Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585130 | XP_003605525.1 | 53.247 | 77 | 36 | 0 | 76 | 152 | 155 | 231 | 3.33e-16 | 83.2 |
| Msa0585130 | XP_003605525.1 | 77.778 | 99 | 22 | 0 | 1 | 99 | 1 | 99 | 2.48e-46 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585130 | sp|Q9FJK3|AGL80_ARATH | 56.000 | 100 | 44 | 0 | 1 | 100 | 1 | 100 | 4.73e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0585130 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585130 | MtrunA17_Chr4g0014321 | 77.778 | 99 | 22 | 0 | 1 | 99 | 1 | 99 | 2.28e-50 | 160 |
| Msa0585130 | MtrunA17_Chr4g0014321 | 53.247 | 77 | 36 | 0 | 76 | 152 | 155 | 231 | 3.06e-20 | 83.2 |
| Msa0585130 | MtrunA17_Chr4g0013041 | 72.727 | 99 | 25 | 1 | 1 | 99 | 1 | 97 | 3.82e-46 | 149 |
| Msa0585130 | MtrunA17_Chr8g0351751 | 63.366 | 101 | 35 | 1 | 1 | 99 | 1 | 101 | 1.32e-40 | 136 |
| Msa0585130 | MtrunA17_Chr2g0296831 | 60.185 | 108 | 43 | 0 | 1 | 108 | 1 | 108 | 8.33e-37 | 122 |
| Msa0585130 | MtrunA17_Chr3g0110131 | 61.616 | 99 | 38 | 0 | 1 | 99 | 1 | 99 | 4.23e-35 | 122 |
| Msa0585130 | MtrunA17_Chr3g0107381 | 51.515 | 99 | 48 | 0 | 1 | 99 | 1 | 99 | 1.18e-34 | 120 |
| Msa0585130 | MtrunA17_Chr4g0014031 | 62.626 | 99 | 37 | 0 | 1 | 99 | 1 | 99 | 1.80e-34 | 120 |
| Msa0585130 | MtrunA17_Chr4g0014121 | 65.657 | 99 | 34 | 0 | 1 | 99 | 29 | 127 | 9.66e-34 | 117 |
| Msa0585130 | MtrunA17_Chr3g0107331 | 50.000 | 96 | 48 | 0 | 4 | 99 | 3 | 98 | 3.14e-33 | 115 |
| Msa0585130 | MtrunA17_Chr4g0014131 | 60.606 | 99 | 39 | 0 | 1 | 99 | 1 | 99 | 3.54e-30 | 109 |
| Msa0585130 | MtrunA17_Chr5g0432691 | 47.917 | 96 | 50 | 0 | 1 | 96 | 1 | 96 | 1.14e-28 | 103 |
| Msa0585130 | MtrunA17_Chr2g0283941 | 46.939 | 98 | 52 | 0 | 1 | 98 | 1 | 98 | 1.44e-28 | 105 |
| Msa0585130 | MtrunA17_Chr3g0107361 | 44.211 | 95 | 53 | 0 | 5 | 99 | 4 | 98 | 4.01e-28 | 102 |
| Msa0585130 | MtrunA17_Chr3g0107341 | 45.263 | 95 | 52 | 0 | 5 | 99 | 4 | 98 | 4.66e-28 | 101 |
| Msa0585130 | MtrunA17_Chr3g0107351 | 41.121 | 107 | 63 | 0 | 5 | 111 | 4 | 110 | 1.13e-27 | 100 |
| Msa0585130 | MtrunA17_Chr3g0107461 | 43.617 | 94 | 53 | 0 | 1 | 94 | 1 | 94 | 1.14e-26 | 98.2 |
| Msa0585130 | MtrunA17_Chr5g0420351 | 37.391 | 115 | 71 | 1 | 1 | 115 | 1 | 114 | 1.24e-25 | 95.5 |
