.634 | 284 | 164 | 11 | 2 | 267 | 32 | 300 | 2.14e-24 | 100 |
| Msa0583850 | MtrunA17_Chr6g0467361 | 63.291 | 79 | 25 | 3 | 197 | 272 | 7 | 84 | 2.70e-23 | 91.7 |
| Msa0583850 | MtrunA17_Chr1g0163251 | 29.693 | 293 | 174 | 10 | 2 | 284 | 19 | 289 | 3.06e-23 | 98.6 |
| Msa0583850 | MtrunA17_Chr1g0163201 | 26.357 | 387 | 185 | 12 | 4 | 303 | 19 | 392 | 8.62e-23 | 97.4 |
| Msa0583850 | MtrunA17_Chr7g0233561 | 28.369 | 282 | 164 | 10 | 2 | 260 | 32 | 298 | 1.89e-22 | 95.5 |
| Msa0583850 | MtrunA17_Chr1g0163181 | 28.070 | 285 | 176 | 11 | 2 | 271 | 19 | 289 | 5.96e-22 | 95.5 |
| Msa0583850 | MtrunA17_Chr1g0163261 | 28.826 | 281 | 165 | 11 | 2 | 271 | 23 | 279 | 2.04e-20 | 89.4 |
| Msa0583850 | MtrunA17_Chr7g0233541 | 28.058 | 278 | 166 | 9 | 4 | 260 | 2 | 266 | 3.00e-20 | 89.0 |
| Msa0583850 | MtrunA17_Chr7g0233521 | 27.376 | 263 | 170 | 6 | 4 | 260 | 2 | 249 | 9.97e-20 | 87.0 |
| Msa0583850 | MtrunA17_Chr1g0163231 | 27.796 | 313 | 170 | 11 | 2 | 298 | 23 | 295 | 1.45e-19 | 87.0 |
| Msa0583850 | MtrunA17_Chr3g0103171 | 26.950 | 282 | 167 | 9 | 4 | 271 | 6 | 262 | 2.63e-19 | 85.5 |
| Msa0583850 | MtrunA17_Chr3g0103181 | 26.667 | 285 | 162 | 11 | 2 | 271 | 24 | 276 | 3.60e-19 | 85.5 |
| Msa0583850 | MtrunA17_Chr8g0390841 | 25.091 | 275 | 186 | 8 | 2 | 263 | 53 | 320 | 4.17e-19 | 87.4 |
| Msa0583850 | MtrunA17_Chr1g0171611 | 28.358 | 268 | 150 | 9 | 2 | 262 | 23 | 255 | 1.08e-18 | 84.3 |
| Msa0583850 | MtrunA17_Chr3g0131891 | 27.574 | 272 | 169 | 9 | 2 | 260 | 33 | 289 | 2.74e-18 | 84.0 |
| Msa0583850 | MtrunA17_Chr7g0233531 | 27.138 | 269 | 163 | 7 | 4 | 260 | 2 | 249 | 1.41e-16 | 78.2 |
| Msa0583850 | MtrunA17_Chr3g0103191 | 25.105 | 239 | 142 | 7 | 2 | 229 | 24 | 236 | 6.97e-15 | 73.2 |
| Msa0583850 | MtrunA17_Chr1g0163121 | 34.109 | 129 | 66 | 5 | 1 | 114 | 8 | 132 | 7.80e-15 | 70.5 |
| Msa0583850 | MtrunA17_Chr6g0476181 | 39.316 | 117 | 58 | 6 | 4 | 112 | 2 | 113 | 2.09e-14 | 69.7 |
| Msa0583850 | MtrunA17_Chr1g0154151 | 25.424 | 295 | 175 | 10 | 1 | 260 | 17 | 301 | 4.08e-13 | 68.9 |
| Msa0583850 | MtrunA17_Chr1g0162161 | 31.098 | 164 | 88 | 7 | 1 | 148 | 1 | 155 | 4.28e-13 | 66.2 |
| Msa0583850 | MtrunA17_Chr1g0163081 | 39.604 | 101 | 51 | 5 | 4 | 99 | 6 | 101 | 5.40e-13 | 65.5 |
| Msa0583850 | MtrunA17_Chr5g0419201 | 43.421 | 76 | 42 | 1 | 4 | 79 | 32 | 106 | 9.37e-13 | 65.9 |
| Msa0583850 | MtrunA17_Chr1g0163101 | 31.333 | 150 | 76 | 6 | 2 | 135 | 31 | 169 | 4.13e-12 | 63.9 |
| Msa0583850 | MtrunA17_Chr7g0233571 | 36.364 | 99 | 57 | 2 | 2 | 95 | 24 | 121 | 3.92e-11 | 61.6 |
| Msa0583850 | MtrunA17_Chr3g0077451 | 25.091 | 275 | 142 | 9 | 1 | 267 | 9 | 227 | 5.90e-11 | 61.6 |
