AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0583880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0583880 MtrunA17_Chr1g0163261 75.000 296 33 2 1 255 1 296 4.52e-148 420
Msa0583880 MtrunA17_Chr1g0163201 46.402 403 137 9 24 366 18 401 3.34e-105 315
Msa0583880 MtrunA17_Chr1g0163181 42.177 441 175 10 1 365 1 437 2.23e-104 314
Msa0583880 MtrunA17_Chr1g0163231 48.299 294 89 9 1 244 1 281 1.41e-76 238
Msa0583880 MtrunA17_Chr1g0171611 46.316 285 96 8 1 244 1 269 1.32e-64 207
Msa0583880 MtrunA17_Chr1g0163251 41.892 296 124 6 1 253 1 291 8.25e-63 206
Msa0583880 MtrunA17_Chr1g0163151 44.351 239 83 5 152 358 2 222 1.25e-57 187
Msa0583880 MtrunA17_Chr1g0163111 49.462 186 86 2 179 359 48 230 5.88e-56 182
Msa0583880 MtrunA17_Chr6g0476171 38.735 253 100 6 147 357 6 245 4.94e-44 152
Msa0583880 MtrunA17_Chr1g0162151 41.243 177 77 4 180 356 57 206 6.50e-33 122
Msa0583880 MtrunA17_Chr1g0163241 48.936 141 53 4 24 145 22 162 6.78e-33 120
Msa0583880 MtrunA17_Chr1g0163191 53.261 92 33 1 18 99 14 105 1.47e-26 103
Msa0583880 MtrunA17_Chr3g0131891 26.159 302 152 9 6 246 16 307 1.09e-19 89.0
Msa0583880 MtrunA17_Chr1g0163131 49.038 104 43 4 260 359 211 308 2.42e-19 87.4
Msa0583880 MtrunA17_Chr1g0163131 23.986 296 163 9 5 241 14 306 4.54e-17 80.9
Msa0583880 MtrunA17_Chr1g0163101 36.943 157 76 5 9 145 17 170 2.99e-19 84.3
Msa0583880 MtrunA17_Chr7g0233571 31.461 178 108 3 4 169 5 180 1.25e-18 84.0
Msa0583880 MtrunA17_Chr8g0390841 23.967 363 191 11 8 356 38 329 1.28e-18 87.0
Msa0583880 MtrunA17_Chr1g0163091 39.844 128 50 2 153 253 3 130 2.11e-18 81.6
Msa0583880 MtrunA17_Chr1g0163221 24.250 400 197 14 9 356 11 356 2.99e-18 85.1
Msa0583880 MtrunA17_Chr1g0162161 36.301 146 62 5 25 145 4 143 1.07e-17 79.7
Msa0583880 MtrunA17_Chr7g0233561 35.075 134 75 1 6 127 15 148 1.20e-17 82.8
Msa0583880 MtrunA17_Chr4g0067431 25.510 294 142 10 9 232 15 301 1.39e-16 79.7
Msa0583880 MtrunA17_Chr5g0419201 37.037 108 56 2 3 98 10 117 1.52e-15 74.3
Msa0583880 MtrunA17_Chr7g0233521 26.690 281 124 8 25 242 2 263 2.22e-15 75.5
Msa0583880 MtrunA17_Chr3g0103151 35.433 127 63 4 6 120 9 128 4.83e-14 69.3
Msa0583880 MtrunA17_Chr3g0103191 36.667 120 61 4 6 112 9 126 8.31e-14 70.5
Msa0583880 MtrunA17_Chr6g0467351 33.333 132 69 4 9 127 15 140 2.78e-13 68.9
Msa0583880 MtrunA17_Chr1g0163081 33.813 139 70 4 25 145 6 140 4.47e-13 66.2
Msa0583880 MtrunA17_Chr1g0163121 42.529 87 39 2 23 99 9 94 5.92e-13 65.9
Msa0583880 MtrunA17_Chr1g0163141 29.012 162 75 5 23 145 9 169 6.58e-13 66.6
Msa0583880 MtrunA17_Chr6g0476181 33.333 123 71 2 25 137 2 123 2.79e-12 64.3
Msa0583880 MtrunA17_Chr7g0233541 24.011 354 170 12 25 356 2 278 4.08e-12 66.2
Msa0583880 MtrunA17_Chr3g0103181 33.981 103 54 2 6 96 9 109 4.17e-11 63.2
Msa0583880 MtrunA17_Chr7g0233531 32.174 115 66 2 25 127 2 116 8.91e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 50 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCTAAACAAGATGTATTT+TGG 0.183994 4_2:-2702782 Msa0583880:CDS
TTCAGCTTCAACCTTTATAT+TGG 0.225744 4_2:+2702608 None:intergenic
TGTTTCAAAGTTGAAATATT+TGG 0.227189 4_2:-2702657 Msa0583880:CDS
GTGTTTAATGTTTCAATTGT+AGG 0.249847 4_2:-2700765 Msa0583880:CDS
TGTAGCTCCACAAAATATTT+AGG 0.280715 4_2:+2702849 None:intergenic
GAAAAGGTGGCAAGAGAAAA+AGG 0.281037 4_2:-2702521 Msa0583880:CDS
ACAAGAGATAAAACAGCTAA+TGG 0.319359 4_2:+2700735 None:intergenic
ACATCTTGTTTAGCACCATT+TGG 0.328942 4_2:+2702789 None:intergenic
