Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586020 | XP_013454526.1 | 95.000 | 380 | 12 | 1 | 1 | 380 | 1 | 373 | 0.0 | 728 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0586020 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586020 | MtrunA17_Chr4g0001831 | 95.000 | 380 | 12 | 1 | 1 | 380 | 1 | 373 | 0.0 | 728 |
| Msa0586020 | MtrunA17_Chr2g0286191 | 36.612 | 366 | 220 | 5 | 14 | 378 | 6 | 360 | 2.01e-66 | 214 |
| Msa0586020 | MtrunA17_Chr4g0067121 | 34.535 | 333 | 210 | 5 | 45 | 375 | 52 | 378 | 6.02e-57 | 191 |
| Msa0586020 | MtrunA17_Chr4g0067671 | 32.344 | 337 | 214 | 5 | 27 | 360 | 30 | 355 | 1.09e-55 | 186 |
| Msa0586020 | MtrunA17_Chr4g0067141 | 32.698 | 367 | 223 | 7 | 22 | 379 | 23 | 374 | 2.31e-52 | 178 |
| Msa0586020 | MtrunA17_Chr2g0296121 | 32.312 | 359 | 229 | 6 | 22 | 375 | 105 | 454 | 1.36e-51 | 179 |
| Msa0586020 | MtrunA17_Chr2g0295761 | 33.237 | 346 | 211 | 6 | 36 | 374 | 54 | 386 | 1.83e-51 | 176 |
| Msa0586020 | MtrunA17_Chr2g0296301 | 29.552 | 335 | 227 | 3 | 43 | 374 | 35 | 363 | 2.05e-51 | 176 |
| Msa0586020 | MtrunA17_Chr2g0295731 | 30.663 | 362 | 241 | 6 | 17 | 375 | 21 | 375 | 4.12e-48 | 167 |
| Msa0586020 | MtrunA17_Chr2g0296151 | 30.541 | 370 | 246 | 6 | 11 | 375 | 5 | 368 | 3.94e-47 | 164 |
| Msa0586020 | MtrunA17_Chr2g0296191 | 31.565 | 377 | 246 | 6 | 1 | 375 | 142 | 508 | 1.28e-46 | 171 |
| Msa0586020 | MtrunA17_Chr2g0296191 | 31.564 | 358 | 235 | 6 | 24 | 374 | 640 | 994 | 1.71e-44 | 164 |
| Msa0586020 | MtrunA17_Chr2g0296111 | 32.578 | 353 | 218 | 9 | 13 | 356 | 9 | 350 | 3.99e-46 | 162 |
| Msa0586020 | MtrunA17_Chr2g0296291 | 29.067 | 375 | 223 | 5 | 39 | 375 | 27 | 396 | 1.37e-45 | 161 |
| Msa0586020 | MtrunA17_Chr2g0295741 | 30.141 | 355 | 236 | 6 | 24 | 375 | 29 | 374 | 5.04e-45 | 159 |
| Msa0586020 | MtrunA17_Chr2g0296171 | 29.288 | 379 | 252 | 8 | 15 | 380 | 23 | 398 | 2.97e-43 | 155 |
| Msa0586020 | MtrunA17_Chr2g0296221 | 30.028 | 363 | 242 | 7 | 22 | 375 | 53 | 412 | 3.74e-43 | 155 |
| Msa0586020 | MtrunA17_Chr2g0296711 | 29.167 | 336 | 232 | 4 | 46 | 378 | 55 | 387 | 5.55e-43 | 155 |
| Msa0586020 | MtrunA17_Chr2g0296251 | 28.496 | 379 | 228 | 6 | 35 | 375 | 23 | 396 | 1.06e-42 | 153 |
| Msa0586020 | MtrunA17_Chr2g0296721 | 29.973 | 367 | 246 | 6 | 15 | 374 | 17 | 379 | 5.45e-42 | 151 |
| Msa0586020 | MtrunA17_Chr2g0296741 | 29.155 | 367 | 250 | 6 | 15 | 374 | 37 | 400 | 1.21e-41 | 151 |
| Msa0586020 | MtrunA17_Chr2g0315731 | 30.245 | 367 | 246 | 6 | 15 | 374 | 37 | 400 | 1.75e-41 | 150 |
| Msa0586020 | MtrunA17_Chr2g0296231 | 30.120 | 332 | 224 | 5 | 46 | 374 | 51 | 377 | 2.22e-41 | 150 |
| Msa0586020 | MtrunA17_Chr2g0296181 | 28.412 | 359 | 220 | 8 | 22 | 375 | 29 | 355 | 3.36e-35 | 133 |
| Msa0586020 | MtrunA17_Chr8g0377801 | 24.927 | 341 | 236 | 3 | 36 | 375 | 64 | 385 | 7.54e-31 | 121 |
| Msa0586020 | MtrunA17_Chr8g0377781 | 27.485 | 342 | 238 | 5 | 44 | 380 | 41 | 377 | 1.47e-29 | 117 |
| Msa0586020 | MtrunA17_Chr2g0286221 | 37.267 | 161 | 99 | 2 | 219 | 379 | 13 | 171 | 3.32e-29 | 111 |
| Msa0586020 | MtrunA17_Chr2g0296131 | 31.169 | 154 | 106 | 0 | 222 | 375 | 7 | 160 | 4.52e-22 | 92.0 |
| Msa0586020 | MtrunA17_Chr2g0296161 | 29.605 | 152 | 107 | 0 | 224 | 375 | 5 | 156 | 5.99e-21 | 89.0 |
| Msa0586020 | MtrunA17_Chr2g0296551 | 30.220 | 182 | 123 | 3 | 195 | 375 | 4 | 182 | 9.37e-20 | 86.7 |
| Msa0586020 | MtrunA17_Chr2g0296211 | 29.612 | 206 | 129 | 4 | 184 | 375 | 153 | 356 | 1.19e-19 | 89.4 |