| Msa0585130 | MtrunA17_Chr1g0188681 | 42.424 | 99 | 56 | 1 | 1 | 99 | 1 | 98 | 6.43e-25 | 93.6 |
| Msa0585130 | MtrunA17_Chr1g0197261 | 38.596 | 114 | 69 | 1 | 1 | 114 | 1 | 113 | 5.84e-24 | 91.3 |
| Msa0585130 | MtrunA17_Chr1g0197321 | 39.394 | 99 | 59 | 1 | 1 | 99 | 1 | 98 | 5.93e-24 | 91.3 |
| Msa0585130 | MtrunA17_Chr1g0197461 | 42.708 | 96 | 54 | 1 | 4 | 99 | 3 | 97 | 1.06e-23 | 90.5 |
| Msa0585130 | MtrunA17_Chr2g0296861 | 35.789 | 95 | 61 | 0 | 1 | 95 | 1 | 95 | 8.96e-22 | 85.5 |
| Msa0585130 | MtrunA17_Chr7g0267601 | 41.053 | 95 | 56 | 0 | 4 | 98 | 7 | 101 | 6.62e-20 | 85.1 |
| Msa0585130 | MtrunA17_Chr4g0031421 | 49.275 | 69 | 35 | 0 | 29 | 97 | 1 | 69 | 9.36e-20 | 80.1 |
| Msa0585130 | MtrunA17_Chr4g0008701 | 38.947 | 95 | 58 | 0 | 4 | 98 | 7 | 101 | 2.21e-19 | 83.6 |
| Msa0585130 | MtrunA17_Chr3g0105791 | 47.826 | 69 | 36 | 0 | 29 | 97 | 1 | 69 | 6.82e-19 | 77.8 |
| Msa0585130 | MtrunA17_Chr1g0193311 | 41.414 | 99 | 57 | 1 | 1 | 99 | 1 | 98 | 1.13e-18 | 77.4 |
| Msa0585130 | MtrunA17_Chr7g0218151 | 38.384 | 99 | 60 | 1 | 1 | 99 | 1 | 98 | 5.53e-18 | 75.9 |
| Msa0585130 | MtrunA17_Chr3g0106501 | 42.254 | 71 | 41 | 0 | 29 | 99 | 1 | 71 | 1.10e-16 | 72.4 |
| Msa0585130 | MtrunA17_Chr1g0188661 | 37.374 | 99 | 61 | 1 | 1 | 99 | 1 | 98 | 1.74e-16 | 72.0 |
| Msa0585130 | MtrunA17_Chr3g0128721 | 36.667 | 90 | 57 | 0 | 4 | 93 | 7 | 96 | 6.57e-16 | 73.6 |
| Msa0585130 | MtrunA17_Chr4g0012761 | 38.384 | 99 | 60 | 1 | 1 | 99 | 1 | 98 | 1.17e-15 | 69.7 |
| Msa0585130 | MtrunA17_Chr1g0188651 | 40.404 | 99 | 58 | 1 | 1 | 99 | 1 | 98 | 1.57e-15 | 69.3 |
| Msa0585130 | MtrunA17_Chr3g0106421 | 40.000 | 85 | 49 | 1 | 29 | 111 | 1 | 85 | 8.91e-15 | 68.6 |
| Msa0585130 | MtrunA17_Chr1g0212151 | 36.000 | 100 | 57 | 3 | 5 | 98 | 5 | 103 | 9.69e-14 | 67.0 |
| Msa0585130 | MtrunA17_Chr6g0457851 | 37.000 | 100 | 56 | 4 | 5 | 98 | 15 | 113 | 7.15e-13 | 64.7 |
| Msa0585130 | MtrunA17_Chr6g0449861 | 36.000 | 100 | 57 | 3 | 5 | 98 | 13 | 111 | 1.50e-11 | 60.8 |
| Msa0585130 | MtrunA17_Chr6g0449851 | 37.000 | 100 | 56 | 3 | 5 | 98 | 5 | 103 | 2.23e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585130 | AT5G48670.1 | 56.000 | 100 | 44 | 0 | 1 | 100 | 1 | 100 | 4.81e-29 | 108 |