AAGAGGATGTCATGAAAATT+TGG 0.332779 4_2:-2700949 Msa0583880:CDS
GCAAAGAGCAAAGACAATAA+AGG 0.337712 4_2:-2701475 Msa0583880:CDS
AATTATTATCGTAGTATTCA+TGG 0.337928 4_2:-2700885 Msa0583880:CDS
TGGAGCGTGACGGAGATATT+TGG 0.354418 4_2:-2702758 Msa0583880:CDS
ATAAAGGGACTTCAAGTTCT+AGG 0.354574 4_2:-2701459 Msa0583880:CDS
CAAAATCAAGAACTGCAAAA+TGG 0.354682 4_2:-2702995 Msa0583880:CDS
AATAAACTATTCCAATATAA+AGG 0.363838 4_2:-2702619 Msa0583880:CDS
AGCAAGAAATTATCATCCTT+TGG 0.369605 4_2:-2702301 Msa0583880:CDS
CATCTTGTTTAGCACCATTT+GGG 0.395094 4_2:+2702790 None:intergenic
CAAAGAGCAAAGACAATAAA+GGG 0.423420 4_2:-2701474 Msa0583880:CDS
ATCGTAGTATTCATGGTTGT+AGG 0.430779 4_2:-2700878 Msa0583880:CDS
AAAGAATGCAATGTGGAGAT+TGG 0.431673 4_2:-2700828 Msa0583880:CDS
CATGGTTGTAGGTTCTCTGC+AGG 0.437756 4_2:-2700867 Msa0583880:CDS
AAAATATATAATTTGAAACT+TGG 0.446327 4_2:-2701723 Msa0583880:CDS
CCAATGAAGTTTATGAAAAG+AGG 0.467022 4_2:-2700966 Msa0583880:CDS
CAAGAGATAAAACAGCTAAT+GGG 0.468737 4_2:+2700736 None:intergenic
AACTTTGCAGGTTGTAATAG+AGG 0.470896 4_2:-2702378 Msa0583880:intron
TTTGGGAGAGTAAAGACTAC+TGG 0.484305 4_2:+2702807 None:intergenic
GACAATGTTACTAATACTAA+TGG 0.484869 4_2:-2702564 Msa0583880:CDS
AGTACATCTCAAAGGAGAAA+AGG 0.489671 4_2:-2702537 Msa0583880:CDS
AATATTTGGTCGCAATACAT+TGG 0.491389 4_2:-2702643 Msa0583880:CDS
CTCCTCTCTTGCTCGAGTAA+TGG 0.510615 4_2:+2701647 None:intergenic
TTTAAGAAGTTGAAGTTGCA+AGG 0.514255 4_2:-2701618 Msa0583880:intron
GTTGTAGGTTCTCTGCAGGT+TGG 0.528959 4_2:-2700863 Msa0583880:CDS
ATGATCTTGAAGAACTTTCG+AGG 0.530699 4_2:+2703019 None:intergenic
ATGGTAATAGTGAATAAAAG+TGG 0.534500 4_2:+2701666 None:intergenic
GTAGTCTTTACTCTCCCAAA+TGG 0.552023 4_2:-2702804 Msa0583880:CDS
CATCTACTGTGACCACTGGT+TGG 0.552617 4_2:-2701758 Msa0583880:CDS
TAGAGGAGGCAAGATTAAGA+AGG 0.558763 4_2:-2702361 Msa0583880:CDS
AAATCATCTACTGTGACCAC+TGG 0.561649 4_2:-2701762 Msa0583880:CDS
AGGATGTCATGAAAATTTGG+TGG 0.562321 4_2:-2700946 Msa0583880:CDS
AACTTCAACTTCTTAAAGCT+AGG 0.570828 4_2:+2701624 None:intergenic
TACCATTACTCGAGCAAGAG+AGG 0.576066 4_2:-2701649 Msa0583880:CDS
TAATAGTGAATAAAAGTGGT+TGG 0.584021 4_2:+2701670 None:intergenic
TTCATCAACTCTAAATCTTG+CGG 0.597151 4_2:+2701827 None:intergenic
GCTAAATGACTTCCAACCAG+TGG 0.615117 4_2:+2701746 None:intergenic
TGATCTTGAAGAACTTTCGA+GGG 0.617342 4_2:+2703020 None:intergenic
ACATCTCAAAGGAGAAAAGG+TGG 0.624210 4_2:-2702534 Msa0583880:CDS
ATTTAGAGTTGATGAAGACA+TGG 0.625733 4_2:-2701820 Msa0583880:CDS
TTTGCAGGTTGTAATAGAGG+AGG 0.626297 4_2:-2702375 Msa0583880:intron
ATGGTGCTAGTACATCTCAA+AGG 0.644614 4_2:-2702545 Msa0583880:CDS
ATTCTTAAAAGAATGCAATG+TGG 0.699756 4_2:-2700835 Msa0583880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAATCCTTAAAAAAAA+AGG + chr4_2:2701774-2701793 None:intergenic 10.0%
!!! TTTTATAAAAGTGTAAAAAA+TGG - chr4_2:2701797-2701816 Msa0583880:CDS 10.0%
!!! AAAATATATAATTTGAAACT+TGG - chr4_2:2702042-2702061 Msa0583880:intron 10.0%
!! AAAAATCTCAAAATAATATA+TGG - chr4_2:2702543-2702562 Msa0583880:CDS 10.0%
!! AATATAATCCTTAAAAAAAA+AGG + chr4_2:2701774-2701793 None:intergenic 10.0%
!!! TTTTATAAAAGTGTAAAAAA+TGG - chr4_2:2701797-2701816 Msa0583880:CDS 10.0%
!!! AAAATATATAATTTGAAACT+TGG - chr4_2:2702042-2702061 Msa0583880:intron 10.0%
!! AAAAATCTCAAAATAATATA+TGG - chr4_2:2702543-2702562 Msa0583880:CDS 10.0%
!!! ATATTTGGTTTCAAAAAAAT+TGG - chr4_2:2701022-2701041 Msa0583880:intron 15.0%