| Msa0583850 | MtrunA17_Chr1g0163241 | 30.469 | 128 | 80 | 4 | 4 | 126 | 23 | 146 | 6.25e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583850 | AT4G33280.1 | 22.997 | 287 | 169 | 6 | 2 | 258 | 37 | 301 | 2.10e-11 | 64.3 |
Find 35 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 4_2:+2653139 | None:intergenic |
| GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 4_2:-2653054 | Msa0583850:CDS |
| ATACCCTTTCACAAAACTTA+TGG | 0.236476 | 4_2:+2654328 | None:intergenic |
| TTTGGAAACCTTAGAGTAAC+TGG | 0.248158 | 4_2:+2654287 | None:intergenic |
| AAGTAGATGTAATGATATTA+AGG | 0.313447 | 4_2:-2653757 | Msa0583850:CDS |
| GTCTTTAATGTGATTGTATT+CGG | 0.330391 | 4_2:-2654128 | Msa0583850:intron |
| TACTCTAAGGTTTCCAAACT+TGG | 0.337891 | 4_2:-2654282 | Msa0583850:CDS |
| TACCCTTTCACAAAACTTAT+GGG | 0.353755 | 4_2:+2654329 | None:intergenic |
| ATCAACTCAAATGAACAAAA+AGG | 0.361386 | 4_2:-2653948 | Msa0583850:CDS |
| TAACAAACCCAGTTACTCTA+AGG | 0.363012 | 4_2:-2654295 | Msa0583850:CDS |
| GAAGGGGTGTGAATTGAAAA+AGG | 0.365970 | 4_2:-2652816 | Msa0583850:CDS |
| ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 4_2:+2653058 | None:intergenic |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 4_2:+2652988 | None:intergenic |
| TGTGTCTTAACAAATTCATT+TGG | 0.418287 | 4_2:+2653195 | None:intergenic |
| CTTCACTAGTTTCTCTTGAC+GGG | 0.451754 | 4_2:+2654081 | None:intergenic |
| TGAGAATCCTTCGTCATCAC+GGG | 0.459175 | 4_2:-2654024 | Msa0583850:CDS |
| ATACATTGATAGAGATCTCT+TGG | 0.475972 | 4_2:-2653652 | Msa0583850:intron |
| TCTAAGGTTTCCAAACTTGG+TGG | 0.476134 | 4_2:-2654279 | Msa0583850:CDS |
| TCTTCACTAGTTTCTCTTGA+CGG | 0.480853 | 4_2:+2654080 | None:intergenic |
| GGGTTGGCTTGAATTTGTGA+AGG | 0.482974 | 4_2:-2652834 | Msa0583850:CDS |
| CGATACTTGCCTATTGAAGA+TGG | 0.484152 | 4_2:-2652792 | Msa0583850:CDS |
| CACACTTTCATAGACGGTGC+TGG | 0.484435 | 4_2:+2653984 | None:intergenic |
| GGTTGGCTTGAATTTGTGAA+GGG | 0.512460 | 4_2:-2652833 | Msa0583850:CDS |
| TTGAGAATCCTTCGTCATCA+CGG | 0.526374 | 4_2:-2654025 | Msa0583850:CDS |
| TTCTTACACACTTTCATAGA+CGG | 0.530584 | 4_2:+2653978 | None:intergenic |
| TTTGTGAAAGGGTATTGGAA+AGG | 0.537911 | 4_2:-2654320 | Msa0583850:CDS |
| TGAATTTGTTAAGACACATA+CGG | 0.571400 | 4_2:-2653190 | Msa0583850:CDS |
| AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 4_2:-2653089 | Msa0583850:CDS |
| GTTGGCTTGAATTTGTGAAG+GGG | 0.584037 | 4_2:-2652832 | Msa0583850:CDS |
| TAAGACACATACGGACATGA+TGG | 0.586254 | 4_2:-2653181 | Msa0583850:CDS |
| AAACAATCTGCACTAACTTG+TGG | 0.589005 | 4_2:-2653093 | Msa0583850:CDS |
| TTGGAAACCTTAGAGTAACT+GGG | 0.594864 | 4_2:+2654288 | None:intergenic |
| AAGGATCTAATCATGAGAAG+AGG | 0.617388 | 4_2:-2653929 | Msa0583850:CDS |
