Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586550 | XP_003630250.1 | 94.135 | 665 | 39 | 0 | 14 | 678 | 115 | 779 | 0.0 | 1313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586550 | sp|Q9LIH5|C3H38_ARATH | 34.074 | 405 | 204 | 14 | 315 | 678 | 294 | 676 | 5.95e-42 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586550 | G7LE04 | 94.135 | 665 | 39 | 0 | 14 | 678 | 115 | 779 | 0.0 | 1313 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0586550 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586550 | MtrunA17_Chr8g0384131 | 94.135 | 665 | 39 | 0 | 14 | 678 | 115 | 779 | 0.0 | 1313 |
| Msa0586550 | MtrunA17_Chr3g0129941 | 48.498 | 666 | 257 | 16 | 71 | 678 | 333 | 970 | 2.59e-179 | 535 |
| Msa0586550 | MtrunA17_Chr3g0129941 | 62.810 | 121 | 43 | 2 | 17 | 135 | 124 | 244 | 2.65e-38 | 152 |
| Msa0586550 | MtrunA17_Chr2g0308451 | 32.524 | 206 | 106 | 5 | 498 | 678 | 1251 | 1448 | 1.25e-19 | 94.4 |
| Msa0586550 | MtrunA17_Chr2g0282581 | 40.964 | 83 | 49 | 0 | 592 | 674 | 805 | 887 | 1.22e-14 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586550 | AT3G18640.3 | 34.074 | 405 | 204 | 14 | 315 | 678 | 294 | 676 | 6.05e-43 | 165 |
| Msa0586550 | AT3G18640.1 | 34.074 | 405 | 204 | 14 | 315 | 678 | 294 | 676 | 6.05e-43 | 165 |
| Msa0586550 | AT3G18640.2 | 34.074 | 405 | 204 | 14 | 315 | 678 | 294 | 676 | 6.05e-43 | 165 |
| Msa0586550 | AT2G10553.1 | 62.500 | 80 | 30 | 0 | 598 | 677 | 2 | 81 | 1.12e-28 | 109 |
| Msa0586550 | AT3G26850.2 | 34.641 | 153 | 93 | 2 | 530 | 678 | 116 | 265 | 9.18e-22 | 95.9 |
| Msa0586550 | AT3G26850.1 | 34.641 | 153 | 93 | 2 | 530 | 678 | 116 | 265 | 9.18e-22 | 95.9 |
| Msa0586550 | AT2G33835.1 | 39.394 | 99 | 57 | 2 | 580 | 677 | 490 | 586 | 1.43e-15 | 80.9 |
Find 183 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCATCAGGTCCATCATTT+TGG | 0.185844 | 4_2:-7792994 | None:intergenic |
| GCAACTGAATCGCTCAATTT+TGG | 0.198692 | 4_2:-7791720 | None:intergenic |
| CATTTACCAGCCCTAGATTA+AGG | 0.209423 | 4_2:+7791649 | Msa0586550:CDS |
| CTCATGGGGATTAGAATATC+TGG | 0.229022 | 4_2:-7791325 | None:intergenic |
| TCCTTCTTATCAATTGAAAA+TGG | 0.244006 | 4_2:-7791978 | None:intergenic |
| TTCATTGGTAGAGCTTATTA+AGG | 0.265977 | 4_2:+7793060 | Msa0586550:CDS |
| TGTCTCCGGTACAGTAAATT+TGG | 0.302213 | 4_2:+7791842 | Msa0586550:CDS |
| CAAGCCATGAATCCAGGTTC+TGG | 0.318914 | 4_2:-7791897 | None:intergenic |
| TGGCCGATGTAGATAAAGTT+TGG | 0.319460 | 4_2:+7791790 | Msa0586550:CDS |
| CCCATGAATATTAGTGCAAA+TGG | 0.330779 | 4_2:+7792776 | Msa0586550:CDS |
| ATCAAGCCAGATCCTGCTAT+TGG | 0.331025 | 4_2:+7792716 | Msa0586550:CDS |
| CCCATTTGCACTAATATTCA+TGG | 0.335498 | 4_2:-7792777 | None:intergenic |
| ATGTCTCCTGATTGGAATTA+TGG | 0.341445 | 4_2:+7792089 | Msa0586550:CDS |
| AGCGATTCAGTTGCTCCTAA+TGG | 0.355166 | 4_2:+7791729 | Msa0586550:CDS |
| TGATGGGTTTGATAAAATTT+CGG | 0.356095 | 4_2:+7791458 | Msa0586550:CDS |
| AATAACAGTTGCCTAATGTT+TGG | 0.356794 | 4_2:-7794754 | None:intergenic |
| TGATCCAATGTTTGACAGTA+TGG | 0.360762 | 4_2:+7792751 | Msa0586550:CDS |
| AGCCTATCACAAATCGGTTC+TGG | 0.370700 | 4_2:+7792497 | Msa0586550:CDS |
| GAATATAACTGCTTCCCATT+TGG | 0.376514 | 4_2:+7792352 | Msa0586550:CDS |
| GTTATTCAGCTGTCGATGAT+AGG | 0.378174 | 4_2:+7791157 | Msa0586550:CDS |
| CACCCCAGAACCTGGATTCA+TGG | 0.383361 | 4_2:+7791893 | Msa0586550:CDS |
| TGTATAAGTTTGTTAACCTT+TGG | 0.384179 | 4_2:-7793238 | None:intergenic |
| GACCCATCATCCCTTAATCT+AGG | 0.385299 | 4_2:-7791660 | None:intergenic |
| CCTCATAACTTTGCTTATCA+TGG | 0.387218 | 4_2:-7791269 | None:intergenic |
| CTTGACTTTGTCCAACCAAA+TGG | 0.387671 | 4_2:-7792367 | None:intergenic |
| CCTTCAATAATTCTTGCTCC+TGG | 0.398199 | 4_2:-7792410 | None:intergenic |
| TTGATGAATGTCATAGAAAC+AGG | 0.398984 | 4_2:-7792698 | None:intergenic |
| AAGGTTACTGATAAAGTAAC+TGG | 0.399020 | 4_2:+7793148 | Msa0586550:CDS |
| ATTTACCAGCCCTAGATTAA+GGG | 0.399284 | 4_2:+7791650 | Msa0586550:CDS |
| GTCGGAATGGTAAAGATTGT+AGG | 0.407509 | 4_2:+7791607 | Msa0586550:CDS |
| TTTCGGCAGATGAATCATCT+AGG | 0.418420 | 4_2:+7791475 | Msa0586550:CDS |
| TTAGAATATCTGGGTCCATC+TGG | 0.423271 | 4_2:-7791315 | None:intergenic |
| TGCAAAGGGAAGGTGTAGAA+TGG | 0.424935 | 4_2:+7791401 | Msa0586550:CDS |
| GAGAGTAGCCTTTGCATCAC+AGG | 0.432367 | 4_2:-7792645 | None:intergenic |
| TTATAAAACAATTGTGAAGA+AGG | 0.434641 | 4_2:+7793129 | Msa0586550:CDS |
| TCATCTCTTAGCCTTCCATT+AGG | 0.435290 | 4_2:-7791744 | None:intergenic |
| GGCCGATGTAGATAAAGTTT+GGG | 0.438991 | 4_2:+7791791 | Msa0586550:CDS |
| AATCTTTATACTAGGAGAAA+AGG | 0.440601 | 4_2:-7792810 | None:intergenic |
| CCATGAATATTAGTGCAAAT+GGG | 0.440948 | 4_2:+7792777 | Msa0586550:CDS |
| AGCAAAGTTATGAGGATAGC+AGG | 0.443006 | 4_2:+7791277 | Msa0586550:CDS |
| TTGCTGACTCCGTTCTGAGT+TGG | 0.443876 | 4_2:-7792527 | None:intergenic |
| TACAGAAGAGAATAGTCCTA+TGG | 0.445294 | 4_2:+7792961 | Msa0586550:CDS |
| TTCCCTCAATTGCATCAAAC+AGG | 0.445579 | 4_2:-7794786 | None:intergenic |
| CTTTGGATATTGCCAGGTCT+AGG | 0.450951 | 4_2:+7791100 | None:intergenic |
| TGTGCAGGCGTATGTGGAAA+AGG | 0.452314 | 4_2:+7794455 | Msa0586550:intron |
| ATCATAGGCACCCCAGAACC+TGG | 0.453783 | 4_2:+7791885 | Msa0586550:CDS |
| TTCAATCCAATAGCAGGATC+TGG | 0.454738 | 4_2:-7792722 | None:intergenic |
| TAGTTTACAAACCAAACATT+AGG | 0.456296 | 4_2:+7794743 | Msa0586550:three_prime_UTR |
| TGGCCAATGAACGATGGATC+GGG | 0.459051 | 4_2:+7791918 | Msa0586550:CDS |