| Msa0586020 | MtrunA17_Chr2g0295711 | 36.571 | 175 | 104 | 5 | 27 | 198 | 30 | 200 | 1.46e-19 | 86.3 |
| Msa0586020 | MtrunA17_Chr2g0295721 | 35.652 | 115 | 74 | 0 | 221 | 335 | 2 | 116 | 4.84e-16 | 73.9 |
| Msa0586020 | MtrunA17_Chr2g0296561 | 37.209 | 129 | 75 | 2 | 18 | 145 | 15 | 138 | 7.79e-15 | 71.2 |
| Msa0586020 | MtrunA17_Chr2g0296701 | 29.221 | 154 | 107 | 2 | 223 | 375 | 2 | 154 | 4.39e-14 | 70.1 |
| Msa0586020 | MtrunA17_Chr2g0296751 | 28.346 | 127 | 91 | 0 | 249 | 375 | 1 | 127 | 5.56e-13 | 66.6 |
| Msa0586020 | MtrunA17_Chr2g0295751 | 31.915 | 141 | 93 | 2 | 32 | 169 | 35 | 175 | 4.31e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586020 | AT5G07900.1 | 40.588 | 340 | 199 | 3 | 37 | 374 | 61 | 399 | 2.25e-84 | 262 |
| Msa0586020 | AT1G21150.1 | 34.501 | 371 | 236 | 4 | 10 | 374 | 17 | 386 | 3.70e-64 | 210 |
| Msa0586020 | AT1G21150.2 | 34.501 | 371 | 236 | 4 | 10 | 374 | 81 | 450 | 1.74e-63 | 210 |
| Msa0586020 | AT1G21150.3 | 34.857 | 350 | 219 | 4 | 33 | 374 | 2 | 350 | 2.07e-62 | 204 |
| Msa0586020 | AT1G62120.1 | 29.923 | 391 | 227 | 7 | 14 | 360 | 18 | 405 | 5.03e-42 | 152 |
| Msa0586020 | AT1G61970.2 | 28.926 | 363 | 206 | 7 | 41 | 361 | 48 | 400 | 3.60e-40 | 147 |
| Msa0586020 | AT1G61970.7 | 28.926 | 363 | 206 | 7 | 41 | 361 | 48 | 400 | 3.60e-40 | 147 |
| Msa0586020 | AT1G61970.6 | 28.926 | 363 | 206 | 7 | 41 | 361 | 48 | 400 | 3.60e-40 | 147 |
| Msa0586020 | AT1G61970.3 | 28.926 | 363 | 206 | 7 | 41 | 361 | 48 | 400 | 3.60e-40 | 147 |
| Msa0586020 | AT1G61970.5 | 28.926 | 363 | 206 | 7 | 41 | 361 | 48 | 400 | 3.60e-40 | 147 |
| Msa0586020 | AT1G61970.4 | 28.926 | 363 | 206 | 7 | 41 | 361 | 48 | 400 | 3.60e-40 | 147 |
| Msa0586020 | AT1G61970.1 | 28.926 | 363 | 206 | 7 | 41 | 361 | 48 | 400 | 3.60e-40 | 147 |
| Msa0586020 | AT1G61990.2 | 28.312 | 385 | 225 | 6 | 27 | 371 | 32 | 405 | 7.78e-40 | 146 |
| Msa0586020 | AT1G61990.1 | 28.312 | 385 | 225 | 6 | 27 | 371 | 32 | 405 | 7.78e-40 | 146 |
| Msa0586020 | AT1G61980.3 | 28.852 | 357 | 212 | 5 | 41 | 360 | 48 | 399 | 1.40e-38 | 143 |
| Msa0586020 | AT1G61980.2 | 28.852 | 357 | 212 | 5 | 41 | 360 | 48 | 399 | 1.40e-38 | 143 |
| Msa0586020 | AT1G61980.1 | 28.852 | 357 | 212 | 5 | 41 | 360 | 48 | 399 | 1.40e-38 | 143 |
| Msa0586020 | AT3G46950.1 | 31.894 | 301 | 189 | 6 | 14 | 309 | 18 | 307 | 1.16e-36 | 138 |
| Msa0586020 | AT1G62010.1 | 29.282 | 362 | 192 | 9 | 42 | 361 | 45 | 384 | 8.39e-36 | 135 |
| Msa0586020 | AT5G23930.1 | 28.604 | 444 | 223 | 10 | 7 | 370 | 12 | 441 | 1.73e-35 | 135 |
| Msa0586020 | AT1G62085.1 | 32.573 | 307 | 184 | 8 | 14 | 307 | 18 | 314 | 4.01e-33 | 129 |
| Msa0586020 | AT1G62085.2 | 32.573 | 307 | 184 | 8 | 14 | 307 | 18 | 314 | 4.01e-33 | 129 |
| Msa0586020 | AT1G62150.1 | 31.541 | 279 | 176 | 5 | 35 | 307 | 48 | 317 | 2.79e-32 | 127 |
| Msa0586020 | AT1G62110.1 | 31.633 | 294 | 174 | 7 | 27 | 307 | 32 | 311 | 1.43e-31 | 124 |
| Msa0586020 | AT1G61960.1 | 33.212 | 274 | 174 | 6 | 27 | 296 | 32 | 300 | 1.23e-30 | 122 |
| Msa0586020 | AT5G64950.1 | 28.896 | 308 | 208 | 5 | 77 | 375 | 71 | 376 | 2.35e-29 | 117 |
| Msa0586020 | AT1G56380.2 | 23.161 | 367 | 231 | 11 | 39 | 361 | 21 | 380 | 6.15e-19 | 88.2 |
| Msa0586020 | AT1G56380.1 | 23.161 | 367 | 231 | 11 | 39 | 361 | 10 | 369 | 6.97e-19 | 87.8 |
| Msa0586020 | AT1G62490.1 | 27.341 | 267 | 150 | 7 | 30 | 296 | 83 | 305 | 2.79e-15 | 76.6 |
Find 63 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACCTTGTTGAAAGTTTA+AGG | 0.085452 | 4_2:-7116643 | None:intergenic |
