AlfalfaGEDB | Msa0590850

M. sativa cultivar zhongmu-4 / Msa0590850

KEGG: K08269
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009405 GO:0009847 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044409 GO:0044419 GO:0048102 GO:0051701 GO:0051704 GO:0051828 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0590850	XP_013454906.1	93.902	738	5	5	51	749	1	737	0.0	1402

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0590850	sp\|F4IRW0\|ATG1C_ARATH	60.276	725	231	11	53	732	2	714	0.0	790

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0590850	A0A072UGS9	93.902	738	5	5	51	749	1	737	0.0	1402

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0590850	MtrunA17_Chr4g0008561	93.902	738	5	5	51	749	1	737	0.0	1402
Msa0590850	MtrunA17_Chr8g0345801	63.241	253	88	2	61	308	7	259	1.04e-106	327
Msa0590850	MtrunA17_Chr3g0129721	48.263	259	129	2	69	322	25	283	6.69e-81	260
Msa0590850	MtrunA17_Chr5g0432491	35.581	267	156	7	65	322	19	278	2.64e-43	162
Msa0590850	MtrunA17_Chr5g0441011	38.433	268	149	8	64	322	8	268	6.82e-43	161
Msa0590850	MtrunA17_Chr4g0001331	35.206	267	156	8	65	322	16	274	1.19e-42	161
Msa0590850	MtrunA17_Chr2g0304111	35.231	281	165	8	52	322	5	278	1.36e-42	161
Msa0590850	MtrunA17_Chr8g0380661	33.977	259	154	6	67	322	13	257	1.74e-41	154
Msa0590850	MtrunA17_Chr1g0166101	35.439	285	167	9	65	339	20	297	2.39e-41	156
Msa0590850	MtrunA17_Chr1g0203881	30.769	299	194	7	40	331	16	308	4.16e-41	158

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0590850	AT2G37840.1	60.276	725	231	11	53	732	2	714	0.0	790
Msa0590850	AT3G53930.2	57.283	714	244	9	62	734	13	706	0.0	747
Msa0590850	AT3G53930.1	57.143	714	244	10	62	734	13	705	0.0	740
Msa0590850	AT2G37840.2	55.062	563	206	9	211	732	21	577	0.0	532
Msa0590850	AT3G53930.4	50.092	541	213	8	231	734	1	521	5.89e-153	456
Msa0590850	AT3G53930.3	49.908	541	213	9	231	734	1	520	1.58e-150	450
Msa0590850	AT3G53930.5	49.908	541	213	9	231	734	1	520	1.58e-150	450
Msa0590850	AT3G61960.2	62.362	271	96	3	62	326	3	273	3.40e-111	350
Msa0590850	AT3G61960.1	62.362	271	96	3	62	326	3	273	4.78e-111	351
Msa0590850	AT2G37840.3	48.956	431	176	8	343	732	1	428	5.12e-105	330

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 182 sgRNAs with CRISPR-Local

Find 583 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTACCTGACCTAAATA+AGG	0.359465	4_2:+14664931	None:intergenic
AAATTACTACGCCGTAATCC+AGG	0.512647	4_2:-14666752	Msa0590850:intron
AACACAAGATGTATCTTCCC+AGG	0.567780	4_2:+14668086	None:intergenic
AACAGAATTGCAATTTCCAC+CGG	0.510524	4_2:-14666816	Msa0590850:CDS
AACAGGATGAACCATTATTA+AGG	0.339467	4_2:-14665621	Msa0590850:intron
AACCACATAATGTTTCTGCA+AGG	0.659799	4_2:+14667237	None:intergenic
AACCGAGGAAAATTATCAAG+AGG	0.605253	4_2:-14665459	Msa0590850:CDS
AACTGCCTTCTCATCATTTC+TGG	0.137680	4_2:+14667664	None:intergenic
AAGAAGATGAAACATCCATA+GGG	0.531366	4_2:+14664981	None:intergenic
AAGAAGCTTCAAGATATAGG+AGG	0.619475	4_2:-14663934	Msa0590850:CDS