| AAGCCATGAATCCAGGTTCT+GGG | 0.459163 | 4_2:-7791896 | None:intergenic |
| ATGCTCATCTTTAATATGAC+TGG | 0.462728 | 4_2:-7792123 | None:intergenic |
| AAAGGTTAACAAACTTATAC+AGG | 0.465005 | 4_2:+7793240 | Msa0586550:CDS |
| GATGCAAAGGCTACTCTCTT+CGG | 0.465991 | 4_2:+7792650 | Msa0586550:CDS |
| GGGAAAGGGAAATTGATAGA+AGG | 0.468456 | 4_2:+7791496 | Msa0586550:CDS |
| TGTCCTAGGTTAGATAATAG+TGG | 0.470060 | 4_2:-7792857 | None:intergenic |
| ACATGCCTCCACCTACTGAC+TGG | 0.474548 | 4_2:-7792049 | None:intergenic |
| TTCTGTTCCTGTCTAAGCTA+TGG | 0.475586 | 4_2:-7791941 | None:intergenic |
| GCAAAGGGAAGGTGTAGAAT+GGG | 0.479280 | 4_2:+7791402 | Msa0586550:CDS |
| CTCGCACCATAATTCCAATC+AGG | 0.479580 | 4_2:-7792095 | None:intergenic |
| CAGAACCTGGATTCATGGCT+TGG | 0.479795 | 4_2:+7791898 | Msa0586550:CDS |
| TCGTGCATTTAAATCTTCAT+TGG | 0.481043 | 4_2:+7793045 | Msa0586550:CDS |
| ATAACTGCTTCCCATTTGGT+TGG | 0.482978 | 4_2:+7792356 | Msa0586550:CDS |
| CTTCAATAATTCTTGCTCCT+GGG | 0.486119 | 4_2:-7792409 | None:intergenic |
| AGCCCTAGATTAAGGGATGA+TGG | 0.489478 | 4_2:+7791657 | Msa0586550:CDS |
| GAGAATAATCCCCACTCTCA+TGG | 0.492546 | 4_2:-7791341 | None:intergenic |
| CTCTTCGGAAGCAAAATTGA+AGG | 0.493466 | 4_2:+7792665 | Msa0586550:CDS |
| GGAGTGTTACTGATGTGGTT+TGG | 0.493594 | 4_2:-7791558 | None:intergenic |
| ATTGGCCAAGCCATGAATCC+AGG | 0.494986 | 4_2:-7791903 | None:intergenic |
| TAAAACCATGTGGAGGGCTC+CGG | 0.496685 | 4_2:-7791134 | None:intergenic |
| GTCCAGAACCGATTTGTGAT+AGG | 0.498070 | 4_2:-7792499 | None:intergenic |
| TACTGTTTCAATCCAATAGC+AGG | 0.498333 | 4_2:-7792728 | None:intergenic |
| GAGTAATCAAGGTGAAGATC+AGG | 0.501418 | 4_2:+7791686 | Msa0586550:CDS |
| GCTTGCATTTATTATGCAAA+GGG | 0.501531 | 4_2:+7791387 | Msa0586550:CDS |
| TGGCCCGATCCATCGTTCAT+TGG | 0.506131 | 4_2:-7791921 | None:intergenic |
| ACTGATTTAGTTGCTGTCTC+CGG | 0.506800 | 4_2:+7791828 | Msa0586550:CDS |
| AGAATAATCCCCACTCTCAT+GGG | 0.507875 | 4_2:-7791340 | None:intergenic |
| ATGAACAGATGTCTCCTGAT+TGG | 0.507885 | 4_2:+7792081 | Msa0586550:CDS |
| TTCAATAATTCTTGCTCCTG+GGG | 0.510891 | 4_2:-7792408 | None:intergenic |
| CCATGATAAGCAAAGTTATG+AGG | 0.511629 | 4_2:+7791269 | Msa0586550:CDS |
| GTAGGTGGAGGCATGTGGCC+TGG | 0.514213 | 4_2:+7792056 | Msa0586550:CDS |
| TTTATACTAGGAGAAAAGGT+TGG | 0.514656 | 4_2:-7792806 | None:intergenic |
| AGTAAGCAGCAAGTTGCTCC+AGG | 0.516368 | 4_2:+7792152 | Msa0586550:CDS |
| CAAGAAAACAAAGGACGCGA+AGG | 0.517471 | 4_2:+7793018 | Msa0586550:CDS |
| CTCAACCAAATTTACTGTAC+CGG | 0.518942 | 4_2:-7791847 | None:intergenic |
| CTCGCACATATCCTCGGAAC+TGG | 0.519764 | 4_2:+7792587 | Msa0586550:CDS |
| CTGAAACCAACATGGAAAGA+TGG | 0.520966 | 4_2:+7793088 | Msa0586550:CDS |
| TTGACTTTGTCCAACCAAAT+GGG | 0.521411 | 4_2:-7792366 | None:intergenic |
| TGTTGTATAAATATAAACTC+AGG | 0.521664 | 4_2:+7794658 | Msa0586550:three_prime_UTR |
| TTGCCAGGTCTAGGAGAAGT+AGG | 0.522537 | 4_2:+7791109 | Msa0586550:CDS |
| TTAGAGTAGAATGAACTTGT+GGG | 0.523416 | 4_2:-7792619 | None:intergenic |
| TTGGCCAATGAACGATGGAT+CGG | 0.523666 | 4_2:+7791917 | Msa0586550:CDS |
| TTACCTGTTTGATGCAATTG+AGG | 0.523769 | 4_2:+7794783 | Msa0586550:three_prime_UTR |
| CATAGAGCAATCATTCAAGC+AGG | 0.525287 | 4_2:+7791521 | Msa0586550:CDS |
| CGGTACAGTAAATTTGGTTG+AGG | 0.530921 | 4_2:+7791848 | Msa0586550:CDS |
| ACCCATCATCCCTTAATCTA+GGG | 0.533043 | 4_2:-7791659 | None:intergenic |
| ATCATCCCTTAATCTAGGGC+TGG | 0.535552 | 4_2:-7791655 | None:intergenic |
| ACAGAAGAGAATAGTCCTAT+GGG | 0.535719 | 4_2:+7792962 | Msa0586550:CDS |
| AATGCAAGCCTATCACAAAT+CGG | 0.539727 | 4_2:+7792491 | Msa0586550:CDS |
| AGATGAATCATCTAGGGAAA+GGG | 0.544094 | 4_2:+7791482 | Msa0586550:CDS |
| ATTCTAATCCCCATGAGAGT+GGG | 0.544443 | 4_2:+7791331 | Msa0586550:CDS |
| CATGCCTCCACCTACTGACT+GGG | 0.545247 | 4_2:-7792048 | None:intergenic |
| GGAGACATGGACCAAAATGA+TGG | 0.546029 | 4_2:+7792983 | Msa0586550:CDS |
| AGCTTGCATTTATTATGCAA+AGG | 0.547591 | 4_2:+7791386 | Msa0586550:CDS |
| TTTAGAGTAGAATGAACTTG+TGG | 0.547988 | 4_2:-7792620 | None:intergenic |
| CTCATTTCCCAGTCAGTAGG+TGG | 0.549087 | 4_2:+7792041 | Msa0586550:CDS |
| AAGAAAACAAAGGACGCGAA+GGG | 0.550204 | 4_2:+7793019 | Msa0586550:CDS |
| ATACTAGGAGAAAAGGTTGG+AGG | 0.551278 | 4_2:-7792803 | None:intergenic |
| GCCTCTCTCGCACATATCCT+CGG | 0.552753 | 4_2:+7792581 | Msa0586550:CDS |
| CCAGGAGCAAGAATTATTGA+AGG | 0.556088 | 4_2:+7792410 | Msa0586550:CDS |
| CCATTTGCACTAATATTCAT+GGG | 0.556712 | 4_2:-7792776 | None:intergenic |
| AGTCAGTAGGTGGAGGCATG+TGG | 0.556809 | 4_2:+7792051 | Msa0586550:CDS |
| GCAACTAAATCAGTCTGCAT+TGG | 0.556935 | 4_2:-7791819 | None:intergenic |
| GATGATAGATGTGGTTCAGA+TGG | 0.559177 | 4_2:+7791762 | Msa0586550:CDS |
| CAGATGAATCATCTAGGGAA+AGG | 0.559379 | 4_2:+7791481 | Msa0586550:CDS |
| TGATGTGGTTTGGATAATGC+TGG | 0.560096 | 4_2:-7791548 | None:intergenic |
| TTCGGCAGATGAATCATCTA+GGG | 0.560292 | 4_2:+7791476 | Msa0586550:CDS |
| TTTATCAGTTTCGAAACCAA+AGG | 0.562819 | 4_2:+7793222 | Msa0586550:CDS |
| GATCGGGCCATAGCTTAGAC+AGG | 0.565642 | 4_2:+7791934 | Msa0586550:CDS |
| GAAAGTAAACACAGGCCAGA+TGG | 0.570539 | 4_2:+7791300 | Msa0586550:CDS |
| GGTCTAGGAGAAGTAGGAGC+CGG | 0.573061 | 4_2:+7791115 | Msa0586550:CDS |
| GCATTTATTATGCAAAGGGA+AGG | 0.573665 | 4_2:+7791391 | Msa0586550:CDS |
| TCATGGGGATTAGAATATCT+GGG | 0.574011 | 4_2:-7791324 | None:intergenic |
