Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0589370 | XP_012569925.1 | 47.020 | 302 | 91 | 6 | 22 | 274 | 12 | 293 | 6.60e-72 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0589370 | TR | ARID |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0589370 | MtrunA17_Chr1g0192841 | 57.500 | 160 | 33 | 2 | 149 | 274 | 74 | 232 | 5.56e-55 | 177 |
| Msa0589370 | MtrunA17_Chr5g0435401 | 40.678 | 236 | 99 | 5 | 30 | 224 | 40 | 275 | 5.02e-43 | 151 |
| Msa0589370 | MtrunA17_Chr5g0435401 | 47.887 | 142 | 62 | 5 | 139 | 274 | 266 | 401 | 4.23e-28 | 111 |
| Msa0589370 | MtrunA17_Chr5g0445971 | 54.015 | 137 | 40 | 4 | 23 | 154 | 20 | 138 | 2.81e-36 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGAAATCAACCGGGAAAA+AGG | 0.232668 | 4_2:+12220329 | None:intergenic |
| ACAAAAGAGTAATTTGTTAG+AGG | 0.335421 | 4_2:+12220408 | None:intergenic |
| GATGTCTGTCATTGATAAAC+AGG | 0.358571 | 4_2:-12220661 | Msa0589370:intron |
| AACGTTACCATAGGTGAGTT+TGG | 0.366922 | 4_2:+12221703 | None:intergenic |
| TTTGAGAAATTGTACTTCTC+TGG | 0.372455 | 4_2:-12220988 | Msa0589370:CDS |
| GTAAAGCAGATACAAGTCTA+AGG | 0.401467 | 4_2:+12221339 | None:intergenic |
| TAACTGCTCTACAAAACAAA+TGG | 0.407082 | 4_2:-12221101 | Msa0589370:CDS |
| AATTTATCTTGAATGTTTCA+AGG | 0.412239 | 4_2:-12221125 | Msa0589370:CDS |
| CAGAAGAAGCCTTGTGTGTC+CGG | 0.418606 | 4_2:-12220456 | Msa0589370:CDS |
| CAGTAAGTATCGAAATCAAC+CGG | 0.431018 | 4_2:+12220321 | None:intergenic |
| GTCTCTGCACTGAAACTAGA+AGG | 0.436460 | 4_2:-12221069 | Msa0589370:CDS |
| CTGGTGAAAACCTCCTCTTC+TGG | 0.440306 | 4_2:+12221306 | None:intergenic |
| AGACTTGTATCTGCTTTACT+TGG | 0.470775 | 4_2:-12221335 | Msa0589370:CDS |
| TCGATTAAAAGCTCATGTTC+CGG | 0.480755 | 4_2:-12220733 | Msa0589370:CDS |
| GGTGCTCCAACGGGAAATAG+TGG | 0.487026 | 4_2:-12220786 | Msa0589370:CDS |
| AAACGTCGAGGTGCTCCAAC+GGG | 0.488229 | 4_2:-12220795 | Msa0589370:CDS |
| AGAAGAGTATTGTTTCCCCT+TGG | 0.498879 | 4_2:+12221676 | None:intergenic |
| AACTGCTCTACAAAACAAAT+GGG | 0.511058 | 4_2:-12221100 | Msa0589370:CDS |
| TGTATAGAAGTATTGCATAG+AGG | 0.512721 | 4_2:+12221013 | None:intergenic |
| CTATGGTAACGTTGTGTCCA+AGG | 0.513836 | 4_2:-12221693 | Msa0589370:CDS |
| ATCGAGCACATTCCTGCTTG+AGG | 0.522606 | 4_2:+12220751 | None:intergenic |
| ACTCAAGTGTTGGATTCCAC+TGG | 0.532584 | 4_2:-12221629 | Msa0589370:CDS |
| CATTTCAAAAGCCACGTTCG+CGG | 0.533360 | 4_2:+12220374 | None:intergenic |
| ACAAGTCTAAGGATGTTTCT+CGG | 0.546217 | 4_2:+12221350 | None:intergenic |
| GCTCATGTTCCGGACATAGT+TGG | 0.547344 | 4_2:-12220723 | Msa0589370:CDS |