Showing 1 to 10 of 182 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTGTAGGAGATTATGTAGT+AGG	-	chr4_2:14661748-14661767	Msa0590850:exon	30.0%
TTGTAGGAGATTATGTAGTA+GGG	-	chr4_2:14661749-14661768	Msa0590850:exon	30.0%
AAGTTTGATTAATGGTGTAG+TGG	-	chr4_2:14662470-14662489	Msa0590850:intron	30.0%
CCCTAATGAGAAATGATATA+TGG	-	chr4_2:14662891-14662910	Msa0590850:intron	30.0%
GCCATATATCATTTCTCATT+AGG	+	chr4_2:14662895-14662914	None:intergenic	30.0%
AGTCAAAACCAATACCATTA+TGG	+	chr4_2:14662962-14662981	None:intergenic	30.0%
CTTGTGTTAGAATACTGTAA+AGG	-	chr4_2:14663134-14663153	Msa0590850:intron	30.0%
TGTGTTAGAATACTGTAAAG+GGG	-	chr4_2:14663136-14663155	Msa0590850:intron	30.0%
TCATGTTCTTCTGGTAATAA+AGG	-	chr4_2:14663268-14663287	Msa0590850:CDS	30.0%
GTTTCAAATCTCGATGAATA+AGG	+	chr4_2:14663342-14663361	None:intergenic	30.0%

Showing 1 to 10 of 583 entries

Previous1 2 3 4 5…59Next

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	14661556	14669671	14661556	ID=Msa0590850;Name=Msa0590850
chr4_2	mRNA	14661556	14669671	14661556	ID=Msa0590850-mRNA-1;Parent=Msa0590850;Name=Msa0590850-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|0.75\|0.58\|1\|0.68\|0.47\|17\|156\|772
chr4_2	exon	14661556	14661593	14661556	ID=Msa0590850-mRNA-1:exon:4215;Parent=Msa0590850-mRNA-1
chr4_2	exon	14661640	14662078	14661640	ID=Msa0590850-mRNA-1:exon:4214;Parent=Msa0590850-mRNA-1
chr4_2	exon	14663262	14663332	14663262	ID=Msa0590850-mRNA-1:exon:4213;Parent=Msa0590850-mRNA-1
chr4_2	exon	14663786	14664014	14663786	ID=Msa0590850-mRNA-1:exon:4212;Parent=Msa0590850-mRNA-1
chr4_2	exon	14664700	14664836	14664700	ID=Msa0590850-mRNA-1:exon:4211;Parent=Msa0590850-mRNA-1
chr4_2	exon	14664843	14665055	14664843	ID=Msa0590850-mRNA-1:exon:4210;Parent=Msa0590850-mRNA-1
chr4_2	exon	14665165	14665273	14665165	ID=Msa0590850-mRNA-1:exon:4209;Parent=Msa0590850-mRNA-1
chr4_2	exon	14665310	14665544	14665310	ID=Msa0590850-mRNA-1:exon:4208;Parent=Msa0590850-mRNA-1
chr4_2	exon	14665622	14665703	14665622	ID=Msa0590850-mRNA-1:exon:4207;Parent=Msa0590850-mRNA-1
chr4_2	exon	14666753	14666861	14666753	ID=Msa0590850-mRNA-1:exon:4206;Parent=Msa0590850-mRNA-1
chr4_2	exon	14667010	14667090	14667010	ID=Msa0590850-mRNA-1:exon:4205;Parent=Msa0590850-mRNA-1
chr4_2	exon	14667184	14667277	14667184	ID=Msa0590850-mRNA-1:exon:4204;Parent=Msa0590850-mRNA-1
chr4_2	exon	14667635	14667699	14667635	ID=Msa0590850-mRNA-1:exon:4203;Parent=Msa0590850-mRNA-1
chr4_2	exon	14667861	14667919	14667861	ID=Msa0590850-mRNA-1:exon:4202;Parent=Msa0590850-mRNA-1
chr4_2	exon	14667994	14668111	14667994	ID=Msa0590850-mRNA-1:exon:4201;Parent=Msa0590850-mRNA-1
chr4_2	exon	14669264	14669427	14669264	ID=Msa0590850-mRNA-1:exon:4200;Parent=Msa0590850-mRNA-1
chr4_2	exon	14669440	14669671	14669440	ID=Msa0590850-mRNA-1:exon:4199;Parent=Msa0590850-mRNA-1
chr4_2	CDS	14669440	14669671	14669440	ID=Msa0590850-mRNA-1:cds;Parent=Msa0590850-mRNA-1
chr4_2	CDS	14669264	14669427	14669264	ID=Msa0590850-mRNA-1:cds;Parent=Msa0590850-mRNA-1
chr4_2	CDS	14667994	14668111	14667994	ID=Msa0590850-mRNA-1:cds;Parent=Msa0590850-mRNA-1
chr4_2	CDS	14667861	14667919	14667861	ID=Msa0590850-mRNA-1:cds;Parent=Msa0590850-mRNA-1
chr4_2	CDS	14667635	14667699	14667635	ID=Msa0590850-mRNA-1:cds;Parent=Msa0590850-mRNA-1
chr4_2	CDS	14667184	14667277	14667184	ID=Msa0590850-mRNA-1:cds;Parent=Msa0590850-mRNA-1
chr4_2	CDS	14667010	14667090	14667010	ID=Msa0590850-mRNA-1:cds;Parent=Msa0590850-mRNA-1
chr4_2	CDS	14666753	14666861	14666753	ID=Msa0590850-mRNA-1:cds;Parent=Msa0590850-mRNA-1
chr4_2	CDS	14665622	14665703	14665622	ID=Msa0590850-mRNA-1:cds;Parent=Msa0590850-mRNA-1
chr4_2	CDS	14665310	14665544	14665310	ID=Msa0590850-mRNA-1:cds;Parent=Msa0590850-mRNA-1
chr4_2	CDS	14665165	14665273	14665165	ID=Msa0590850-mRNA-1:cds;Parent=Msa0590850-mRNA-1
chr4_2	CDS	14664843	14665055	14664843	ID=Msa0590850-mRNA-1:cds;Parent=Msa0590850-mRNA-1
chr4_2	CDS	14664700	14664836	14664700	ID=Msa0590850-mRNA-1:cds;Parent=Msa0590850-mRNA-1
chr4_2	CDS	14663786	14664014	14663786	ID=Msa0590850-mRNA-1:cds;Parent=Msa0590850-mRNA-1
chr4_2	CDS	14663262	14663332	14663262	ID=Msa0590850-mRNA-1:cds;Parent=Msa0590850-mRNA-1
chr4_2	CDS	14661758	14662078	14661758	ID=Msa0590850-mRNA-1:cds;Parent=Msa0590850-mRNA-1
chr4_2	three_prime_UTR	14661640	14661757	14661640	ID=Msa0590850-mRNA-1:three_prime_utr;Parent=Msa0590850-mRNA-1
chr4_2	three_prime_UTR	14661556	14661593	14661556	ID=Msa0590850-mRNA-1:three_prime_utr;Parent=Msa0590850-mRNA-1