| ACACATACGGACATGATGGA+AGG | 0.632477 | 4_2:-2653177 | Msa0583850:CDS |
| GAGAATCCTTCGTCATCACG+GGG | 0.717191 | 4_2:-2654023 | Msa0583850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTGTCTTATTTTAT+AGG | - | chr4_2:2653345-2653364 | Msa0583850:intron | 10.0% |
| !! | TATGATTTATGAAAAATTTA+TGG | - | chr4_2:2654260-2654279 | Msa0583850:CDS | 10.0% |
| !!! | TATTTTTTGTCTTATTTTAT+AGG | - | chr4_2:2653345-2653364 | Msa0583850:intron | 10.0% |
| !! | TATGATTTATGAAAAATTTA+TGG | - | chr4_2:2654260-2654279 | Msa0583850:CDS | 10.0% |
| !! | AATATAAAAAAGTCTCATTA+TGG | + | chr4_2:2653734-2653753 | None:intergenic | 15.0% |
| !!! | TGAAATTATTAATCTAAAAC+AGG | - | chr4_2:2653948-2653967 | Msa0583850:CDS | 15.0% |
| !! | AATATAAAAAAGTCTCATTA+TGG | + | chr4_2:2653734-2653753 | None:intergenic | 15.0% |
| !!! | TGAAATTATTAATCTAAAAC+AGG | - | chr4_2:2653948-2653967 | Msa0583850:CDS | 15.0% |
| !!! | TATGATGTTACATTTTTCAA+TGG | - | chr4_2:2652947-2652966 | Msa0583850:intron | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | - | chr4_2:2652997-2653016 | Msa0583850:intron | 20.0% |
| !! | AAGTAGATGTAATGATATTA+AGG | - | chr4_2:2653414-2653433 | Msa0583850:intron | 20.0% |
| !!! | TGATCACTTTTATTTTTGAA+AGG | - | chr4_2:2653559-2653578 | Msa0583850:intron | 20.0% |
| !! | TTCAAGATAAAGTAGTTAAA+TGG | + | chr4_2:2653932-2653951 | None:intergenic | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | + | chr4_2:2654034-2654053 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | + | chr4_2:2654035-2654054 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | - | chr4_2:2654034-2654053 | Msa0583850:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | + | chr4_2:2654116-2654135 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | - | chr4_2:2654117-2654136 | Msa0583850:intron | 20.0% |
| !! | CAATATAATAATTCATGTGT+TGG | - | chr4_2:2654305-2654324 | Msa0583850:CDS | 20.0% |
| !!! | TATGATGTTACATTTTTCAA+TGG | - | chr4_2:2652947-2652966 | Msa0583850:intron | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | - | chr4_2:2652997-2653016 | Msa0583850:intron | 20.0% |
| !! | AAGTAGATGTAATGATATTA+AGG | - | chr4_2:2653414-2653433 | Msa0583850:intron | 20.0% |
| !!! | TGATCACTTTTATTTTTGAA+AGG | - | chr4_2:2653559-2653578 | Msa0583850:intron | 20.0% |
| !! | TTCAAGATAAAGTAGTTAAA+TGG | + | chr4_2:2653932-2653951 | None:intergenic | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | + | chr4_2:2654034-2654053 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | + | chr4_2:2654035-2654054 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | - | chr4_2:2654034-2654053 | Msa0583850:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | + | chr4_2:2654116-2654135 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | - | chr4_2:2654117-2654136 | Msa0583850:intron | 20.0% |
