Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584880 | AES87959.1 | 80.392 | 102 | 17 | 1 | 1 | 99 | 1 | 102 | 3.94e-42 | 148 |
| Msa0584880 | AES87959.1 | 81.250 | 112 | 20 | 1 | 102 | 212 | 6 | 117 | 4.19e-50 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0584880 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584880 | MtrunA17_Chr4g0019481 | 81.250 | 112 | 20 | 1 | 102 | 212 | 6 | 117 | 3.86e-54 | 169 |
| Msa0584880 | MtrunA17_Chr4g0019481 | 80.392 | 102 | 17 | 1 | 1 | 99 | 1 | 102 | 3.62e-46 | 148 |
| Msa0584880 | MtrunA17_Chr4g0019471 | 72.222 | 126 | 20 | 2 | 102 | 212 | 6 | 131 | 1.20e-49 | 158 |
| Msa0584880 | MtrunA17_Chr4g0019471 | 70.690 | 116 | 17 | 2 | 1 | 99 | 1 | 116 | 1.11e-41 | 137 |
| Msa0584880 | MtrunA17_Chr4g0019551 | 76.316 | 114 | 26 | 1 | 100 | 212 | 4 | 117 | 2.42e-44 | 144 |
| Msa0584880 | MtrunA17_Chr4g0019551 | 74.510 | 102 | 23 | 1 | 1 | 99 | 1 | 102 | 1.18e-32 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 27 sgRNAs with CRISPR-Local
Find 463 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGATTCTAATATAAAATT+TGG | 0.084314 | 4_2:+5036406 | None:intergenic |
| TCTCATTCATCTGGTGTATA+AGG | 0.183369 | 4_2:+5036166 | None:intergenic |
| TTTGGTTCAGGCTGGTTATT+TGG | 0.187418 | 4_2:+5044124 | None:intergenic |
| TCGGGTTCAGGCTGGTTATT+TGG | 0.220105 | 4_2:+5036367 | None:intergenic |
| CTAGATTCTAATATATAATC+TGG | 0.344499 | 4_2:+5044163 | None:intergenic |
| CTCATTCATCTGGTGTATAA+GGG | 0.358870 | 4_2:+5036167 | None:intergenic |
| TCAGGCTGGTTATTTGGTGG+TGG | 0.452210 | 4_2:+5044130 | None:intergenic |
| GGAGGTTGGTTCAAGTCAAA+TGG | 0.461699 | 4_2:+5043971 | None:intergenic |
| TCAGGCTGGTTATTTGGTGG+TGG | 0.474246 | 4_2:+5036373 | None:intergenic |
| TTGAGGTCGAAAGCTCGAAC+AGG | 0.496472 | 4_2:+5036193 | None:intergenic |
| GGAGGCTGGTTCAAGTCAAA+TGG | 0.506887 | 4_2:+5036214 | None:intergenic |
| GGTTCAGGCTGGTTATTTGG+TGG | 0.520040 | 4_2:+5044127 | None:intergenic |
| CGAAAGCTTGAACAGGAGGT+TGG | 0.521765 | 4_2:+5043957 | None:intergenic |
| AAGTCAAATGGTTGCACATG+TGG | 0.522527 | 4_2:+5036226 | None:intergenic |
| AAGTCAAATGGTTGCACATG+TGG | 0.522527 | 4_2:+5043983 | None:intergenic |
| GGTTCAGGCTGGTTATTTGG+TGG | 0.524862 | 4_2:+5036370 | None:intergenic |
| CGAAAGCTCGAACAGGAGGC+TGG | 0.528604 | 4_2:+5036200 | None:intergenic |
| AATGGTTGCACATGTGGAGG+TGG | 0.555990 | 4_2:+5036232 | None:intergenic |
| AATGGTTGCACATGTGGAGG+TGG | 0.555990 | 4_2:+5043989 | None:intergenic |
| TTGTGTCACATTCACTGCAT+AGG | 0.586276 | 4_2:+5036479 | None:intergenic |
| ACTGCTAAAGCTTCTCGAGA+TGG | 0.596385 | 4_2:+5036451 | None:intergenic |
| ACTGCTAAAGCTTCTCGAGA+TGG | 0.596385 | 4_2:+5044208 | None:intergenic |
| CTGGTGTATAAGGGAGATTG+AGG | 0.611261 | 4_2:+5036176 | None:intergenic |
| ATATTAGAATCGAGTAAACA+AGG | 0.624706 | 4_2:-5036397 | Msa0584880:CDS |
| AGGTCGAAAGCTCGAACAGG+AGG | 0.629084 | 4_2:+5036196 | None:intergenic |
| TCAAATGGTTGCACATGTGG+AGG | 0.671560 | 4_2:+5036229 | None:intergenic |
| TCAAATGGTTGCACATGTGG+AGG | 0.671560 | 4_2:+5043986 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAATTTTTTTTTTTTTA+AGG | - | chr4_2:5042086-5042105 | Msa0584880:intron | 0.0% |
| !! | AAAAACTATTATTAATAAAG+TGG | - | chr4_2:5036544-5036563 | Msa0584880:intron | 10.0% |
| !!! | TTTTTTTATTTTGATCTATA+AGG | + | chr4_2:5037222-5037241 | None:intergenic | 10.0% |
| !! | ATTAAAAAGTAAAGAATAAA+AGG | - | chr4_2:5039778-5039797 | Msa0584880:intron | 10.0% |
| !! | TTAATGATTATTTATTTAGT+AGG | + | chr4_2:5042390-5042409 | None:intergenic | 10.0% |
| !! | AAAGTTATTTATAAAATGAA+TGG | - | chr4_2:5042716-5042735 | Msa0584880:intron | 10.0% |
| !! | AAGTTATTTATAAAATGAAT+GGG | - | chr4_2:5042717-5042736 | Msa0584880:intron | 10.0% |
| !! | TTTACTAAAAAAAAATTGTA+TGG | + | chr4_2:5043073-5043092 | None:intergenic | 10.0% |
| !!! | TACAATTTTTTTTTAGTAAA+CGG | - | chr4_2:5043073-5043092 | Msa0584880:intron | 10.0% |
| !!! | AATTTTAAAAAAATGTTAGA+TGG | - | chr4_2:5043320-5043339 | Msa0584880:intron | 10.0% |
| !!! | CTTTTTTAAAGTTTTTTTAT+AGG | + | chr4_2:5043637-5043656 | None:intergenic | 10.0% |
| !!! | TAATCTTTTATTTTCAATTT+TGG | - | chr4_2:5043664-5043683 | Msa0584880:intron | 10.0% |
| !!! | AATCTTTTATTTTCAATTTT+GGG | - | chr4_2:5043665-5043684 | Msa0584880:intron | 10.0% |
| !! | AAATAATATAAGATACATTA+TGG | + | chr4_2:5043776-5043795 | None:intergenic | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_2:5037618-5037637 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_2:5037618-5037637 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_2:5037618-5037637 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_2:5037618-5037637 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_2:5037618-5037637 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_2:5037618-5037637 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_2:5037618-5037637 | None:intergenic | 100.0% |
| !! | TATTATCAAGAATAAGATAT+TGG | - | chr4_2:5036590-5036609 | Msa0584880:intron | 15.0% |
| !! | AAACAACAATTATAAATGAT+TGG | + | chr4_2:5036624-5036643 | None:intergenic | 15.0% |
| !!! | GATTATAATTTGTTGTTTAT+AGG | - | chr4_2:5036810-5036829 | Msa0584880:intron | 15.0% |
| !!! | ATCAAAATAAAAAAAGTGTT+CGG | - | chr4_2:5037227-5037246 | Msa0584880:intron | 15.0% |
| !! | TAAAGTTATAAATCGAATTA+GGG | - | chr4_2:5037517-5037536 | Msa0584880:intron | 15.0% |
| !! | TACTAAAGTTATAAATCAAA+TGG | - | chr4_2:5037906-5037925 | Msa0584880:intron | 15.0% |
| !! | TAAAAACAGCTATTAAAAAA+TGG | + | chr4_2:5039092-5039111 | None:intergenic | 15.0% |
| !!! | TTGTTTCTTATAAATAAGAT+CGG | + | chr4_2:5039633-5039652 | None:intergenic | 15.0% |