| Msa0585130 | AT3G05860.2 | 39.062 | 128 | 71 | 2 | 1 | 128 | 1 | 121 | 2.66e-28 | 103 |
| Msa0585130 | AT3G05860.3 | 43.243 | 111 | 57 | 1 | 1 | 111 | 1 | 105 | 7.71e-28 | 103 |
| Msa0585130 | AT3G05860.1 | 43.243 | 111 | 57 | 1 | 1 | 111 | 1 | 105 | 1.02e-27 | 103 |
| Msa0585130 | AT5G27960.1 | 43.810 | 105 | 59 | 0 | 4 | 108 | 2 | 106 | 9.15e-26 | 100 |
| Msa0585130 | AT1G65300.1 | 47.917 | 96 | 50 | 0 | 4 | 99 | 3 | 98 | 9.16e-26 | 99.4 |
| Msa0585130 | AT5G26650.1 | 43.810 | 105 | 59 | 0 | 4 | 108 | 2 | 106 | 1.02e-25 | 100 |
| Msa0585130 | AT1G65330.1 | 46.739 | 92 | 49 | 0 | 5 | 96 | 4 | 95 | 4.98e-24 | 94.7 |
| Msa0585130 | AT5G27810.1 | 50.000 | 68 | 34 | 0 | 29 | 96 | 1 | 68 | 5.62e-20 | 80.1 |
| Msa0585130 | AT1G31640.1 | 40.000 | 95 | 56 | 1 | 5 | 99 | 4 | 97 | 7.92e-20 | 85.1 |
| Msa0585130 | AT5G26580.1 | 40.404 | 99 | 45 | 1 | 1 | 99 | 1 | 85 | 1.55e-19 | 83.6 |
| Msa0585130 | AT1G31630.1 | 40.217 | 92 | 54 | 1 | 5 | 96 | 4 | 94 | 2.46e-19 | 82.8 |
| Msa0585130 | AT5G06500.1 | 40.196 | 102 | 61 | 0 | 1 | 102 | 1 | 102 | 2.52e-19 | 81.6 |
| Msa0585130 | AT5G26630.1 | 40.000 | 115 | 69 | 0 | 1 | 115 | 1 | 115 | 2.89e-19 | 80.9 |
| Msa0585130 | AT2G28700.1 | 36.735 | 98 | 62 | 0 | 1 | 98 | 1 | 98 | 5.01e-19 | 82.0 |
| Msa0585130 | AT2G40210.1 | 37.374 | 99 | 62 | 0 | 1 | 99 | 1 | 99 | 3.99e-17 | 77.0 |
| Msa0585130 | AT1G22590.2 | 31.633 | 98 | 67 | 0 | 1 | 98 | 1 | 98 | 2.12e-16 | 72.0 |
| Msa0585130 | AT5G58890.1 | 40.506 | 79 | 40 | 2 | 1 | 72 | 1 | 79 | 1.32e-11 | 61.2 |
| Msa0585130 | AT5G55690.1 | 33.028 | 109 | 60 | 3 | 1 | 102 | 1 | 103 | 2.89e-11 | 60.1 |
| Msa0585130 | AT5G55690.2 | 33.028 | 109 | 60 | 3 | 1 | 102 | 1 | 103 | 2.89e-11 | 60.1 |
Find 42 sgRNAs with CRISPR-Local
Find 63 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGCTTGTGCAGTAGTTTA+TGG | 0.155587 | 4_2:+5646032 | Msa0585130:CDS |
| CACAACAATGACTGGGAAAA+AGG | 0.190222 | 4_2:+5645902 | None:intergenic |
| TTCATTTAAGGTAGTAGATT+TGG | 0.253282 | 4_2:-5646570 | None:intergenic |
| TCATTGTCGATGATGATTCT+AGG | 0.260008 | 4_2:+5645937 | Msa0585130:CDS |
| GGATCTCTGGTTGAGGCTCA+TGG | 0.322708 | 4_2:-5646058 | None:intergenic |
| ATGTTGTCGCCATTATTCAT+AGG | 0.374511 | 4_2:-5646462 | None:intergenic |