| !! | CAATATAATAATTCATGTGT+TGG | - | chr4_2:2654305-2654324 | Msa0583850:CDS | 20.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | - | chr4_2:2653043-2653062 | Msa0583850:CDS | 25.0% |
| ! | ATCAACTCAAATGAACAAAA+AGG | - | chr4_2:2653223-2653242 | Msa0583850:intron | 25.0% |
| !!! | GTGTTGCTACTAATTTTTTT+TGG | - | chr4_2:2653367-2653386 | Msa0583850:intron | 25.0% |
| !!! | GAATTCTCAATTTTTTTAGC+AGG | - | chr4_2:2653391-2653410 | Msa0583850:intron | 25.0% |
| ! | CAAAAAATTTCTTCACTTTC+TGG | + | chr4_2:2653459-2653478 | None:intergenic | 25.0% |
| ! | GATAATGTTCACATATATTC+AGG | + | chr4_2:2653614-2653633 | None:intergenic | 25.0% |
| ! | CTATTCTTTGATGAGATTAA+TGG | - | chr4_2:2653665-2653684 | Msa0583850:CDS | 25.0% |
| ! | AGTCTCATTATGGTATAATT+TGG | + | chr4_2:2653724-2653743 | None:intergenic | 25.0% |
| !! | AAATGTATGTGTGTATTGAT+AGG | - | chr4_2:2653894-2653913 | Msa0583850:CDS | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | + | chr4_2:2653979-2653998 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTAAGACACATA+CGG | - | chr4_2:2653981-2654000 | Msa0583850:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | + | chr4_2:2654186-2654205 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | - | chr4_2:2654188-2654207 | Msa0583850:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | - | chr4_2:2654194-2654213 | Msa0583850:CDS | 25.0% |
| !!! | TTGAAAACTCCTTATTTTGA+AGG | - | chr4_2:2654219-2654238 | Msa0583850:CDS | 25.0% |
| ! | CCAATATTACCTTCAAAATA+AGG | + | chr4_2:2654231-2654250 | None:intergenic | 25.0% |
| !!! | CCTTATTTTGAAGGTAATAT+TGG | - | chr4_2:2654228-2654247 | Msa0583850:CDS | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | - | chr4_2:2653043-2653062 | Msa0583850:CDS | 25.0% |
| ! | ATCAACTCAAATGAACAAAA+AGG | - | chr4_2:2653223-2653242 | Msa0583850:intron | 25.0% |
| !!! | GTGTTGCTACTAATTTTTTT+TGG | - | chr4_2:2653367-2653386 | Msa0583850:intron | 25.0% |
| !!! | GAATTCTCAATTTTTTTAGC+AGG | - | chr4_2:2653391-2653410 | Msa0583850:intron | 25.0% |
| ! | CAAAAAATTTCTTCACTTTC+TGG | + | chr4_2:2653459-2653478 | None:intergenic | 25.0% |
| ! | GATAATGTTCACATATATTC+AGG | + | chr4_2:2653614-2653633 | None:intergenic | 25.0% |
| ! | CTATTCTTTGATGAGATTAA+TGG | - | chr4_2:2653665-2653684 | Msa0583850:CDS | 25.0% |
| ! | AGTCTCATTATGGTATAATT+TGG | + | chr4_2:2653724-2653743 | None:intergenic | 25.0% |