| GAAAGATTTGCCATTGTTAT+TGG | 0.156741 | 4_2:+7117549 | Msa0586020:CDS |
| CTTGTCACCAATCAAGATTT+TGG | 0.169173 | 4_2:-7116849 | None:intergenic |
| TAAGTATGGACAAAGAAATT+TGG | 0.197332 | 4_2:+7117197 | Msa0586020:CDS |
| TATGAAAACAATGGACTTCT+TGG | 0.234883 | 4_2:+7117324 | Msa0586020:CDS |
| ATCTTGATAACGGCACATTT+AGG | 0.264755 | 4_2:-7117427 | None:intergenic |
| TTCCTCACTTGTCATAATAA+AGG | 0.304109 | 4_2:-7117494 | None:intergenic |
| AAAGAACAGTAGTTGAATAA+AGG | 0.305931 | 4_2:-7116502 | None:intergenic |
| AATGGCAAATCTTTCTGAAA+TGG | 0.311445 | 4_2:-7117541 | None:intergenic |
| AAAAGCTGAATAACAGCATT+TGG | 0.312391 | 4_2:-7116686 | None:intergenic |
| TCTTGATAACGGCACATTTA+GGG | 0.317154 | 4_2:-7117426 | None:intergenic |
| ATAACAGCATTTGGGCCATT+AGG | 0.321633 | 4_2:-7116677 | None:intergenic |
| ACAGCAGAGAAAAGTGAAAA+AGG | 0.329234 | 4_2:-7116539 | None:intergenic |
| AAGTATGGACAAAGAAATTT+GGG | 0.343578 | 4_2:+7117198 | Msa0586020:CDS |
| GATTTCCCCAAAATCTTGAT+TGG | 0.348520 | 4_2:+7116842 | Msa0586020:CDS |
| TCAAAGTTCTATTTCCAGTT+TGG | 0.350471 | 4_2:+7117051 | Msa0586020:CDS |
| TAACAGCATTTGGGCCATTA+GGG | 0.351944 | 4_2:-7116676 | None:intergenic |
| GGGCATGTAGCAATGTCTTC+TGG | 0.354285 | 4_2:-7117367 | None:intergenic |
| GTTAATTCAGTAAAAGAAAT+GGG | 0.366519 | 4_2:+7117127 | Msa0586020:CDS |
| TCACATACTCAGGATACTTT+AGG | 0.366731 | 4_2:-7117282 | None:intergenic |
| ATGGCAAATCTTTCTGAAAT+GGG | 0.369413 | 4_2:-7117540 | None:intergenic |
| CAACCTTGTTGAAAGTTTAA+GGG | 0.375048 | 4_2:-7116642 | None:intergenic |
| TGTTAATTCAGTAAAAGAAA+TGG | 0.415470 | 4_2:+7117126 | Msa0586020:CDS |
| AAGAACAGTAGTTGAATAAA+GGG | 0.427774 | 4_2:-7116501 | None:intergenic |
| AGGAAAATTCGATACCAAAC+TGG | 0.428069 | 4_2:-7117065 | None:intergenic |
| TCCAACACAAATCAACATAA+AGG | 0.430035 | 4_2:+7116563 | Msa0586020:CDS |
| ACAACCCACATGAGTTTATG+AGG | 0.430149 | 4_2:-7116607 | None:intergenic |
| GATTCGAGTAATTGTAAGTA+TGG | 0.436929 | 4_2:+7117183 | Msa0586020:CDS |
| AAGTGTCTTCTCCAAGTTGC+GGG | 0.439107 | 4_2:-7117401 | None:intergenic |
| CTCAACAAATCTAGAATGCT+TGG | 0.457146 | 4_2:-7117101 | None:intergenic |
| ACCTTTATGTTGATTTGTGT+TGG | 0.460913 | 4_2:-7116564 | None:intergenic |
| AAGTTGCGGGTCAGAATCCC+AGG | 0.461038 | 4_2:-7117388 | None:intergenic |
| TGACTTCAAAATCTTGATAA+CGG | 0.470965 | 4_2:-7117437 | None:intergenic |
| AAAGCTGAATAACAGCATTT+GGG | 0.472696 | 4_2:-7116685 | None:intergenic |
| GAAGACATTGCTACATGCCC+TGG | 0.473610 | 4_2:+7117370 | Msa0586020:CDS |
| TCAAGAGGTTTAGTAAAGAG+TGG | 0.474706 | 4_2:+7117457 | Msa0586020:CDS |
| CAAAAGGGTGTTTCTTAACA+AGG | 0.481935 | 4_2:-7116745 | None:intergenic |
| TTGCAACTCATAAACCCTAA+TGG | 0.484587 | 4_2:+7116662 | Msa0586020:CDS |
| GGACTTCTTGGTGAAGGATG+TGG | 0.492155 | 4_2:+7117336 | Msa0586020:CDS |
| TATGAGGTTTGACAATGTAA+AGG | 0.499828 | 4_2:-7116591 | None:intergenic |
| TGGGATTCTGACCCGCAACT+TGG | 0.503137 | 4_2:+7117390 | Msa0586020:CDS |
| TAGCTTTGAGGCGTGGATCG+TGG | 0.534432 | 4_2:+7116957 | Msa0586020:CDS |
| ATCAATGGTTGAAGCCCCAA+TGG | 0.538102 | 4_2:-7116822 | None:intergenic |
| TGATTCTGTTCTGAACATTG+AGG | 0.547517 | 4_2:+7117006 | Msa0586020:CDS |
| CAAGCATTCTAGATTTGTTG+AGG | 0.552143 | 4_2:+7117102 | Msa0586020:CDS |
| GACTTCTTGGTGAAGGATGT+GGG | 0.555487 | 4_2:+7117337 | Msa0586020:CDS |
| GCAATGAGAAAATGATACAT+TGG | 0.568531 | 4_2:-7116455 | None:intergenic |
| AAAACAAAATACAACTTCGA+AGG | 0.568698 | 4_2:-7117157 | None:intergenic |