| !!! | GTCAATTGTTTTTTATAAAT+AGG | - | chr4_2:5039735-5039754 | Msa0584880:intron | 15.0% |
| !!! | AAATAATTATTTTTGAAGCA+AGG | - | chr4_2:5040229-5040248 | Msa0584880:intron | 15.0% |
| !!! | AATAATTATTTTTGAAGCAA+GGG | - | chr4_2:5040230-5040249 | Msa0584880:intron | 15.0% |
| !! | AATAAAAATTTCTCTTTCAA+TGG | + | chr4_2:5041037-5041056 | None:intergenic | 15.0% |
| !!! | TAGATTTATGTTTTTTTCTT+AGG | - | chr4_2:5041604-5041623 | Msa0584880:intron | 15.0% |
| !! | TCAATTGAGATTATAATAAT+CGG | - | chr4_2:5041943-5041962 | Msa0584880:intron | 15.0% |
| !! | ATAGAAAAATTGTATACATA+TGG | + | chr4_2:5042050-5042069 | None:intergenic | 15.0% |
| !!! | TTTCACTCTTTTTAAAAAAA+AGG | + | chr4_2:5042219-5042238 | None:intergenic | 15.0% |
| !! | AAAAATTGTATACATATGTA+GGG | + | chr4_2:5042313-5042332 | None:intergenic | 15.0% |
| !!! | TTTTTATTTTTTACCTCTTT+TGG | + | chr4_2:5042465-5042484 | None:intergenic | 15.0% |
| !!! | AAATAGTCATACTTTTTTTT+AGG | - | chr4_2:5042482-5042501 | Msa0584880:intron | 15.0% |
| !!! | AATAGTCATACTTTTTTTTA+GGG | - | chr4_2:5042483-5042502 | Msa0584880:intron | 15.0% |
| !! | AGTTATTTATAAAATGAATG+GGG | - | chr4_2:5042718-5042737 | Msa0584880:intron | 15.0% |
| !! | CATTGTTTATAAAATTGTAA+AGG | + | chr4_2:5042980-5042999 | None:intergenic | 15.0% |
| !! | TCTAAGTTAAATTTGAATAT+TGG | + | chr4_2:5043518-5043537 | None:intergenic | 15.0% |
| !! | ATTATGGAAATAATTATGTT+CGG | - | chr4_2:5043691-5043710 | Msa0584880:intron | 15.0% |
| !! | AAAATGGTAACAATATATAT+AGG | + | chr4_2:5043851-5043870 | None:intergenic | 15.0% |
| !! | CTAGATTCTAATATATAATC+TGG | + | chr4_2:5036261-5036280 | None:intergenic | 20.0% |
| !! | ATATTAGAATCTAGTAAACA+AGG | - | chr4_2:5036267-5036286 | Msa0584880:CDS | 20.0% |
| !!! | TTTTAAATTTCTCATTCATC+TGG | + | chr4_2:5036510-5036529 | None:intergenic | 20.0% |
| !! | GATATTGTTGTAAAAACAAA+AGG | + | chr4_2:5036907-5036926 | None:intergenic | 20.0% |
| !!! | GTTAATTTTTTTGTCTACTA+TGG | - | chr4_2:5037184-5037203 | Msa0584880:intron | 20.0% |
| !!! | TCAAAATAAAAAAAGTGTTC+GGG | - | chr4_2:5037228-5037247 | Msa0584880:intron | 20.0% |
| !!! | TTTTCCTTTAATAGAATAAG+TGG | - | chr4_2:5037401-5037420 | Msa0584880:intron | 20.0% |
| !! | CTAAAGTTATAAATCGAATT+AGG | - | chr4_2:5037516-5037535 | Msa0584880:intron | 20.0% |
| !! | AAAGTTATAAATCGAATTAG+GGG | - | chr4_2:5037518-5037537 | Msa0584880:intron | 20.0% |
| !!! | TTTTTTTTGTTTTGTTTTGG+GGG | + | chr4_2:5037645-5037664 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTGTTTTGTTTTG+GGG | + | chr4_2:5037646-5037665 | None:intergenic | 20.0% |
| !!! | GGTTTTTTTTGTTTTGTTTT+GGG | + | chr4_2:5037647-5037666 | None:intergenic | 20.0% |
| !! | AACTAAAAAAAATGTATTGG+AGG | + | chr4_2:5037672-5037691 | None:intergenic | 20.0% |
| !! | TGGAACTAAAAAAAATGTAT+TGG | + | chr4_2:5037675-5037694 | None:intergenic | 20.0% |
| !!! | CTTTAATTTGTTTGCAAATT+TGG | + | chr4_2:5037827-5037846 | None:intergenic | 20.0% |
| !! | TTATAAATCAAATGGAAAGT+GGG | - | chr4_2:5037914-5037933 | Msa0584880:intron | 20.0% |
| !! | AATAAAGTTGTAGATTGAAT+TGG | - | chr4_2:5037975-5037994 | Msa0584880:intron | 20.0% |
| !! | ATAAAGTTGTAGATTGAATT+GGG | - | chr4_2:5037976-5037995 | Msa0584880:intron | 20.0% |
| !!! | AATTGAGTGTTTTGAATTTA+TGG | - | chr4_2:5038063-5038082 | Msa0584880:intron | 20.0% |
| !!! | ATTGAGTGTTTTGAATTTAT+GGG | - | chr4_2:5038064-5038083 | Msa0584880:intron | 20.0% |
| !! | ATATCAAACTATTTGTGTAA+AGG | - | chr4_2:5039057-5039076 | Msa0584880:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | - | chr4_2:5039279-5039298 | Msa0584880:intron | 20.0% |
| !!! | TTTTTTAAAAAGAACCTTCT+TGG | - | chr4_2:5039578-5039597 | Msa0584880:intron | 20.0% |
| !! | AAATAGATATAAAAACAGAG+AGG | - | chr4_2:5041181-5041200 | Msa0584880:intron | 20.0% |
| !! | TAAAAGAAGTAAAAAGGAAA+AGG | + | chr4_2:5041251-5041270 | None:intergenic | 20.0% |
| !! | GAAAAAAACATAAATCTAAC+TGG | + | chr4_2:5041602-5041621 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTTCTTAGGTAAA+AGG | - | chr4_2:5041611-5041630 | Msa0584880:intron | 20.0% |
| !!! | CTCTTAGAAGTTTTTTTTAA+AGG | - | chr4_2:5041639-5041658 | Msa0584880:intron | 20.0% |
| !!! | TAAAAGTTATTTTGAAGTGT+TGG | + | chr4_2:5041700-5041719 | None:intergenic | 20.0% |
| !! | TTAAGTTTATCCTATTTCAT+CGG | - | chr4_2:5041744-5041763 | Msa0584880:intron | 20.0% |
| !! | GAAAGTGACATAAAAAATTA+AGG | + | chr4_2:5041836-5041855 | None:intergenic | 20.0% |
| !!! | CTCAATTGATTTAAAATCAA+TGG | + | chr4_2:5041932-5041951 | None:intergenic | 20.0% |
| !! | GAAAAATTGTATACATATGT+AGG | + | chr4_2:5042314-5042333 | None:intergenic | 20.0% |
| !!! | TAGTGTTTAACTATTCTTTT+TGG | - | chr4_2:5042364-5042383 | Msa0584880:intron | 20.0% |
| !!! | ATAGTCATACTTTTTTTTAG+GGG | - | chr4_2:5042484-5042503 | Msa0584880:intron | 20.0% |
| !! | ACAACTCAAATTATTGATAA+AGG | - | chr4_2:5042620-5042639 | Msa0584880:intron | 20.0% |
| !! | AAAAACTAAGAGTGAAAAAT+AGG | - | chr4_2:5042787-5042806 | Msa0584880:intron | 20.0% |
| !! | AAAACTAAGAGTGAAAAATA+GGG | - | chr4_2:5042788-5042807 | Msa0584880:intron | 20.0% |
| !!! | TTAGAGTTTTATCAGATATA+TGG | - | chr4_2:5042835-5042854 | Msa0584880:intron | 20.0% |
| !!! | TAGAGTTTTATCAGATATAT+GGG | - | chr4_2:5042836-5042855 | Msa0584880:intron | 20.0% |
| !! | AAAAAATAAACAAGAGATCA+TGG | - | chr4_2:5042875-5042894 | Msa0584880:intron | 20.0% |
| !! | AAACATTTCACAAAAGAAAA+GGG | - | chr4_2:5042915-5042934 | Msa0584880:intron | 20.0% |
| !! | TATTCATGAAAAGAAATTGA+CGG | - | chr4_2:5043000-5043019 | Msa0584880:intron | 20.0% |
| !! | TCATAAATTAAAATAGACGT+AGG | - | chr4_2:5043271-5043290 | Msa0584880:intron | 20.0% |
| !!! | ACTTTTTGCAAAGTTAAAAA+AGG | + | chr4_2:5043429-5043448 | None:intergenic | 20.0% |