| !! | AAATGTATGTGTGTATTGAT+AGG | - | chr4_2:2653894-2653913 | Msa0583850:CDS | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | + | chr4_2:2653979-2653998 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTAAGACACATA+CGG | - | chr4_2:2653981-2654000 | Msa0583850:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | + | chr4_2:2654186-2654205 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | - | chr4_2:2654188-2654207 | Msa0583850:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | - | chr4_2:2654194-2654213 | Msa0583850:CDS | 25.0% |
| !!! | TTGAAAACTCCTTATTTTGA+AGG | - | chr4_2:2654219-2654238 | Msa0583850:CDS | 25.0% |
| ! | CCAATATTACCTTCAAAATA+AGG | + | chr4_2:2654231-2654250 | None:intergenic | 25.0% |
| !!! | CCTTATTTTGAAGGTAATAT+TGG | - | chr4_2:2654228-2654247 | Msa0583850:CDS | 25.0% |
| TACCCTTTCACAAAACTTAT+GGG | + | chr4_2:2652845-2652864 | None:intergenic | 30.0% | |
| ATACCCTTTCACAAAACTTA+TGG | + | chr4_2:2652846-2652865 | None:intergenic | 30.0% | |
| !! | TAAGTTTTGTGAAAGGGTAT+TGG | - | chr4_2:2652846-2652865 | Msa0583850:intron | 30.0% |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | - | chr4_2:2652909-2652928 | Msa0583850:intron | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | - | chr4_2:2652910-2652929 | Msa0583850:intron | 30.0% |
| !! | ATGTTACATTTTTCAATGGC+TGG | - | chr4_2:2652951-2652970 | Msa0583850:intron | 30.0% |
| TTCTTACACACTTTCATAGA+CGG | + | chr4_2:2653196-2653215 | None:intergenic | 30.0% | |
| GCTCAAAAACATGAAATCTA+GGG | + | chr4_2:2653273-2653292 | None:intergenic | 30.0% | |
| TGCTCAAAAACATGAAATCT+AGG | + | chr4_2:2653274-2653293 | None:intergenic | 30.0% | |
| ATACATTGATAGAGATCTCT+TGG | - | chr4_2:2653519-2653538 | Msa0583850:intron | 30.0% | |
| CCAATCACAATCTATTATGT+AGG | + | chr4_2:2653781-2653800 | None:intergenic | 30.0% | |
| CCTACATAATAGATTGTGAT+TGG | - | chr4_2:2653778-2653797 | Msa0583850:intron | 30.0% | |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | - | chr4_2:2654147-2654166 | Msa0583850:CDS | 30.0% |
| TACCCTTTCACAAAACTTAT+GGG | + | chr4_2:2652845-2652864 | None:intergenic | 30.0% | |
| ATACCCTTTCACAAAACTTA+TGG | + | chr4_2:2652846-2652865 | None:intergenic | 30.0% | |
| !! | TAAGTTTTGTGAAAGGGTAT+TGG | - | chr4_2:2652846-2652865 | Msa0583850:intron | 30.0% |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | - | chr4_2:2652909-2652928 | Msa0583850:intron | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | - | chr4_2:2652910-2652929 | Msa0583850:intron | 30.0% |
| !! | ATGTTACATTTTTCAATGGC+TGG | - | chr4_2:2652951-2652970 | Msa0583850:intron | 30.0% |
| TTCTTACACACTTTCATAGA+CGG | + | chr4_2:2653196-2653215 | None:intergenic | 30.0% | |
| GCTCAAAAACATGAAATCTA+GGG | + | chr4_2:2653273-2653292 | None:intergenic | 30.0% | |