| TCTGAGATCATCACATACTC+AGG | 0.569253 | 4_2:-7117292 | None:intergenic |
| TCAAACCTCATAAACTCATG+TGG | 0.578097 | 4_2:+7116602 | Msa0586020:CDS |
| AACAATGGACTTCTTGGTGA+AGG | 0.587900 | 4_2:+7117330 | Msa0586020:CDS |
| CAAGTGTCTTCTCCAAGTTG+CGG | 0.598205 | 4_2:-7117402 | None:intergenic |
| AAGACATTGCTACATGCCCT+GGG | 0.601471 | 4_2:+7117371 | Msa0586020:CDS |
| AAACTGGAAATAGAACTTTG+AGG | 0.609479 | 4_2:-7117049 | None:intergenic |
| TACCTTTATTATGACAAGTG+AGG | 0.612836 | 4_2:+7117492 | Msa0586020:CDS |
| TGGCAAATCTTTCTGAAATG+GGG | 0.627523 | 4_2:-7117539 | None:intergenic |
| TTATATGCATCCAATAACAA+TGG | 0.629215 | 4_2:-7117559 | None:intergenic |
| TTAATTCAGTAAAAGAAATG+GGG | 0.635626 | 4_2:+7117128 | Msa0586020:CDS |
| CAAACCTCATAAACTCATGT+GGG | 0.639091 | 4_2:+7116603 | Msa0586020:CDS |
| AAGCCCTTAAACTTTCAACA+AGG | 0.642886 | 4_2:+7116639 | Msa0586020:CDS |
| CAGAACAGAATCATTAACCA+TGG | 0.644655 | 4_2:-7116996 | None:intergenic |
| TGCTTGGTGAATGCTACACA+AGG | 0.683625 | 4_2:-7117085 | None:intergenic |
| AGTTGCGGGTCAGAATCCCA+GGG | 0.702455 | 4_2:-7117387 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGATAAAAGTACAAAA+GGG | - | chr4_2:7116763-7116782 | None:intergenic | 15.0% |
| !! | GAAAAAAATTATGAAAACAA+TGG | + | chr4_2:7117315-7117334 | Msa0586020:CDS | 15.0% |
| !!! | ATTTTGATAAAAGTACAAAA+GGG | - | chr4_2:7116763-7116782 | None:intergenic | 15.0% |
| !! | GAAAAAAATTATGAAAACAA+TGG | + | chr4_2:7117315-7117334 | Msa0586020:CDS | 15.0% |
| !!! | GATTTTGATAAAAGTACAAA+AGG | - | chr4_2:7116764-7116783 | None:intergenic | 20.0% |
| !! | TGTTAATTCAGTAAAAGAAA+TGG | + | chr4_2:7117126-7117145 | Msa0586020:CDS | 20.0% |
| !! | GTTAATTCAGTAAAAGAAAT+GGG | + | chr4_2:7117127-7117146 | Msa0586020:CDS | 20.0% |
| !! | TTAATTCAGTAAAAGAAATG+GGG | + | chr4_2:7117128-7117147 | Msa0586020:CDS | 20.0% |
| !!! | GATTTTGATAAAAGTACAAA+AGG | - | chr4_2:7116764-7116783 | None:intergenic | 20.0% |
| !! | TGTTAATTCAGTAAAAGAAA+TGG | + | chr4_2:7117126-7117145 | Msa0586020:CDS | 20.0% |
| !! | GTTAATTCAGTAAAAGAAAT+GGG | + | chr4_2:7117127-7117146 | Msa0586020:CDS | 20.0% |
| !! | TTAATTCAGTAAAAGAAATG+GGG | + | chr4_2:7117128-7117147 | Msa0586020:CDS | 20.0% |
| ! | AAGAACAGTAGTTGAATAAA+GGG | - | chr4_2:7116504-7116523 | None:intergenic | 25.0% |
| ! | AAAGAACAGTAGTTGAATAA+AGG | - | chr4_2:7116505-7116524 | None:intergenic | 25.0% |
| !!! | AAAAAGTAGTTTTAGCTTTG+AGG | + | chr4_2:7116945-7116964 | Msa0586020:CDS | 25.0% |
| ! | AAAACAAAATACAACTTCGA+AGG | - | chr4_2:7117160-7117179 | None:intergenic | 25.0% |
| !!! | TTCGAAGTTGTATTTTGTTT+TGG | + | chr4_2:7117159-7117178 | Msa0586020:CDS | 25.0% |
| ! | TAAGTATGGACAAAGAAATT+TGG | + | chr4_2:7117197-7117216 | Msa0586020:CDS | 25.0% |
| ! | AAGTATGGACAAAGAAATTT+GGG | + | chr4_2:7117198-7117217 | Msa0586020:CDS | 25.0% |
| !!! | AATTTAAGATTTTCGAGAGT+TGG | + | chr4_2:7117227-7117246 | Msa0586020:CDS | 25.0% |
| !!! | ATTTAAGATTTTCGAGAGTT+GGG | + | chr4_2:7117228-7117247 | Msa0586020:CDS | 25.0% |
| ! | TGACTTCAAAATCTTGATAA+CGG | - | chr4_2:7117440-7117459 | None:intergenic | 25.0% |
| ! | TTATATGCATCCAATAACAA+TGG | - | chr4_2:7117562-7117581 | None:intergenic | 25.0% |
| ! | AAGAACAGTAGTTGAATAAA+GGG | - | chr4_2:7116504-7116523 | None:intergenic | 25.0% |
| ! | AAAGAACAGTAGTTGAATAA+AGG | - | chr4_2:7116505-7116524 | None:intergenic | 25.0% |
| !!! | AAAAAGTAGTTTTAGCTTTG+AGG | + | chr4_2:7116945-7116964 | Msa0586020:CDS | 25.0% |