| !! | TTGATGTAATACAACATATT+CGG | + | chr4_2:5043486-5043505 | None:intergenic | 20.0% |
| !!! | ATTGACTGATTTTAAATTGA+TGG | + | chr4_2:5043565-5043584 | None:intergenic | 20.0% |
| !!! | GTCTGAAATATAATATTTTC+CGG | - | chr4_2:5043602-5043621 | Msa0584880:intron | 20.0% |
| !! | AAAGGAGAAATTTATGTTAA+AGG | - | chr4_2:5043721-5043740 | Msa0584880:intron | 20.0% |
| !! | AAGTATAACTCAAAGTAAAT+TGG | - | chr4_2:5043817-5043836 | Msa0584880:intron | 20.0% |
| !! | AGTATAACTCAAAGTAAATT+GGG | - | chr4_2:5043818-5043837 | Msa0584880:intron | 20.0% |
| !! | CTCGATTCTAATATAAAATT+TGG | + | chr4_2:5044018-5044037 | None:intergenic | 20.0% |
| !! | GAGAAATTTAAAACAAATCG+AGG | - | chr4_2:5036517-5036536 | Msa0584880:intron | 25.0% |
| ! | ACCTATATATAATTGTTGTC+AGG | - | chr4_2:5036725-5036744 | Msa0584880:intron | 25.0% |
| ! | ACCTGACAACAATTATATAT+AGG | + | chr4_2:5036729-5036748 | None:intergenic | 25.0% |
| ! | AAGGAAAATTTCTAATCACT+AGG | + | chr4_2:5037389-5037408 | None:intergenic | 25.0% |
| ! | ACAACCACTTATTCTATTAA+AGG | + | chr4_2:5037408-5037427 | None:intergenic | 25.0% |
| ! | CTTAAATATGTCGTCTAATA+AGG | - | chr4_2:5037563-5037582 | Msa0584880:intron | 25.0% |
| !!! | TTTTTTTGTTTTGTTTTGGG+GGG | + | chr4_2:5037644-5037663 | None:intergenic | 25.0% |
| !!! | GGGTTTTTTTTGTTTTGTTT+TGG | + | chr4_2:5037648-5037667 | None:intergenic | 25.0% |
| ! | AAAAAAAATGTATTGGAGGA+GGG | + | chr4_2:5037668-5037687 | None:intergenic | 25.0% |
| ! | TAAAAAAAATGTATTGGAGG+AGG | + | chr4_2:5037669-5037688 | None:intergenic | 25.0% |
| !!! | TTTTTTAGTTCCATCAAATG+AGG | - | chr4_2:5037682-5037701 | Msa0584880:intron | 25.0% |
| !!! | TAATTTGTTTGCAAATTTGG+AGG | + | chr4_2:5037824-5037843 | None:intergenic | 25.0% |
| ! | GTTATAAATCAAATGGAAAG+TGG | - | chr4_2:5037913-5037932 | Msa0584880:intron | 25.0% |
| ! | TTAATTCATGATAGAACAGA+TGG | - | chr4_2:5038572-5038591 | Msa0584880:intron | 25.0% |
| ! | CAGTTATAAAAATCTGCATA+TGG | - | chr4_2:5038925-5038944 | Msa0584880:intron | 25.0% |
| ! | AAACTATTTGTGTAAAGGAA+TGG | - | chr4_2:5039062-5039081 | Msa0584880:intron | 25.0% |
| ! | ATAACACAAAAGAAGTTGTA+AGG | + | chr4_2:5039441-5039460 | None:intergenic | 25.0% |
| !!! | TTTGTGTTATTTTCAGAGTA+AGG | - | chr4_2:5039451-5039470 | Msa0584880:intron | 25.0% |
| ! | CTTATACATTTACAAACTCT+GGG | + | chr4_2:5039481-5039500 | None:intergenic | 25.0% |
| ! | TCTTATACATTTACAAACTC+TGG | + | chr4_2:5039482-5039501 | None:intergenic | 25.0% |
| ! | GAGTTTGTAAATGTATAAGA+AGG | - | chr4_2:5039482-5039501 | Msa0584880:intron | 25.0% |
| ! | AATATAAACCTTCTTGAACA+TGG | + | chr4_2:5039540-5039559 | None:intergenic | 25.0% |
| ! | GGTTTATATTAAGAACCTTA+TGG | - | chr4_2:5039550-5039569 | Msa0584880:intron | 25.0% |
| !!! | AAGGTTCTTTTTAAAAAAGC+TGG | + | chr4_2:5039576-5039595 | None:intergenic | 25.0% |
| ! | TTCTTATAAATAAGATCGGA+TGG | + | chr4_2:5039629-5039648 | None:intergenic | 25.0% |
| ! | TAATTTATGTATACTCCATG+CGG | + | chr4_2:5039762-5039781 | None:intergenic | 25.0% |
| !! | TTTTGAATTTGACAGAGTAA+GGG | + | chr4_2:5040434-5040453 | None:intergenic | 25.0% |
| !! | CAAAAGTACATAAACACTTA+AGG | - | chr4_2:5040449-5040468 | Msa0584880:intron | 25.0% |
| ! | TAGAGTCAAAACTGAATTAT+TGG | - | chr4_2:5040513-5040532 | Msa0584880:intron | 25.0% |
| ! | TTACACAAATTTGACAACAA+AGG | - | chr4_2:5040955-5040974 | Msa0584880:intron | 25.0% |
| ! | TTATCTATGTGAAGACTATT+GGG | + | chr4_2:5041295-5041314 | None:intergenic | 25.0% |
| ! | ATTATCTATGTGAAGACTAT+TGG | + | chr4_2:5041296-5041315 | None:intergenic | 25.0% |
| !!! | TTTTACTTTTTCTTGAGTGT+TGG | + | chr4_2:5041382-5041401 | None:intergenic | 25.0% |
| ! | TAAGTTTATCCTATTTCATC+GGG | - | chr4_2:5041745-5041764 | Msa0584880:intron | 25.0% |
| ! | AATTTCTACGAAAATTACGA+TGG | - | chr4_2:5041805-5041824 | Msa0584880:intron | 25.0% |
| !!! | TACTCGTTTAATGTTTTAAC+GGG | + | chr4_2:5041873-5041892 | None:intergenic | 25.0% |
| !!! | CTACTCGTTTAATGTTTTAA+CGG | + | chr4_2:5041874-5041893 | None:intergenic | 25.0% |
| !!! | ATAATCGGTCATTTTTCTAA+AGG | - | chr4_2:5041958-5041977 | Msa0584880:intron | 25.0% |
| ! | AAAATTGTATACATATGGAC+CGG | + | chr4_2:5042045-5042064 | None:intergenic | 25.0% |
| !!! | CCATAAAAATTGATTTGGAT+CGG | + | chr4_2:5042189-5042208 | None:intergenic | 25.0% |
| !! | CCAAATCAATTTTTATGGTA+CGG | - | chr4_2:5042191-5042210 | Msa0584880:intron | 25.0% |
| !!! | ACCTCTTTTGGTAATTTTTT+GGG | + | chr4_2:5042453-5042472 | None:intergenic | 25.0% |
| !!! | TACCTCTTTTGGTAATTTTT+TGG | + | chr4_2:5042454-5042473 | None:intergenic | 25.0% |
| ! | CAAACATTTCACAAAAGAAA+AGG | - | chr4_2:5042914-5042933 | Msa0584880:intron | 25.0% |
| ! | ATTCATGAAAAGAAATTGAC+GGG | - | chr4_2:5043001-5043020 | Msa0584880:intron | 25.0% |
| ! | ATTAACGTATGTATCAAAGA+TGG | - | chr4_2:5043126-5043145 | Msa0584880:intron | 25.0% |
| ! | TCAACGATGAATTTAAATTG+AGG | + | chr4_2:5043228-5043247 | None:intergenic | 25.0% |
| ! | TATGTTGTATTACATCAACA+TGG | - | chr4_2:5043488-5043507 | Msa0584880:intron | 25.0% |
| !! | TTTTTATAGGTTCTTTTCAC+CGG | + | chr4_2:5043624-5043643 | None:intergenic | 25.0% |
| !!! | TTTCAATTTTGGGTGAATTA+TGG | - | chr4_2:5043675-5043694 | Msa0584880:intron | 25.0% |
| ! | ATTATGTTCGGTCAAAAAAA+AGG | - | chr4_2:5043703-5043722 | Msa0584880:intron | 25.0% |
| ! | GGGTGTAAGAAAAATAAAAA+TGG | + | chr4_2:5043867-5043886 | None:intergenic | 25.0% |
| ! | ATATTAGAATCGAGTAAACA+AGG | - | chr4_2:5044024-5044043 | Msa0584880:CDS | 25.0% |
| TTGTTTGACAGAAGAAATGT+AGG | - | chr4_2:5036672-5036691 | Msa0584880:intron | 30.0% | |
| TAATAGAATAAGTGGTTGTC+CGG | - | chr4_2:5037409-5037428 | Msa0584880:intron | 30.0% | |
| ACAATGCATAGTATATGTAG+GGG | + | chr4_2:5037449-5037468 | None:intergenic | 30.0% | |