| TCAAGGTGAAGATCAGGTGT+TGG | 0.575506 | 4_2:+7791692 | Msa0586550:CDS |
| GTGCATCATGACAATTCTGA+TGG | 0.575886 | 4_2:+7791441 | Msa0586550:CDS |
| GCCCTAGATTAAGGGATGAT+GGG | 0.578026 | 4_2:+7791658 | Msa0586550:CDS |
| AGTAACTGGTACAGTACAGC+GGG | 0.578110 | 4_2:+7793162 | Msa0586550:CDS |
| GCTGTTGGGAACTGCAGAAG+AGG | 0.580264 | 4_2:+7791225 | Msa0586550:CDS |
| CCAACAGCAAAATCTCTACA+AGG | 0.582187 | 4_2:-7791210 | None:intergenic |
| TACTAGGAGAAAAGGTTGGA+GGG | 0.584072 | 4_2:-7792802 | None:intergenic |
| TACCTGTTTGATGCAATTGA+GGG | 0.584950 | 4_2:+7794784 | Msa0586550:three_prime_UTR |
| GGCTCCATACTGTCAAACAT+TGG | 0.585746 | 4_2:-7792755 | None:intergenic |
| GATAGGAACAGAACGAGGGA+TGG | 0.586418 | 4_2:+7791174 | Msa0586550:CDS |
| ATTCTCATTTCCCAGTCAGT+AGG | 0.589106 | 4_2:+7792038 | Msa0586550:CDS |
| ATGTGGTTCAGATGGCAGAA+TGG | 0.591695 | 4_2:+7791770 | Msa0586550:CDS |
| TATTCTAATCCCCATGAGAG+TGG | 0.592838 | 4_2:+7791330 | Msa0586550:CDS |
| TCCGAGGATATGTGCGAGAG+AGG | 0.592954 | 4_2:-7792582 | None:intergenic |
| GATGGGTCGAGGAGTAATCA+AGG | 0.592990 | 4_2:+7791675 | Msa0586550:CDS |
| GCAAAGTTATGAGGATAGCA+GGG | 0.598476 | 4_2:+7791278 | Msa0586550:CDS |
| GGAGACATCTGTTCATCACC+AGG | 0.599211 | 4_2:-7792074 | None:intergenic |
| AGAGTAGCCTTTGCATCACA+GGG | 0.602543 | 4_2:-7792644 | None:intergenic |
| TCTAAAGCCCTGTGATGCAA+AGG | 0.604733 | 4_2:+7792637 | Msa0586550:CDS |
| ATCCCAAACTTTATCTACAT+CGG | 0.604953 | 4_2:-7791793 | None:intergenic |
| ATTTCCCAGTCAGTAGGTGG+AGG | 0.605746 | 4_2:+7792044 | Msa0586550:CDS |
| GTTGTATAAATATAAACTCA+GGG | 0.607394 | 4_2:+7794659 | Msa0586550:three_prime_UTR |
| TCTTCGGAAGCAAAATTGAA+GGG | 0.610203 | 4_2:+7792666 | Msa0586550:CDS |
| CAAGCATAAATAAATACGCA+AGG | 0.612663 | 4_2:-7794561 | None:intergenic |
| GAATAGTCCTATGGGAGACA+TGG | 0.612755 | 4_2:+7792970 | Msa0586550:CDS |
| TGCAAGGAGTGTTACTGATG+TGG | 0.613717 | 4_2:-7791563 | None:intergenic |
| CATGAATATTAGTGCAAATG+GGG | 0.616718 | 4_2:+7792778 | Msa0586550:CDS |
| GTATGTGGAAAAGGTTCAGA+AGG | 0.617543 | 4_2:+7794464 | Msa0586550:CDS |
| GATTAAGGGATGATGGGTCG+AGG | 0.618439 | 4_2:+7791664 | Msa0586550:CDS |
| ATTCAGTTGCTCCTAATGGA+AGG | 0.620566 | 4_2:+7791733 | Msa0586550:CDS |
| TTCTAATCCCCATGAGAGTG+GGG | 0.622227 | 4_2:+7791332 | Msa0586550:CDS |
| GAATAACTAAAACCATGTGG+AGG | 0.622897 | 4_2:-7791141 | None:intergenic |
| TCGATGATAGGAACAGAACG+AGG | 0.623889 | 4_2:+7791169 | Msa0586550:CDS |
| TCAATAATTCTTGCTCCTGG+GGG | 0.624254 | 4_2:-7792407 | None:intergenic |
| AGGAGATTCTGAAACCAACA+TGG | 0.625902 | 4_2:+7793080 | Msa0586550:CDS |
| TGCAAATTATACATCATCTG+AGG | 0.627662 | 4_2:-7794622 | None:intergenic |
| GCTCCTACTTCTCCTAGACC+TGG | 0.631906 | 4_2:-7791112 | None:intergenic |
| AGCCATGAATCCAGGTTCTG+GGG | 0.632591 | 4_2:-7791895 | None:intergenic |
| GGACATACTCCAACTCAGAA+CGG | 0.635435 | 4_2:+7792518 | Msa0586550:CDS |
| ATGGCTTGGCCAATGAACGA+TGG | 0.638310 | 4_2:+7791912 | Msa0586550:CDS |
| GATGTAGATAAAGTTTGGGA+TGG | 0.639080 | 4_2:+7791795 | Msa0586550:CDS |
| ATAAGAAGGAAGCCAACTGT+AGG | 0.639391 | 4_2:+7791991 | Msa0586550:CDS |
| CCACCACTATTATCTAACCT+AGG | 0.640445 | 4_2:+7792854 | Msa0586550:CDS |
| AATAACTAAAACCATGTGGA+GGG | 0.640970 | 4_2:-7791140 | None:intergenic |
| GAAGGAAGCCAACTGTAGGA+CGG | 0.641559 | 4_2:+7791995 | Msa0586550:CDS |
| CCAAAATGATGGACCTGATG+AGG | 0.644316 | 4_2:+7792994 | Msa0586550:CDS |
| TGCATCATGACAATTCTGAT+GGG | 0.655307 | 4_2:+7791442 | Msa0586550:CDS |
| AGAAAACAAAGGACGCGAAG+GGG | 0.656474 | 4_2:+7793020 | Msa0586550:CDS |
| CCTAGGTTAGATAATAGTGG+TGG | 0.658942 | 4_2:-7792854 | None:intergenic |
| TATGTGCGAGAGAGGCTGAG+AGG | 0.660778 | 4_2:-7792574 | None:intergenic |
| GAATAATCCCCACTCTCATG+GGG | 0.662424 | 4_2:-7791339 | None:intergenic |
| CATGGTGAAGAAAATGACAA+TGG | 0.665590 | 4_2:-7791251 | None:intergenic |
| GGAGCTGCTGACCAGTTCCG+AGG | 0.666304 | 4_2:-7792598 | None:intergenic |
| AGGCTAAGAGATGATAGATG+TGG | 0.672795 | 4_2:+7791753 | Msa0586550:CDS |
| AGGAGCCGGAGCCCTCCACA+TGG | 0.676758 | 4_2:+7791129 | Msa0586550:CDS |
| GCTGAATAACTAAAACCATG+TGG | 0.683862 | 4_2:-7791144 | None:intergenic |
| ATAGAGCAATCATTCAAGCA+GGG | 0.687583 | 4_2:+7791522 | Msa0586550:CDS |
| TGATGAGGCCAAGAAAACAA+AGG | 0.690243 | 4_2:+7793009 | Msa0586550:CDS |
| ATAGCAGGGAAAGTAAACAC+AGG | 0.696445 | 4_2:+7791292 | Msa0586550:CDS |
| CGATGATAGGAACAGAACGA+GGG | 0.705763 | 4_2:+7791170 | Msa0586550:CDS |
| AAGTAACTGGTACAGTACAG+CGG | 0.725762 | 4_2:+7793161 | Msa0586550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTTAATTTAATAACAA+TGG | - | chr4_2:7792261-7792280 | None:intergenic | 10.0% |
| !! | ATATTTAAGAATAATTATAC+TGG | - | chr4_2:7793924-7793943 | None:intergenic | 10.0% |
| !!! | AATTGTTTTATAATCTTCTT+TGG | - | chr4_2:7793122-7793141 | None:intergenic | 15.0% |
| !!! | GTAATTTTTCAAAAAAACTA+GGG | - | chr4_2:7793560-7793579 | None:intergenic | 15.0% |
| !!! | TGTAATTTTTCAAAAAAACT+AGG | - | chr4_2:7793561-7793580 | None:intergenic | 15.0% |
| !! | TCAGTAATAAAATAATTACC+TGG | - | chr4_2:7792173-7792192 | None:intergenic | 20.0% |
| !!! | TTTTTTGGAATCTTTATACT+AGG | - | chr4_2:7792821-7792840 | None:intergenic | 20.0% |
| !!! | TTTTGATGATTCTCTTAAAA+AGG | + | chr4_2:7792883-7792902 | Msa0586550:CDS | 20.0% |
| !! | TTATAAAACAATTGTGAAGA+AGG | + | chr4_2:7793129-7793148 | Msa0586550:CDS | 20.0% |
| !! | TCTATAAAACCAAGTTAAAT+GGG | - | chr4_2:7793325-7793344 | None:intergenic | 20.0% |