| TGCTCAAAAACATGAAATCT+AGG | + | chr4_2:2653274-2653293 | None:intergenic | 30.0% | |
| ATACATTGATAGAGATCTCT+TGG | - | chr4_2:2653519-2653538 | Msa0583850:intron | 30.0% | |
| CCAATCACAATCTATTATGT+AGG | + | chr4_2:2653781-2653800 | None:intergenic | 30.0% | |
| CCTACATAATAGATTGTGAT+TGG | - | chr4_2:2653778-2653797 | Msa0583850:intron | 30.0% | |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | - | chr4_2:2654147-2654166 | Msa0583850:CDS | 30.0% |
| !! | TGCCCATAAGTTTTGTGAAA+GGG | - | chr4_2:2652840-2652859 | Msa0583850:intron | 35.0% |
| !! | TTTGTGAAAGGGTATTGGAA+AGG | - | chr4_2:2652851-2652870 | Msa0583850:intron | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | - | chr4_2:2652876-2652895 | Msa0583850:intron | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | + | chr4_2:2652886-2652905 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | + | chr4_2:2652887-2652906 | None:intergenic | 35.0% | |
| !! | TACTCTAAGGTTTCCAAACT+TGG | - | chr4_2:2652889-2652908 | Msa0583850:intron | 35.0% |
| ! | ACTTTCTTTTCCACCAAGTT+TGG | + | chr4_2:2652905-2652924 | None:intergenic | 35.0% |
| ! | TCTTCACTAGTTTCTCTTGA+CGG | + | chr4_2:2653094-2653113 | None:intergenic | 35.0% |
| AAGGATCTAATCATGAGAAG+AGG | - | chr4_2:2653242-2653261 | Msa0583850:intron | 35.0% | |
| !! | GTTTTTGAGCATGTGAACAA+TGG | - | chr4_2:2653283-2653302 | Msa0583850:intron | 35.0% |
| AAACAATCTGCACTAACTTG+TGG | - | chr4_2:2654078-2654097 | Msa0583850:CDS | 35.0% | |
| ! | AAGGGGTGTGAATTGAAAAA+GGG | - | chr4_2:2654356-2654375 | Msa0583850:intron | 35.0% |
| ! | GCTTTTCAACCATCTTCAAT+AGG | + | chr4_2:2654391-2654410 | None:intergenic | 35.0% |
| !! | TGCCCATAAGTTTTGTGAAA+GGG | - | chr4_2:2652840-2652859 | Msa0583850:intron | 35.0% |
| !! | TTTGTGAAAGGGTATTGGAA+AGG | - | chr4_2:2652851-2652870 | Msa0583850:intron | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | - | chr4_2:2652876-2652895 | Msa0583850:intron | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | + | chr4_2:2652886-2652905 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | + | chr4_2:2652887-2652906 | None:intergenic | 35.0% | |
| !! | TACTCTAAGGTTTCCAAACT+TGG | - | chr4_2:2652889-2652908 | Msa0583850:intron | 35.0% |
| ! | ACTTTCTTTTCCACCAAGTT+TGG | + | chr4_2:2652905-2652924 | None:intergenic | 35.0% |
| ! | TCTTCACTAGTTTCTCTTGA+CGG | + | chr4_2:2653094-2653113 | None:intergenic | 35.0% |
| AAGGATCTAATCATGAGAAG+AGG | - | chr4_2:2653242-2653261 | Msa0583850:intron | 35.0% | |
| !! | GTTTTTGAGCATGTGAACAA+TGG | - | chr4_2:2653283-2653302 | Msa0583850:intron | 35.0% |
| AAACAATCTGCACTAACTTG+TGG | - | chr4_2:2654078-2654097 | Msa0583850:CDS | 35.0% | |
| ! | AAGGGGTGTGAATTGAAAAA+GGG | - | chr4_2:2654356-2654375 | Msa0583850:intron | 35.0% |