| TGTGGTGATGGCCGGATCTC+TGG | 0.406734 | 4_2:-5646071 | None:intergenic |
| GGAAAGCAACATACAATAGA+AGG | 0.409123 | 4_2:+5645958 | Msa0585130:CDS |
| GATCTCTGGTTGAGGCTCAT+GGG | 0.424537 | 4_2:-5646057 | None:intergenic |
| TCAAAATTCAGAACAATGAC+TGG | 0.434871 | 4_2:+5646113 | Msa0585130:CDS |
| AGGATGGGTTCTGGCAATGC+TGG | 0.443129 | 4_2:+5646435 | Msa0585130:intron |
| TAAATGGCAAGGATGGGTTC+TGG | 0.450639 | 4_2:+5646426 | Msa0585130:intron |
| GGAGATGAGTCGGTGCCCTT+TGG | 0.451552 | 4_2:+5646525 | Msa0585130:CDS |
| ATGAGCCTCAACCAGAGATC+CGG | 0.456813 | 4_2:+5646060 | Msa0585130:CDS |
| AAGAGACTTACATGAAAGAA+AGG | 0.463147 | 4_2:+5646165 | Msa0585130:CDS |
| GCTGGAATGCCTATGAATAA+TGG | 0.487571 | 4_2:+5646453 | Msa0585130:CDS |
| AGAGATCCGGCCATCACCAC+AGG | 0.494291 | 4_2:+5646073 | Msa0585130:CDS |
| AGTAGATTTGGCAAAACTCT+AGG | 0.518146 | 4_2:-5646558 | None:intergenic |
| GAACTCCCTGTGGTGATGGC+CGG | 0.518923 | 4_2:-5646079 | None:intergenic |
| ATCACCACAGGGAGTTCAAA+CGG | 0.524260 | 4_2:+5646085 | Msa0585130:CDS |
| CTAGGATCGACCTCGCCAAA+GGG | 0.529567 | 4_2:-5646540 | None:intergenic |
| ATCTCTGGTTGAGGCTCATG+GGG | 0.542152 | 4_2:-5646056 | None:intergenic |
| AGAATCATCATCGACAATGA+AGG | 0.542377 | 4_2:-5645934 | None:intergenic |
| GTTTGAACTCCCTGTGGTGA+TGG | 0.554673 | 4_2:-5646083 | None:intergenic |
| ATTCAGAACAATGACTGGGC+GGG | 0.563336 | 4_2:+5646118 | Msa0585130:CDS |
| AACATACAATAGAAGGCGGA+AGG | 0.566279 | 4_2:+5645965 | Msa0585130:CDS |
| TCTAGGATCGACCTCGCCAA+AGG | 0.568977 | 4_2:-5646541 | None:intergenic |
| AGAGACTTACATGAAAGAAA+GGG | 0.577279 | 4_2:+5646166 | Msa0585130:CDS |
| TATGAACTAAGCACTTTGTG+TGG | 0.579542 | 4_2:+5646005 | Msa0585130:CDS |
| GATGGCCGGATCTCTGGTTG+AGG | 0.581738 | 4_2:-5646065 | None:intergenic |
| GCGGAAGGGTCTAATGAAGA+AGG | 0.591410 | 4_2:+5645980 | Msa0585130:CDS |
| CAAAATTCAGAACAATGACT+GGG | 0.592691 | 4_2:+5646114 | Msa0585130:CDS |
| GGCTTGATGATGAATAGTAA+TGG | 0.609105 | 4_2:+5646504 | Msa0585130:CDS |
| TGAGTCGGTGCCCTTTGGCG+AGG | 0.619442 | 4_2:+5646530 | Msa0585130:CDS |
| GCGGGAGAAGAGCAACAAAA+CGG | 0.630975 | 4_2:+5646136 | Msa0585130:CDS |
| GAATAGTAATGGAGATGAGT+CGG | 0.650993 | 4_2:+5646515 | Msa0585130:CDS |