| ! | AAAACAAAATACAACTTCGA+AGG | - | chr4_2:7117160-7117179 | None:intergenic | 25.0% |
| !!! | TTCGAAGTTGTATTTTGTTT+TGG | + | chr4_2:7117159-7117178 | Msa0586020:CDS | 25.0% |
| ! | TAAGTATGGACAAAGAAATT+TGG | + | chr4_2:7117197-7117216 | Msa0586020:CDS | 25.0% |
| ! | AAGTATGGACAAAGAAATTT+GGG | + | chr4_2:7117198-7117217 | Msa0586020:CDS | 25.0% |
| !!! | AATTTAAGATTTTCGAGAGT+TGG | + | chr4_2:7117227-7117246 | Msa0586020:CDS | 25.0% |
| !!! | ATTTAAGATTTTCGAGAGTT+GGG | + | chr4_2:7117228-7117247 | Msa0586020:CDS | 25.0% |
| ! | TGACTTCAAAATCTTGATAA+CGG | - | chr4_2:7117440-7117459 | None:intergenic | 25.0% |
| ! | TTATATGCATCCAATAACAA+TGG | - | chr4_2:7117562-7117581 | None:intergenic | 25.0% |
| TCCAACACAAATCAACATAA+AGG | + | chr4_2:7116563-7116582 | Msa0586020:CDS | 30.0% | |
| !! | ACCTTTATGTTGATTTGTGT+TGG | - | chr4_2:7116567-7116586 | None:intergenic | 30.0% |
| TATGAGGTTTGACAATGTAA+AGG | - | chr4_2:7116594-7116613 | None:intergenic | 30.0% | |
| CAACCTTGTTGAAAGTTTAA+GGG | - | chr4_2:7116645-7116664 | None:intergenic | 30.0% | |
| AAAGCTGAATAACAGCATTT+GGG | - | chr4_2:7116688-7116707 | None:intergenic | 30.0% | |
| AAAAGCTGAATAACAGCATT+TGG | - | chr4_2:7116689-7116708 | None:intergenic | 30.0% | |
| !! | AAACTTGAGTTTTGGCAAAA+GGG | - | chr4_2:7116795-7116814 | None:intergenic | 30.0% |
| !! | AAAACTTGAGTTTTGGCAAA+AGG | - | chr4_2:7116796-7116815 | None:intergenic | 30.0% |
| ! | GATTGCAAAAACTTGAGTTT+TGG | - | chr4_2:7116803-7116822 | None:intergenic | 30.0% |
| ! | TCAAGTTTTTGCAATCCATT+GGG | + | chr4_2:7116807-7116826 | Msa0586020:CDS | 30.0% |
| ! | TTGTCACCAATCAAGATTTT+GGG | - | chr4_2:7116851-7116870 | None:intergenic | 30.0% |
| !! | CTTTTAAGAATCTTGTAACG+AGG | - | chr4_2:7116908-7116927 | None:intergenic | 30.0% |
| !!! | CTTTTTTATCATCGCAAACT+AGG | - | chr4_2:7116931-7116950 | None:intergenic | 30.0% |
| ! | GAACTTTTACAATGATTCCA+TGG | + | chr4_2:7116979-7116998 | Msa0586020:CDS | 30.0% |
| AAACTGGAAATAGAACTTTG+AGG | - | chr4_2:7117052-7117071 | None:intergenic | 30.0% | |
| TCAAAGTTCTATTTCCAGTT+TGG | + | chr4_2:7117051-7117070 | Msa0586020:CDS | 30.0% | |
| GATTCGAGTAATTGTAAGTA+TGG | + | chr4_2:7117183-7117202 | Msa0586020:CDS | 30.0% | |
| !! | TTTAAGATTTTCGAGAGTTG+GGG | + | chr4_2:7117229-7117248 | Msa0586020:CDS | 30.0% |
| ! | TATGAAAACAATGGACTTCT+TGG | + | chr4_2:7117324-7117343 | Msa0586020:CDS | 30.0% |
| !!! | ATCAAGATTTTGAAGTCAAG+AGG | + | chr4_2:7117442-7117461 | Msa0586020:CDS | 30.0% |
| TACCTTTATTATGACAAGTG+AGG | + | chr4_2:7117492-7117511 | Msa0586020:CDS | 30.0% | |
| TTCCTCACTTGTCATAATAA+AGG | - | chr4_2:7117497-7117516 | None:intergenic | 30.0% | |
| !! | ATGGCAAATCTTTCTGAAAT+GGG | - | chr4_2:7117543-7117562 | None:intergenic | 30.0% |
| ! | AATGGCAAATCTTTCTGAAA+TGG | - | chr4_2:7117544-7117563 | None:intergenic | 30.0% |
| GAAAGATTTGCCATTGTTAT+TGG | + | chr4_2:7117549-7117568 | Msa0586020:CDS | 30.0% | |
| TCCAACACAAATCAACATAA+AGG | + | chr4_2:7116563-7116582 | Msa0586020:CDS | 30.0% | |
| !! | ACCTTTATGTTGATTTGTGT+TGG | - | chr4_2:7116567-7116586 | None:intergenic | 30.0% |
| TATGAGGTTTGACAATGTAA+AGG | - | chr4_2:7116594-7116613 | None:intergenic | 30.0% | |
| CAACCTTGTTGAAAGTTTAA+GGG | - | chr4_2:7116645-7116664 | None:intergenic | 30.0% | |
| AAAGCTGAATAACAGCATTT+GGG | - | chr4_2:7116688-7116707 | None:intergenic | 30.0% | |
| AAAAGCTGAATAACAGCATT+TGG | - | chr4_2:7116689-7116708 | None:intergenic | 30.0% | |