| GACAATGCATAGTATATGTA+GGG | + | chr4_2:5037450-5037469 | None:intergenic | 30.0% | |
| !!! | TTTTTTGTTTTGTTTTGGGG+GGG | + | chr4_2:5037643-5037662 | None:intergenic | 30.0% |
| ATAAAACTCTCCTCATTTGA+TGG | + | chr4_2:5037695-5037714 | None:intergenic | 30.0% | |
| AGAGTAAGTGGAATAAATAG+AGG | + | chr4_2:5037762-5037781 | None:intergenic | 30.0% | |
| AAAGAAAAGGAAAGAGTAAG+TGG | + | chr4_2:5037774-5037793 | None:intergenic | 30.0% | |
| GGTTTGGGAAAAAAAAGAAA+AGG | + | chr4_2:5037787-5037806 | None:intergenic | 30.0% | |
| ATGTTGTTGCGTTGAATTAA+TGG | - | chr4_2:5038121-5038140 | Msa0584880:intron | 30.0% | |
| TGTTGTTGCGTTGAATTAAT+GGG | - | chr4_2:5038122-5038141 | Msa0584880:intron | 30.0% | |
| CAACATGCCATATAAAGAAA+TGG | - | chr4_2:5038158-5038177 | Msa0584880:intron | 30.0% | |
| ATTCGTAAGTAACAAGTGTT+TGG | - | chr4_2:5038259-5038278 | Msa0584880:intron | 30.0% | |
| ! | TTCATAACAAGTGTTTCTGA+TGG | - | chr4_2:5038343-5038362 | Msa0584880:intron | 30.0% |
| TCCATATGATAATTTCCTGA+AGG | - | chr4_2:5038539-5038558 | Msa0584880:intron | 30.0% | |
| TTGATATACAAGAAGATCCA+TGG | - | chr4_2:5038622-5038641 | Msa0584880:intron | 30.0% | |
| ! | TCATGAAATGACCAAGTTTT+GGG | + | chr4_2:5038962-5038981 | None:intergenic | 30.0% |
| ! | TTCATGAAATGACCAAGTTT+TGG | + | chr4_2:5038963-5038982 | None:intergenic | 30.0% |
| CAAAAGAAGTTGTAAGGTTA+GGG | + | chr4_2:5039435-5039454 | None:intergenic | 30.0% | |
| ACAAAAGAAGTTGTAAGGTT+AGG | + | chr4_2:5039436-5039455 | None:intergenic | 30.0% | |
| TTTGAACAAACCTTCTTTGA+AGG | + | chr4_2:5039515-5039534 | None:intergenic | 30.0% | |
| TTCAAAAACCATGTTCAAGA+AGG | - | chr4_2:5039529-5039548 | Msa0584880:intron | 30.0% | |
| !! | TTTTAAAAAAGCTGGCCATA+AGG | + | chr4_2:5039568-5039587 | None:intergenic | 30.0% |
| ! | TTTTTATAAATAGGACCGCA+TGG | - | chr4_2:5039744-5039763 | Msa0584880:intron | 30.0% |
| TGTTATCATCAAAACTTCAG+AGG | + | chr4_2:5039865-5039884 | None:intergenic | 30.0% | |
| ! | GAATCAAGTTTTTGTTCTGT+AGG | - | chr4_2:5039963-5039982 | Msa0584880:intron | 30.0% |
| TTTGAGAGAAGCTGAAATTA+TGG | - | chr4_2:5040019-5040038 | Msa0584880:intron | 30.0% | |
| ! | TCAATCTTTTAATGTTGACG+TGG | + | chr4_2:5040093-5040112 | None:intergenic | 30.0% |
| !!! | CTAGTTTTATCTTCTTCTGA+AGG | - | chr4_2:5040113-5040132 | Msa0584880:intron | 30.0% |
| !! | TTTTATCTTCTTCTGAAGGA+AGG | - | chr4_2:5040117-5040136 | Msa0584880:intron | 30.0% |
| GAAACAAACAAACAACTTCA+AGG | - | chr4_2:5040190-5040209 | Msa0584880:intron | 30.0% | |
| GATATGGTTATTGTCTTGAA+AGG | + | chr4_2:5040268-5040287 | None:intergenic | 30.0% | |
| ! | CTTTTGAATTTGACAGAGTA+AGG | + | chr4_2:5040435-5040454 | None:intergenic | 30.0% |
| TTAGGATTTCAGATAACCTA+GGG | + | chr4_2:5040775-5040794 | None:intergenic | 30.0% | |
| ATTAGGATTTCAGATAACCT+AGG | + | chr4_2:5040776-5040795 | None:intergenic | 30.0% | |
| TGTTGTCAAATTTGTGTAAC+AGG | + | chr4_2:5040954-5040973 | None:intergenic | 30.0% | |
| GACGACTAAAAGAAGTAAAA+AGG | + | chr4_2:5041257-5041276 | None:intergenic | 30.0% | |
| !!! | GAAGACTATTGGGTTTTTTA+GGG | + | chr4_2:5041285-5041304 | None:intergenic | 30.0% |
| !!! | TGAAGACTATTGGGTTTTTT+AGG | + | chr4_2:5041286-5041305 | None:intergenic | 30.0% |
| ! | CAAGATGTTGTTGATAAATC+AGG | + | chr4_2:5041898-5041917 | None:intergenic | 30.0% |
| !! | AAAATTGATTTGGATCGGTT+CGG | + | chr4_2:5042184-5042203 | None:intergenic | 30.0% |
| ! | CCGATCCAAATCAATTTTTA+TGG | - | chr4_2:5042186-5042205 | Msa0584880:intron | 30.0% |
| CCGTACCATAAAAATTGATT+TGG | + | chr4_2:5042194-5042213 | None:intergenic | 30.0% | |
| TCCCAAAAAATTACCAAAAG+AGG | - | chr4_2:5042449-5042468 | Msa0584880:intron | 30.0% | |
| !!! | CTTTATCCTCTCTAGTTTTT+CGG | + | chr4_2:5042686-5042705 | None:intergenic | 30.0% |
| !!! | TTCACTGTCGTTTTAAGTTT+TGG | + | chr4_2:5042764-5042783 | None:intergenic | 30.0% |
| ACAATGTGTTCATGAACAAA+TGG | - | chr4_2:5042945-5042964 | Msa0584880:intron | 30.0% | |
| TTCATGAAAAGAAATTGACG+GGG | - | chr4_2:5043002-5043021 | Msa0584880:intron | 30.0% | |
| !! | GACTGATTTTAAATTGATGG+TGG | + | chr4_2:5043562-5043581 | None:intergenic | 30.0% |
| TGATTGATATAGACTGAATG+GGG | + | chr4_2:5043887-5043906 | None:intergenic | 30.0% | |
| GTGATTGATATAGACTGAAT+GGG | + | chr4_2:5043888-5043907 | None:intergenic | 30.0% | |
| AGTGATTGATATAGACTGAA+TGG | + | chr4_2:5043889-5043908 | None:intergenic | 30.0% | |
| ! | TGTTGATGTTCAACATTTTG+TGG | + | chr4_2:5044138-5044157 | None:intergenic | 30.0% |
| ! | TGTTCAACATTTTGTGGTTG+AGG | + | chr4_2:5036333-5036352 | None:intergenic | 35.0% |
| !! | GGTTGATGTTCAACATTTTG+TGG | + | chr4_2:5036339-5036358 | None:intergenic | 35.0% |
| ! | TGATGTTCAACATTTTGTGG+TGG | + | chr4_2:5036336-5036355 | None:intergenic | 35.0% |
| !! | GGTTGATGTTCAACATTTTG+TGG | + | chr4_2:5036339-5036358 | None:intergenic | 35.0% |
| TCTCATTCATCTGGTGTATA+AGG | + | chr4_2:5036501-5036520 | None:intergenic | 35.0% | |
| GTAACATTCACTCTTGCTAA+TGG | + | chr4_2:5036880-5036899 | None:intergenic | 35.0% | |
| GGACAATGCATAGTATATGT+AGG | + | chr4_2:5037451-5037470 | None:intergenic | 35.0% | |
| !! | TCGTCTAATAAGGCTTTGTT+TGG | - | chr4_2:5037573-5037592 | Msa0584880:intron | 35.0% |
| !! | CGTCTAATAAGGCTTTGTTT+GGG | - | chr4_2:5037574-5037593 | Msa0584880:intron | 35.0% |
| !! | TAATAAGGCTTTGTTTGGGA+GGG | - | chr4_2:5037578-5037597 | Msa0584880:intron | 35.0% |
| !!! | TTTTTGTTTTGTTTTGGGGG+GGG | + | chr4_2:5037642-5037661 | None:intergenic | 35.0% |
| AATAGAGGACATTGAGAGAA+GGG | + | chr4_2:5037747-5037766 | None:intergenic | 35.0% | |
| AAATAGAGGACATTGAGAGA+AGG | + | chr4_2:5037748-5037767 | None:intergenic | 35.0% | |
| TTTGCAAATTTGGAGGAGAA+GGG | + | chr4_2:5037817-5037836 | None:intergenic | 35.0% | |