| !! | ATCTATAAAACCAAGTTAAA+TGG | - | chr4_2:7793326-7793345 | None:intergenic | 20.0% |
| !!! | TCAGAAATCATTAATTTTTC+TGG | + | chr4_2:7793370-7793389 | Msa0586550:intron | 20.0% |
| !!! | CAGAAATCATTAATTTTTCT+GGG | + | chr4_2:7793371-7793390 | Msa0586550:intron | 20.0% |
| !!! | AGAAATCATTAATTTTTCTG+GGG | + | chr4_2:7793372-7793391 | Msa0586550:intron | 20.0% |
| !! | ATTTCTCCTATTTAAATGAA+CGG | + | chr4_2:7793630-7793649 | Msa0586550:intron | 20.0% |
| !!! | ATGGATCATTTTAAACTTTT+TGG | - | chr4_2:7793798-7793817 | None:intergenic | 20.0% |
| !! | TAAAAAAGTGACTTAAGAAA+AGG | - | chr4_2:7793986-7794005 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTGCGAAAAAAT+AGG | - | chr4_2:7794055-7794074 | None:intergenic | 20.0% |
| !! | TGTTGTATAAATATAAACTC+AGG | + | chr4_2:7794658-7794677 | Msa0586550:three_prime_UTR | 20.0% |
| !! | GTTGTATAAATATAAACTCA+GGG | + | chr4_2:7794659-7794678 | Msa0586550:three_prime_UTR | 20.0% |
| !!! | TGATGGGTTTGATAAAATTT+CGG | + | chr4_2:7791458-7791477 | Msa0586550:CDS | 25.0% |
| !!! | CTTGCAAATTTTTTGCTTTT+GGG | + | chr4_2:7791580-7791599 | Msa0586550:CDS | 25.0% |
| !! | ACCATTTTCAATTGATAAGA+AGG | + | chr4_2:7791977-7791996 | Msa0586550:CDS | 25.0% |
| ! | TCCTTCTTATCAATTGAAAA+TGG | - | chr4_2:7791981-7792000 | None:intergenic | 25.0% |
| ! | TCAAAAGGGTAGAAAAATTA+AGG | - | chr4_2:7792304-7792323 | None:intergenic | 25.0% |
| ! | AATCTTTATACTAGGAGAAA+AGG | - | chr4_2:7792813-7792832 | None:intergenic | 25.0% |
| !! | AATCATCAAAATTTTGTCCT+AGG | - | chr4_2:7792874-7792893 | None:intergenic | 25.0% |
| !! | TTATTTTCAGATTGAGAGAT+TGG | - | chr4_2:7792938-7792957 | None:intergenic | 25.0% |
| !!! | TGTATAAGTTTGTTAACCTT+TGG | - | chr4_2:7793241-7793260 | None:intergenic | 25.0% |
| ! | AAAGGTTAACAAACTTATAC+AGG | + | chr4_2:7793240-7793259 | Msa0586550:CDS | 25.0% |
| !! | GAAATCATTAATTTTTCTGG+GGG | + | chr4_2:7793373-7793392 | Msa0586550:intron | 25.0% |
| !! | AAATCATTAATTTTTCTGGG+GGG | + | chr4_2:7793374-7793393 | Msa0586550:intron | 25.0% |
| ! | TTTGAACCGTTCATTTAAAT+AGG | - | chr4_2:7793639-7793658 | None:intergenic | 25.0% |
| !! | CAAATTAATTCTTTCTAGAG+TGG | + | chr4_2:7793655-7793674 | Msa0586550:intron | 25.0% |
| !!! | AGTGATTTTAATGGTTGAAA+GGG | + | chr4_2:7793695-7793714 | Msa0586550:intron | 25.0% |
| ! | AAAGAGATAAGAAAAATTCC+CGG | - | chr4_2:7793759-7793778 | None:intergenic | 25.0% |
| !!! | GTTATTTTTAAGGCTCTATT+TGG | - | chr4_2:7793834-7793853 | None:intergenic | 25.0% |
| !!! | CAATTGCTTGGTTATTTTTA+AGG | - | chr4_2:7793844-7793863 | None:intergenic | 25.0% |
| ! | TAAAAATAACCAAGCAATTG+AGG | + | chr4_2:7793844-7793863 | Msa0586550:intron | 25.0% |
| !!! | TAATAGTTTGTTTCTTGACT+TGG | - | chr4_2:7794158-7794177 | None:intergenic | 25.0% |
| ! | ACCAGTTGAAATAATATGAT+GGG | - | chr4_2:7794246-7794265 | None:intergenic | 25.0% |
| ! | AACCAGTTGAAATAATATGA+TGG | - | chr4_2:7794247-7794266 | None:intergenic | 25.0% |
| ! | TAGTTTACAAACCAAACATT+AGG | + | chr4_2:7794743-7794762 | Msa0586550:three_prime_UTR | 25.0% |
| AATAACTAAAACCATGTGGA+GGG | - | chr4_2:7791143-7791162 | None:intergenic | 30.0% | |
| AGCTTGCATTTATTATGCAA+AGG | + | chr4_2:7791386-7791405 | Msa0586550:CDS | 30.0% | |
| GCTTGCATTTATTATGCAAA+GGG | + | chr4_2:7791387-7791406 | Msa0586550:CDS | 30.0% | |
| CCAAAAGCAAAAAATTTGCA+AGG | - | chr4_2:7791582-7791601 | None:intergenic | 30.0% | |
| !!! | CCTTGCAAATTTTTTGCTTT+TGG | + | chr4_2:7791579-7791598 | Msa0586550:CDS | 30.0% |
| !! | TTTTTGCTTTTGGGAATTGT+CGG | + | chr4_2:7791589-7791608 | Msa0586550:CDS | 30.0% |
| ! | ATTGTAGGTTTTCTCATGAT+AGG | + | chr4_2:7791622-7791641 | Msa0586550:CDS | 30.0% |
| ATCCCAAACTTTATCTACAT+CGG | - | chr4_2:7791796-7791815 | None:intergenic | 30.0% | |
| GACAACAAAAATGGAATCAT+AGG | + | chr4_2:7791870-7791889 | Msa0586550:CDS | 30.0% | |
| ATGCTCATCTTTAATATGAC+TGG | - | chr4_2:7792126-7792145 | None:intergenic | 30.0% | |
| ! | AATTTTTCTACCCTTTTGAC+AGG | + | chr4_2:7792305-7792324 | Msa0586550:intron | 30.0% |
| ! | TTTTCTCAGTTGAAAGTTTC+TGG | - | chr4_2:7792445-7792464 | None:intergenic | 30.0% |
| TTAGAGTAGAATGAACTTGT+GGG | - | chr4_2:7792622-7792641 | None:intergenic | 30.0% | |
| ! | TTTAGAGTAGAATGAACTTG+TGG | - | chr4_2:7792623-7792642 | None:intergenic | 30.0% |
| TTGATGAATGTCATAGAAAC+AGG | - | chr4_2:7792701-7792720 | None:intergenic | 30.0% | |
| CCATTTGCACTAATATTCAT+GGG | - | chr4_2:7792779-7792798 | None:intergenic | 30.0% | |
| CCATGAATATTAGTGCAAAT+GGG | + | chr4_2:7792777-7792796 | Msa0586550:CDS | 30.0% | |
| CATGAATATTAGTGCAAATG+GGG | + | chr4_2:7792778-7792797 | Msa0586550:CDS | 30.0% | |
| TTTATACTAGGAGAAAAGGT+TGG | - | chr4_2:7792809-7792828 | None:intergenic | 30.0% | |
| AAAGATTCCAAAAAATGCAG+TGG | + | chr4_2:7792826-7792845 | Msa0586550:CDS | 30.0% | |
| TAAAAAGGAGACTAACGAAA+CGG | + | chr4_2:7792898-7792917 | Msa0586550:CDS | 30.0% | |
| TCGTGCATTTAAATCTTCAT+TGG | + | chr4_2:7793045-7793064 | Msa0586550:CDS | 30.0% | |
| TTCATTGGTAGAGCTTATTA+AGG | + | chr4_2:7793060-7793079 | Msa0586550:CDS | 30.0% | |
| ! | ATTTTACCATCTTTCCATGT+TGG | - | chr4_2:7793097-7793116 | None:intergenic | 30.0% |
| AAGGTTACTGATAAAGTAAC+TGG | + | chr4_2:7793148-7793167 | Msa0586550:CDS | 30.0% | |
| TTTATCAGTTTCGAAACCAA+AGG | + | chr4_2:7793222-7793241 | Msa0586550:CDS | 30.0% | |
| ATTTCCGTCATATGTATGAA+GGG | + | chr4_2:7793284-7793303 | Msa0586550:intron | 30.0% | |