| !! | AAACTTGAGTTTTGGCAAAA+GGG | - | chr4_2:7116795-7116814 | None:intergenic | 30.0% |
| !! | AAAACTTGAGTTTTGGCAAA+AGG | - | chr4_2:7116796-7116815 | None:intergenic | 30.0% |
| ! | GATTGCAAAAACTTGAGTTT+TGG | - | chr4_2:7116803-7116822 | None:intergenic | 30.0% |
| ! | TCAAGTTTTTGCAATCCATT+GGG | + | chr4_2:7116807-7116826 | Msa0586020:CDS | 30.0% |
| ! | TTGTCACCAATCAAGATTTT+GGG | - | chr4_2:7116851-7116870 | None:intergenic | 30.0% |
| !! | CTTTTAAGAATCTTGTAACG+AGG | - | chr4_2:7116908-7116927 | None:intergenic | 30.0% |
| !!! | CTTTTTTATCATCGCAAACT+AGG | - | chr4_2:7116931-7116950 | None:intergenic | 30.0% |
| ! | GAACTTTTACAATGATTCCA+TGG | + | chr4_2:7116979-7116998 | Msa0586020:CDS | 30.0% |
| AAACTGGAAATAGAACTTTG+AGG | - | chr4_2:7117052-7117071 | None:intergenic | 30.0% | |
| TCAAAGTTCTATTTCCAGTT+TGG | + | chr4_2:7117051-7117070 | Msa0586020:CDS | 30.0% | |
| GATTCGAGTAATTGTAAGTA+TGG | + | chr4_2:7117183-7117202 | Msa0586020:CDS | 30.0% | |
| !! | TTTAAGATTTTCGAGAGTTG+GGG | + | chr4_2:7117229-7117248 | Msa0586020:CDS | 30.0% |
| ! | TATGAAAACAATGGACTTCT+TGG | + | chr4_2:7117324-7117343 | Msa0586020:CDS | 30.0% |
| !!! | ATCAAGATTTTGAAGTCAAG+AGG | + | chr4_2:7117442-7117461 | Msa0586020:CDS | 30.0% |
| TACCTTTATTATGACAAGTG+AGG | + | chr4_2:7117492-7117511 | Msa0586020:CDS | 30.0% | |
| TTCCTCACTTGTCATAATAA+AGG | - | chr4_2:7117497-7117516 | None:intergenic | 30.0% | |
| !! | ATGGCAAATCTTTCTGAAAT+GGG | - | chr4_2:7117543-7117562 | None:intergenic | 30.0% |
| ! | AATGGCAAATCTTTCTGAAA+TGG | - | chr4_2:7117544-7117563 | None:intergenic | 30.0% |
| GAAAGATTTGCCATTGTTAT+TGG | + | chr4_2:7117549-7117568 | Msa0586020:CDS | 30.0% | |
| ACAGCAGAGAAAAGTGAAAA+AGG | - | chr4_2:7116542-7116561 | None:intergenic | 35.0% | |
| TCAAACCTCATAAACTCATG+TGG | + | chr4_2:7116602-7116621 | Msa0586020:CDS | 35.0% | |
| CAAACCTCATAAACTCATGT+GGG | + | chr4_2:7116603-7116622 | Msa0586020:CDS | 35.0% | |
| AAGCCCTTAAACTTTCAACA+AGG | + | chr4_2:7116639-7116658 | Msa0586020:CDS | 35.0% | |
| GCAACCTTGTTGAAAGTTTA+AGG | - | chr4_2:7116646-7116665 | None:intergenic | 35.0% | |
| TTGCAACTCATAAACCCTAA+TGG | + | chr4_2:7116662-7116681 | Msa0586020:CDS | 35.0% | |
| ! | ATTCAGCTTTTCAGAAGCTA+TGG | + | chr4_2:7116698-7116717 | Msa0586020:CDS | 35.0% |
| !! | CAAAAGGGTGTTTCTTAACA+AGG | - | chr4_2:7116748-7116767 | None:intergenic | 35.0% |
| ! | CTCAAGTTTTTGCAATCCAT+TGG | + | chr4_2:7116806-7116825 | Msa0586020:CDS | 35.0% |
| ! | CAAGTTTTTGCAATCCATTG+GGG | + | chr4_2:7116808-7116827 | Msa0586020:CDS | 35.0% |
| !! | CAAGATTTTGGGGAAATCAA+TGG | - | chr4_2:7116840-7116859 | None:intergenic | 35.0% |
| GATTTCCCCAAAATCTTGAT+TGG | + | chr4_2:7116842-7116861 | Msa0586020:CDS | 35.0% | |
| ! | TGTCACCAATCAAGATTTTG+GGG | - | chr4_2:7116850-7116869 | None:intergenic | 35.0% |
| ! | CTTGTCACCAATCAAGATTT+TGG | - | chr4_2:7116852-7116871 | None:intergenic | 35.0% |
| CAGAACAGAATCATTAACCA+TGG | - | chr4_2:7116999-7117018 | None:intergenic | 35.0% | |
| ! | TGATTCTGTTCTGAACATTG+AGG | + | chr4_2:7117006-7117025 | Msa0586020:CDS | 35.0% |
| ! | TTCTGAACATTGAGGTTTTG+AGG | + | chr4_2:7117014-7117033 | Msa0586020:CDS | 35.0% |
| AGGAAAATTCGATACCAAAC+TGG | - | chr4_2:7117068-7117087 | None:intergenic | 35.0% | |
| ! | CTCAACAAATCTAGAATGCT+TGG | - | chr4_2:7117104-7117123 | None:intergenic | 35.0% |
| !! | CAAGCATTCTAGATTTGTTG+AGG | + | chr4_2:7117102-7117121 | Msa0586020:CDS | 35.0% |
| TCACATACTCAGGATACTTT+AGG | - | chr4_2:7117285-7117304 | None:intergenic | 35.0% | |