| GAAACGTCGAGGTGCTCCAA+CGG | 0.547614 | 4_2:-12220796 | Msa0589370:CDS |
| TACTTGGAAGTCACCAGAAG+AGG | 0.547711 | 4_2:-12221319 | Msa0589370:CDS |
| TCAGATGCCAAACTCACCTA+TGG | 0.549356 | 4_2:-12221710 | Msa0589370:CDS |
| TGTCAAACTCACTCAAGTGT+TGG | 0.550448 | 4_2:-12221639 | Msa0589370:CDS |
| TATGGTAACGTTGTGTCCAA+GGG | 0.564205 | 4_2:-12221692 | Msa0589370:CDS |
| TGATATCCACTATTTCCCGT+TGG | 0.568557 | 4_2:+12220780 | None:intergenic |
| AAGCCACGTTCGCGGCTGCG+TGG | 0.573226 | 4_2:+12220382 | None:intergenic |
| AATGGAAGGCAACAACACTA+CGG | 0.577903 | 4_2:-12221750 | Msa0589370:CDS |
| ATGGAAGGCAACAACACTAC+GGG | 0.582274 | 4_2:-12221749 | Msa0589370:CDS |
| ATATCAAATATTCCTCAAGC+AGG | 0.584597 | 4_2:-12220763 | Msa0589370:CDS |
| CTTGGACACAACGTTACCAT+AGG | 0.590341 | 4_2:+12221694 | None:intergenic |
| TTGGAAGTCACCAGAAGAGG+AGG | 0.590853 | 4_2:-12221316 | Msa0589370:CDS |
| TACAACAAATTAATAATACC+TGG | 0.593092 | 4_2:+12221287 | None:intergenic |
| AGTTACACAATTAGAGTCAC+CGG | 0.593515 | 4_2:+12220437 | None:intergenic |
| TGGTATCTTAGATACCTTTG+GGG | 0.610563 | 4_2:+12220962 | None:intergenic |
| CAACCACGCAGCCGCGAACG+TGG | 0.612493 | 4_2:-12220385 | Msa0589370:CDS |
| GGTATCTTAGATACCTTTGG+GGG | 0.616615 | 4_2:+12220963 | None:intergenic |
| TTTCATGTAGCCATATGTGG+AGG | 0.619171 | 4_2:-12220535 | Msa0589370:intron |
| ACGCATCAATAGCCATGCGT+AGG | 0.637706 | 4_2:+12220691 | None:intergenic |
| TACGCATGGCTATTGATGCG+TGG | 0.638662 | 4_2:-12220689 | Msa0589370:CDS |
| AACAACACAGAAACAATGGA+AGG | 0.643932 | 4_2:-12221764 | None:intergenic |
| AAAGATGAAGGAAACAAACA+AGG | 0.649227 | 4_2:-12220505 | Msa0589370:CDS |
| TGACATGAGATTGAAGCCAG+TGG | 0.658000 | 4_2:+12221613 | None:intergenic |
| TTAGAGTCACCGGACACACA+AGG | 0.669714 | 4_2:+12220447 | None:intergenic |
| AGTAAGTATCGAAATCAACC+GGG | 0.679811 | 4_2:+12220322 | None:intergenic |
| ATGGTAACGTTGTGTCCAAG+GGG | 0.685604 | 4_2:-12221691 | Msa0589370:CDS |
| AGGAAACAAACAAGGAAGCG+AGG | 0.689047 | 4_2:-12220497 | Msa0589370:CDS |
| AAAGAAAAGAAGAAACGTCG+AGG | 0.714322 | 4_2:-12220807 | Msa0589370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAGAAGTAGATTAAA+GGG | + | chr4_2:12220494-12220513 | None:intergenic | 15.0% |
| !! | AAAATTAGAAGTAGATTAAA+GGG | + | chr4_2:12220494-12220513 | None:intergenic | 15.0% |
| !! | GAAAATTAGAAGTAGATTAA+AGG | + | chr4_2:12220495-12220514 | None:intergenic | 20.0% |
| !! | TACAACAAATTAATAATACC+TGG | + | chr4_2:12220785-12220804 | None:intergenic | 20.0% |
| !!! | AATGCATGTGTATATATTTT+AGG | - | chr4_2:12220829-12220848 | Msa0589370:intron | 20.0% |