!!! TATTTGGTTTCAAAAAAATT+GGG - chr4_2:2701023-2701042 Msa0583880:intron 15.0%
!!! GTTCTTGTTTTTAAATATAA+AGG - chr4_2:2701078-2701097 Msa0583880:intron 15.0%
!! AATAAACTATTCCAATATAA+AGG - chr4_2:2701146-2701165 Msa0583880:intron 15.0%
!!! ATTTTAAGCCTTTTTTTTTA+AGG - chr4_2:2701763-2701782 Msa0583880:CDS 15.0%
!!! TTTTTCTAACTTTAAAGTTT+TGG - chr4_2:2702360-2702379 Msa0583880:CDS 15.0%
!! TATTATCATTATGGATTTAT+TGG - chr4_2:2702584-2702603 Msa0583880:CDS 15.0%
!!! TTACTATGTAGATATTTTTT+TGG - chr4_2:2702652-2702671 Msa0583880:CDS 15.0%
!!! ATATTTGGTTTCAAAAAAAT+TGG - chr4_2:2701022-2701041 Msa0583880:intron 15.0%
!!! TATTTGGTTTCAAAAAAATT+GGG - chr4_2:2701023-2701042 Msa0583880:intron 15.0%
!!! GTTCTTGTTTTTAAATATAA+AGG - chr4_2:2701078-2701097 Msa0583880:intron 15.0%
!! AATAAACTATTCCAATATAA+AGG - chr4_2:2701146-2701165 Msa0583880:intron 15.0%
!!! ATTTTAAGCCTTTTTTTTTA+AGG - chr4_2:2701763-2701782 Msa0583880:CDS 15.0%
!!! TTTTTCTAACTTTAAAGTTT+TGG - chr4_2:2702360-2702379 Msa0583880:CDS 15.0%
!! TATTATCATTATGGATTTAT+TGG - chr4_2:2702584-2702603 Msa0583880:CDS 15.0%
!!! TTACTATGTAGATATTTTTT+TGG - chr4_2:2702652-2702671 Msa0583880:CDS 15.0%
!!! GAGTATTGAACATTTTTAAA+AGG + chr4_2:2700843-2700862 None:intergenic 20.0%
!!! AAACTATTTATTTGTTGTAG+AGG - chr4_2:2700890-2700909 Msa0583880:CDS 20.0%
!!! AACTATTTATTTGTTGTAGA+GGG - chr4_2:2700891-2700910 Msa0583880:CDS 20.0%
!!! CTTGTTTTTAAATATAAAGG+AGG - chr4_2:2701081-2701100 Msa0583880:intron 20.0%
!! TGTTTCAAAGTTGAAATATT+TGG - chr4_2:2701108-2701127 Msa0583880:intron 20.0%
!!! ACTTTCAAAATTTTCAAATC+TGG - chr4_2:2701551-2701570 Msa0583880:intron 20.0%
!! TTCTCTTAAATATTGTTGAT+AGG + chr4_2:2701722-2701741 None:intergenic 20.0%
!! GAGAAAATACTTGAAAAAAT+TGG - chr4_2:2701909-2701928 Msa0583880:intron 20.0%
!! AAATACTTGAAAAAATTGGA+AGG - chr4_2:2701913-2701932 Msa0583880:intron 20.0%
!! AATACTTGAAAAAATTGGAA+GGG - chr4_2:2701914-2701933 Msa0583880:intron 20.0%
!! ACAATAAAGGTTATAAAGAA+GGG - chr4_2:2702246-2702265 Msa0583880:intron 20.0%
!! ATTTCCTTCAATTATATGTT+TGG - chr4_2:2702407-2702426 Msa0583880:intron 20.0%
!! ACGATTAATTACATAGAATA+TGG - chr4_2:2702629-2702648 Msa0583880:CDS 20.0%
!! AATTATTATCGTAGTATTCA+TGG - chr4_2:2702880-2702899 Msa0583880:intron 20.0%
!!! GAGTATTGAACATTTTTAAA+AGG + chr4_2:2700843-2700862 None:intergenic 20.0%
!!! AAACTATTTATTTGTTGTAG+AGG - chr4_2:2700890-2700909 Msa0583880:CDS 20.0%
!!! AACTATTTATTTGTTGTAGA+GGG - chr4_2:2700891-2700910 Msa0583880:CDS 20.0%
!!! CTTGTTTTTAAATATAAAGG+AGG - chr4_2:2701081-2701100 Msa0583880:intron 20.0%
!! TGTTTCAAAGTTGAAATATT+TGG - chr4_2:2701108-2701127 Msa0583880:intron 20.0%
!!! ACTTTCAAAATTTTCAAATC+TGG - chr4_2:2701551-2701570 Msa0583880:intron 20.0%
!! TTCTCTTAAATATTGTTGAT+AGG + chr4_2:2701722-2701741 None:intergenic 20.0%
!! GAGAAAATACTTGAAAAAAT+TGG - chr4_2:2701909-2701928 Msa0583880:intron 20.0%
!! AAATACTTGAAAAAATTGGA+AGG - chr4_2:2701913-2701932 Msa0583880:intron 20.0%
!! AATACTTGAAAAAATTGGAA+GGG - chr4_2:2701914-2701933 Msa0583880:intron 20.0%
!! ACAATAAAGGTTATAAAGAA+GGG - chr4_2:2702246-2702265 Msa0583880:intron 20.0%
!! ATTTCCTTCAATTATATGTT+TGG - chr4_2:2702407-2702426 Msa0583880:intron 20.0%
!! ACGATTAATTACATAGAATA+TGG - chr4_2:2702629-2702648 Msa0583880:CDS 20.0%
!! AATTATTATCGTAGTATTCA+TGG - chr4_2:2702880-2702899 Msa0583880:intron 20.0%
!! TTTTGAATAAGCATAGTTGT+TGG + chr4_2:2700873-2700892 None:intergenic 25.0%