| TCACACACACATTCTCAATT+AGG | + | chr4_2:5037850-5037869 | None:intergenic | 35.0% | |
| TGGAGAGCCATTTCTTTATA+TGG | + | chr4_2:5038168-5038187 | None:intergenic | 35.0% | |
| ACAGAAGATTTCCACTTTCA+TGG | - | chr4_2:5038215-5038234 | Msa0584880:intron | 35.0% | |
| CAGAAGATTTCCACTTTCAT+GGG | - | chr4_2:5038216-5038235 | Msa0584880:intron | 35.0% | |
| CGAATTCGAAAGTAACGAAA+GGG | + | chr4_2:5038244-5038263 | None:intergenic | 35.0% | |
| ACGAATTCGAAAGTAACGAA+AGG | + | chr4_2:5038245-5038264 | None:intergenic | 35.0% | |
| AGAAAGTAAAGCAGTACGAA+AGG | + | chr4_2:5038311-5038330 | None:intergenic | 35.0% | |
| ACAAAAATGGCACATGAATC+AGG | + | chr4_2:5038386-5038405 | None:intergenic | 35.0% | |
| TTTCCACTCTGCAACAAAAA+TGG | + | chr4_2:5038399-5038418 | None:intergenic | 35.0% | |
| CCTAAGTTTGAATCCAAGAA+TGG | + | chr4_2:5038423-5038442 | None:intergenic | 35.0% | |
| CCATTCTTGGATTCAAACTT+AGG | - | chr4_2:5038420-5038439 | Msa0584880:intron | 35.0% | |
| GCCTTCAGGAAATTATCATA+TGG | + | chr4_2:5038543-5038562 | None:intergenic | 35.0% | |
| ! | CTGATAACACAACTTTTCCA+TGG | + | chr4_2:5038642-5038661 | None:intergenic | 35.0% |
| TAAATATTGTTGCCAATCCG+CGG | + | chr4_2:5038674-5038693 | None:intergenic | 35.0% | |
| !! | CGGATTGGCAACAATATTTA+TGG | - | chr4_2:5038674-5038693 | Msa0584880:intron | 35.0% |
| !!! | TGTTTTGGTCCCTTATACAT+TGG | - | chr4_2:5038711-5038730 | Msa0584880:intron | 35.0% |
| GGAAGCAAACCAATGTATAA+GGG | + | chr4_2:5038723-5038742 | None:intergenic | 35.0% | |
| TGGAAGCAAACCAATGTATA+AGG | + | chr4_2:5038724-5038743 | None:intergenic | 35.0% | |
| !! | CAAGGAGGTGTATCTTTTAT+CGG | - | chr4_2:5038745-5038764 | Msa0584880:intron | 35.0% |
| !!! | TTTTCGGAGCTGTATTGATT+TGG | - | chr4_2:5038780-5038799 | Msa0584880:intron | 35.0% |
| !! | TGTATTGATTTGGTGTGCAT+AGG | - | chr4_2:5038790-5038809 | Msa0584880:intron | 35.0% |
| AAGGACAACGAAGATTAGAA+AGG | + | chr4_2:5038863-5038882 | None:intergenic | 35.0% | |
| !!! | TCGTTGTCCTTCAACTTTTT+TGG | - | chr4_2:5038872-5038891 | Msa0584880:intron | 35.0% |
| TCACACACCAAAAAAGTTGA+AGG | + | chr4_2:5038882-5038901 | None:intergenic | 35.0% | |
| CATCACAAGTCACTCTTAAA+AGG | - | chr4_2:5039181-5039200 | Msa0584880:intron | 35.0% | |
| CTTTCTGAACCTATGAAGTA+CGG | + | chr4_2:5039352-5039371 | None:intergenic | 35.0% | |
| AGGTTGAAATCCTTCAAAGA+AGG | - | chr4_2:5039502-5039521 | Msa0584880:intron | 35.0% | |
| ! | TGGAGTATTTACTTGGACTA+GGG | + | chr4_2:5039609-5039628 | None:intergenic | 35.0% |
| ! | ATGGAGTATTTACTTGGACT+AGG | + | chr4_2:5039610-5039629 | None:intergenic | 35.0% |
| TCAACGTGTTGAGTCAAAAT+TGG | - | chr4_2:5039825-5039844 | Msa0584880:intron | 35.0% | |
| !! | AATTATGGACTAGACTCTGA+AGG | - | chr4_2:5040034-5040053 | Msa0584880:intron | 35.0% |
| ! | ATTTTGTCGTCTTCTGACTA+CGG | - | chr4_2:5040164-5040183 | Msa0584880:intron | 35.0% |
| GGTTGGAATGTTTCTTGATA+TGG | + | chr4_2:5040284-5040303 | None:intergenic | 35.0% | |
| AGAAACTTATTCCATGAGGT+TGG | + | chr4_2:5040301-5040320 | None:intergenic | 35.0% | |
| CTTGAGAAACTTATTCCATG+AGG | + | chr4_2:5040305-5040324 | None:intergenic | 35.0% | |
| CTCATGGAATAAGTTTCTCA+AGG | - | chr4_2:5040303-5040322 | Msa0584880:intron | 35.0% | |
| CTCAGATTTCTCTCCATATA+AGG | - | chr4_2:5040360-5040379 | Msa0584880:intron | 35.0% | |
| ! | CAAGTCTTATGCTCCTTATA+TGG | + | chr4_2:5040376-5040395 | None:intergenic | 35.0% |
| CACAAGAAAAAGACTTTCTC+TGG | + | chr4_2:5040631-5040650 | None:intergenic | 35.0% | |
| CACAAGAAAGAGACTTCAAA+TGG | + | chr4_2:5040661-5040680 | None:intergenic | 35.0% | |
| !! | GGTTTCTGAAGTGGTATATT+AGG | + | chr4_2:5040754-5040773 | None:intergenic | 35.0% |
| !! | GTGGATTAGGATTTCAGATT+AGG | + | chr4_2:5040793-5040812 | None:intergenic | 35.0% |
| CAAAGGAACTACATTTGAAG+AGG | - | chr4_2:5040972-5040991 | Msa0584880:intron | 35.0% | |
| AAGAGGCAATAATTTGATCC+CGG | - | chr4_2:5040989-5041008 | Msa0584880:intron | 35.0% | |
| TTACGAATGAAACATGATCC+GGG | + | chr4_2:5041010-5041029 | None:intergenic | 35.0% | |
| CTTACGAATGAAACATGATC+CGG | + | chr4_2:5041011-5041030 | None:intergenic | 35.0% | |
| !! | TTGAGAATTTCTAGTTGCCA+AGG | + | chr4_2:5041113-5041132 | None:intergenic | 35.0% |
| TGAAACGTTAGTCGAAGTAA+GGG | + | chr4_2:5041213-5041232 | None:intergenic | 35.0% | |
| ATGAAACGTTAGTCGAAGTA+AGG | + | chr4_2:5041214-5041233 | None:intergenic | 35.0% | |
| ! | AGGAAAAGGACAAGTTTGTT+TGG | + | chr4_2:5041237-5041256 | None:intergenic | 35.0% |
| AAATCTTGAGTGACCTTCTT+GGG | + | chr4_2:5041570-5041589 | None:intergenic | 35.0% | |
| TAAATCTTGAGTGACCTTCT+TGG | + | chr4_2:5041571-5041590 | None:intergenic | 35.0% | |
| AATTCAAGACCCGATGAAAT+AGG | + | chr4_2:5041757-5041776 | None:intergenic | 35.0% | |
| !! | TTAACGGGCTTAACAAAGTT+AGG | + | chr4_2:5041858-5041877 | None:intergenic | 35.0% |
| !! | CTCAAGGCATCATTTTTAGA+AGG | + | chr4_2:5042016-5042035 | None:intergenic | 35.0% |
| ! | CGATGAATTCTTCATTGGTT+CGG | + | chr4_2:5042243-5042262 | None:intergenic | 35.0% |
| CGAACCAATGAAGAATTCAT+CGG | - | chr4_2:5042241-5042260 | Msa0584880:intron | 35.0% | |
| TAGGGTGTAACAATTCTGTA+TGG | + | chr4_2:5042295-5042314 | None:intergenic | 35.0% | |
| !!! | GTGAATCTTCTTGCTACTTT+TGG | + | chr4_2:5042420-5042439 | None:intergenic | 35.0% |
| TGTAGTCATGGAATTTGGAA+AGG | + | chr4_2:5042559-5042578 | None:intergenic | 35.0% | |
| GATTAACCGAAAAACTAGAG+AGG | - | chr4_2:5042677-5042696 | Msa0584880:intron | 35.0% | |
| TTCGTCGCGATAAATATTCA+TGG | + | chr4_2:5043187-5043206 | None:intergenic | 35.0% | |
| ! | TGTTCAACATTTTGTGGTTG+AGG | + | chr4_2:5036333-5036352 | None:intergenic | 35.0% |
| !! | GGTTGATGTTCAACATTTTG+TGG | + | chr4_2:5036339-5036358 | None:intergenic | 35.0% |