| AGGATAGTTGTCAAAAAATG+AGG | + | chr4_2:7793422-7793441 | Msa0586550:intron | 30.0% | |
| ! | TGAGGTTAAATTTTGTACCT+AGG | + | chr4_2:7793440-7793459 | Msa0586550:intron | 30.0% |
| ATATATACATTGATCTCCCA+TGG | + | chr4_2:7793511-7793530 | Msa0586550:intron | 30.0% | |
| TATATACATTGATCTCCCAT+GGG | + | chr4_2:7793512-7793531 | Msa0586550:intron | 30.0% | |
| AAAGAACAGTGATGAGAATT+TGG | - | chr4_2:7793588-7793607 | None:intergenic | 30.0% | |
| !! | TTAATTCTTTCTAGAGTGGT+TGG | + | chr4_2:7793659-7793678 | Msa0586550:intron | 30.0% |
| !! | GAGTGATTTTAATGGTTGAA+AGG | + | chr4_2:7793694-7793713 | Msa0586550:intron | 30.0% |
| !! | GTGATTTTAATGGTTGAAAG+GGG | + | chr4_2:7793696-7793715 | Msa0586550:intron | 30.0% |
| TGTAAATAATGTGAACCTCA+AGG | + | chr4_2:7793894-7793913 | Msa0586550:intron | 30.0% | |
| !!! | AAAGATGTCCTTGTTTTCAT+AGG | + | chr4_2:7794094-7794113 | Msa0586550:intron | 30.0% |
| !!! | AAGATGTCCTTGTTTTCATA+GGG | + | chr4_2:7794095-7794114 | Msa0586550:intron | 30.0% |
| AAACAAACTATTAGCTCACT+AGG | + | chr4_2:7794165-7794184 | Msa0586550:intron | 30.0% | |
| ACCCATCATATTATTTCAAC+TGG | + | chr4_2:7794242-7794261 | Msa0586550:intron | 30.0% | |
| ! | ACTTTATTCTCTTTTTGTGC+AGG | + | chr4_2:7794440-7794459 | Msa0586550:intron | 30.0% |
| CAAGCATAAATAAATACGCA+AGG | - | chr4_2:7794564-7794583 | None:intergenic | 30.0% | |
| TGCAAATTATACATCATCTG+AGG | - | chr4_2:7794625-7794644 | None:intergenic | 30.0% | |
| AATAACAGTTGCCTAATGTT+TGG | - | chr4_2:7794757-7794776 | None:intergenic | 30.0% | |
| GAATAACTAAAACCATGTGG+AGG | - | chr4_2:7791144-7791163 | None:intergenic | 35.0% | |
| GCTGAATAACTAAAACCATG+TGG | - | chr4_2:7791147-7791166 | None:intergenic | 35.0% | |
| !!! | CTTGTAGAGATTTTGCTGTT+GGG | + | chr4_2:7791211-7791230 | Msa0586550:CDS | 35.0% |
| CATGGTGAAGAAAATGACAA+TGG | - | chr4_2:7791254-7791273 | None:intergenic | 35.0% | |
| CCTCATAACTTTGCTTATCA+TGG | - | chr4_2:7791272-7791291 | None:intergenic | 35.0% | |
| CCATGATAAGCAAAGTTATG+AGG | + | chr4_2:7791269-7791288 | Msa0586550:CDS | 35.0% | |
| TCATGGGGATTAGAATATCT+GGG | - | chr4_2:7791327-7791346 | None:intergenic | 35.0% | |
| GCATTTATTATGCAAAGGGA+AGG | + | chr4_2:7791391-7791410 | Msa0586550:CDS | 35.0% | |
| TGCATCATGACAATTCTGAT+GGG | + | chr4_2:7791442-7791461 | Msa0586550:CDS | 35.0% | |
| AGATGAATCATCTAGGGAAA+GGG | + | chr4_2:7791482-7791501 | Msa0586550:CDS | 35.0% | |
| ATAGAGCAATCATTCAAGCA+GGG | + | chr4_2:7791522-7791541 | Msa0586550:CDS | 35.0% | |
| ATTTACCAGCCCTAGATTAA+GGG | + | chr4_2:7791650-7791669 | Msa0586550:CDS | 35.0% | |
| GATGTAGATAAAGTTTGGGA+TGG | + | chr4_2:7791795-7791814 | Msa0586550:CDS | 35.0% | |
| CTCAACCAAATTTACTGTAC+CGG | - | chr4_2:7791850-7791869 | None:intergenic | 35.0% | |
| TTGGTTGAGGACAACAAAAA+TGG | + | chr4_2:7791861-7791880 | Msa0586550:CDS | 35.0% | |
| ATGTCTCCTGATTGGAATTA+TGG | + | chr4_2:7792089-7792108 | Msa0586550:CDS | 35.0% | |
| GAATATAACTGCTTCCCATT+TGG | + | chr4_2:7792352-7792371 | Msa0586550:CDS | 35.0% | |
| TTGACTTTGTCCAACCAAAT+GGG | - | chr4_2:7792369-7792388 | None:intergenic | 35.0% | |
| TTCAATAATTCTTGCTCCTG+GGG | - | chr4_2:7792411-7792430 | None:intergenic | 35.0% | |
| CTTCAATAATTCTTGCTCCT+GGG | - | chr4_2:7792412-7792431 | None:intergenic | 35.0% | |
| AATGCAAGCCTATCACAAAT+CGG | + | chr4_2:7792491-7792510 | Msa0586550:CDS | 35.0% | |
| TCTTCGGAAGCAAAATTGAA+GGG | + | chr4_2:7792666-7792685 | Msa0586550:CDS | 35.0% | |
| TACTGTTTCAATCCAATAGC+AGG | - | chr4_2:7792731-7792750 | None:intergenic | 35.0% | |
| TGATCCAATGTTTGACAGTA+TGG | + | chr4_2:7792751-7792770 | Msa0586550:CDS | 35.0% | |
| CCCATGAATATTAGTGCAAA+TGG | + | chr4_2:7792776-7792795 | Msa0586550:CDS | 35.0% | |
| CCCATTTGCACTAATATTCA+TGG | - | chr4_2:7792780-7792799 | None:intergenic | 35.0% | |
| !!! | GGAATTTCCACTGCATTTTT+TGG | - | chr4_2:7792836-7792855 | None:intergenic | 35.0% |
| TGTCCTAGGTTAGATAATAG+TGG | - | chr4_2:7792860-7792879 | None:intergenic | 35.0% | |
| TACAGAAGAGAATAGTCCTA+TGG | + | chr4_2:7792961-7792980 | Msa0586550:CDS | 35.0% | |
| ACAGAAGAGAATAGTCCTAT+GGG | + | chr4_2:7792962-7792981 | Msa0586550:CDS | 35.0% | |
| AACAAACTTATACAGGTCAG+TGG | + | chr4_2:7793247-7793266 | Msa0586550:intron | 35.0% | |
| GATTTCCGTCATATGTATGA+AGG | + | chr4_2:7793283-7793302 | Msa0586550:intron | 35.0% | |
| TGAACCCTTCATACATATGA+CGG | - | chr4_2:7793291-7793310 | None:intergenic | 35.0% | |
| TTTGATGTGGAAAGAGTTGT+AGG | + | chr4_2:7793402-7793421 | Msa0586550:intron | 35.0% | |
| ATAGCACAAATTGAACACCT+AGG | - | chr4_2:7793460-7793479 | None:intergenic | 35.0% | |
| ATATACATTGATCTCCCATG+GGG | + | chr4_2:7793513-7793532 | Msa0586550:intron | 35.0% | |
| ATAATTAGCGTAAACCCCAT+GGG | - | chr4_2:7793530-7793549 | None:intergenic | 35.0% | |
| TATAATTAGCGTAAACCCCA+TGG | - | chr4_2:7793531-7793550 | None:intergenic | 35.0% | |
| AACAGTGATGAGAATTTGGT+AGG | - | chr4_2:7793584-7793603 | None:intergenic | 35.0% | |
| ! | TACAAGGGGAGTGATTTTAA+TGG | + | chr4_2:7793686-7793705 | Msa0586550:intron | 35.0% |
| !! | ATTTTAATGGTTGAAAGGGG+AGG | + | chr4_2:7793699-7793718 | Msa0586550:intron | 35.0% |
| ! | TTTTAATGGTTGAAAGGGGA+GGG | + | chr4_2:7793700-7793719 | Msa0586550:intron | 35.0% |
| AATAACCAAGCAATTGAGGA+TGG | + | chr4_2:7793848-7793867 | Msa0586550:intron | 35.0% | |
| TTATACCATCCTCAATTGCT+TGG | - | chr4_2:7793856-7793875 | None:intergenic | 35.0% | |
| AATTATACTGGACTACCTTG+AGG | - | chr4_2:7793912-7793931 | None:intergenic | 35.0% | |