!! TGCTAAACAAGATGTATTTT+GGG - chr4_2:2700984-2701003 Msa0583880:intron 25.0%
! GACAATGTTACTAATACTAA+TGG - chr4_2:2701201-2701220 Msa0583880:intron 25.0%
! GCTAATCAGAAAAAAATCAA+AGG - chr4_2:2701282-2701301 Msa0583880:intron 25.0%
!!! TTTTTTATGTGTAACTTTGC+AGG - chr4_2:2701375-2701394 Msa0583880:intron 25.0%
! TAAGAGAAAACTCTCAAAAT+AGG - chr4_2:2701734-2701753 Msa0583880:CDS 25.0%
!! TATTTTCTCGAAAAATACCT+TGG + chr4_2:2701898-2701917 None:intergenic 25.0%
! TAATAGTGAATAAAAGTGGT+TGG + chr4_2:2702098-2702117 None:intergenic 25.0%
! ATGGTAATAGTGAATAAAAG+TGG + chr4_2:2702102-2702121 None:intergenic 25.0%
! TATTTGATCCTTGACAATAA+AGG - chr4_2:2702233-2702252 Msa0583880:intron 25.0%
! CTTTATAACCTTTATTGTCA+AGG + chr4_2:2702244-2702263 None:intergenic 25.0%
! GACAATAAAGGTTATAAAGA+AGG - chr4_2:2702245-2702264 Msa0583880:intron 25.0%
! ATGTCCAAACATATAATTGA+AGG + chr4_2:2702414-2702433 None:intergenic 25.0%
! TTCTATGTAATTAATCGTAC+CGG + chr4_2:2702627-2702646 None:intergenic 25.0%
!!! TAGATATTTTTTTGGTGCAA+TGG - chr4_2:2702660-2702679 Msa0583880:CDS 25.0%
! ACATTGTTCTTTATATATGC+AGG - chr4_2:2702771-2702790 Msa0583880:CDS 25.0%
!! AAATTTGGTGGAGTTAAAAA+TGG - chr4_2:2702831-2702850 Msa0583880:CDS 25.0%
!! AATTTGGTGGAGTTAAAAAT+GGG - chr4_2:2702832-2702851 Msa0583880:CDS 25.0%
! ATTCTTAAAAGAATGCAATG+TGG - chr4_2:2702930-2702949 Msa0583880:intron 25.0%
! GTGTTTAATGTTTCAATTGT+AGG - chr4_2:2703000-2703019 Msa0583880:CDS 25.0%
!! TTTTGAATAAGCATAGTTGT+TGG + chr4_2:2700873-2700892 None:intergenic 25.0%
!! TGCTAAACAAGATGTATTTT+GGG - chr4_2:2700984-2701003 Msa0583880:intron 25.0%
! GACAATGTTACTAATACTAA+TGG - chr4_2:2701201-2701220 Msa0583880:intron 25.0%
! GCTAATCAGAAAAAAATCAA+AGG - chr4_2:2701282-2701301 Msa0583880:intron 25.0%
!!! TTTTTTATGTGTAACTTTGC+AGG - chr4_2:2701375-2701394 Msa0583880:intron 25.0%
! TAAGAGAAAACTCTCAAAAT+AGG - chr4_2:2701734-2701753 Msa0583880:CDS 25.0%
!! TATTTTCTCGAAAAATACCT+TGG + chr4_2:2701898-2701917 None:intergenic 25.0%
! TAATAGTGAATAAAAGTGGT+TGG + chr4_2:2702098-2702117 None:intergenic 25.0%
! ATGGTAATAGTGAATAAAAG+TGG + chr4_2:2702102-2702121 None:intergenic 25.0%
! TATTTGATCCTTGACAATAA+AGG - chr4_2:2702233-2702252 Msa0583880:intron 25.0%
! CTTTATAACCTTTATTGTCA+AGG + chr4_2:2702244-2702263 None:intergenic 25.0%
! GACAATAAAGGTTATAAAGA+AGG - chr4_2:2702245-2702264 Msa0583880:intron 25.0%
! ATGTCCAAACATATAATTGA+AGG + chr4_2:2702414-2702433 None:intergenic 25.0%
! TTCTATGTAATTAATCGTAC+CGG + chr4_2:2702627-2702646 None:intergenic 25.0%
!!! TAGATATTTTTTTGGTGCAA+TGG - chr4_2:2702660-2702679 Msa0583880:CDS 25.0%
! ACATTGTTCTTTATATATGC+AGG - chr4_2:2702771-2702790 Msa0583880:CDS 25.0%
!! AAATTTGGTGGAGTTAAAAA+TGG - chr4_2:2702831-2702850 Msa0583880:CDS 25.0%
!! AATTTGGTGGAGTTAAAAAT+GGG - chr4_2:2702832-2702851 Msa0583880:CDS 25.0%
! ATTCTTAAAAGAATGCAATG+TGG - chr4_2:2702930-2702949 Msa0583880:intron 25.0%
! GTGTTTAATGTTTCAATTGT+AGG - chr4_2:2703000-2703019 Msa0583880:CDS 25.0%
CAAAATCAAGAACTGCAAAA+TGG - chr4_2:2700770-2700789 Msa0583880:CDS 30.0%
TGTAGCTCCACAAAATATTT+AGG + chr4_2:2700919-2700938 None:intergenic 30.0%
! AATATTTTGTGGAGCTACAT+TGG - chr4_2:2700920-2700939 Msa0583880:CDS 30.0%
! GTGCTAAACAAGATGTATTT+TGG - chr4_2:2700983-2701002 Msa0583880:intron 30.0%
!! TAAACAAGATGTATTTTGGG+TGG - chr4_2:2700987-2701006 Msa0583880:intron 30.0%
AATATTTGGTCGCAATACAT+TGG - chr4_2:2701122-2701141 Msa0583880:intron 30.0%