| !! | AATTTATCTTGAATGTTTCA+AGG | - | chr4_2:12220944-12220963 | Msa0589370:intron | 20.0% |
| !! | CATGAAAAAGTAATTAGAAA+TGG | + | chr4_2:12221521-12221540 | None:intergenic | 20.0% |
| !! | GAAAATTAGAAGTAGATTAA+AGG | + | chr4_2:12220495-12220514 | None:intergenic | 20.0% |
| !! | TACAACAAATTAATAATACC+TGG | + | chr4_2:12220785-12220804 | None:intergenic | 20.0% |
| !!! | AATGCATGTGTATATATTTT+AGG | - | chr4_2:12220829-12220848 | Msa0589370:intron | 20.0% |
| !! | AATTTATCTTGAATGTTTCA+AGG | - | chr4_2:12220944-12220963 | Msa0589370:intron | 20.0% |
| !! | CATGAAAAAGTAATTAGAAA+TGG | + | chr4_2:12221521-12221540 | None:intergenic | 20.0% |
| ! | CACACAAATTTAATCAAGAA+AGG | - | chr4_2:12220881-12220900 | Msa0589370:intron | 25.0% |
| ! | GCATATAAATAACCACAAAT+TGG | + | chr4_2:12221130-12221149 | None:intergenic | 25.0% |
| ! | ATGCTTGATATAAAGATGTT+TGG | - | chr4_2:12221184-12221203 | Msa0589370:intron | 25.0% |
| ! | TTAATTTACAACTCATGATC+CGG | - | chr4_2:12221228-12221247 | Msa0589370:intron | 25.0% |
| !! | AATTTTGCAATTAACCTACT+TGG | - | chr4_2:12221480-12221499 | Msa0589370:intron | 25.0% |
| ! | AAATTTCAAACAAACCAAGT+AGG | + | chr4_2:12221497-12221516 | None:intergenic | 25.0% |
| !!! | ACAAAAGAGTAATTTGTTAG+AGG | + | chr4_2:12221664-12221683 | None:intergenic | 25.0% |
| ! | CACACAAATTTAATCAAGAA+AGG | - | chr4_2:12220881-12220900 | Msa0589370:intron | 25.0% |
| ! | GCATATAAATAACCACAAAT+TGG | + | chr4_2:12221130-12221149 | None:intergenic | 25.0% |
| ! | ATGCTTGATATAAAGATGTT+TGG | - | chr4_2:12221184-12221203 | Msa0589370:intron | 25.0% |
| ! | TTAATTTACAACTCATGATC+CGG | - | chr4_2:12221228-12221247 | Msa0589370:intron | 25.0% |
| !! | AATTTTGCAATTAACCTACT+TGG | - | chr4_2:12221480-12221499 | Msa0589370:intron | 25.0% |
| ! | AAATTTCAAACAAACCAAGT+AGG | + | chr4_2:12221497-12221516 | None:intergenic | 25.0% |
| !!! | ACAAAAGAGTAATTTGTTAG+AGG | + | chr4_2:12221664-12221683 | None:intergenic | 25.0% |
| TTTGCATGCATTCAAAATCA+AGG | - | chr4_2:12220518-12220537 | Msa0589370:CDS | 30.0% | |
| TAACTGCTCTACAAAACAAA+TGG | - | chr4_2:12220968-12220987 | Msa0589370:intron | 30.0% | |
| AACTGCTCTACAAAACAAAT+GGG | - | chr4_2:12220969-12220988 | Msa0589370:intron | 30.0% | |
| !! | TGTATAGAAGTATTGCATAG+AGG | + | chr4_2:12221059-12221078 | None:intergenic | 30.0% |
| TTTGAGAAATTGTACTTCTC+TGG | - | chr4_2:12221081-12221100 | Msa0589370:CDS | 30.0% | |
| TTGGTATCTTAGATACCTTT+GGG | + | chr4_2:12221111-12221130 | None:intergenic | 30.0% | |
| ATTGGTATCTTAGATACCTT+TGG | + | chr4_2:12221112-12221131 | None:intergenic | 30.0% | |