| AACCTTACCCTATGAAAACA+AGG | - | chr4_2:7794105-7794124 | None:intergenic | 35.0% | |
| ACTATTAGCTCACTAGGTTA+AGG | + | chr4_2:7794171-7794190 | Msa0586550:intron | 35.0% | |
| TCTACTTCTACCTTATGCAT+TGG | + | chr4_2:7794203-7794222 | Msa0586550:intron | 35.0% | |
| AAAAGATGGTCCAATGCATA+AGG | - | chr4_2:7794216-7794235 | None:intergenic | 35.0% | |
| !! | TGATGGGTTCAAGAAAAAGA+TGG | - | chr4_2:7794230-7794249 | None:intergenic | 35.0% |
| GTAATTGTAGATTCAGAAGC+TGG | - | chr4_2:7794348-7794367 | None:intergenic | 35.0% | |
| TTACCTGTTTGATGCAATTG+AGG | + | chr4_2:7794783-7794802 | Msa0586550:three_prime_UTR | 35.0% | |
| TACCTGTTTGATGCAATTGA+GGG | + | chr4_2:7794784-7794803 | Msa0586550:three_prime_UTR | 35.0% | |
| GTTATTCAGCTGTCGATGAT+AGG | + | chr4_2:7791157-7791176 | Msa0586550:CDS | 40.0% | |
| CCAACAGCAAAATCTCTACA+AGG | - | chr4_2:7791213-7791232 | None:intergenic | 40.0% | |
| !! | CCTTGTAGAGATTTTGCTGT+TGG | + | chr4_2:7791210-7791229 | Msa0586550:CDS | 40.0% |
| AGCAAAGTTATGAGGATAGC+AGG | + | chr4_2:7791277-7791296 | Msa0586550:CDS | 40.0% | |
| GCAAAGTTATGAGGATAGCA+GGG | + | chr4_2:7791278-7791297 | Msa0586550:CDS | 40.0% | |
| ATAGCAGGGAAAGTAAACAC+AGG | + | chr4_2:7791292-7791311 | Msa0586550:CDS | 40.0% | |
| TTAGAATATCTGGGTCCATC+TGG | - | chr4_2:7791318-7791337 | None:intergenic | 40.0% | |
| CTCATGGGGATTAGAATATC+TGG | - | chr4_2:7791328-7791347 | None:intergenic | 40.0% | |
| TATTCTAATCCCCATGAGAG+TGG | + | chr4_2:7791330-7791349 | Msa0586550:CDS | 40.0% | |
| ATTCTAATCCCCATGAGAGT+GGG | + | chr4_2:7791331-7791350 | Msa0586550:CDS | 40.0% | |
| AGAATAATCCCCACTCTCAT+GGG | - | chr4_2:7791343-7791362 | None:intergenic | 40.0% | |
| GTGCATCATGACAATTCTGA+TGG | + | chr4_2:7791441-7791460 | Msa0586550:CDS | 40.0% | |
| TTTCGGCAGATGAATCATCT+AGG | + | chr4_2:7791475-7791494 | Msa0586550:CDS | 40.0% | |
| TTCGGCAGATGAATCATCTA+GGG | + | chr4_2:7791476-7791495 | Msa0586550:CDS | 40.0% | |
| CAGATGAATCATCTAGGGAA+AGG | + | chr4_2:7791481-7791500 | Msa0586550:CDS | 40.0% | |
| GGGAAAGGGAAATTGATAGA+AGG | + | chr4_2:7791496-7791515 | Msa0586550:CDS | 40.0% | |
| CATAGAGCAATCATTCAAGC+AGG | + | chr4_2:7791521-7791540 | Msa0586550:CDS | 40.0% | |
| ! | TGATGTGGTTTGGATAATGC+TGG | - | chr4_2:7791551-7791570 | None:intergenic | 40.0% |
| GTCGGAATGGTAAAGATTGT+AGG | + | chr4_2:7791607-7791626 | Msa0586550:CDS | 40.0% | |
| CATTTACCAGCCCTAGATTA+AGG | + | chr4_2:7791649-7791668 | Msa0586550:CDS | 40.0% | |
| ACCCATCATCCCTTAATCTA+GGG | - | chr4_2:7791662-7791681 | None:intergenic | 40.0% | |
| GAGTAATCAAGGTGAAGATC+AGG | + | chr4_2:7791686-7791705 | Msa0586550:CDS | 40.0% | |
| ! | GCAACTGAATCGCTCAATTT+TGG | - | chr4_2:7791723-7791742 | None:intergenic | 40.0% |
| ATTCAGTTGCTCCTAATGGA+AGG | + | chr4_2:7791733-7791752 | Msa0586550:CDS | 40.0% | |
| ! | TCATCTCTTAGCCTTCCATT+AGG | - | chr4_2:7791747-7791766 | None:intergenic | 40.0% |
| AGGCTAAGAGATGATAGATG+TGG | + | chr4_2:7791753-7791772 | Msa0586550:CDS | 40.0% | |
| GATGATAGATGTGGTTCAGA+TGG | + | chr4_2:7791762-7791781 | Msa0586550:CDS | 40.0% | |
| TGGCCGATGTAGATAAAGTT+TGG | + | chr4_2:7791790-7791809 | Msa0586550:CDS | 40.0% | |
| GGCCGATGTAGATAAAGTTT+GGG | + | chr4_2:7791791-7791810 | Msa0586550:CDS | 40.0% | |
| GCAACTAAATCAGTCTGCAT+TGG | - | chr4_2:7791822-7791841 | None:intergenic | 40.0% | |
| ! | ACTGATTTAGTTGCTGTCTC+CGG | + | chr4_2:7791828-7791847 | Msa0586550:CDS | 40.0% |
| TGTCTCCGGTACAGTAAATT+TGG | + | chr4_2:7791842-7791861 | Msa0586550:CDS | 40.0% | |
| CGGTACAGTAAATTTGGTTG+AGG | + | chr4_2:7791848-7791867 | Msa0586550:CDS | 40.0% | |
| TTCTGTTCCTGTCTAAGCTA+TGG | - | chr4_2:7791944-7791963 | None:intergenic | 40.0% | |
| ATAAGAAGGAAGCCAACTGT+AGG | + | chr4_2:7791991-7792010 | Msa0586550:CDS | 40.0% | |
| ATTCTCATTTCCCAGTCAGT+AGG | + | chr4_2:7792038-7792057 | Msa0586550:CDS | 40.0% | |
| ATGAACAGATGTCTCCTGAT+TGG | + | chr4_2:7792081-7792100 | Msa0586550:CDS | 40.0% | |
| AAAACCATCTCATGTGCAAG+TGG | + | chr4_2:7792213-7792232 | Msa0586550:intron | 40.0% | |
| AAACCATCTCATGTGCAAGT+GGG | + | chr4_2:7792214-7792233 | Msa0586550:intron | 40.0% | |
| TAGTCCTTGTCCTGTCAAAA+GGG | - | chr4_2:7792318-7792337 | None:intergenic | 40.0% | |
| TTAGTCCTTGTCCTGTCAAA+AGG | - | chr4_2:7792319-7792338 | None:intergenic | 40.0% | |
| ATAACTGCTTCCCATTTGGT+TGG | + | chr4_2:7792356-7792375 | Msa0586550:CDS | 40.0% | |
| CTTGACTTTGTCCAACCAAA+TGG | - | chr4_2:7792370-7792389 | None:intergenic | 40.0% | |
| TCAATAATTCTTGCTCCTGG+GGG | - | chr4_2:7792410-7792429 | None:intergenic | 40.0% | |
| CCTTCAATAATTCTTGCTCC+TGG | - | chr4_2:7792413-7792432 | None:intergenic | 40.0% | |
| CCAGGAGCAAGAATTATTGA+AGG | + | chr4_2:7792410-7792429 | Msa0586550:CDS | 40.0% | |
| CTCTTCGGAAGCAAAATTGA+AGG | + | chr4_2:7792665-7792684 | Msa0586550:CDS | 40.0% | |
| TTCAATCCAATAGCAGGATC+TGG | - | chr4_2:7792725-7792744 | None:intergenic | 40.0% | |
| TACTAGGAGAAAAGGTTGGA+GGG | - | chr4_2:7792805-7792824 | None:intergenic | 40.0% | |
| ATACTAGGAGAAAAGGTTGG+AGG | - | chr4_2:7792806-7792825 | None:intergenic | 40.0% | |
| CCTAGGTTAGATAATAGTGG+TGG | - | chr4_2:7792857-7792876 | None:intergenic | 40.0% | |
| CCACCACTATTATCTAACCT+AGG | + | chr4_2:7792854-7792873 | Msa0586550:CDS | 40.0% | |
| !! | TTTGTTTTCTTGGCCTCATC+AGG | - | chr4_2:7793010-7793029 | None:intergenic | 40.0% |
| TGATGAGGCCAAGAAAACAA+AGG | + | chr4_2:7793009-7793028 | Msa0586550:CDS | 40.0% | |