| !! | TCTTGATAACGGCACATTTA+GGG | - | chr4_2:7117429-7117448 | None:intergenic | 35.0% |
| !! | ATCTTGATAACGGCACATTT+AGG | - | chr4_2:7117430-7117449 | None:intergenic | 35.0% |
| TCAAGAGGTTTAGTAAAGAG+TGG | + | chr4_2:7117457-7117476 | Msa0586020:CDS | 35.0% | |
| !! | TGGCAAATCTTTCTGAAATG+GGG | - | chr4_2:7117542-7117561 | None:intergenic | 35.0% |
| ACAGCAGAGAAAAGTGAAAA+AGG | - | chr4_2:7116542-7116561 | None:intergenic | 35.0% | |
| TCAAACCTCATAAACTCATG+TGG | + | chr4_2:7116602-7116621 | Msa0586020:CDS | 35.0% | |
| CAAACCTCATAAACTCATGT+GGG | + | chr4_2:7116603-7116622 | Msa0586020:CDS | 35.0% | |
| AAGCCCTTAAACTTTCAACA+AGG | + | chr4_2:7116639-7116658 | Msa0586020:CDS | 35.0% | |
| GCAACCTTGTTGAAAGTTTA+AGG | - | chr4_2:7116646-7116665 | None:intergenic | 35.0% | |
| TTGCAACTCATAAACCCTAA+TGG | + | chr4_2:7116662-7116681 | Msa0586020:CDS | 35.0% | |
| ! | ATTCAGCTTTTCAGAAGCTA+TGG | + | chr4_2:7116698-7116717 | Msa0586020:CDS | 35.0% |
| !! | CAAAAGGGTGTTTCTTAACA+AGG | - | chr4_2:7116748-7116767 | None:intergenic | 35.0% |
| ! | CTCAAGTTTTTGCAATCCAT+TGG | + | chr4_2:7116806-7116825 | Msa0586020:CDS | 35.0% |
| ! | CAAGTTTTTGCAATCCATTG+GGG | + | chr4_2:7116808-7116827 | Msa0586020:CDS | 35.0% |
| !! | CAAGATTTTGGGGAAATCAA+TGG | - | chr4_2:7116840-7116859 | None:intergenic | 35.0% |
| GATTTCCCCAAAATCTTGAT+TGG | + | chr4_2:7116842-7116861 | Msa0586020:CDS | 35.0% | |
| ! | TGTCACCAATCAAGATTTTG+GGG | - | chr4_2:7116850-7116869 | None:intergenic | 35.0% |
| ! | CTTGTCACCAATCAAGATTT+TGG | - | chr4_2:7116852-7116871 | None:intergenic | 35.0% |
| CAGAACAGAATCATTAACCA+TGG | - | chr4_2:7116999-7117018 | None:intergenic | 35.0% | |
| ! | TGATTCTGTTCTGAACATTG+AGG | + | chr4_2:7117006-7117025 | Msa0586020:CDS | 35.0% |
| ! | TTCTGAACATTGAGGTTTTG+AGG | + | chr4_2:7117014-7117033 | Msa0586020:CDS | 35.0% |
| AGGAAAATTCGATACCAAAC+TGG | - | chr4_2:7117068-7117087 | None:intergenic | 35.0% | |
| ! | CTCAACAAATCTAGAATGCT+TGG | - | chr4_2:7117104-7117123 | None:intergenic | 35.0% |
| !! | CAAGCATTCTAGATTTGTTG+AGG | + | chr4_2:7117102-7117121 | Msa0586020:CDS | 35.0% |
| TCACATACTCAGGATACTTT+AGG | - | chr4_2:7117285-7117304 | None:intergenic | 35.0% | |
| !! | TCTTGATAACGGCACATTTA+GGG | - | chr4_2:7117429-7117448 | None:intergenic | 35.0% |
| !! | ATCTTGATAACGGCACATTT+AGG | - | chr4_2:7117430-7117449 | None:intergenic | 35.0% |
| TCAAGAGGTTTAGTAAAGAG+TGG | + | chr4_2:7117457-7117476 | Msa0586020:CDS | 35.0% | |
| !! | TGGCAAATCTTTCTGAAATG+GGG | - | chr4_2:7117542-7117561 | None:intergenic | 35.0% |
| ACAACCCACATGAGTTTATG+AGG | - | chr4_2:7116610-7116629 | None:intergenic | 40.0% | |
| TAACAGCATTTGGGCCATTA+GGG | - | chr4_2:7116679-7116698 | None:intergenic | 40.0% | |
| ATAACAGCATTTGGGCCATT+AGG | - | chr4_2:7116680-7116699 | None:intergenic | 40.0% | |
| ! | CAAGTTTTTGACAGCAAGCT+TGG | + | chr4_2:7116868-7116887 | Msa0586020:CDS | 40.0% |
| !!! | ATTGAGGTTTTGAGGAAGCT+TGG | + | chr4_2:7117022-7117041 | Msa0586020:CDS | 40.0% |
| ! | TCTGAGATCATCACATACTC+AGG | - | chr4_2:7117295-7117314 | None:intergenic | 40.0% |
| ! | AACAATGGACTTCTTGGTGA+AGG | + | chr4_2:7117330-7117349 | Msa0586020:CDS | 40.0% |
| ACAACCCACATGAGTTTATG+AGG | - | chr4_2:7116610-7116629 | None:intergenic | 40.0% | |
| TAACAGCATTTGGGCCATTA+GGG | - | chr4_2:7116679-7116698 | None:intergenic | 40.0% | |
| ATAACAGCATTTGGGCCATT+AGG | - | chr4_2:7116680-7116699 | None:intergenic | 40.0% | |