| AAACTGAAGATACAAAGGCA+TGG | 0.659981 | 4_2:+5646195 | Msa0585130:CDS |
| ACATACAATAGAAGGCGGAA+GGG | 0.677825 | 4_2:+5645966 | Msa0585130:CDS |
| GAGATCCGGCCATCACCACA+GGG | 0.683037 | 4_2:+5646074 | Msa0585130:CDS |
| AATTCAGAACAATGACTGGG+CGG | 0.687254 | 4_2:+5646117 | Msa0585130:CDS |
| AAGCAACATACAATAGAAGG+CGG | 0.694844 | 4_2:+5645961 | Msa0585130:CDS |
| AGCACCGTTTGAACTCCCTG+TGG | 0.787870 | 4_2:-5646089 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTCAAAACATCTTTGT+TGG | + | chr4_2:5646298-5646317 | Msa0585130:intron | 20.0% |
| !! | TATTCATTACTGAATGTAAA+TGG | - | chr4_2:5646408-5646427 | None:intergenic | 20.0% |
| !! | TACATTCAGTAATGAATAAA+TGG | + | chr4_2:5646410-5646429 | Msa0585130:intron | 20.0% |
| !!! | ATTGAAAGTCAATCTTTTAT+GGG | + | chr4_2:5646483-5646502 | Msa0585130:CDS | 20.0% |
| ! | TCTAAAAACTGAAGATACAA+AGG | + | chr4_2:5646190-5646209 | Msa0585130:CDS | 25.0% |
| ! | TATGCAGAATAATATGTCAT+TGG | + | chr4_2:5646275-5646294 | Msa0585130:intron | 25.0% |
| !! | CATTGAAAGTCAATCTTTTA+TGG | + | chr4_2:5646482-5646501 | Msa0585130:CDS | 25.0% |
| TCAAAATTCAGAACAATGAC+TGG | + | chr4_2:5646113-5646132 | Msa0585130:CDS | 30.0% | |
| CAAAATTCAGAACAATGACT+GGG | + | chr4_2:5646114-5646133 | Msa0585130:CDS | 30.0% | |
| AAGAGACTTACATGAAAGAA+AGG | + | chr4_2:5646165-5646184 | Msa0585130:CDS | 30.0% | |
| AGAGACTTACATGAAAGAAA+GGG | + | chr4_2:5646166-5646185 | Msa0585130:CDS | 30.0% | |
| TCATTACTGAATGTAAATGG+TGG | - | chr4_2:5646405-5646424 | None:intergenic | 30.0% | |
| TCAGTAATGAATAAATGGCA+AGG | + | chr4_2:5646415-5646434 | Msa0585130:intron | 30.0% | |
| TAATGAATAAATGGCAAGGA+TGG | + | chr4_2:5646419-5646438 | Msa0585130:intron | 30.0% | |
| AATGAATAAATGGCAAGGAT+GGG | + | chr4_2:5646420-5646439 | Msa0585130:intron | 30.0% | |
| AGAATCATCATCGACAATGA+AGG | - | chr4_2:5645937-5645956 | None:intergenic | 35.0% | |
| TCATTGTCGATGATGATTCT+AGG | + | chr4_2:5645937-5645956 | Msa0585130:CDS | 35.0% | |
| GGAAAGCAACATACAATAGA+AGG | + | chr4_2:5645958-5645977 | Msa0585130:CDS | 35.0% | |
| AAGCAACATACAATAGAAGG+CGG | + | chr4_2:5645961-5645980 | Msa0585130:CDS | 35.0% | |
| TATGAACTAAGCACTTTGTG+TGG | + | chr4_2:5646005-5646024 | Msa0585130:CDS | 35.0% | |