| AAGAAAACAAAGGACGCGAA+GGG | + | chr4_2:7793019-7793038 | Msa0586550:CDS | 40.0% | |
| !! | AGGAGATTCTGAAACCAACA+TGG | + | chr4_2:7793080-7793099 | Msa0586550:CDS | 40.0% |
| CTGAAACCAACATGGAAAGA+TGG | + | chr4_2:7793088-7793107 | Msa0586550:CDS | 40.0% | |
| AAGTAACTGGTACAGTACAG+CGG | + | chr4_2:7793161-7793180 | Msa0586550:CDS | 40.0% | |
| ! | TCAATTTTCTCTCGTGTCTG+AGG | - | chr4_2:7793196-7793215 | None:intergenic | 40.0% |
| AAACTTATACAGGTCAGTGG+TGG | + | chr4_2:7793250-7793269 | Msa0586550:intron | 40.0% | |
| ATCTTGTCGCCCATTTAACT+TGG | + | chr4_2:7793313-7793332 | Msa0586550:intron | 40.0% | |
| ! | TAGAGTGGTTGGTTCATACA+AGG | + | chr4_2:7793670-7793689 | Msa0586550:intron | 40.0% |
| ! | AGAGTGGTTGGTTCATACAA+GGG | + | chr4_2:7793671-7793690 | Msa0586550:intron | 40.0% |
| AGAGGAGGAATTAAACTGTC+CGG | + | chr4_2:7793737-7793756 | Msa0586550:intron | 40.0% | |
| ATTTGGTTGAGAGGAAAGGA+TGG | - | chr4_2:7793817-7793836 | None:intergenic | 40.0% | |
| CTCTATTTGGTTGAGAGGAA+AGG | - | chr4_2:7793821-7793840 | None:intergenic | 40.0% | |
| TAAGGCTCTATTTGGTTGAG+AGG | - | chr4_2:7793826-7793845 | None:intergenic | 40.0% | |
| !!! | GTCCTTGTTTTCATAGGGTA+AGG | + | chr4_2:7794100-7794119 | Msa0586550:intron | 40.0% |
| AAGGTTGTTGCCTTGTCATT+TGG | + | chr4_2:7794119-7794138 | Msa0586550:intron | 40.0% | |
| CTCTTTGTCACCAAATGACA+AGG | - | chr4_2:7794132-7794151 | None:intergenic | 40.0% | |
| AATGCAGCAACACAAGAGAT+GGG | - | chr4_2:7794296-7794315 | None:intergenic | 40.0% | |
| GTATGTGGAAAAGGTTCAGA+AGG | + | chr4_2:7794464-7794483 | Msa0586550:CDS | 40.0% | |
| TTCCCTCAATTGCATCAAAC+AGG | - | chr4_2:7794789-7794808 | None:intergenic | 40.0% | |
| TCGATGATAGGAACAGAACG+AGG | + | chr4_2:7791169-7791188 | Msa0586550:CDS | 45.0% | |
| CGATGATAGGAACAGAACGA+GGG | + | chr4_2:7791170-7791189 | Msa0586550:CDS | 45.0% | |
| GAAAGTAAACACAGGCCAGA+TGG | + | chr4_2:7791300-7791319 | Msa0586550:CDS | 45.0% | |
| TTCTAATCCCCATGAGAGTG+GGG | + | chr4_2:7791332-7791351 | Msa0586550:CDS | 45.0% | |
| GAATAATCCCCACTCTCATG+GGG | - | chr4_2:7791342-7791361 | None:intergenic | 45.0% | |
| GAGAATAATCCCCACTCTCA+TGG | - | chr4_2:7791344-7791363 | None:intergenic | 45.0% | |
| ! | TGCAAAGGGAAGGTGTAGAA+TGG | + | chr4_2:7791401-7791420 | Msa0586550:CDS | 45.0% |
| ! | GCAAAGGGAAGGTGTAGAAT+GGG | + | chr4_2:7791402-7791421 | Msa0586550:CDS | 45.0% |
| ! | GGAGTGTTACTGATGTGGTT+TGG | - | chr4_2:7791561-7791580 | None:intergenic | 45.0% |
| !! | TGCAAGGAGTGTTACTGATG+TGG | - | chr4_2:7791566-7791585 | None:intergenic | 45.0% |
| !! | GCTTTTGGGAATTGTCGGAA+TGG | + | chr4_2:7791594-7791613 | Msa0586550:CDS | 45.0% |
| ! | ATCATCCCTTAATCTAGGGC+TGG | - | chr4_2:7791658-7791677 | None:intergenic | 45.0% |
| AGCCCTAGATTAAGGGATGA+TGG | + | chr4_2:7791657-7791676 | Msa0586550:CDS | 45.0% | |
| GCCCTAGATTAAGGGATGAT+GGG | + | chr4_2:7791658-7791677 | Msa0586550:CDS | 45.0% | |
| GACCCATCATCCCTTAATCT+AGG | - | chr4_2:7791663-7791682 | None:intergenic | 45.0% | |
| TCAAGGTGAAGATCAGGTGT+TGG | + | chr4_2:7791692-7791711 | Msa0586550:CDS | 45.0% | |
| AGCGATTCAGTTGCTCCTAA+TGG | + | chr4_2:7791729-7791748 | Msa0586550:CDS | 45.0% | |
| ATGTGGTTCAGATGGCAGAA+TGG | + | chr4_2:7791770-7791789 | Msa0586550:CDS | 45.0% | |
| AAGCCATGAATCCAGGTTCT+GGG | - | chr4_2:7791899-7791918 | None:intergenic | 45.0% | |
| TTGGCCAATGAACGATGGAT+CGG | + | chr4_2:7791917-7791936 | Msa0586550:CDS | 45.0% | |
| ! | ATTTTCTGCCGTCCTACAGT+TGG | - | chr4_2:7792006-7792025 | None:intergenic | 45.0% |
| CTCGCACCATAATTCCAATC+AGG | - | chr4_2:7792098-7792117 | None:intergenic | 45.0% | |
| TTTCCCACTTGCACATGAGA+TGG | - | chr4_2:7792220-7792239 | None:intergenic | 45.0% | |
| ATGTGCAAGTGGGAAAACAG+AGG | + | chr4_2:7792224-7792243 | Msa0586550:intron | 45.0% | |
| ! | TCTACCCTTTTGACAGGACA+AGG | + | chr4_2:7792311-7792330 | Msa0586550:intron | 45.0% |
| ! | AGCCTATCACAAATCGGTTC+TGG | + | chr4_2:7792497-7792516 | Msa0586550:CDS | 45.0% |
| !! | GTCCAGAACCGATTTGTGAT+AGG | - | chr4_2:7792502-7792521 | None:intergenic | 45.0% |
| GGACATACTCCAACTCAGAA+CGG | + | chr4_2:7792518-7792537 | Msa0586550:CDS | 45.0% | |
| ! | TCTAAAGCCCTGTGATGCAA+AGG | + | chr4_2:7792637-7792656 | Msa0586550:CDS | 45.0% |
| AGAGTAGCCTTTGCATCACA+GGG | - | chr4_2:7792647-7792666 | None:intergenic | 45.0% | |
| GATGCAAAGGCTACTCTCTT+CGG | + | chr4_2:7792650-7792669 | Msa0586550:CDS | 45.0% | |
| ATCAAGCCAGATCCTGCTAT+TGG | + | chr4_2:7792716-7792735 | Msa0586550:CDS | 45.0% | |
| GGCTCCATACTGTCAAACAT+TGG | - | chr4_2:7792758-7792777 | None:intergenic | 45.0% | |
| GAATAGTCCTATGGGAGACA+TGG | + | chr4_2:7792970-7792989 | Msa0586550:CDS | 45.0% | |
| ! | TTTTGGTCCATGTCTCCCAT+AGG | - | chr4_2:7792980-7792999 | None:intergenic | 45.0% |
| GGAGACATGGACCAAAATGA+TGG | + | chr4_2:7792983-7793002 | Msa0586550:CDS | 45.0% | |
| ! | CCTCATCAGGTCCATCATTT+TGG | - | chr4_2:7792997-7793016 | None:intergenic | 45.0% |
| !! | CCAAAATGATGGACCTGATG+AGG | + | chr4_2:7792994-7793013 | Msa0586550:CDS | 45.0% |
| !!! | CTTCGCGTCCTTTGTTTTCT+TGG | - | chr4_2:7793020-7793039 | None:intergenic | 45.0% |
| CAAGAAAACAAAGGACGCGA+AGG | + | chr4_2:7793018-7793037 | Msa0586550:CDS | 45.0% | |
| AGAAAACAAAGGACGCGAAG+GGG | + | chr4_2:7793020-7793039 | Msa0586550:CDS | 45.0% | |
| AGTAACTGGTACAGTACAGC+GGG | + | chr4_2:7793162-7793181 | Msa0586550:CDS | 45.0% | |