| ! | GTATCTAAGATACCAATTTG+TGG | - | chr4_2:12221115-12221134 | Msa0589370:CDS | 30.0% |
| ATATCAAATATTCCTCAAGC+AGG | - | chr4_2:12221306-12221325 | Msa0589370:CDS | 30.0% | |
| ! | ACATTTTTACCAACTATGTC+CGG | + | chr4_2:12221358-12221377 | None:intergenic | 30.0% |
| TTCGACATTTGATCGATATT+AGG | + | chr4_2:12221452-12221471 | None:intergenic | 30.0% | |
| AAAGATGAAGGAAACAAACA+AGG | - | chr4_2:12221564-12221583 | Msa0589370:intron | 30.0% | |
| TTTGCATGCATTCAAAATCA+AGG | - | chr4_2:12220518-12220537 | Msa0589370:CDS | 30.0% | |
| TAACTGCTCTACAAAACAAA+TGG | - | chr4_2:12220968-12220987 | Msa0589370:intron | 30.0% | |
| AACTGCTCTACAAAACAAAT+GGG | - | chr4_2:12220969-12220988 | Msa0589370:intron | 30.0% | |
| !! | TGTATAGAAGTATTGCATAG+AGG | + | chr4_2:12221059-12221078 | None:intergenic | 30.0% |
| TTTGAGAAATTGTACTTCTC+TGG | - | chr4_2:12221081-12221100 | Msa0589370:CDS | 30.0% | |
| TTGGTATCTTAGATACCTTT+GGG | + | chr4_2:12221111-12221130 | None:intergenic | 30.0% | |
| ATTGGTATCTTAGATACCTT+TGG | + | chr4_2:12221112-12221131 | None:intergenic | 30.0% | |
| ! | GTATCTAAGATACCAATTTG+TGG | - | chr4_2:12221115-12221134 | Msa0589370:CDS | 30.0% |
| ATATCAAATATTCCTCAAGC+AGG | - | chr4_2:12221306-12221325 | Msa0589370:CDS | 30.0% | |
| ! | ACATTTTTACCAACTATGTC+CGG | + | chr4_2:12221358-12221377 | None:intergenic | 30.0% |
| TTCGACATTTGATCGATATT+AGG | + | chr4_2:12221452-12221471 | None:intergenic | 30.0% | |
| AAAGATGAAGGAAACAAACA+AGG | - | chr4_2:12221564-12221583 | Msa0589370:intron | 30.0% | |
| TCTTGTTGAGTTTAACATGC+AGG | - | chr4_2:12220580-12220599 | Msa0589370:intron | 35.0% | |
| CTTGTTGAGTTTAACATGCA+GGG | - | chr4_2:12220581-12220600 | Msa0589370:intron | 35.0% | |
| ACAAGTCTAAGGATGTTTCT+CGG | + | chr4_2:12220722-12220741 | None:intergenic | 35.0% | |
| GTAAAGCAGATACAAGTCTA+AGG | + | chr4_2:12220733-12220752 | None:intergenic | 35.0% | |
| AGACTTGTATCTGCTTTACT+TGG | - | chr4_2:12220734-12220753 | Msa0589370:CDS | 35.0% | |
| TGGTATCTTAGATACCTTTG+GGG | + | chr4_2:12221110-12221129 | None:intergenic | 35.0% | |
| ! | TTTTCTTTGCCATCTATGTC+CGG | + | chr4_2:12221250-12221269 | None:intergenic | 35.0% |
| AAAGAAAAGAAGAAACGTCG+AGG | - | chr4_2:12221262-12221281 | Msa0589370:intron | 35.0% | |
| TCGATTAAAAGCTCATGTTC+CGG | - | chr4_2:12221336-12221355 | Msa0589370:CDS | 35.0% | |
| GATGTCTGTCATTGATAAAC+AGG | - | chr4_2:12221408-12221427 | Msa0589370:intron | 35.0% | |
| !! | CTTTTTCATGTAGCCATATG+TGG | - | chr4_2:12221531-12221550 | Msa0589370:intron | 35.0% |