| AAACTGAAGATACAAAGGCA+TGG | + | chr4_2:5646195-5646214 | Msa0585130:CDS | 35.0% | |
| ! | GATACAAAGGCATGGTAATA+AGG | + | chr4_2:5646203-5646222 | Msa0585130:intron | 35.0% |
| GTTGATTGACCACAAATTGA+AGG | + | chr4_2:5646320-5646339 | Msa0585130:intron | 35.0% | |
| TTACTGAATGTAAATGGTGG+TGG | - | chr4_2:5646402-5646421 | None:intergenic | 35.0% | |
| ATGTTGTCGCCATTATTCAT+AGG | - | chr4_2:5646465-5646484 | None:intergenic | 35.0% | |
| !! | GGCTTGATGATGAATAGTAA+TGG | + | chr4_2:5646504-5646523 | Msa0585130:CDS | 35.0% |
| ! | GAATAGTAATGGAGATGAGT+CGG | + | chr4_2:5646515-5646534 | Msa0585130:CDS | 35.0% |
| AGTAGATTTGGCAAAACTCT+AGG | - | chr4_2:5646561-5646580 | None:intergenic | 35.0% | |
| AACATACAATAGAAGGCGGA+AGG | + | chr4_2:5645965-5645984 | Msa0585130:CDS | 40.0% | |
| ACATACAATAGAAGGCGGAA+GGG | + | chr4_2:5645966-5645985 | Msa0585130:CDS | 40.0% | |
| GAAGCTTGTGCAGTAGTTTA+TGG | + | chr4_2:5646032-5646051 | Msa0585130:CDS | 40.0% | |
| AATTCAGAACAATGACTGGG+CGG | + | chr4_2:5646117-5646136 | Msa0585130:CDS | 40.0% | |
| AAGGCATGGTAATAAGGAGA+AGG | + | chr4_2:5646209-5646228 | Msa0585130:intron | 40.0% | |
| GATTGACCACAAATTGAAGG+AGG | + | chr4_2:5646323-5646342 | Msa0585130:intron | 40.0% | |
| TACCAACCTCCTTCAATTTG+TGG | - | chr4_2:5646332-5646351 | None:intergenic | 40.0% | |
| !! | AATTGAAGGAGGTTGGTAGA+AGG | + | chr4_2:5646334-5646353 | Msa0585130:intron | 40.0% |
| TTGGAAGCAGAGGATAATAG+TGG | + | chr4_2:5646357-5646376 | Msa0585130:intron | 40.0% | |
| !! | ATGTAAATGGTGGTGGCATT+TGG | - | chr4_2:5646395-5646414 | None:intergenic | 40.0% |
| GCTGGAATGCCTATGAATAA+TGG | + | chr4_2:5646453-5646472 | Msa0585130:CDS | 40.0% | |
| ATCACCACAGGGAGTTCAAA+CGG | + | chr4_2:5646085-5646104 | Msa0585130:CDS | 45.0% | |
| ATTCAGAACAATGACTGGGC+GGG | + | chr4_2:5646118-5646137 | Msa0585130:CDS | 45.0% | |
| GACCACAAATTGAAGGAGGT+TGG | + | chr4_2:5646327-5646346 | Msa0585130:intron | 45.0% | |
| ! | TAAATGGCAAGGATGGGTTC+TGG | + | chr4_2:5646426-5646445 | Msa0585130:intron | 45.0% |
| GCGGAAGGGTCTAATGAAGA+AGG | + | chr4_2:5645980-5645999 | Msa0585130:CDS | 50.0% | |
| ATCTCTGGTTGAGGCTCATG+GGG | - | chr4_2:5646059-5646078 | None:intergenic | 50.0% | |
| GATCTCTGGTTGAGGCTCAT+GGG | - | chr4_2:5646060-5646079 | None:intergenic | 50.0% | |