TTCAGCTTCAACCTTTATAT+TGG + chr4_2:2701160-2701179 None:intergenic 30.0%
AGCAAGAAATTATCATCCTT+TGG - chr4_2:2701464-2701483 Msa0583880:CDS 30.0%
GACATTTCAACTTCAAAACT+GGG + chr4_2:2701495-2701514 None:intergenic 30.0%
TGACATTTCAACTTCAAAAC+TGG + chr4_2:2701496-2701515 None:intergenic 30.0%
TTATGCCAAAGGATGTTATT+TGG - chr4_2:2701521-2701540 Msa0583880:intron 30.0%
ACATACCAAATAACATCCTT+TGG + chr4_2:2701529-2701548 None:intergenic 30.0%
AGAAACCAATATTGAAACAG+AGG - chr4_2:2701869-2701888 Msa0583880:intron 30.0%
TTCATCAACTCTAAATCTTG+CGG + chr4_2:2701941-2701960 None:intergenic 30.0%
!! ATTTAGAGTTGATGAAGACA+TGG - chr4_2:2701945-2701964 Msa0583880:intron 30.0%
AACTTCAACTTCTTAAAGCT+AGG + chr4_2:2702144-2702163 None:intergenic 30.0%
TTTAAGAAGTTGAAGTTGCA+AGG - chr4_2:2702147-2702166 Msa0583880:intron 30.0%
CAAAGAGCAAAGACAATAAA+GGG - chr4_2:2702291-2702310 Msa0583880:intron 30.0%
!! TTTGGACATTGTTTTTCCTT+TGG - chr4_2:2702425-2702444 Msa0583880:intron 30.0%
TCTATGTAATTAATCGTACC+GGG + chr4_2:2702626-2702645 None:intergenic 30.0%
!!! AGAGATGTTTGTTTTTTGAG+AGG - chr4_2:2702706-2702725 Msa0583880:intron 30.0%
!!! TGTTTTTTGAGAGGATAGAT+AGG - chr4_2:2702715-2702734 Msa0583880:intron 30.0%
! CCTCTTTTCATAAACTTCAT+TGG + chr4_2:2702802-2702821 None:intergenic 30.0%
CCAATGAAGTTTATGAAAAG+AGG - chr4_2:2702799-2702818 Msa0583880:CDS 30.0%
AAGAGGATGTCATGAAAATT+TGG - chr4_2:2702816-2702835 Msa0583880:CDS 30.0%
! ATTTGGTGGAGTTAAAAATG+GGG - chr4_2:2702833-2702852 Msa0583880:CDS 30.0%
CAAGAGATAAAACAGCTAAT+GGG + chr4_2:2703032-2703051 None:intergenic 30.0%
ACAAGAGATAAAACAGCTAA+TGG + chr4_2:2703033-2703052 None:intergenic 30.0%
CAAAATCAAGAACTGCAAAA+TGG - chr4_2:2700770-2700789 Msa0583880:CDS 30.0%
TGTAGCTCCACAAAATATTT+AGG + chr4_2:2700919-2700938 None:intergenic 30.0%
! AATATTTTGTGGAGCTACAT+TGG - chr4_2:2700920-2700939 Msa0583880:CDS 30.0%
! GTGCTAAACAAGATGTATTT+TGG - chr4_2:2700983-2701002 Msa0583880:intron 30.0%
!! TAAACAAGATGTATTTTGGG+TGG - chr4_2:2700987-2701006 Msa0583880:intron 30.0%
AATATTTGGTCGCAATACAT+TGG - chr4_2:2701122-2701141 Msa0583880:intron 30.0%
TTCAGCTTCAACCTTTATAT+TGG + chr4_2:2701160-2701179 None:intergenic 30.0%
AGCAAGAAATTATCATCCTT+TGG - chr4_2:2701464-2701483 Msa0583880:CDS 30.0%
GACATTTCAACTTCAAAACT+GGG + chr4_2:2701495-2701514 None:intergenic 30.0%
TGACATTTCAACTTCAAAAC+TGG + chr4_2:2701496-2701515 None:intergenic 30.0%
TTATGCCAAAGGATGTTATT+TGG - chr4_2:2701521-2701540 Msa0583880:intron 30.0%
ACATACCAAATAACATCCTT+TGG + chr4_2:2701529-2701548 None:intergenic 30.0%
AGAAACCAATATTGAAACAG+AGG - chr4_2:2701869-2701888 Msa0583880:intron 30.0%
TTCATCAACTCTAAATCTTG+CGG + chr4_2:2701941-2701960 None:intergenic 30.0%
!! ATTTAGAGTTGATGAAGACA+TGG - chr4_2:2701945-2701964 Msa0583880:intron 30.0%
AACTTCAACTTCTTAAAGCT+AGG + chr4_2:2702144-2702163 None:intergenic 30.0%
TTTAAGAAGTTGAAGTTGCA+AGG - chr4_2:2702147-2702166 Msa0583880:intron 30.0%
CAAAGAGCAAAGACAATAAA+GGG - chr4_2:2702291-2702310 Msa0583880:intron 30.0%
!! TTTGGACATTGTTTTTCCTT+TGG - chr4_2:2702425-2702444 Msa0583880:intron 30.0%
TCTATGTAATTAATCGTACC+GGG + chr4_2:2702626-2702645 None:intergenic 30.0%
!!! AGAGATGTTTGTTTTTTGAG+AGG - chr4_2:2702706-2702725 Msa0583880:intron 30.0%
!!! TGTTTTTTGAGAGGATAGAT+AGG - chr4_2:2702715-2702734 Msa0583880:intron 30.0%
! CCTCTTTTCATAAACTTCAT+TGG + chr4_2:2702802-2702821 None:intergenic 30.0%
CCAATGAAGTTTATGAAAAG+AGG - chr4_2:2702799-2702818 Msa0583880:CDS 30.0%
