AlfalfaGEDB | Msa0586010

M. sativa cultivar zhongmu-4 / Msa0586010

KEGG: K21994
GO: GO:0005575 GO:0016020
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586010	XP_003617566.1	68.800	125	37	1	1	125	1	123	5.09e-54	177

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586010	sp\|P59467\|LBD23_ARATH	53.043	115	50	2	5	117	5	117	9.93e-38	128

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586010	G7K3J3	68.800	125	37	1	1	125	1	123	2.43e-54	177

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TFs/TRs:

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Gene ID	Type	Classification
Msa0586010	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586010	MtrunA17_Chr5g0444351	68.800	125	37	1	1	125	1	123	4.68e-58	177
Msa0586010	MtrunA17_Chr7g0225111	64.407	118	40	1	1	118	1	116	2.44e-54	167
Msa0586010	MtrunA17_Chr2g0311601	42.735	117	60	2	6	122	14	123	3.12e-32	112
Msa0586010	MtrunA17_Chr4g0043421	41.880	117	61	2	6	122	16	125	1.40e-30	108
Msa0586010	MtrunA17_Chr5g0437571	57.143	77	33	0	6	82	7	83	2.90e-30	107
Msa0586010	MtrunA17_Chr3g0106101	41.880	117	61	2	6	122	8	117	2.95e-30	107
Msa0586010	MtrunA17_Chr3g0114061	42.276	123	70	1	6	127	9	131	3.65e-30	107
Msa0586010	MtrunA17_Chr3g0115431	50.588	85	42	0	6	90	10	94	1.13e-28	105
Msa0586010	MtrunA17_Chr7g0227511	57.143	77	33	0	6	82	12	88	1.27e-28	103
Msa0586010	MtrunA17_Chr6g0449651	54.545	77	35	0	6	82	68	144	3.47e-28	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586010	AT3G26620.1	53.043	115	50	2	5	117	5	117	1.01e-38	128
Msa0586010	AT3G26660.1	53.509	114	49	2	5	116	5	116	1.21e-38	127
Msa0586010	AT1G31320.1	59.740	77	31	0	6	82	14	90	2.05e-31	110
Msa0586010	AT2G30130.1	57.143	77	33	0	6	82	9	85	3.27e-30	108
Msa0586010	AT3G27650.1	55.844	77	34	0	6	82	40	116	3.32e-29	105
Msa0586010	AT2G23660.2	53.846	78	36	0	6	83	6	83	9.21e-28	105
Msa0586010	AT2G23660.3	53.846	78	36	0	6	83	6	83	9.21e-28	105
Msa0586010	AT2G23660.1	53.846	78	36	0	6	83	6	83	9.21e-28	105
Msa0586010	AT5G66870.1	52.564	78	37	0	6	83	8	85	2.78e-27	103
Msa0586010	AT1G65620.1	52.564	78	37	0	6	83	10	87	6.89e-27	100

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Find 33 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAATTAGGAGTTTGATT+AGG	0.441199	4_2:-7113572	None:intergenic
AATCCAGTTTATGGATGTGT+TGG	0.478419	4_2:+7113387	Msa0586010:CDS
AATCTTTGAGGATTATTGGC+AGG	0.458959	4_2:-7113114	None:intergenic
ACTCCTAATTGGTTTAATTA+AGG	0.204559	4_2:+7113581	Msa0586010:CDS
AGCAAATCTTTGAGGATTAT+TGG	0.230583	4_2:-7113118	None:intergenic
AGCAATCTGAGTCTGAATTT+TGG	0.276155	4_2:-7113459	None:intergenic
AGGATTCAAAATCCAGTTTA+TGG	0.187774	4_2:+7113378	Msa0586010:CDS
AGTCCTTAATTAAACCAATT+AGG	0.327340	4_2:-7113584	None:intergenic
ATCCAGTTTATGGATGTGTT+GGG	0.435692	4_2:+7113388	Msa0586010:CDS
ATCCCAACACATCCATAAAC+TGG	0.380377	4_2:-7113390	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGATTCAAAATCCAGTTTA+TGG	+	chr4_2:7113378-7113397	Msa0586010:CDS	30.0%
CAAAATCAACAATATGAAGC+TGG	+	chr4_2:7113494-7113513	Msa0586010:CDS	30.0%
AACCAATTAGGAGTTTGATT+AGG	-	chr4_2:7113575-7113594	None:intergenic	30.0%
GAGAGAAAATGCAATCAGAA+GGG	-	chr4_2:7113086-7113105	None:intergenic	35.0%
GGATTATTGGCAGGAAAATA+TGG	-	chr4_2:7113108-7113127	None:intergenic	35.0%
CAATGTTGGAAAAATGCTTC+AGG	+	chr4_2:7113167-7113186	Msa0586010:CDS	35.0%
AATCCAGTTTATGGATGTGT+TGG	+	chr4_2:7113387-7113406	Msa0586010:CDS	35.0%
ATCCAGTTTATGGATGTGTT+GGG	+	chr4_2:7113388-7113407	Msa0586010:CDS	35.0%
CTTGCAAGAGTCAAAGAAGA+AGG	+	chr4_2:7113058-7113077	Msa0586010:CDS	40.0%
GGAGAGAAAATGCAATCAGA+AGG	-	chr4_2:7113087-7113106	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	7113036	7113620	7113036	ID=Msa0586010;Name=Msa0586010
chr4_2	mRNA	7113036	7113620	7113036	ID=Msa0586010-mRNA-1;Parent=Msa0586010;Name=Msa0586010-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0\|0\|1\|1\|1\|2\|0\|151
chr4_2	exon	7113036	7113188	7113036	ID=Msa0586010-mRNA-1:exon:1789;Parent=Msa0586010-mRNA-1
chr4_2	exon	7113318	7113620	7113318	ID=Msa0586010-mRNA-1:exon:1790;Parent=Msa0586010-mRNA-1
chr4_2	CDS	7113036	7113188	7113036	ID=Msa0586010-mRNA-1:cds;Parent=Msa0586010-mRNA-1
chr4_2	CDS	7113318	7113620	7113318	ID=Msa0586010-mRNA-1:cds;Parent=Msa0586010-mRNA-1

Gene Sequence

>Msa0586010

ATGATTTATGGTAGGTGTGCTGCTTGCAAGAGTCAAAGAAGAAGGTGCCCTTCTGATTGCATTTTCTCTCCATATTTTCCTGCCAATAATCCTCAAAGATTTGCTTCTGTCCACCGAATCTATGGTGGTGCCAATGTTGGAAAAATGCTTCAGCAATTACCTCACTATGCAAGAGAACAAGCTGCAAATACTTTGTATTTAGAAGCACAATGTAGGATTCAAAATCCAGTTTATGGATGTGTTGGGATTACTCTAAATTGTATCAACAAATCCATGATACAGAAGCTGAGCTGGCCAAAATTCAGACTCAGATTGCTTGTCATAAGCTCCAAAATCAACAATATGAAGCTGGATCAAACTTCAACCTTTTGCCTCCACAAAGTAGCAGCATGGAGCAGTTTCAATGGCCTAATCAAACTCCTAATTGGTTTAATTAAGGACTTGTTTTCCAATTGA

Protein sequence

>Msa0586010

MIYGRCAACKSQRRRCPSDCIFSPYFPANNPQRFASVHRIYGGANVGKMLQQLPHYAREQAANTLYLEAQCRIQNPVYGCVGITLNCINKSMIQKLSWPKFRLRLLVISSKINNMKLDQTSTFCLHKVAAWSSFNGLIKLLIGLIKDLFSN*