| ! | TTTTTGCTTTCCTCCACATA+TGG | + | chr4_2:12221547-12221566 | None:intergenic | 35.0% |
| AGTTACACAATTAGAGTCAC+CGG | + | chr4_2:12221635-12221654 | None:intergenic | 35.0% | |
| ! | ATTCAAGAATCCCTTTTTCC+CGG | - | chr4_2:12221729-12221748 | Msa0589370:CDS | 35.0% |
| !! | AGTAAGTATCGAAATCAACC+GGG | + | chr4_2:12221750-12221769 | None:intergenic | 35.0% |
| !! | CAGTAAGTATCGAAATCAAC+CGG | + | chr4_2:12221751-12221770 | None:intergenic | 35.0% |
| TCTTGTTGAGTTTAACATGC+AGG | - | chr4_2:12220580-12220599 | Msa0589370:intron | 35.0% | |
| CTTGTTGAGTTTAACATGCA+GGG | - | chr4_2:12220581-12220600 | Msa0589370:intron | 35.0% | |
| ACAAGTCTAAGGATGTTTCT+CGG | + | chr4_2:12220722-12220741 | None:intergenic | 35.0% | |
| GTAAAGCAGATACAAGTCTA+AGG | + | chr4_2:12220733-12220752 | None:intergenic | 35.0% | |
| AGACTTGTATCTGCTTTACT+TGG | - | chr4_2:12220734-12220753 | Msa0589370:CDS | 35.0% | |
| TGGTATCTTAGATACCTTTG+GGG | + | chr4_2:12221110-12221129 | None:intergenic | 35.0% | |
| ! | TTTTCTTTGCCATCTATGTC+CGG | + | chr4_2:12221250-12221269 | None:intergenic | 35.0% |
| AAAGAAAAGAAGAAACGTCG+AGG | - | chr4_2:12221262-12221281 | Msa0589370:intron | 35.0% | |
| TCGATTAAAAGCTCATGTTC+CGG | - | chr4_2:12221336-12221355 | Msa0589370:CDS | 35.0% | |
| GATGTCTGTCATTGATAAAC+AGG | - | chr4_2:12221408-12221427 | Msa0589370:intron | 35.0% | |
| !! | CTTTTTCATGTAGCCATATG+TGG | - | chr4_2:12221531-12221550 | Msa0589370:intron | 35.0% |
| ! | TTTTTGCTTTCCTCCACATA+TGG | + | chr4_2:12221547-12221566 | None:intergenic | 35.0% |
| AGTTACACAATTAGAGTCAC+CGG | + | chr4_2:12221635-12221654 | None:intergenic | 35.0% | |
| ! | ATTCAAGAATCCCTTTTTCC+CGG | - | chr4_2:12221729-12221748 | Msa0589370:CDS | 35.0% |
| !! | AGTAAGTATCGAAATCAACC+GGG | + | chr4_2:12221750-12221769 | None:intergenic | 35.0% |
| !! | CAGTAAGTATCGAAATCAAC+CGG | + | chr4_2:12221751-12221770 | None:intergenic | 35.0% |
| AACGTTACCATAGGTGAGTT+TGG | + | chr4_2:12220369-12220388 | None:intergenic | 40.0% | |
| ! | TATGGTAACGTTGTGTCCAA+GGG | - | chr4_2:12220377-12220396 | Msa0589370:CDS | 40.0% |
| !! | AGAAGAGTATTGTTTCCCCT+TGG | + | chr4_2:12220396-12220415 | None:intergenic | 40.0% |
| TGTCAAACTCACTCAAGTGT+TGG | - | chr4_2:12220430-12220449 | Msa0589370:CDS | 40.0% | |
| GGTATCTTAGATACCTTTGG+GGG | + | chr4_2:12221109-12221128 | None:intergenic | 40.0% | |
| TGATATCCACTATTTCCCGT+TGG | + | chr4_2:12221292-12221311 | None:intergenic | 40.0% | |
| TGGTAAAAATGTCCTACGCA+TGG | - | chr4_2:12221366-12221385 | Msa0589370:intron | 40.0% | |
| TTTCATGTAGCCATATGTGG+AGG | - | chr4_2:12221534-12221553 | Msa0589370:intron | 40.0% | |