AAGAGGATGTCATGAAAATT+TGG - chr4_2:2702816-2702835 Msa0583880:CDS 30.0%
! ATTTGGTGGAGTTAAAAATG+GGG - chr4_2:2702833-2702852 Msa0583880:CDS 30.0%
CAAGAGATAAAACAGCTAAT+GGG + chr4_2:2703032-2703051 None:intergenic 30.0%
ACAAGAGATAAAACAGCTAA+TGG + chr4_2:2703033-2703052 None:intergenic 30.0%
TGATCTTGAAGAACTTTCGA+GGG + chr4_2:2700748-2700767 None:intergenic 35.0%
ATGATCTTGAAGAACTTTCG+AGG + chr4_2:2700749-2700768 None:intergenic 35.0%
! GAGGGTTCCTAAATATTTTG+TGG - chr4_2:2700909-2700928 Msa0583880:CDS 35.0%
! CATCTTGTTTAGCACCATTT+GGG + chr4_2:2700978-2700997 None:intergenic 35.0%
! ACATCTTGTTTAGCACCATT+TGG + chr4_2:2700979-2700998 None:intergenic 35.0%
AGTACATCTCAAAGGAGAAA+AGG - chr4_2:2701228-2701247 Msa0583880:intron 35.0%
TGGCAAGAGAAAAAGGAATA+TGG - chr4_2:2701251-2701270 Msa0583880:intron 35.0%
AACTTTGCAGGTTGTAATAG+AGG - chr4_2:2701387-2701406 Msa0583880:intron 35.0%
! TCAAAACTGGGATTTTCCAA+AGG + chr4_2:2701483-2701502 None:intergenic 35.0%
GGTATCCTCTGTTTCAATAT+TGG + chr4_2:2701877-2701896 None:intergenic 35.0%
TATTGAAACAGAGGATACCA+AGG - chr4_2:2701878-2701897 Msa0583880:intron 35.0%
GCAAAGAGCAAAGACAATAA+AGG - chr4_2:2702290-2702309 Msa0583880:intron 35.0%
! ATAAAGGGACTTCAAGTTCT+AGG - chr4_2:2702306-2702325 Msa0583880:CDS 35.0%
TGCTCAAAAACACATCTTCT+CGG - chr4_2:2702332-2702351 Msa0583880:CDS 35.0%
TTGAGAAATTCAGCTACCAA+AGG + chr4_2:2702444-2702463 None:intergenic 35.0%
AGTCTTTGTACAGTTGTACT+AGG - chr4_2:2702473-2702492 Msa0583880:intron 35.0%
! CAGTTGTACTAGGATGTTTT+TGG - chr4_2:2702483-2702502 Msa0583880:intron 35.0%
AATTAATCGTACCGGGTATT+GGG + chr4_2:2702619-2702638 None:intergenic 35.0%
TAATTAATCGTACCGGGTAT+TGG + chr4_2:2702620-2702639 None:intergenic 35.0%
AGGATGTCATGAAAATTTGG+TGG - chr4_2:2702819-2702838 Msa0583880:CDS 35.0%
TTTGGTGGAGTTAAAAATGG+GGG - chr4_2:2702834-2702853 Msa0583880:CDS 35.0%
ATCGTAGTATTCATGGTTGT+AGG - chr4_2:2702887-2702906 Msa0583880:intron 35.0%
AAAGAATGCAATGTGGAGAT+TGG - chr4_2:2702937-2702956 Msa0583880:intron 35.0%
TGATCTTGAAGAACTTTCGA+GGG + chr4_2:2700748-2700767 None:intergenic 35.0%
ATGATCTTGAAGAACTTTCG+AGG + chr4_2:2700749-2700768 None:intergenic 35.0%
! GAGGGTTCCTAAATATTTTG+TGG - chr4_2:2700909-2700928 Msa0583880:CDS 35.0%
! CATCTTGTTTAGCACCATTT+GGG + chr4_2:2700978-2700997 None:intergenic 35.0%
! ACATCTTGTTTAGCACCATT+TGG + chr4_2:2700979-2700998 None:intergenic 35.0%
AGTACATCTCAAAGGAGAAA+AGG - chr4_2:2701228-2701247 Msa0583880:intron 35.0%
TGGCAAGAGAAAAAGGAATA+TGG - chr4_2:2701251-2701270 Msa0583880:intron 35.0%
AACTTTGCAGGTTGTAATAG+AGG - chr4_2:2701387-2701406 Msa0583880:intron 35.0%
! TCAAAACTGGGATTTTCCAA+AGG + chr4_2:2701483-2701502 None:intergenic 35.0%
GGTATCCTCTGTTTCAATAT+TGG + chr4_2:2701877-2701896 None:intergenic 35.0%
TATTGAAACAGAGGATACCA+AGG - chr4_2:2701878-2701897 Msa0583880:intron 35.0%
GCAAAGAGCAAAGACAATAA+AGG - chr4_2:2702290-2702309 Msa0583880:intron 35.0%
! ATAAAGGGACTTCAAGTTCT+AGG - chr4_2:2702306-2702325 Msa0583880:CDS 35.0%
TGCTCAAAAACACATCTTCT+CGG - chr4_2:2702332-2702351 Msa0583880:CDS 35.0%
TTGAGAAATTCAGCTACCAA+AGG + chr4_2:2702444-2702463 None:intergenic 35.0%
AGTCTTTGTACAGTTGTACT+AGG - chr4_2:2702473-2702492 Msa0583880:intron 35.0%
! CAGTTGTACTAGGATGTTTT+TGG - chr4_2:2702483-2702502 Msa0583880:intron 35.0%
AATTAATCGTACCGGGTATT+GGG + chr4_2:2702619-2702638 None:intergenic 35.0%
TAATTAATCGTACCGGGTAT+TGG + chr4_2:2702620-2702639 None:intergenic 35.0%