| ! | TCAACATTTTGTGGTAGAGT+TGG | + | chr4_2:5044129-5044148 | None:intergenic | 35.0% |
| ! | TTTGGTTCAGGCTGGTTATT+TGG | + | chr4_2:5036300-5036319 | None:intergenic | 40.0% |
| AAGTCAAATGGTTGCACATG+TGG | + | chr4_2:5036441-5036460 | None:intergenic | 40.0% | |
| CTGGTGTATAAGGTAGATTG+AGG | + | chr4_2:5036491-5036510 | None:intergenic | 40.0% | |
| ! | ATTTTGTGTGCGAAGATGTG+AGG | - | chr4_2:5036968-5036987 | Msa0584880:intron | 40.0% |
| ! | TTTTGTGTGCGAAGATGTGA+GGG | - | chr4_2:5036969-5036988 | Msa0584880:intron | 40.0% |
| AAGTGTGTGTTTGTGTGTGA+AGG | - | chr4_2:5037139-5037158 | Msa0584880:intron | 40.0% | |
| ! | TGAGCTTAACTCAGTTGGTA+GGG | + | chr4_2:5037472-5037491 | None:intergenic | 40.0% |
| GGGTTTATGTGAGCAATTGA+TGG | - | chr4_2:5037538-5037557 | Msa0584880:intron | 40.0% | |
| !! | CTAATAAGGCTTTGTTTGGG+AGG | - | chr4_2:5037577-5037596 | Msa0584880:intron | 40.0% |
| !! | AATAAGGCTTTGTTTGGGAG+GGG | - | chr4_2:5037579-5037598 | Msa0584880:intron | 40.0% |
| !!! | TTTTGTTTTGTTTTGGGGGG+GGG | + | chr4_2:5037641-5037660 | None:intergenic | 40.0% |
| ACATTGAGAGAAGGGACTTT+GGG | + | chr4_2:5037739-5037758 | None:intergenic | 40.0% | |
| GTTTGCAAATTTGGAGGAGA+AGG | + | chr4_2:5037818-5037837 | None:intergenic | 40.0% | |
| !! | GGAAATCTTCTGTTGCTTTC+CGG | + | chr4_2:5038208-5038227 | None:intergenic | 40.0% |
| TACGAAAGGCAAACTCAAAC+TGG | + | chr4_2:5038297-5038316 | None:intergenic | 40.0% | |
| TAAAAGATACACCTCCTTGC+TGG | + | chr4_2:5038744-5038763 | None:intergenic | 40.0% | |
| ! | TCGGCTTCCTTGCAATTTTT+CGG | - | chr4_2:5038764-5038783 | Msa0584880:intron | 40.0% |
| TACAGCTCCGAAAAATTGCA+AGG | + | chr4_2:5038774-5038793 | None:intergenic | 40.0% | |
| !! | ATTTGGTGTGCATAGGTTAC+AGG | - | chr4_2:5038797-5038816 | Msa0584880:intron | 40.0% |
| ATCTGCAATGACCCAAAACT+TGG | - | chr4_2:5038948-5038967 | Msa0584880:intron | 40.0% | |
| GTGTTCAGAACTATGAAGCA+CGG | - | chr4_2:5039205-5039224 | Msa0584880:intron | 40.0% | |
| GAACCTATGAAGTACGGATA+CGG | + | chr4_2:5039346-5039365 | None:intergenic | 40.0% | |
| CGTACTTCATAGGTTCAGAA+AGG | - | chr4_2:5039350-5039369 | Msa0584880:intron | 40.0% | |
| AATTCAGTCCCACTTCTACT+CGG | - | chr4_2:5039391-5039410 | Msa0584880:intron | 40.0% | |
| ! | GATCGGATGGAGTATTTACT+TGG | + | chr4_2:5039616-5039635 | None:intergenic | 40.0% |
| TCAGAGTCTGAGTCATTTGT+TGG | + | chr4_2:5040067-5040086 | None:intergenic | 40.0% | |
| ! | TTTTGTCGTCTTCTGACTAC+GGG | - | chr4_2:5040165-5040184 | Msa0584880:intron | 40.0% |
| CAAGAAACATTCCAACCTCA+TGG | - | chr4_2:5040287-5040306 | Msa0584880:intron | 40.0% | |
| TACGCTTGATATGCAATCAG+AGG | + | chr4_2:5040545-5040564 | None:intergenic | 40.0% | |
| !! | AGTGACTTGCTTCTACACAA+TGG | + | chr4_2:5040725-5040744 | None:intergenic | 40.0% |
| TATACCACTTCAGAAACCCT+AGG | - | chr4_2:5040756-5040775 | Msa0584880:intron | 40.0% | |
| ! | ATAACCTAGGGTTTCTGAAG+TGG | + | chr4_2:5040763-5040782 | None:intergenic | 40.0% |
| ! | TGTTTGTGTGGACTGAGTAA+AGG | - | chr4_2:5040902-5040921 | Msa0584880:intron | 40.0% |
| TAAAGGCAATGCCAATTGAG+TGG | - | chr4_2:5040919-5040938 | Msa0584880:intron | 40.0% | |
| CGGATCATGTTTCATTCGTA+AGG | - | chr4_2:5041009-5041028 | Msa0584880:intron | 40.0% | |
| TTTCCCTTCATTACTCACCT+TGG | - | chr4_2:5041093-5041112 | Msa0584880:intron | 40.0% | |
| TTGCCAAGGTGAGTAATGAA+GGG | + | chr4_2:5041099-5041118 | None:intergenic | 40.0% | |
| CATTTGTCGCTCAAAGTTCA+TGG | - | chr4_2:5041354-5041373 | Msa0584880:intron | 40.0% | |
| ! | CGACAAGTTTTTACCCAAGA+AGG | - | chr4_2:5041554-5041573 | Msa0584880:intron | 40.0% |
| ATGATGCCTTGAGAAAAGTC+CGG | - | chr4_2:5042023-5042042 | Msa0584880:intron | 40.0% | |
| CGAACCGATGAATTCTTCAT+TGG | + | chr4_2:5042248-5042267 | None:intergenic | 40.0% | |
| CGAGTTGTAGTCATGGAATT+TGG | + | chr4_2:5042564-5042583 | None:intergenic | 40.0% | |
| AAACTCACGAGTTGTAGTCA+TGG | + | chr4_2:5042571-5042590 | None:intergenic | 40.0% | |
| GGGATGTAAACAAGAAGAGA+AGG | - | chr4_2:5042738-5042757 | Msa0584880:intron | 40.0% | |
| TTGTGTCACATTCACTGCAT+AGG | + | chr4_2:5036188-5036207 | None:intergenic | 40.0% | |
| AAGTCAAATGGTTGCACATG+TGG | + | chr4_2:5036441-5036460 | None:intergenic | 40.0% | |
| ACTGCTAAAGCTTCTCGAGA+TGG | + | chr4_2:5036216-5036235 | None:intergenic | 45.0% | |
| !!! | GAGCATTTTTTGGTTCAGGC+TGG | + | chr4_2:5036308-5036327 | None:intergenic | 45.0% |
| !!! | GGCTGAGCATTTTTTGGTTC+AGG | + | chr4_2:5036312-5036331 | None:intergenic | 45.0% |
| !!! | GGTTGAGGCTGAGCATTTTT+TGG | + | chr4_2:5036318-5036337 | None:intergenic | 45.0% |
| !! | TCAACATTTTGTGGTGGAGC+TGG | + | chr4_2:5036372-5036391 | None:intergenic | 45.0% |
| TCAAATGGTTGCACATGTGG+AGG | + | chr4_2:5036438-5036457 | None:intergenic | 45.0% | |
| ! | GGAGGTTGGTTCAAGTCAAA+TGG | + | chr4_2:5036453-5036472 | None:intergenic | 45.0% |
| TTGAGGTCGAAAGCTTGAAC+AGG | + | chr4_2:5036474-5036493 | None:intergenic | 45.0% | |
| GTGAGCTTAACTCAGTTGGT+AGG | + | chr4_2:5037473-5037492 | None:intergenic | 45.0% | |
| !!! | TTTGTTTTGTTTTGGGGGGG+GGG | + | chr4_2:5037640-5037659 | None:intergenic | 45.0% |
| CATTGAGAGAAGGGACTTTG+GGG | + | chr4_2:5037738-5037757 | None:intergenic | 45.0% | |
| GACATTGAGAGAAGGGACTT+TGG | + | chr4_2:5037740-5037759 | None:intergenic | 45.0% | |
| GAGTTTGTGTGAGCAATTGC+TGG | - | chr4_2:5037998-5038017 | Msa0584880:intron | 45.0% | |
| !!! | GTGCCATTTTTGTTGCAGAG+TGG | - | chr4_2:5038393-5038412 | Msa0584880:intron | 45.0% |
| GCAGAGTGGAAATCCATTCT+TGG | - | chr4_2:5038407-5038426 | Msa0584880:intron | 45.0% | |
| TTATCATATGGACGCGATGC+TGG | + | chr4_2:5038531-5038550 | None:intergenic | 45.0% | |
| GATAATTTCCTGAAGGCTGC+TGG | - | chr4_2:5038546-5038565 | Msa0584880:intron | 45.0% | |