| ! | GAGTGGTTGGTTCATACAAG+GGG | + | chr4_2:7793672-7793691 | Msa0586550:intron | 45.0% |
| GAGGAGGAATTAAACTGTCC+GGG | + | chr4_2:7793738-7793757 | Msa0586550:intron | 45.0% | |
| GAATGCAGCAACACAAGAGA+TGG | - | chr4_2:7794297-7794316 | None:intergenic | 45.0% | |
| ! | TCTTTTTGTGCAGGCGTATG+TGG | + | chr4_2:7794449-7794468 | Msa0586550:intron | 45.0% |
| TTGCCAGGTCTAGGAGAAGT+AGG | + | chr4_2:7791109-7791128 | Msa0586550:CDS | 50.0% | |
| TAAAACCATGTGGAGGGCTC+CGG | - | chr4_2:7791137-7791156 | None:intergenic | 50.0% | |
| GATAGGAACAGAACGAGGGA+TGG | + | chr4_2:7791174-7791193 | Msa0586550:CDS | 50.0% | |
| !! | GATTAAGGGATGATGGGTCG+AGG | + | chr4_2:7791664-7791683 | Msa0586550:CDS | 50.0% |
| GATGGGTCGAGGAGTAATCA+AGG | + | chr4_2:7791675-7791694 | Msa0586550:CDS | 50.0% | |
| AGCCATGAATCCAGGTTCTG+GGG | - | chr4_2:7791898-7791917 | None:intergenic | 50.0% | |
| CAAGCCATGAATCCAGGTTC+TGG | - | chr4_2:7791900-7791919 | None:intergenic | 50.0% | |
| CAGAACCTGGATTCATGGCT+TGG | + | chr4_2:7791898-7791917 | Msa0586550:CDS | 50.0% | |
| ATTGGCCAAGCCATGAATCC+AGG | - | chr4_2:7791906-7791925 | None:intergenic | 50.0% | |
| ! | ATGGCTTGGCCAATGAACGA+TGG | + | chr4_2:7791912-7791931 | Msa0586550:CDS | 50.0% |
| TGGCCAATGAACGATGGATC+GGG | + | chr4_2:7791918-7791937 | Msa0586550:CDS | 50.0% | |
| GAAGGAAGCCAACTGTAGGA+CGG | + | chr4_2:7791995-7792014 | Msa0586550:CDS | 50.0% | |
| CTCATTTCCCAGTCAGTAGG+TGG | + | chr4_2:7792041-7792060 | Msa0586550:CDS | 50.0% | |
| ATTTCCCAGTCAGTAGGTGG+AGG | + | chr4_2:7792044-7792063 | Msa0586550:CDS | 50.0% | |
| GGAGACATCTGTTCATCACC+AGG | - | chr4_2:7792077-7792096 | None:intergenic | 50.0% | |
| AGTAAGCAGCAAGTTGCTCC+AGG | + | chr4_2:7792152-7792171 | Msa0586550:CDS | 50.0% | |
| !! | TTGCTGACTCCGTTCTGAGT+TGG | - | chr4_2:7792530-7792549 | None:intergenic | 50.0% |
| GAGAGTAGCCTTTGCATCAC+AGG | - | chr4_2:7792648-7792667 | None:intergenic | 50.0% | |
| ! | CTGGGGGGCATAATTTGATG+TGG | + | chr4_2:7793389-7793408 | Msa0586550:intron | 50.0% |
| TAATGGTTGAAAGGGGAGGG+AGG | + | chr4_2:7793703-7793722 | Msa0586550:intron | 50.0% | |
| AGGGAGGAAGGGGAATAAAG+AGG | + | chr4_2:7793719-7793738 | Msa0586550:intron | 50.0% | |
| GAGGAAGGGGAATAAAGAGG+AGG | + | chr4_2:7793722-7793741 | Msa0586550:intron | 50.0% | |
| CAGCAACACAAGAGATGGGT+AGG | - | chr4_2:7794292-7794311 | None:intergenic | 50.0% | |
| TGTGCAGGCGTATGTGGAAA+AGG | + | chr4_2:7794455-7794474 | Msa0586550:intron | 50.0% | |
| GCTCCTACTTCTCCTAGACC+TGG | - | chr4_2:7791115-7791134 | None:intergenic | 55.0% | |
| GGTCTAGGAGAAGTAGGAGC+CGG | + | chr4_2:7791115-7791134 | Msa0586550:CDS | 55.0% | |
| GCTGTTGGGAACTGCAGAAG+AGG | + | chr4_2:7791225-7791244 | Msa0586550:CDS | 55.0% | |
| ATCATAGGCACCCCAGAACC+TGG | + | chr4_2:7791885-7791904 | Msa0586550:CDS | 55.0% | |
| CACCCCAGAACCTGGATTCA+TGG | + | chr4_2:7791893-7791912 | Msa0586550:CDS | 55.0% | |
| TGGCCCGATCCATCGTTCAT+TGG | - | chr4_2:7791924-7791943 | None:intergenic | 55.0% | |
| GATCGGGCCATAGCTTAGAC+AGG | + | chr4_2:7791934-7791953 | Msa0586550:CDS | 55.0% | |
| ! | CATGCCTCCACCTACTGACT+GGG | - | chr4_2:7792051-7792070 | None:intergenic | 55.0% |
| ACATGCCTCCACCTACTGAC+TGG | - | chr4_2:7792052-7792071 | None:intergenic | 55.0% | |
| ! | AGTCAGTAGGTGGAGGCATG+TGG | + | chr4_2:7792051-7792070 | Msa0586550:CDS | 55.0% |
| ACAGCTTCCATTGTTCCCCC+AGG | + | chr4_2:7792392-7792411 | Msa0586550:CDS | 55.0% | |
| TCTTGCTCCTGGGGGAACAA+TGG | - | chr4_2:7792402-7792421 | None:intergenic | 55.0% | |
| TATGTGCGAGAGAGGCTGAG+AGG | - | chr4_2:7792577-7792596 | None:intergenic | 55.0% | |
| GCCTCTCTCGCACATATCCT+CGG | + | chr4_2:7792581-7792600 | Msa0586550:CDS | 55.0% | |
| TCCGAGGATATGTGCGAGAG+AGG | - | chr4_2:7792585-7792604 | None:intergenic | 55.0% | |
| CTCGCACATATCCTCGGAAC+TGG | + | chr4_2:7792587-7792606 | Msa0586550:CDS | 55.0% | |
| GTTGAAAGGGGAGGGAGGAA+GGG | + | chr4_2:7793708-7793727 | Msa0586550:intron | 55.0% | |
| TTGAAAGGGGAGGGAGGAAG+GGG | + | chr4_2:7793709-7793728 | Msa0586550:intron | 55.0% | |
| GGTTGAAAGGGGAGGGAGGA+AGG | + | chr4_2:7793707-7793726 | Msa0586550:intron | 60.0% | |
| ! | GTAGGTGGAGGCATGTGGCC+TGG | + | chr4_2:7792056-7792075 | Msa0586550:CDS | 65.0% |
| GGAGCTGCTGACCAGTTCCG+AGG | - | chr4_2:7792601-7792620 | None:intergenic | 65.0% | |
| AGGAGCCGGAGCCCTCCACA+TGG | + | chr4_2:7791129-7791148 | Msa0586550:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 7791102 | 7794809 | 7791102 | ID=Msa0586550;Name=Msa0586550 |
| chr4_2 | mRNA | 7791102 | 7794809 | 7791102 | ID=Msa0586550-mRNA-1;Parent=Msa0586550;Name=Msa0586550-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.66|1|1|1|3|318|678 |
| chr4_2 | exon | 7791102 | 7792173 | 7791102 | ID=Msa0586550-mRNA-1:exon:2074;Parent=Msa0586550-mRNA-1 |
| chr4_2 | exon | 7792327 | 7793261 | 7792327 | ID=Msa0586550-mRNA-1:exon:2075;Parent=Msa0586550-mRNA-1 |
| chr4_2 | exon | 7794462 | 7794809 | 7794462 | ID=Msa0586550-mRNA-1:exon:2076;Parent=Msa0586550-mRNA-1 |
| chr4_2 | CDS | 7791102 | 7792173 | 7791102 | ID=Msa0586550-mRNA-1:cds;Parent=Msa0586550-mRNA-1 |
| chr4_2 | CDS | 7792327 | 7793261 | 7792327 | ID=Msa0586550-mRNA-1:cds;Parent=Msa0586550-mRNA-1 |
| chr4_2 | CDS | 7794462 | 7794491 | 7794462 | ID=Msa0586550-mRNA-1:cds;Parent=Msa0586550-mRNA-1 |
| chr4_2 | three_prime_UTR | 7794492 | 7794809 | 7794492 | ID=Msa0586550-mRNA-1:three_prime_utr;Parent=Msa0586550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