| GGAGGAAAGCAAAAAGATGA+AGG | - | chr4_2:12221552-12221571 | Msa0589370:intron | 40.0% | |
| TCGAAATCAACCGGGAAAAA+GGG | + | chr4_2:12221742-12221761 | None:intergenic | 40.0% | |
| ATCGAAATCAACCGGGAAAA+AGG | + | chr4_2:12221743-12221762 | None:intergenic | 40.0% | |
| AACGTTACCATAGGTGAGTT+TGG | + | chr4_2:12220369-12220388 | None:intergenic | 40.0% | |
| ! | TATGGTAACGTTGTGTCCAA+GGG | - | chr4_2:12220377-12220396 | Msa0589370:CDS | 40.0% |
| !! | AGAAGAGTATTGTTTCCCCT+TGG | + | chr4_2:12220396-12220415 | None:intergenic | 40.0% |
| TGTCAAACTCACTCAAGTGT+TGG | - | chr4_2:12220430-12220449 | Msa0589370:CDS | 40.0% | |
| GGTATCTTAGATACCTTTGG+GGG | + | chr4_2:12221109-12221128 | None:intergenic | 40.0% | |
| TGATATCCACTATTTCCCGT+TGG | + | chr4_2:12221292-12221311 | None:intergenic | 40.0% | |
| TGGTAAAAATGTCCTACGCA+TGG | - | chr4_2:12221366-12221385 | Msa0589370:intron | 40.0% | |
| TTTCATGTAGCCATATGTGG+AGG | - | chr4_2:12221534-12221553 | Msa0589370:intron | 40.0% | |
| GGAGGAAAGCAAAAAGATGA+AGG | - | chr4_2:12221552-12221571 | Msa0589370:intron | 40.0% | |
| TCGAAATCAACCGGGAAAAA+GGG | + | chr4_2:12221742-12221761 | None:intergenic | 40.0% | |
| ATCGAAATCAACCGGGAAAA+AGG | + | chr4_2:12221743-12221762 | None:intergenic | 40.0% | |
| ATGGAAGGCAACAACACTAC+GGG | - | chr4_2:12220320-12220339 | Msa0589370:CDS | 45.0% | |
| TCAGATGCCAAACTCACCTA+TGG | - | chr4_2:12220359-12220378 | Msa0589370:CDS | 45.0% | |
| CTTGGACACAACGTTACCAT+AGG | + | chr4_2:12220378-12220397 | None:intergenic | 45.0% | |
| ! | CTATGGTAACGTTGTGTCCA+AGG | - | chr4_2:12220376-12220395 | Msa0589370:CDS | 45.0% |
| ! | ATGGTAACGTTGTGTCCAAG+GGG | - | chr4_2:12220378-12220397 | Msa0589370:CDS | 45.0% |
| !! | ACTCAAGTGTTGGATTCCAC+TGG | - | chr4_2:12220440-12220459 | Msa0589370:CDS | 45.0% |
| TGACATGAGATTGAAGCCAG+TGG | + | chr4_2:12220459-12220478 | None:intergenic | 45.0% | |
| TACTTGGAAGTCACCAGAAG+AGG | - | chr4_2:12220750-12220769 | Msa0589370:CDS | 45.0% | |
| GTCTCTGCACTGAAACTAGA+AGG | - | chr4_2:12221000-12221019 | Msa0589370:CDS | 45.0% | |
| ACTCATGATCCGGACATAGA+TGG | - | chr4_2:12221238-12221257 | Msa0589370:intron | 45.0% | |
| AGGAAACAAACAAGGAAGCG+AGG | - | chr4_2:12221572-12221591 | Msa0589370:intron | 45.0% | |
| CATTTCAAAAGCCACGTTCG+CGG | + | chr4_2:12221698-12221717 | None:intergenic | 45.0% | |
| ATGGAAGGCAACAACACTAC+GGG | - | chr4_2:12220320-12220339 | Msa0589370:CDS | 45.0% | |
| TCAGATGCCAAACTCACCTA+TGG | - | chr4_2:12220359-12220378 | Msa0589370:CDS | 45.0% | |