| ATTAACAACCAGCAGCCTTC+AGG | + | chr4_2:5038557-5038576 | None:intergenic | 45.0% | |
| GTTATCAGCTTTCTTGACCG+CGG | - | chr4_2:5038654-5038673 | Msa0584880:intron | 45.0% | |
| !!! | GCTGCATCGATGTGTTGTTT+TGG | - | chr4_2:5038696-5038715 | Msa0584880:intron | 45.0% |
| !! | ACATTGGTTTGCTTCCAGCA+AGG | - | chr4_2:5038727-5038746 | Msa0584880:intron | 45.0% |
| TGTCCGTATCCGTACTTCAT+AGG | - | chr4_2:5039340-5039359 | Msa0584880:intron | 45.0% | |
| ! | AGTTTGCAAAAGCGCGCAAT+TGG | - | chr4_2:5039886-5039905 | Msa0584880:intron | 45.0% |
| ! | GTTTGCAAAAGCGCGCAATT+GGG | - | chr4_2:5039887-5039906 | Msa0584880:intron | 45.0% |
| CAATTGGGTATGCGAATGTG+TGG | - | chr4_2:5039902-5039921 | Msa0584880:intron | 45.0% | |
| ! | AGGGCACTTGCAAAAGTTCA+GGG | + | chr4_2:5040415-5040434 | None:intergenic | 45.0% |
| !! | AAGGGCACTTGCAAAAGTTC+AGG | + | chr4_2:5040416-5040435 | None:intergenic | 45.0% |
| ACTCATAGTGCTAGCTGCTA+CGG | + | chr4_2:5040873-5040892 | None:intergenic | 45.0% | |
| AGTGGAGTTGACTGTTTGTG+TGG | - | chr4_2:5040890-5040909 | Msa0584880:intron | 45.0% | |
| GTTGCCAAGGTGAGTAATGA+AGG | + | chr4_2:5041100-5041119 | None:intergenic | 45.0% | |
| ! | TATGGACCGGACTTTTCTCA+AGG | + | chr4_2:5042032-5042051 | None:intergenic | 45.0% |
| CGGCTAAACTCAATTCGCAT+CGG | + | chr4_2:5043466-5043485 | None:intergenic | 45.0% | |
| ACTGCTAAAGCTTCTCGAGA+TGG | + | chr4_2:5036216-5036235 | None:intergenic | 45.0% | |
| ! | TGGTTGAGGCTGAGCATTTT+CGG | + | chr4_2:5036319-5036338 | None:intergenic | 45.0% |
| !!! | GGTAGAGTTGGTGCATTTTG+TGG | + | chr4_2:5044117-5044136 | None:intergenic | 45.0% |
| TCAAATGGTTGCACATGTGG+AGG | + | chr4_2:5036438-5036457 | None:intergenic | 45.0% | |
| CTGGTGTATAAGGGAGATTG+AGG | + | chr4_2:5044248-5044267 | None:intergenic | 45.0% | |
| !!! | TTTAAAATTTTGATTAATAA+TGG | - | chr4_2:5036942-5036961 | Msa0584880:intron | 5.0% |
| !!! | ATACTTTTAATTTAATTATA+TGG | + | chr4_2:5039942-5039961 | None:intergenic | 5.0% |
| !! | AATCAAATAAAAAATTATTT+GGG | + | chr4_2:5040571-5040590 | None:intergenic | 5.0% |
| !! | TAATCAAATAAAAAATTATT+TGG | + | chr4_2:5040572-5040591 | None:intergenic | 5.0% |
| ! | TCAGGCTGGTTATTTGGTGG+TGG | + | chr4_2:5036294-5036313 | None:intergenic | 50.0% |
| ! | GGTTCAGGCTGGTTATTTGG+TGG | + | chr4_2:5036297-5036316 | None:intergenic | 50.0% |
| ! | TGTGGAGGTGGTGCATTTTG+TGG | + | chr4_2:5036423-5036442 | None:intergenic | 50.0% |
| AATGGTTGCACATGTGGAGG+TGG | + | chr4_2:5036435-5036454 | None:intergenic | 50.0% | |
| CGAAAGCTTGAACAGGAGGT+TGG | + | chr4_2:5036467-5036486 | None:intergenic | 50.0% | |
| AGGTCGAAAGCTTGAACAGG+AGG | + | chr4_2:5036471-5036490 | None:intergenic | 50.0% | |
| CCTCGTGAGCTTAACTCAGT+TGG | + | chr4_2:5037477-5037496 | None:intergenic | 50.0% | |
| CCAACTGAGTTAAGCTCACG+AGG | - | chr4_2:5037474-5037493 | Msa0584880:intron | 50.0% | |
| TTTGTTTGGGAGGGGAAGGA+AGG | - | chr4_2:5037587-5037606 | Msa0584880:intron | 50.0% | |
| TTGTTTGGGAGGGGAAGGAA+GGG | - | chr4_2:5037588-5037607 | Msa0584880:intron | 50.0% | |
| !!! | TTGTTTTGTTTTGGGGGGGG+GGG | + | chr4_2:5037639-5037658 | None:intergenic | 50.0% |
| GAGAAGGGAGATGAGGGTTT+GGG | + | chr4_2:5037802-5037821 | None:intergenic | 50.0% | |
| TTGGAGGAGAAGGGAGATGA+GGG | + | chr4_2:5037808-5037827 | None:intergenic | 50.0% | |
| TTTGGAGGAGAAGGGAGATG+AGG | + | chr4_2:5037809-5037828 | None:intergenic | 50.0% | |
| TAAGCTGTGGCGCAAAGCAT+TGG | + | chr4_2:5038480-5038499 | None:intergenic | 50.0% | |
| TGCTGGCAGTTGAAAGAAGG+CGG | + | chr4_2:5038514-5038533 | None:intergenic | 50.0% | |
| CGATGCTGGCAGTTGAAAGA+AGG | + | chr4_2:5038517-5038536 | None:intergenic | 50.0% | |
| !! | TTGGTTTGCTTCCAGCAAGG+AGG | - | chr4_2:5038730-5038749 | Msa0584880:intron | 50.0% |
| TATGAAGCACGGACACTCCT+CGG | - | chr4_2:5039216-5039235 | Msa0584880:intron | 50.0% | |
| CACAAACACCGAACACGACA+CGG | + | chr4_2:5039322-5039341 | None:intergenic | 50.0% | |
| AGACACGACCGAGTAGAAGT+GGG | + | chr4_2:5039402-5039421 | None:intergenic | 50.0% | |
| AAGACACGACCGAGTAGAAG+TGG | + | chr4_2:5039403-5039422 | None:intergenic | 50.0% | |
| TCTACTCGGTCGTGTCTTGA+TGG | - | chr4_2:5039405-5039424 | Msa0584880:intron | 50.0% | |
| GGACTAGGGCTATTCCAAGA+AGG | + | chr4_2:5039595-5039614 | None:intergenic | 50.0% | |
| GGCACTTGCAAAAGTTCAGG+GGG | + | chr4_2:5040413-5040432 | None:intergenic | 50.0% | |
| GGGCACTTGCAAAAGTTCAG+GGG | + | chr4_2:5040414-5040433 | None:intergenic | 50.0% | |
| ! | GAGAGAGAGAGAGGTGGATT+AGG | + | chr4_2:5040806-5040825 | None:intergenic | 50.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr4_2:5041440-5041459 | None:intergenic | 50.0% | |
| TAGTGCTAGCTGCTACGGAA+AGG | + | chr4_2:5040868-5040887 | None:intergenic | 50.0% | |
| GTAGCAGCTAGCACTATGAG+TGG | - | chr4_2:5040872-5040891 | Msa0584880:intron | 50.0% | |
| GGTCACAAGCACCACTCAAT+TGG | + | chr4_2:5040933-5040952 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+CGG | - | chr4_2:5041440-5041459 | Msa0584880:intron | 50.0% | |
| ! | TCAGGCTGGTTATTTGGTGG+TGG | + | chr4_2:5036294-5036313 | None:intergenic | 50.0% |
| ! | GGTTCAGGCTGGTTATTTGG+TGG | + | chr4_2:5036297-5036316 | None:intergenic | 50.0% |
| ! | TCGGGTTCAGGCTGGTTATT+TGG | + | chr4_2:5044057-5044076 | None:intergenic | 50.0% |
| ! | GGTTGAGGCTGAGCATTTTC+GGG | + | chr4_2:5044075-5044094 | None:intergenic | 50.0% |
| ! | TGTGGAGGTGGTGCATTTTG+TGG | + | chr4_2:5036423-5036442 | None:intergenic | 50.0% |
| AATGGTTGCACATGTGGAGG+TGG | + | chr4_2:5036435-5036454 | None:intergenic | 50.0% | |
| ! | GGAGGCTGGTTCAAGTCAAA+TGG | + | chr4_2:5044210-5044229 | None:intergenic | 50.0% |
| TTGAGGTCGAAAGCTCGAAC+AGG | + | chr4_2:5044231-5044250 | None:intergenic | 50.0% | |