AGGATGTCATGAAAATTTGG+TGG - chr4_2:2702819-2702838 Msa0583880:CDS 35.0%
TTTGGTGGAGTTAAAAATGG+GGG - chr4_2:2702834-2702853 Msa0583880:CDS 35.0%
ATCGTAGTATTCATGGTTGT+AGG - chr4_2:2702887-2702906 Msa0583880:intron 35.0%
AAAGAATGCAATGTGGAGAT+TGG - chr4_2:2702937-2702956 Msa0583880:intron 35.0%
TTTGGGAGAGTAAAGACTAC+TGG + chr4_2:2700961-2700980 None:intergenic 40.0%
GTAGTCTTTACTCTCCCAAA+TGG - chr4_2:2700961-2700980 Msa0583880:CDS 40.0%
ATTGCGAAATCTCTTGTACG+TGG - chr4_2:2701051-2701070 Msa0583880:intron 40.0%
! ATGGTGCTAGTACATCTCAA+AGG - chr4_2:2701220-2701239 Msa0583880:intron 40.0%
ACATCTCAAAGGAGAAAAGG+TGG - chr4_2:2701231-2701250 Msa0583880:intron 40.0%
GAAAAGGTGGCAAGAGAAAA+AGG - chr4_2:2701244-2701263 Msa0583880:intron 40.0%
TTTGCAGGTTGTAATAGAGG+AGG - chr4_2:2701390-2701409 Msa0583880:intron 40.0%
TAGAGGAGGCAAGATTAAGA+AGG - chr4_2:2701404-2701423 Msa0583880:intron 40.0%
ATGTCACGATCTTATGCCAA+AGG - chr4_2:2701510-2701529 Msa0583880:intron 40.0%
AAATCATCTACTGTGACCAC+TGG - chr4_2:2702003-2702022 Msa0583880:intron 40.0%
GCTCAAAAACACATCTTCTC+GGG - chr4_2:2702333-2702352 Msa0583880:CDS 40.0%
GGTTATGAATTCCCAATACC+CGG - chr4_2:2702605-2702624 Msa0583880:CDS 40.0%
TTGGTGGAGTTAAAAATGGG+GGG - chr4_2:2702835-2702854 Msa0583880:CDS 40.0%
TTTGGGAGAGTAAAGACTAC+TGG + chr4_2:2700961-2700980 None:intergenic 40.0%
GTAGTCTTTACTCTCCCAAA+TGG - chr4_2:2700961-2700980 Msa0583880:CDS 40.0%
ATTGCGAAATCTCTTGTACG+TGG - chr4_2:2701051-2701070 Msa0583880:intron 40.0%
! ATGGTGCTAGTACATCTCAA+AGG - chr4_2:2701220-2701239 Msa0583880:intron 40.0%
ACATCTCAAAGGAGAAAAGG+TGG - chr4_2:2701231-2701250 Msa0583880:intron 40.0%
GAAAAGGTGGCAAGAGAAAA+AGG - chr4_2:2701244-2701263 Msa0583880:intron 40.0%
TTTGCAGGTTGTAATAGAGG+AGG - chr4_2:2701390-2701409 Msa0583880:intron 40.0%
TAGAGGAGGCAAGATTAAGA+AGG - chr4_2:2701404-2701423 Msa0583880:intron 40.0%
ATGTCACGATCTTATGCCAA+AGG - chr4_2:2701510-2701529 Msa0583880:intron 40.0%
AAATCATCTACTGTGACCAC+TGG - chr4_2:2702003-2702022 Msa0583880:intron 40.0%
GCTCAAAAACACATCTTCTC+GGG - chr4_2:2702333-2702352 Msa0583880:CDS 40.0%
GGTTATGAATTCCCAATACC+CGG - chr4_2:2702605-2702624 Msa0583880:CDS 40.0%
TTGGTGGAGTTAAAAATGGG+GGG - chr4_2:2702835-2702854 Msa0583880:CDS 40.0%
GCTAAATGACTTCCAACCAG+TGG + chr4_2:2702022-2702041 None:intergenic 45.0%
TACCATTACTCGAGCAAGAG+AGG - chr4_2:2702116-2702135 Msa0583880:intron 45.0%
TAAAAATGGGGGGACGATCT+TGG - chr4_2:2702845-2702864 Msa0583880:CDS 45.0%
GCTAAATGACTTCCAACCAG+TGG + chr4_2:2702022-2702041 None:intergenic 45.0%
TACCATTACTCGAGCAAGAG+AGG - chr4_2:2702116-2702135 Msa0583880:intron 45.0%
TAAAAATGGGGGGACGATCT+TGG - chr4_2:2702845-2702864 Msa0583880:CDS 45.0%
!! AAAATTATATATTATCATTA+TGG - chr4_2:2702575-2702594 Msa0583880:CDS 5.0%
!! AAAATTATATATTATCATTA+TGG - chr4_2:2702575-2702594 Msa0583880:CDS 5.0%
!! GTATTTTGGGTGGAGCGTGA+CGG - chr4_2:2700997-2701016 Msa0583880:intron 50.0%
! TGGAGCGTGACGGAGATATT+TGG - chr4_2:2701007-2701026 Msa0583880:intron 50.0%
CATCTACTGTGACCACTGGT+TGG - chr4_2:2702007-2702026 Msa0583880:intron 50.0%
CTCCTCTCTTGCTCGAGTAA+TGG + chr4_2:2702121-2702140 None:intergenic 50.0%
CATGGTTGTAGGTTCTCTGC+AGG - chr4_2:2702898-2702917 Msa0583880:intron 50.0%
GTTGTAGGTTCTCTGCAGGT+TGG - chr4_2:2702902-2702921 Msa0583880:intron 50.0%
!! GTATTTTGGGTGGAGCGTGA+CGG - chr4_2:2700997-2701016 Msa0583880:intron 50.0%
! TGGAGCGTGACGGAGATATT+TGG - chr4_2:2701007-2701026 Msa0583880:intron 50.0%