| CTTGGACACAACGTTACCAT+AGG | + | chr4_2:12220378-12220397 | None:intergenic | 45.0% | |
| ! | CTATGGTAACGTTGTGTCCA+AGG | - | chr4_2:12220376-12220395 | Msa0589370:CDS | 45.0% |
| ! | ATGGTAACGTTGTGTCCAAG+GGG | - | chr4_2:12220378-12220397 | Msa0589370:CDS | 45.0% |
| !! | ACTCAAGTGTTGGATTCCAC+TGG | - | chr4_2:12220440-12220459 | Msa0589370:CDS | 45.0% |
| TGACATGAGATTGAAGCCAG+TGG | + | chr4_2:12220459-12220478 | None:intergenic | 45.0% | |
| TACTTGGAAGTCACCAGAAG+AGG | - | chr4_2:12220750-12220769 | Msa0589370:CDS | 45.0% | |
| GTCTCTGCACTGAAACTAGA+AGG | - | chr4_2:12221000-12221019 | Msa0589370:CDS | 45.0% | |
| ACTCATGATCCGGACATAGA+TGG | - | chr4_2:12221238-12221257 | Msa0589370:intron | 45.0% | |
| AGGAAACAAACAAGGAAGCG+AGG | - | chr4_2:12221572-12221591 | Msa0589370:intron | 45.0% | |
| CATTTCAAAAGCCACGTTCG+CGG | + | chr4_2:12221698-12221717 | None:intergenic | 45.0% | |
| !!! | TATTATATATCATTTTTATT+TGG | - | chr4_2:12220631-12220650 | Msa0589370:intron | 5.0% |
| !!! | TATTATATATCATTTTTATT+TGG | - | chr4_2:12220631-12220650 | Msa0589370:intron | 5.0% |
| TTGGAAGTCACCAGAAGAGG+AGG | - | chr4_2:12220753-12220772 | Msa0589370:CDS | 50.0% | |
| CTGGTGAAAACCTCCTCTTC+TGG | + | chr4_2:12220766-12220785 | None:intergenic | 50.0% | |
| ! | CAGAAGAGGAGGTTTTCACC+AGG | - | chr4_2:12220764-12220783 | Msa0589370:CDS | 50.0% |
| ATCGAGCACATTCCTGCTTG+AGG | + | chr4_2:12221321-12221340 | None:intergenic | 50.0% | |
| GCTCATGTTCCGGACATAGT+TGG | - | chr4_2:12221346-12221365 | Msa0589370:CDS | 50.0% | |
| ACGCATCAATAGCCATGCGT+AGG | + | chr4_2:12221381-12221400 | None:intergenic | 50.0% | |
| TACGCATGGCTATTGATGCG+TGG | - | chr4_2:12221380-12221399 | Msa0589370:intron | 50.0% | |
| ! | CAGAAGAAGCCTTGTGTGTC+CGG | - | chr4_2:12221613-12221632 | Msa0589370:intron | 50.0% |
| TTAGAGTCACCGGACACACA+AGG | + | chr4_2:12221625-12221644 | None:intergenic | 50.0% | |
| TTGGAAGTCACCAGAAGAGG+AGG | - | chr4_2:12220753-12220772 | Msa0589370:CDS | 50.0% | |
| CTGGTGAAAACCTCCTCTTC+TGG | + | chr4_2:12220766-12220785 | None:intergenic | 50.0% | |
| ! | CAGAAGAGGAGGTTTTCACC+AGG | - | chr4_2:12220764-12220783 | Msa0589370:CDS | 50.0% |
| ATCGAGCACATTCCTGCTTG+AGG | + | chr4_2:12221321-12221340 | None:intergenic | 50.0% | |
| GCTCATGTTCCGGACATAGT+TGG | - | chr4_2:12221346-12221365 | Msa0589370:CDS | 50.0% | |
| ACGCATCAATAGCCATGCGT+AGG | + | chr4_2:12221381-12221400 | None:intergenic | 50.0% | |
| TACGCATGGCTATTGATGCG+TGG | - | chr4_2:12221380-12221399 | Msa0589370:intron | 50.0% | |
| ! | CAGAAGAAGCCTTGTGTGTC+CGG | - | chr4_2:12221613-12221632 | Msa0589370:intron | 50.0% |