| ! | GGTGGAGCTGGTGCATTTTG+TGG | + | chr4_2:5036360-5036379 | None:intergenic | 55.0% |
| ! | GGTGGAGCTGGTGCATTTTG+TGG | + | chr4_2:5036360-5036379 | None:intergenic | 55.0% |
| !! | GGTGCATTTTGTGGTGGAGC+TGG | + | chr4_2:5036414-5036433 | None:intergenic | 55.0% |
| ! | GGAGGTGGTGCATTTTGTGG+TGG | + | chr4_2:5036420-5036439 | None:intergenic | 55.0% |
| AGGGGTCAGAGTTCGAACAC+CGG | + | chr4_2:5037431-5037450 | None:intergenic | 55.0% | |
| !! | AGGCTTTGTTTGGGAGGGGA+AGG | - | chr4_2:5037583-5037602 | Msa0584880:intron | 55.0% |
| !!! | TGTTTTGTTTTGGGGGGGGG+GGG | + | chr4_2:5037638-5037657 | None:intergenic | 55.0% |
| GGAGAAGGGAGATGAGGGTT+TGG | + | chr4_2:5037803-5037822 | None:intergenic | 55.0% | |
| CATTGTGAGAACCTCCTCGC+CGG | - | chr4_2:5038186-5038205 | Msa0584880:intron | 55.0% | |
| !! | TCTTCTGTTGCTTTCCGGCG+AGG | + | chr4_2:5038203-5038222 | None:intergenic | 55.0% |
| !! | TCAGGCAATGTGGTGGGTGA+CGG | + | chr4_2:5038450-5038469 | None:intergenic | 55.0% |
| !! | CAAAGCATTGGACCGGTCTC+AGG | + | chr4_2:5038468-5038487 | None:intergenic | 55.0% |
| !! | TGTGGCGCAAAGCATTGGAC+CGG | + | chr4_2:5038475-5038494 | None:intergenic | 55.0% |
| CAGCTTTCTTGACCGCGGAT+TGG | - | chr4_2:5038659-5038678 | Msa0584880:intron | 55.0% | |
| GTCATGTCACGCCTAATCCG+AGG | + | chr4_2:5039236-5039255 | None:intergenic | 55.0% | |
| GTCAGTGTCCGTGTCGTGTT+CGG | - | chr4_2:5039311-5039330 | Msa0584880:intron | 55.0% | |
| GAGAGAGAGAGAGAGAGAGG+TGG | + | chr4_2:5040812-5040831 | None:intergenic | 55.0% | |
| TGCTAGCTGCTACGGAAAGG+AGG | + | chr4_2:5040865-5040884 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGAGAGC+GGG | - | chr4_2:5041443-5041462 | Msa0584880:intron | 55.0% | |
| AGAGAGAGAGAGAGAGAGCG+GGG | - | chr4_2:5041444-5041463 | Msa0584880:intron | 55.0% | |
| !!! | GAGCATTTTCGGGTTCAGGC+TGG | + | chr4_2:5044065-5044084 | None:intergenic | 55.0% |
| !!! | GGCTGAGCATTTTCGGGTTC+AGG | + | chr4_2:5044069-5044088 | None:intergenic | 55.0% |
| !! | GGTGCATTTTGTGGTGGAGC+TGG | + | chr4_2:5036414-5036433 | None:intergenic | 55.0% |
| ! | GGAGGTGGTGCATTTTGTGG+TGG | + | chr4_2:5036420-5036439 | None:intergenic | 55.0% |
| AGGTCGAAAGCTCGAACAGG+AGG | + | chr4_2:5044228-5044247 | None:intergenic | 55.0% | |
| !!! | TTTTGTTTTGGGGGGGGGGG+GGG | + | chr4_2:5037636-5037655 | None:intergenic | 60.0% |
| !!! | GTTTTGTTTTGGGGGGGGGG+GGG | + | chr4_2:5037637-5037656 | None:intergenic | 60.0% |
| CGGCGAGGAGGTTCTCACAA+TGG | + | chr4_2:5038188-5038207 | None:intergenic | 60.0% | |
| !! | TCTGTTGCTTTCCGGCGAGG+AGG | + | chr4_2:5038200-5038219 | None:intergenic | 60.0% |
| !! | CGAAAGGGCGCCCATGAAAG+TGG | + | chr4_2:5038229-5038248 | None:intergenic | 60.0% |
| CCGGTCTCAGGCAATGTGGT+GGG | + | chr4_2:5038456-5038475 | None:intergenic | 60.0% | |
| CCCACCACATTGCCTGAGAC+CGG | - | chr4_2:5038453-5038472 | Msa0584880:intron | 60.0% | |
| ACCGGTCTCAGGCAATGTGG+TGG | + | chr4_2:5038457-5038476 | None:intergenic | 60.0% | |
| TGGACCGGTCTCAGGCAATG+TGG | + | chr4_2:5038460-5038479 | None:intergenic | 60.0% | |
| CGCCACAGCTTATCAGCAGC+AGG | - | chr4_2:5038488-5038507 | Msa0584880:intron | 60.0% | |
| GGCCTGCTGCTGATAAGCTG+TGG | + | chr4_2:5038493-5038512 | None:intergenic | 60.0% | |
| GCACGGACACTCCTCGGATT+AGG | - | chr4_2:5039222-5039241 | Msa0584880:intron | 60.0% | |
| GAGAGAGAGAGAGAGAGCGG+GGG | - | chr4_2:5041445-5041464 | Msa0584880:intron | 60.0% | |
| AGAGAGAGAGAGAGAGCGGG+GGG | - | chr4_2:5041446-5041465 | Msa0584880:intron | 60.0% | |
| CGAAAGCTCGAACAGGAGGC+TGG | + | chr4_2:5044224-5044243 | None:intergenic | 60.0% | |
| !!! | TTTGTTTTGGGGGGGGGGGG+GGG | + | chr4_2:5037635-5037654 | None:intergenic | 65.0% |
| GAGAGAGAGAGAGAGCGGGG+GGG | - | chr4_2:5041447-5041466 | Msa0584880:intron | 65.0% | |
| !!! | TTGTTTTGGGGGGGGGGGGG+GGG | + | chr4_2:5037634-5037653 | None:intergenic | 70.0% |
| AGAGAGAGAGAGCGGGGGGG+AGG | - | chr4_2:5041450-5041469 | Msa0584880:intron | 70.0% | |
| GAGAGAGAGAGCGGGGGGGA+GGG | - | chr4_2:5041451-5041470 | Msa0584880:intron | 70.0% | |
| AGAGAGAGAGCGGGGGGGAG+GGG | - | chr4_2:5041452-5041471 | Msa0584880:intron | 70.0% | |
| !!! | TGTTTTGGGGGGGGGGGGGG+GGG | + | chr4_2:5037633-5037652 | None:intergenic | 75.0% |
| GAGAGAGAGCGGGGGGGAGG+GGG | - | chr4_2:5041453-5041472 | Msa0584880:intron | 75.0% | |
| !!! | TTTTGGGGGGGGGGGGGGGG+GGG | + | chr4_2:5037631-5037650 | None:intergenic | 80.0% |
| !!! | GTTTTGGGGGGGGGGGGGGG+GGG | + | chr4_2:5037632-5037651 | None:intergenic | 80.0% |
| ! | TTTGGGGGGGGGGGGGGGGG+GGG | + | chr4_2:5037630-5037649 | None:intergenic | 85.0% |
| ! | TTGGGGGGGGGGGGGGGGGG+GGG | + | chr4_2:5037629-5037648 | None:intergenic | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_2:5037628-5037647 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 5036168 | 5044275 | 5036168 | ID=Msa0584880;Name=Msa0584880 |
| chr4_2 | mRNA | 5036168 | 5044275 | 5036168 | ID=Msa0584880-mRNA-1;Parent=Msa0584880;Name=Msa0584880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0|0|3|0|212 |
| chr4_2 | exon | 5044164 | 5044275 | 5044164 | ID=Msa0584880-mRNA-1:exon:1247;Parent=Msa0584880-mRNA-1 |
| chr4_2 | exon | 5043970 | 5044154 | 5043970 | ID=Msa0584880-mRNA-1:exon:1246;Parent=Msa0584880-mRNA-1 |
| chr4_2 | exon | 5036168 | 5036509 | 5036168 | ID=Msa0584880-mRNA-1:exon:1245;Parent=Msa0584880-mRNA-1 |
| chr4_2 | CDS | 5044164 | 5044275 | 5044164 | ID=Msa0584880-mRNA-1:cds;Parent=Msa0584880-mRNA-1 |
| chr4_2 | CDS | 5043970 | 5044154 | 5043970 | ID=Msa0584880-mRNA-1:cds;Parent=Msa0584880-mRNA-1 |
| chr4_2 | CDS | 5036168 | 5036509 | 5036168 | ID=Msa0584880-mRNA-1:cds;Parent=Msa0584880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