| ! | GCTTTTCAACCATCTTCAAT+AGG | + | chr4_2:2654391-2654410 | None:intergenic | 35.0% |
| !! | GTGCCCATAAGTTTTGTGAA+AGG | - | chr4_2:2652839-2652858 | Msa0583850:intron | 40.0% |
| ! | TCTAAGGTTTCCAAACTTGG+TGG | - | chr4_2:2652892-2652911 | Msa0583850:intron | 40.0% |
| GTGATTGTATTCGGTAGATG+CGG | - | chr4_2:2653052-2653071 | Msa0583850:CDS | 40.0% | |
| ! | CTTCACTAGTTTCTCTTGAC+GGG | + | chr4_2:2653093-2653112 | None:intergenic | 40.0% |
| TTGAGAATCCTTCGTCATCA+CGG | - | chr4_2:2653146-2653165 | Msa0583850:CDS | 40.0% | |
| TTGAGCATGTGAACAATGGT+TGG | - | chr4_2:2653287-2653306 | Msa0583850:intron | 40.0% | |
| TAAGACACATACGGACATGA+TGG | - | chr4_2:2653990-2654009 | Msa0583850:CDS | 40.0% | |
| ! | AATCTGCACTAACTTGTGGT+TGG | - | chr4_2:2654082-2654101 | Msa0583850:CDS | 40.0% |
| TTCATGTGTTGGACTATTGC+AGG | - | chr4_2:2654316-2654335 | Msa0583850:CDS | 40.0% | |
| TCATGTGTTGGACTATTGCA+GGG | - | chr4_2:2654317-2654336 | Msa0583850:CDS | 40.0% | |
| !! | GGTTGGCTTGAATTTGTGAA+GGG | - | chr4_2:2654338-2654357 | Msa0583850:CDS | 40.0% |
| !! | GTTGGCTTGAATTTGTGAAG+GGG | - | chr4_2:2654339-2654358 | Msa0583850:intron | 40.0% |
| ! | GAAGGGGTGTGAATTGAAAA+AGG | - | chr4_2:2654355-2654374 | Msa0583850:intron | 40.0% |
| CGATACTTGCCTATTGAAGA+TGG | - | chr4_2:2654379-2654398 | Msa0583850:intron | 40.0% | |
| !! | GTGCCCATAAGTTTTGTGAA+AGG | - | chr4_2:2652839-2652858 | Msa0583850:intron | 40.0% |
| ! | TCTAAGGTTTCCAAACTTGG+TGG | - | chr4_2:2652892-2652911 | Msa0583850:intron | 40.0% |
| GTGATTGTATTCGGTAGATG+CGG | - | chr4_2:2653052-2653071 | Msa0583850:CDS | 40.0% | |
| ! | CTTCACTAGTTTCTCTTGAC+GGG | + | chr4_2:2653093-2653112 | None:intergenic | 40.0% |
| TTGAGAATCCTTCGTCATCA+CGG | - | chr4_2:2653146-2653165 | Msa0583850:CDS | 40.0% | |
| TTGAGCATGTGAACAATGGT+TGG | - | chr4_2:2653287-2653306 | Msa0583850:intron | 40.0% | |
| TAAGACACATACGGACATGA+TGG | - | chr4_2:2653990-2654009 | Msa0583850:CDS | 40.0% | |
| ! | AATCTGCACTAACTTGTGGT+TGG | - | chr4_2:2654082-2654101 | Msa0583850:CDS | 40.0% |
| TTCATGTGTTGGACTATTGC+AGG | - | chr4_2:2654316-2654335 | Msa0583850:CDS | 40.0% | |
| TCATGTGTTGGACTATTGCA+GGG | - | chr4_2:2654317-2654336 | Msa0583850:CDS | 40.0% | |
| !! | GGTTGGCTTGAATTTGTGAA+GGG | - | chr4_2:2654338-2654357 | Msa0583850:CDS | 40.0% |
| !! | GTTGGCTTGAATTTGTGAAG+GGG | - | chr4_2:2654339-2654358 | Msa0583850:intron | 40.0% |
| ! | GAAGGGGTGTGAATTGAAAA+AGG | - | chr4_2:2654355-2654374 | Msa0583850:intron | 40.0% |
| CGATACTTGCCTATTGAAGA+TGG | - | chr4_2:2654379-2654398 | Msa0583850:intron | 40.0% | |
| TGAGAATCCTTCGTCATCAC+GGG | - | chr4_2:2653147-2653166 | Msa0583850:CDS | 45.0% | |