| TTAGAGTCACCGGACACACA+AGG | + | chr4_2:12221625-12221644 | None:intergenic | 50.0% | |
| TACTTCTCTGGCACCCCCAA+AGG | - | chr4_2:12221093-12221112 | Msa0589370:CDS | 55.0% | |
| ! | GAAACGTCGAGGTGCTCCAA+CGG | - | chr4_2:12221273-12221292 | Msa0589370:intron | 55.0% |
| ! | AAACGTCGAGGTGCTCCAAC+GGG | - | chr4_2:12221274-12221293 | Msa0589370:intron | 55.0% |
| GGTGCTCCAACGGGAAATAG+TGG | - | chr4_2:12221283-12221302 | Msa0589370:intron | 55.0% | |
| TACTTCTCTGGCACCCCCAA+AGG | - | chr4_2:12221093-12221112 | Msa0589370:CDS | 55.0% | |
| ! | GAAACGTCGAGGTGCTCCAA+CGG | - | chr4_2:12221273-12221292 | Msa0589370:intron | 55.0% |
| ! | AAACGTCGAGGTGCTCCAAC+GGG | - | chr4_2:12221274-12221293 | Msa0589370:intron | 55.0% |
| GGTGCTCCAACGGGAAATAG+TGG | - | chr4_2:12221283-12221302 | Msa0589370:intron | 55.0% | |
| CAACCACGCAGCCGCGAACG+TGG | - | chr4_2:12221684-12221703 | Msa0589370:CDS | 70.0% | |
| AAGCCACGTTCGCGGCTGCG+TGG | + | chr4_2:12221690-12221709 | None:intergenic | 70.0% | |
| CAACCACGCAGCCGCGAACG+TGG | - | chr4_2:12221684-12221703 | Msa0589370:CDS | 70.0% | |
| AAGCCACGTTCGCGGCTGCG+TGG | + | chr4_2:12221690-12221709 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 12220320 | 12221771 | 12220320 | ID=Msa0589370;Name=Msa0589370 |
| chr4_2 | mRNA | 12220320 | 12221771 | 12220320 | ID=Msa0589370-mRNA-1;Parent=Msa0589370;Name=Msa0589370-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|0.8|0.5|0.8|5|0|274 |
| chr4_2 | exon | 12221617 | 12221771 | 12221617 | ID=Msa0589370-mRNA-1:exon:3586;Parent=Msa0589370-mRNA-1 |
| chr4_2 | exon | 12221290 | 12221381 | 12221290 | ID=Msa0589370-mRNA-1:exon:3585;Parent=Msa0589370-mRNA-1 |
| chr4_2 | exon | 12220977 | 12221153 | 12220977 | ID=Msa0589370-mRNA-1:exon:3584;Parent=Msa0589370-mRNA-1 |
| chr4_2 | exon | 12220662 | 12220834 | 12220662 | ID=Msa0589370-mRNA-1:exon:3583;Parent=Msa0589370-mRNA-1 |
| chr4_2 | exon | 12220320 | 12220547 | 12220320 | ID=Msa0589370-mRNA-1:exon:3582;Parent=Msa0589370-mRNA-1 |
| chr4_2 | CDS | 12221617 | 12221771 | 12221617 | ID=Msa0589370-mRNA-1:cds;Parent=Msa0589370-mRNA-1 |
| chr4_2 | CDS | 12221290 | 12221381 | 12221290 | ID=Msa0589370-mRNA-1:cds;Parent=Msa0589370-mRNA-1 |
| chr4_2 | CDS | 12220977 | 12221153 | 12220977 | ID=Msa0589370-mRNA-1:cds;Parent=Msa0589370-mRNA-1 |
| chr4_2 | CDS | 12220662 | 12220834 | 12220662 | ID=Msa0589370-mRNA-1:cds;Parent=Msa0589370-mRNA-1 |
| chr4_2 | CDS | 12220320 | 12220547 | 12220320 | ID=Msa0589370-mRNA-1:cds;Parent=Msa0589370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
