AlfalfaGEDB | Msa0585160

M. sativa cultivar zhongmu-4 / Msa0585160

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0585160	XP_003605474.1	72.650	234	47	2	1	222	1	229	4.05e-109	323

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0585160	sp\|Q9FJK3\|AGL80_ARATH	54.545	154	69	1	1	154	1	153	2.63e-45	156

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0585160	G7JM29	72.650	234	47	2	1	222	1	229	1.93e-109	323

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0585160	TF	MADS-M-type

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0585160	MtrunA17_Chr4g0014031	72.650	234	47	2	1	222	1	229	3.72e-113	323
Msa0585160	MtrunA17_Chr4g0014131	70.492	244	37	2	1	222	1	231	3.91e-110	315
Msa0585160	MtrunA17_Chr4g0014321	58.874	231	86	1	1	222	1	231	9.29e-97	281
Msa0585160	MtrunA17_Chr8g0351751	59.109	247	76	4	1	222	1	247	1.16e-91	269
Msa0585160	MtrunA17_Chr4g0013041	63.077	195	64	2	1	195	1	187	2.75e-87	256
Msa0585160	MtrunA17_Chr4g0014121	80.892	157	30	0	1	157	29	185	9.62e-83	244
Msa0585160	MtrunA17_Chr3g0110131	48.963	241	98	4	1	219	1	238	1.00e-64	200
Msa0585160	MtrunA17_Chr3g0107381	46.018	226	108	3	1	222	1	216	4.77e-63	195
Msa0585160	MtrunA17_Chr2g0296831	72.951	122	33	0	1	122	1	122	1.21e-51	163
Msa0585160	MtrunA17_Chr3g0107331	47.020	151	79	1	3	153	2	151	1.71e-44	146

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0585160	AT5G48670.1	54.545	154	69	1	1	154	1	153	2.68e-46	156
Msa0585160	AT1G65300.1	42.857	168	86	2	3	161	2	168	1.83e-41	142
Msa0585160	AT5G26630.1	42.927	205	106	2	1	195	1	204	4.14e-41	139
Msa0585160	AT1G65330.1	43.452	168	87	2	3	163	2	168	3.57e-40	139
Msa0585160	AT5G26650.1	43.421	152	85	1	5	156	3	153	8.43e-37	132
Msa0585160	AT5G27960.1	42.262	168	85	5	5	161	3	169	4.22e-36	129
Msa0585160	AT1G31630.1	37.500	168	96	3	3	163	2	167	1.10e-35	129
Msa0585160	AT1G31640.1	39.073	151	90	2	3	153	2	150	3.17e-32	122
Msa0585160	AT2G28700.1	36.723	177	107	2	1	175	1	174	1.43e-31	118
Msa0585160	AT5G27810.1	55.914	93	41	0	29	121	1	93	1.67e-31	112

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Find 61 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCATCACCATTAAT+AGG	0.355958	4_2:-5687424	None:intergenic
AAGAAAGGGTCTATTGAAAA+AGG	0.312767	4_2:+5686952	Msa0585160:CDS
AAGAGACTTTCTTGACACAA+AGG	0.607804	4_2:+5687137	Msa0585160:CDS
ACAGGCTTCAATGCCACAGA+GGG	0.601811	4_2:-5686990	None:intergenic
AGAAACAAAGAAAAGAAAAT+AGG	0.231520	4_2:+5687185	Msa0585160:CDS
AGAGACTTTCTTGACACAAA+GGG	0.517022	4_2:+5687138	Msa0585160:CDS
AGAGATTTGGCCTTCACCAG+AGG	0.617598	4_2:+5687045	Msa0585160:CDS
AGATTTGGCCTTCACCAGAG+GGG	0.703414	4_2:+5687047	Msa0585160:CDS
AGCATCTAGGAGCGAAGAAA+TGG	0.428793	4_2:+5687372	Msa0585160:CDS
AGCGAAGAAATGGCAATTAT+GGG	0.425600	4_2:+5687382	Msa0585160:CDS