| !! | TTTTTACCCCGTGATGACGA+AGG | + | chr4_2:2653157-2653176 | None:intergenic | 45.0% |
| ! | ACACATACGGACATGATGGA+AGG | - | chr4_2:2653994-2654013 | Msa0583850:CDS | 45.0% |
| !! | GGGTTGGCTTGAATTTGTGA+AGG | - | chr4_2:2654337-2654356 | Msa0583850:CDS | 45.0% |
| TGAGAATCCTTCGTCATCAC+GGG | - | chr4_2:2653147-2653166 | Msa0583850:CDS | 45.0% | |
| !! | TTTTTACCCCGTGATGACGA+AGG | + | chr4_2:2653157-2653176 | None:intergenic | 45.0% |
| ! | ACACATACGGACATGATGGA+AGG | - | chr4_2:2653994-2654013 | Msa0583850:CDS | 45.0% |
| !! | GGGTTGGCTTGAATTTGTGA+AGG | - | chr4_2:2654337-2654356 | Msa0583850:CDS | 45.0% |
| GAGAATCCTTCGTCATCACG+GGG | - | chr4_2:2653148-2653167 | Msa0583850:CDS | 50.0% | |
| CACACTTTCATAGACGGTGC+TGG | + | chr4_2:2653190-2653209 | None:intergenic | 50.0% | |
| GTGTTGGACTATTGCAGGGT+TGG | - | chr4_2:2654321-2654340 | Msa0583850:CDS | 50.0% | |
| GAGAATCCTTCGTCATCACG+GGG | - | chr4_2:2653148-2653167 | Msa0583850:CDS | 50.0% | |
| CACACTTTCATAGACGGTGC+TGG | + | chr4_2:2653190-2653209 | None:intergenic | 50.0% | |
| GTGTTGGACTATTGCAGGGT+TGG | - | chr4_2:2654321-2654340 | Msa0583850:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 2652751 | 2654442 | 2652751 | ID=Msa0583850;Name=Msa0583850 |
| chr4_2 | mRNA | 2652751 | 2654442 | 2652751 | ID=Msa0583850-mRNA-1;Parent=Msa0583850;Name=Msa0583850-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.83|0.4|0.33|6|0|305 |
| chr4_2 | exon | 2654437 | 2654442 | 2654437 | ID=Msa0583850-mRNA-1:exon:774;Parent=Msa0583850-mRNA-1 |
| chr4_2 | exon | 2654129 | 2654357 | 2654129 | ID=Msa0583850-mRNA-1:exon:773;Parent=Msa0583850-mRNA-1 |
| chr4_2 | exon | 2653889 | 2654113 | 2653889 | ID=Msa0583850-mRNA-1:exon:772;Parent=Msa0583850-mRNA-1 |
| chr4_2 | exon | 2653653 | 2653780 | 2653653 | ID=Msa0583850-mRNA-1:exon:771;Parent=Msa0583850-mRNA-1 |
| chr4_2 | exon | 2652999 | 2653223 | 2652999 | ID=Msa0583850-mRNA-1:exon:770;Parent=Msa0583850-mRNA-1 |
| chr4_2 | exon | 2652751 | 2652855 | 2652751 | ID=Msa0583850-mRNA-1:exon:769;Parent=Msa0583850-mRNA-1 |
| chr4_2 | CDS | 2654437 | 2654442 | 2654437 | ID=Msa0583850-mRNA-1:cds;Parent=Msa0583850-mRNA-1 |
| chr4_2 | CDS | 2654129 | 2654357 | 2654129 | ID=Msa0583850-mRNA-1:cds;Parent=Msa0583850-mRNA-1 |
| chr4_2 | CDS | 2653889 | 2654113 | 2653889 | ID=Msa0583850-mRNA-1:cds;Parent=Msa0583850-mRNA-1 |
| chr4_2 | CDS | 2653653 | 2653780 | 2653653 | ID=Msa0583850-mRNA-1:cds;Parent=Msa0583850-mRNA-1 |
| chr4_2 | CDS | 2652999 | 2653223 | 2652999 | ID=Msa0583850-mRNA-1:cds;Parent=Msa0583850-mRNA-1 |
| chr4_2 | CDS | 2652751 | 2652855 | 2652751 | ID=Msa0583850-mRNA-1:cds;Parent=Msa0583850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