CATCTACTGTGACCACTGGT+TGG - chr4_2:2702007-2702026 Msa0583880:intron 50.0%
CTCCTCTCTTGCTCGAGTAA+TGG + chr4_2:2702121-2702140 None:intergenic 50.0%
CATGGTTGTAGGTTCTCTGC+AGG - chr4_2:2702898-2702917 Msa0583880:intron 50.0%
GTTGTAGGTTCTCTGCAGGT+TGG - chr4_2:2702902-2702921 Msa0583880:intron 50.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 2700731 2703056 2700731 ID=Msa0583880;Name=Msa0583880
chr4_2 mRNA 2700731 2703056 2700731 ID=Msa0583880-mRNA-1;Parent=Msa0583880;Name=Msa0583880-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.33|0|1|0.33|0.28|7|0|368
chr4_2 exon 2702988 2703056 2702988 ID=Msa0583880-mRNA-1:exon:818;Parent=Msa0583880-mRNA-1
chr4_2 exon 2702718 2702877 2702718 ID=Msa0583880-mRNA-1:exon:817;Parent=Msa0583880-mRNA-1
chr4_2 exon 2702484 2702687 2702484 ID=Msa0583880-mRNA-1:exon:816;Parent=Msa0583880-mRNA-1
chr4_2 exon 2702292 2702390 2702292 ID=Msa0583880-mRNA-1:exon:815;Parent=Msa0583880-mRNA-1
chr4_2 exon 2701619 2701852 2701619 ID=Msa0583880-mRNA-1:exon:814;Parent=Msa0583880-mRNA-1
chr4_2 exon 2701431 2701507 2701431 ID=Msa0583880-mRNA-1:exon:813;Parent=Msa0583880-mRNA-1
chr4_2 exon 2700731 2700994 2700731 ID=Msa0583880-mRNA-1:exon:812;Parent=Msa0583880-mRNA-1
chr4_2 CDS 2702988 2703056 2702988 ID=Msa0583880-mRNA-1:cds;Parent=Msa0583880-mRNA-1
chr4_2 CDS 2702718 2702877 2702718 ID=Msa0583880-mRNA-1:cds;Parent=Msa0583880-mRNA-1
chr4_2 CDS 2702484 2702687 2702484 ID=Msa0583880-mRNA-1:cds;Parent=Msa0583880-mRNA-1
chr4_2 CDS 2702292 2702390 2702292 ID=Msa0583880-mRNA-1:cds;Parent=Msa0583880-mRNA-1
chr4_2 CDS 2701619 2701852 2701619 ID=Msa0583880-mRNA-1:cds;Parent=Msa0583880-mRNA-1
chr4_2 CDS 2701431 2701507 2701431 ID=Msa0583880-mRNA-1:cds;Parent=Msa0583880-mRNA-1
chr4_2 CDS 2700731 2700994 2700731 ID=Msa0583880-mRNA-1:cds;Parent=Msa0583880-mRNA-1
Gene Sequence

>Msa0583880

ATGTCATTTTATCACCCTCGAAAGTTCTTCAAGATCATGCAAAATCAAGAACTGCAAAATGGAGAGCTTAGGGTTCCTAAATATTTTGTGGAGCTACATTGGAAAAATGTATCAAATCCAGTAGTCTTTACTCTCCCAAATGGTGCTAAACAAGATGTATTTTGGGTGGAGCGTGACGGAGATATTTGGTTTCAAAAAAATTGGGAAAAAATTGCGAAATCTCTTGTACGAGGATCATGTTTCAAAGTTGAAATATTTGGTCGCAATACATTGGAAATAAACTATTCCAATATAAAGGTTGAAGCTGAAGAAGTTGTTACAGTGAGTGATGACAATGTTACTAATACTAATGGTGCTAGTACATCTCAAAGGAGAAAAGGTGGCAAGAGAAAAAGGAATATGGATCTTGATGCTAATCAGAAAAAAATCAAAGGTTGTAATAGAGGAGGCAAGATTAAGAAGGCTAAAAAATGCTTAAGAACTGAAGCTGTTAAAGAGAGAGCAAGAAATTATCATCCTTTGGAAAATCCCAGGACCGCAAGATTTAGAGTTGATGAAGACATGGCTATAGAAGTGAAGTTGAATTTTGATGATGCTACTAAATCATCTACTGTGACCACTGGTTGGAAGTCATTTAGCAAAATATATAATTTGAAACTTGGTGATGTGTGCAAATTTGTGATGACTCAATGCCAACCACTTTTATTCACTATTACCATTACTCGAGCAAGAGAGGAGCCTAGCTTTAAGAAGTTGAAGTTGCAAGTAATAACAATGCAAAGAGCAAAGACAATAAAGGGACTTCAAGTTCTAGGAGCTGCTCAAAAACACATCTTCTCGGGAGATGTACCAATGAAGTTTATGAAAAGAGGATGTCATGAAAATTTGGTGGAGTTAAAAATGGGGGGACGATCTTGGTTTGTAAAAGTGAATTATTATCGTAGTATTCATGGTTGTAGGTTCTCTGCAGGTTGGAAACAATTCTTAAAAGAATGCAATGTGGAGATTGGAGATACTTGTCTCTTGAAGATGATTGATGAGAAAAAATTTGTGTTTAATGTTTCAATTGTAGGAAAGAACCCATTAGCTGTTTTATCTCTTGTTTAA

Protein sequence

>Msa0583880

MSFYHPRKFFKIMQNQELQNGELRVPKYFVELHWKNVSNPVVFTLPNGAKQDVFWVERDGDIWFQKNWEKIAKSLVRGSCFKVEIFGRNTLEINYSNIKVEAEEVVTVSDDNVTNTNGASTSQRRKGGKRKRNMDLDANQKKIKGCNRGGKIKKAKKCLRTEAVKERARNYHPLENPRTARFRVDEDMAIEVKLNFDDATKSSTVTTGWKSFSKIYNLKLGDVCKFVMTQCQPLLFTITITRAREEPSFKKLKLQVITMQRAKTIKGLQVLGAAQKHIFSGDVPMKFMKRGCHENLVELKMGGRSWFVKVNYYRSIHGCRFSAGWKQFLKECNVEIGDTCLLKMIDEKKFVFNVSIVGKNPLAVLSLV*