AlfalfaGEDB | Msa0585140

M. sativa cultivar zhongmu-4 / Msa0585140

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0585140	XP_003605474.1	82.645	242	27	1	4	245	3	229	5.70e-133	384

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0585140	sp\|Q9FJK3\|AGL80_ARATH	53.797	158	72	1	4	161	3	159	6.62e-45	155

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0585140	G7JM29	82.645	242	27	1	4	245	3	229	2.72e-133	384

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TFs/TRs:

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Gene ID	Type	Classification
Msa0585140	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0585140	MtrunA17_Chr4g0014031	82.645	242	27	1	4	245	3	229	5.25e-137	384
Msa0585140	MtrunA17_Chr4g0014131	80.165	242	35	1	4	245	3	231	2.51e-131	370
Msa0585140	MtrunA17_Chr8g0351751	60.956	251	83	5	4	245	3	247	1.41e-97	285
Msa0585140	MtrunA17_Chr4g0014321	57.959	245	89	4	1	245	1	231	3.84e-94	276
Msa0585140	MtrunA17_Chr4g0014121	81.818	154	28	0	4	157	31	184	4.30e-82	243
Msa0585140	MtrunA17_Chr4g0013041	58.216	213	59	3	6	218	5	187	1.76e-81	243
Msa0585140	MtrunA17_Chr3g0110131	48.133	241	118	3	4	242	3	238	6.62e-63	197
Msa0585140	MtrunA17_Chr3g0107381	54.902	153	68	1	4	156	3	154	7.26e-59	186
Msa0585140	MtrunA17_Chr2g0296831	73.333	120	32	0	4	123	3	122	1.17e-50	161
Msa0585140	MtrunA17_Chr3g0107331	44.720	161	88	1	4	164	2	161	1.70e-44	147

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0585140	AT5G48670.1	53.797	158	72	1	4	161	3	159	6.73e-46	155
Msa0585140	AT1G65300.1	45.098	153	83	1	4	156	2	153	5.78e-41	142
Msa0585140	AT1G65330.1	40.541	185	96	2	4	188	2	172	3.58e-39	137
Msa0585140	AT5G26630.1	47.500	160	83	1	4	163	3	161	1.72e-37	131
Msa0585140	AT5G26650.1	40.854	164	96	1	6	169	3	165	4.39e-37	134
Msa0585140	AT5G27960.1	40.244	164	97	1	6	169	3	165	2.48e-36	131
Msa0585140	AT1G31630.1	37.975	158	96	2	4	161	2	157	5.17e-34	125
Msa0585140	AT1G31640.1	39.073	151	90	2	4	154	2	150	7.85e-32	121
Msa0585140	AT5G27810.1	54.839	93	42	0	30	122	1	93	1.30e-30	110
Msa0585140	AT3G05860.2	39.189	148	89	1	4	151	3	149	4.82e-30	111