Showing 1 to 10 of 61 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAGGGTCTATTGAAAA+AGG	+	chr4_2:5686952-5686971	Msa0585160:CDS	30.0%
GTTGATTGACCATAATTTGA+AGG	+	chr4_2:5687303-5687322	Msa0585160:CDS	30.0%
TACCAATGTCCTTCAAATTA+TGG	-	chr4_2:5687315-5687334	None:intergenic	30.0%
CTTGTATGATTCTTTCCTTG+CGG	-	chr4_2:5686927-5686946	None:intergenic	35.0%
TTTGTGTCAAGAAAGTCTCT+TGG	-	chr4_2:5687138-5687157	None:intergenic	35.0%
AAGAGACTTTCTTGACACAA+AGG	+	chr4_2:5687137-5687156	Msa0585160:CDS	35.0%
AGAGACTTTCTTGACACAAA+GGG	+	chr4_2:5687138-5687157	Msa0585160:CDS	35.0%
ATGTCTCATTGTCTCAATGA+AGG	+	chr4_2:5687229-5687248	Msa0585160:CDS	35.0%
GACCATAATTTGAAGGACAT+TGG	+	chr4_2:5687310-5687329	Msa0585160:CDS	35.0%
AGCGAAGAAATGGCAATTAT+GGG	+	chr4_2:5687382-5687401	Msa0585160:CDS	35.0%

Showing 1 to 10 of 60 entries

Previous1 2 3 4 5 6Next

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	5686881	5687549	5686881	ID=Msa0585160;Name=Msa0585160
chr4_2	mRNA	5686881	5687549	5686881	ID=Msa0585160-mRNA-1;Parent=Msa0585160;Name=Msa0585160-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|222
chr4_2	exon	5686881	5687549	5686881	ID=Msa0585160-mRNA-1:exon:1354;Parent=Msa0585160-mRNA-1
chr4_2	CDS	5686881	5687549	5686881	ID=Msa0585160-mRNA-1:cds;Parent=Msa0585160-mRNA-1

Gene Sequence

>Msa0585160

ATGGCTAGAAGTAAGGTTAAACTTGCCTTCATTGTCAATGATGCCGCAAGGAAAGAATCATACAAGAAAAGAAGAAAGGGTCTATTGAAAAAGGTTGCTGAACTTAGCACCCTCTGTGGCATTGAAGCCTGTGCCATAGTGTATGGCCCTTATGAGCCTCAGCCAGAGATTTGGCCTTCACCAGAGGGGGTCCAATCCGTGCTCTCAAAATTCATGACGATGCACGAGTTTCAAAAGTGCAAGAAAATGATGAACCAAGAGACTTTCTTGACACAAAGGGTTCTGAAGGCTGAAGAGAAATTGAAGAAACAAAGAAAAGAAAATAGGGAGCAAGAGATGACAATACTCATGTCTCATTGTCTCAATGAAGGTAGAGTTGTGCACGACAATATGTCAATGGTTGATTTGAGTTATCTTACTTGGTTGATTGACCATAATTTGAAGGACATTGGTAGACGTTTGGCGGCAACAGTGCCACTACCACCTCCAGCAGCATCTAGGAGCGAAGAAATGGCAATTATGGGTCATGGACATGTTGGGATACCTATTAATGGTGATGACATTTTGCAAAGTCAATTATTGATGGACTCAATGGTGGCTGGTAATGTGCAAGAGACAGTGCCCTTTGGTGAGATCAATTATGGAGTTTGCCCTAATTTACTACCTTGA

Protein sequence

>Msa0585160

MARSKVKLAFIVNDAARKESYKKRRKGLLKKVAELSTLCGIEACAIVYGPYEPQPEIWPSPEGVQSVLSKFMTMHEFQKCKKMMNQETFLTQRVLKAEEKLKKQRKENREQEMTILMSHCLNEGRVVHDNMSMVDLSYLTWLIDHNLKDIGRRLAATVPLPPPAASRSEEMAIMGHGHVGIPINGDDILQSQLLMDSMVAGNVQETVPFGEINYGVCPNLLP*