| ! | CAAGTTTTTGACAGCAAGCT+TGG | + | chr4_2:7116868-7116887 | Msa0586020:CDS | 40.0% |
| !!! | ATTGAGGTTTTGAGGAAGCT+TGG | + | chr4_2:7117022-7117041 | Msa0586020:CDS | 40.0% |
| ! | TCTGAGATCATCACATACTC+AGG | - | chr4_2:7117295-7117314 | None:intergenic | 40.0% |
| ! | AACAATGGACTTCTTGGTGA+AGG | + | chr4_2:7117330-7117349 | Msa0586020:CDS | 40.0% |
| ATCAATGGTTGAAGCCCCAA+TGG | - | chr4_2:7116825-7116844 | None:intergenic | 45.0% | |
| !!! | GTAGTTTTAGCTTTGAGGCG+TGG | + | chr4_2:7116950-7116969 | Msa0586020:CDS | 45.0% |
| ! | TGCTTGGTGAATGCTACACA+AGG | - | chr4_2:7117088-7117107 | None:intergenic | 45.0% |
| GACTTCTTGGTGAAGGATGT+GGG | + | chr4_2:7117337-7117356 | Msa0586020:CDS | 45.0% | |
| AAGACATTGCTACATGCCCT+GGG | + | chr4_2:7117371-7117390 | Msa0586020:CDS | 45.0% | |
| AAGTGTCTTCTCCAAGTTGC+GGG | - | chr4_2:7117404-7117423 | None:intergenic | 45.0% | |
| CAAGTGTCTTCTCCAAGTTG+CGG | - | chr4_2:7117405-7117424 | None:intergenic | 45.0% | |
| ATCAATGGTTGAAGCCCCAA+TGG | - | chr4_2:7116825-7116844 | None:intergenic | 45.0% | |
| !!! | GTAGTTTTAGCTTTGAGGCG+TGG | + | chr4_2:7116950-7116969 | Msa0586020:CDS | 45.0% |
| ! | TGCTTGGTGAATGCTACACA+AGG | - | chr4_2:7117088-7117107 | None:intergenic | 45.0% |
| GACTTCTTGGTGAAGGATGT+GGG | + | chr4_2:7117337-7117356 | Msa0586020:CDS | 45.0% | |
| AAGACATTGCTACATGCCCT+GGG | + | chr4_2:7117371-7117390 | Msa0586020:CDS | 45.0% | |
| AAGTGTCTTCTCCAAGTTGC+GGG | - | chr4_2:7117404-7117423 | None:intergenic | 45.0% | |
| CAAGTGTCTTCTCCAAGTTG+CGG | - | chr4_2:7117405-7117424 | None:intergenic | 45.0% | |
| !! | AGATTTTCGAGAGTTGGGGC+TGG | + | chr4_2:7117233-7117252 | Msa0586020:CDS | 50.0% |
| GGACTTCTTGGTGAAGGATG+TGG | + | chr4_2:7117336-7117355 | Msa0586020:CDS | 50.0% | |
| GGGCATGTAGCAATGTCTTC+TGG | - | chr4_2:7117370-7117389 | None:intergenic | 50.0% | |
| GAAGACATTGCTACATGCCC+TGG | + | chr4_2:7117370-7117389 | Msa0586020:CDS | 50.0% | |
| !! | AGATTTTCGAGAGTTGGGGC+TGG | + | chr4_2:7117233-7117252 | Msa0586020:CDS | 50.0% |
| GGACTTCTTGGTGAAGGATG+TGG | + | chr4_2:7117336-7117355 | Msa0586020:CDS | 50.0% | |
| GGGCATGTAGCAATGTCTTC+TGG | - | chr4_2:7117370-7117389 | None:intergenic | 50.0% | |
| GAAGACATTGCTACATGCCC+TGG | + | chr4_2:7117370-7117389 | Msa0586020:CDS | 50.0% | |
| !! | TAGCTTTGAGGCGTGGATCG+TGG | + | chr4_2:7116957-7116976 | Msa0586020:CDS | 55.0% |
| AGTTGCGGGTCAGAATCCCA+GGG | - | chr4_2:7117390-7117409 | None:intergenic | 55.0% | |
| AAGTTGCGGGTCAGAATCCC+AGG | - | chr4_2:7117391-7117410 | None:intergenic | 55.0% | |
| TGGGATTCTGACCCGCAACT+TGG | + | chr4_2:7117390-7117409 | Msa0586020:CDS | 55.0% | |
| !! | TAGCTTTGAGGCGTGGATCG+TGG | + | chr4_2:7116957-7116976 | Msa0586020:CDS | 55.0% |
| AGTTGCGGGTCAGAATCCCA+GGG | - | chr4_2:7117390-7117409 | None:intergenic | 55.0% | |
| AAGTTGCGGGTCAGAATCCC+AGG | - | chr4_2:7117391-7117410 | None:intergenic | 55.0% | |
| TGGGATTCTGACCCGCAACT+TGG | + | chr4_2:7117390-7117409 | Msa0586020:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 7116458 | 7117600 | 7116458 | ID=Msa0586020;Name=Msa0586020 |
| chr4_2 | mRNA | 7116458 | 7117600 | 7116458 | ID=Msa0586020-mRNA-1;Parent=Msa0586020;Name=Msa0586020-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|-1|0|1|-1|1|1|0|380 |
| chr4_2 | exon | 7116458 | 7117600 | 7116458 | ID=Msa0586020-mRNA-1:exon:1791;Parent=Msa0586020-mRNA-1 |
| chr4_2 | CDS | 7116458 | 7117600 | 7116458 | ID=Msa0586020-mRNA-1:cds;Parent=Msa0586020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