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Find 61 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAGTCCAACTCGAAA+TGG	0.452175	4_2:+5660342	Msa0585140:CDS
AAAGGCCAAATCTCAGGTTG+AGG	0.605277	4_2:-5659992	None:intergenic
AACCATGGGTAGAAGAAGTA+AGG	0.501192	4_2:+5659829	None:intergenic
AACCTTACTTCTTCTACCCA+TGG	0.464315	4_2:-5659831	None:intergenic
AACGAAGGGTCTATTGAAAA+AGG	0.335070	4_2:+5659907	Msa0585140:CDS
AAGAGACTTTCTTGACACAA+AGG	0.620991	4_2:+5660092	Msa0585140:CDS
ACAGGCTTCAATGCCACAGA+GGG	0.601811	4_2:-5659945	None:intergenic
AGAAACAAAGAAAAGAAAAT+AGG	0.231520	4_2:+5660140	Msa0585140:CDS
AGAGACAGTGCCATTTCGTG+AGG	0.652584	4_2:+5660513	Msa0585140:CDS
AGAGACTTTCTTGACACAAA+GGG	0.533444	4_2:+5660093	Msa0585140:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCATACAAGAAAAGAACGA+AGG	+	chr4_2:5659892-5659911	Msa0585140:CDS	30.0%
TCATACAAGAAAAGAACGAA+GGG	+	chr4_2:5659893-5659912	Msa0585140:CDS	30.0%
ATGAGTCAATGTCTTAATGA+AGG	+	chr4_2:5660184-5660203	Msa0585140:CDS	30.0%
TACTAACATCCTTCAAATTG+TGG	-	chr4_2:5660270-5660289	None:intergenic	30.0%
AGTGAAGAAATGGCAATTAT+GGG	+	chr4_2:5660403-5660422	Msa0585140:CDS	30.0%
TGCAACATCATTGACAATGA+AGG	-	chr4_2:5659864-5659883	None:intergenic	35.0%
TCATTGTCAATGATGTTGCA+AGG	+	chr4_2:5659864-5659883	Msa0585140:CDS	35.0%
AACGAAGGGTCTATTGAAAA+AGG	+	chr4_2:5659907-5659926	Msa0585140:CDS	35.0%
TTTGTGTCAAGAAAGTCTCT+TGG	-	chr4_2:5660093-5660112	None:intergenic	35.0%
AAGAGACTTTCTTGACACAA+AGG	+	chr4_2:5660092-5660111	Msa0585140:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	5659833	5660570	5659833	ID=Msa0585140;Name=Msa0585140
chr4_2	mRNA	5659833	5660570	5659833	ID=Msa0585140-mRNA-1;Parent=Msa0585140;Name=Msa0585140-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|245
chr4_2	exon	5659833	5660570	5659833	ID=Msa0585140-mRNA-1:exon:1353;Parent=Msa0585140-mRNA-1
chr4_2	CDS	5659833	5660570	5659833	ID=Msa0585140-mRNA-1:cds;Parent=Msa0585140-mRNA-1

Gene Sequence

>Msa0585140

ATGGGTAGAAGAAGTAAGGTTAAACTTGCCTTCATTGTCAATGATGTTGCAAGGAAAGCATCATACAAGAAAAGAACGAAGGGTCTATTGAAAAAGGTTGCTGAACTTAGCACCCTCTGTGGCATTGAAGCCTGTGCCATAGTGTATGGACCTTATGAGCCTCAACCTGAGATTTGGCCTTTACCTGAGGGGGTCCAATCTGTGCTCTCAAAATTCATGACGATGCACGAGTTTCAAAAGTGCAAGAAAATGATGAACCAAGAGACTTTCTTGACACAAAGGGTCCTGAAGGCTGAAGAGAAATTGAAGAAACAAAGAAAAGAAAATAGGGAGCAAGAGATGACAATACTCATGAGTCAATGTCTTAATGAAGGTAAAGTTGTGCATGACAATATGTCAACAATGGATATGAGTTATCTTGCTTGGTTGATTGACCACAATTTGAAGGATGTTAGTAGACGTTTGGAAGCATGGGATAACAATGATCAAAATCAAATCATGGCTATTCAAAACCAAGTCCAACTCGAAATGGCAACAACAATACCACCATCACTTCTAGCAGCATCTAGGAGTGAAGAAATGGCAATTATGGGTCACGGCCATGTTGGGGTACCTATTAATGATGATGACATTATGCAAAGTCAATTATTGATGGACTCAATGGTGGCTGGTAATGTGCAAGAGACAGTGCCATTTCGTGAGGTCAATTCTGGAGTTTGGTCTGATTTACTACCTTGA

Protein sequence

>Msa0585140

MGRRSKVKLAFIVNDVARKASYKKRTKGLLKKVAELSTLCGIEACAIVYGPYEPQPEIWPLPEGVQSVLSKFMTMHEFQKCKKMMNQETFLTQRVLKAEEKLKKQRKENREQEMTILMSQCLNEGKVVHDNMSTMDMSYLAWLIDHNLKDVSRRLEAWDNNDQNQIMAIQNQVQLEMATTIPPSLLAASRSEEMAIMGHGHVGVPINDDDIMQSQLLMDSMVAGNVQETVPFREVNSGVWSDLLP*