AlfalfaGEDB | Msa0589370

M. sativa cultivar zhongmu-4 / Msa0589370

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF01388.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0589370	XP_012569925.1	47.020	302	91	6	22	274	12	293	6.60e-72	233

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0589370	TR	ARID

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0589370	MtrunA17_Chr1g0192841	57.500	160	33	2	149	274	74	232	5.56e-55	177
Msa0589370	MtrunA17_Chr5g0435401	40.678	236	99	5	30	224	40	275	5.02e-43	151
Msa0589370	MtrunA17_Chr5g0435401	47.887	142	62	5	139	274	266	401	4.23e-28	111
Msa0589370	MtrunA17_Chr5g0445971	54.015	137	40	4	23	154	20	138	2.81e-36	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 53 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTCGAGGTGCTCCAAC+GGG	0.488229	4_2:-12220795	Msa0589370:CDS
AAAGAAAAGAAGAAACGTCG+AGG	0.714322	4_2:-12220807	Msa0589370:CDS
AAAGATGAAGGAAACAAACA+AGG	0.649227	4_2:-12220505	Msa0589370:CDS
AACAACACAGAAACAATGGA+AGG	0.643932	4_2:-12221764	None:intergenic
AACGTTACCATAGGTGAGTT+TGG	0.366922	4_2:+12221703	None:intergenic
AACTGCTCTACAAAACAAAT+GGG	0.511058	4_2:-12221100	Msa0589370:CDS
AAGCCACGTTCGCGGCTGCG+TGG	0.573226	4_2:+12220382	None:intergenic
AATGGAAGGCAACAACACTA+CGG	0.577903	4_2:-12221750	Msa0589370:CDS
AATTTATCTTGAATGTTTCA+AGG	0.412239	4_2:-12221125	Msa0589370:CDS
ACAAAAGAGTAATTTGTTAG+AGG	0.335421	4_2:+12220408	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGCATGCATTCAAAATCA+AGG	-	chr4_2:12220518-12220537	Msa0589370:CDS	30.0%
TAACTGCTCTACAAAACAAA+TGG	-	chr4_2:12220968-12220987	Msa0589370:intron	30.0%
AACTGCTCTACAAAACAAAT+GGG	-	chr4_2:12220969-12220988	Msa0589370:intron	30.0%
TTTGAGAAATTGTACTTCTC+TGG	-	chr4_2:12221081-12221100	Msa0589370:CDS	30.0%
TTGGTATCTTAGATACCTTT+GGG	+	chr4_2:12221111-12221130	None:intergenic	30.0%
ATTGGTATCTTAGATACCTT+TGG	+	chr4_2:12221112-12221131	None:intergenic	30.0%
ATATCAAATATTCCTCAAGC+AGG	-	chr4_2:12221306-12221325	Msa0589370:CDS	30.0%
TTCGACATTTGATCGATATT+AGG	+	chr4_2:12221452-12221471	None:intergenic	30.0%
AAAGATGAAGGAAACAAACA+AGG	-	chr4_2:12221564-12221583	Msa0589370:intron	30.0%
TTTGCATGCATTCAAAATCA+AGG	-	chr4_2:12220518-12220537	Msa0589370:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	12220320	12221771	12220320	ID=Msa0589370;Name=Msa0589370
chr4_2	mRNA	12220320	12221771	12220320	ID=Msa0589370-mRNA-1;Parent=Msa0589370;Name=Msa0589370-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0\|0\|0\|0.8\|0.5\|0.8\|5\|0\|274
chr4_2	exon	12221617	12221771	12221617	ID=Msa0589370-mRNA-1:exon:3586;Parent=Msa0589370-mRNA-1
chr4_2	exon	12221290	12221381	12221290	ID=Msa0589370-mRNA-1:exon:3585;Parent=Msa0589370-mRNA-1
chr4_2	exon	12220977	12221153	12220977	ID=Msa0589370-mRNA-1:exon:3584;Parent=Msa0589370-mRNA-1
chr4_2	exon	12220662	12220834	12220662	ID=Msa0589370-mRNA-1:exon:3583;Parent=Msa0589370-mRNA-1
chr4_2	exon	12220320	12220547	12220320	ID=Msa0589370-mRNA-1:exon:3582;Parent=Msa0589370-mRNA-1
chr4_2	CDS	12221617	12221771	12221617	ID=Msa0589370-mRNA-1:cds;Parent=Msa0589370-mRNA-1
chr4_2	CDS	12221290	12221381	12221290	ID=Msa0589370-mRNA-1:cds;Parent=Msa0589370-mRNA-1
chr4_2	CDS	12220977	12221153	12220977	ID=Msa0589370-mRNA-1:cds;Parent=Msa0589370-mRNA-1
chr4_2	CDS	12220662	12220834	12220662	ID=Msa0589370-mRNA-1:cds;Parent=Msa0589370-mRNA-1
chr4_2	CDS	12220320	12220547	12220320	ID=Msa0589370-mRNA-1:cds;Parent=Msa0589370-mRNA-1

Gene Sequence

>Msa0589370

ATGGAAGGCAACAACACTACGGGTTCATCAACATCATCATCAGATGCCAAACTCACCTATGGTAACGTTGTGTCCAAGGGGAAACAATACTCTTCTCTTGATGACTTCTGTGTCAAACTCACTCAAGTGTTGGATTCCACTGGCTTCAATCTCATTTTCAATGTCCGAGAAACATCCTTAGACTTGTATCTGCTTTACTTGGAAGTCACCAGAAGAGGAGGTTTTCACCAGGTATTATTAATTTGTTTGTTCAAATTTATCTTGAATGTTTCAAGGTTAACTGCTCTACAAAACAAATGGGCTGAAATTGTCTCTGCACTGAAACTAGAAGGCAACAATGCAATGTTATCTGATCGACTTGAAATCCTCTATGCAATACTTCTATACAAATTTGAGAAATTGTACTTCTCTGGCACCCCCAAAGATGGCAAAGAAAAGAAGAAACGTCGAGGTGCTCCAACGGGAAATAGTGGATATCAAATATTCCTCAAGCAGGAATGTGCTCGATTAAAAGCTCATGTTCCGGACATAGTTGGTAAAAATGTCCTACGCATGGCTATTGATGCGTGGAATAAGATGTCTGTCATTGATAAACAGCCATATGTGGAGGAAAGCAAAAAGATGAAGGAAACAAACAAGGAAGCGAGGTTTATTAATGACAATAAACAGAAGAAGCCTTGTGTGTCCGGTGACTCTAATTGTGTAACTTCGCAACCTCTAACAAATTACTCTTTTGTCAACCACGCAGCCGCGAACGTGGCTTTTGAAATGACTGAAAAAACATTCAAGAATCCCTTTTTCCCGGTTGATTTCGATACTTACTGA

Protein sequence

>Msa0589370

MEGNNTTGSSTSSSDAKLTYGNVVSKGKQYSSLDDFCVKLTQVLDSTGFNLIFNVRETSLDLYLLYLEVTRRGGFHQVLLICLFKFILNVSRLTALQNKWAEIVSALKLEGNNAMLSDRLEILYAILLYKFEKLYFSGTPKDGKEKKKRRGAPTGNSGYQIFLKQECARLKAHVPDIVGKNVLRMAIDAWNKMSVIDKQPYVEESKKMKETNKEARFINDNKQKKPCVSGDSNCVTSQPLTNYSFVNHAAANVAFEMTEKTFKNPFFPVDFDTY*