| ATGAGCCTCAACCAGAGATC+CGG | + | chr4_2:5646060-5646079 | Msa0585130:CDS | 50.0% | |
| GTTTGAACTCCCTGTGGTGA+TGG | - | chr4_2:5646086-5646105 | None:intergenic | 50.0% | |
| GCGGGAGAAGAGCAACAAAA+CGG | + | chr4_2:5646136-5646155 | Msa0585130:CDS | 50.0% | |
| !! | GAAGGAGGTTGGTAGAAGGT+TGG | + | chr4_2:5646338-5646357 | Msa0585130:intron | 50.0% |
| TGGTAGAAGGTTGGAAGCAG+AGG | + | chr4_2:5646347-5646366 | Msa0585130:intron | 50.0% | |
| GGATCTCTGGTTGAGGCTCA+TGG | - | chr4_2:5646061-5646080 | None:intergenic | 55.0% | |
| AGCACCGTTTGAACTCCCTG+TGG | - | chr4_2:5646092-5646111 | None:intergenic | 55.0% | |
| ! | AGGATGGGTTCTGGCAATGC+TGG | + | chr4_2:5646435-5646454 | Msa0585130:intron | 55.0% |
| CTAGGATCGACCTCGCCAAA+GGG | - | chr4_2:5646543-5646562 | None:intergenic | 55.0% | |
| ! | TCTAGGATCGACCTCGCCAA+AGG | - | chr4_2:5646544-5646563 | None:intergenic | 55.0% |
| GATGGCCGGATCTCTGGTTG+AGG | - | chr4_2:5646068-5646087 | None:intergenic | 60.0% | |
| !! | TGTGGTGATGGCCGGATCTC+TGG | - | chr4_2:5646074-5646093 | None:intergenic | 60.0% |
| AGAGATCCGGCCATCACCAC+AGG | + | chr4_2:5646073-5646092 | Msa0585130:CDS | 60.0% | |
| GAGATCCGGCCATCACCACA+GGG | + | chr4_2:5646074-5646093 | Msa0585130:CDS | 60.0% | |
| !! | GAACTCCCTGTGGTGATGGC+CGG | - | chr4_2:5646082-5646101 | None:intergenic | 60.0% |
| ! | GGAGATGAGTCGGTGCCCTT+TGG | + | chr4_2:5646525-5646544 | Msa0585130:CDS | 60.0% |
| ! | TGAGTCGGTGCCCTTTGGCG+AGG | + | chr4_2:5646530-5646549 | Msa0585130:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 5645909 | 5646587 | 5645909 | ID=Msa0585130;Name=Msa0585130 |
| chr4_2 | mRNA | 5645909 | 5646587 | 5645909 | ID=Msa0585130-mRNA-1;Parent=Msa0585130;Name=Msa0585130-mRNA-1;_AED=0.19;_eAED=0.21;_QI=0|0|0|1|1|1|2|0|152 |
| chr4_2 | exon | 5645909 | 5646216 | 5645909 | ID=Msa0585130-mRNA-1:exon:1355;Parent=Msa0585130-mRNA-1 |
| chr4_2 | exon | 5646437 | 5646587 | 5646437 | ID=Msa0585130-mRNA-1:exon:1356;Parent=Msa0585130-mRNA-1 |
| chr4_2 | CDS | 5645909 | 5646216 | 5645909 | ID=Msa0585130-mRNA-1:cds;Parent=Msa0585130-mRNA-1 |
| chr4_2 | CDS | 5646437 | 5646587 | 5646437 | ID=Msa0585130-mRNA-1:cds;Parent=Msa0585130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