Gene Sequence

>Msa0590850

CAAAAAAAAAATCACCAAAATCAAAATCCAAACCCTAGAACCATTCCAATTCATCAAAACCACGATCCGTTTCCGCGAATTGAGTTATCAACCACCTCTGATTTCGAATTTTCACGTTTTCGGATTTTTAGGGTTTCCGATTTTCCGGCGATGGCGGCGCAAACGACGGGAAGGAGTAGTAGTAGCAGTAGGATTGTAGGAGATTATGTAGTAGGGAAGCAAATTGGAGCGGTTGTGTGGCATGCGAGACACAAAGTTCATGGAACTGAAGTTGCTATTAAAGAGATCGCTACGTTAAGATTGAATAAGAAGTTGCAAGAGAGTCTTATGTCTGAGATTTTTATTCTTAAGAGGATTAATCATCCTAATATCATTTCTTTGCATGATATTATTCAGGCTCCTGGGAAGATACATCTTGTGTTAGAATACTGTAAAGGGGGAGATCTTTCATTGTACATTCAACGCCATGGAAGGGTACCGGAGGCAACTGCAAAACATTTTATGCTTCAGCTGGCTGCTGGCCTACAAGTTCTTCGGGATAATAACCTTATTCATCGAGATTTGAAACCACAGAATCTTCTTCTCTCCAGAAATGATGAGAAGGCAGTTCTGAAGATCGCTGACTTTGGATTTGCAAGATCTCTGCAACCGAGGGGCCTTGCAGAAACATTATGTGGTTCACCACTCTACATGGCTCCAGAAATCATGCAACTGCAGAAATATGATGCAAAGGCAGATCTCTGGAGTGTTGGAGCAATCTTATATCAGTTTGTTACAGGGAAAACACCTTTTACTGGAAACAATCAAATACAGTTACTACAGAATATTGTGAATTCAACAGAATTGCAATTTCCACCGGATAGCCCAAGTTTAAGTTCTGAGTGCAAAGATTTGTGTCAGAAATTACTACGCCGTAATCCAGTGGAACGTCTAACTTTTGAAGAATTCTTTAACCACCCATTCCTTAATCCGCAGCAAACAAAACAGGATGAACCATTATTAAGGAATAAAAGCTCTCCAAGGCCGGTAAGTGGGTTCTGTTCACCAGTAACTGACCCTTTGAGAAGAACCGAGGAAAATTATCAAGAGGATTGCTTACCTTTCATTCTAGATGATGATTCCAGCAGACCTGCAGGGAATACATTGTTTTCAAAGAAGAAGTCCTCAATAAAGTCTACCTTTGGATTTGATCTAAATACAAAACTAGATAAAGCAGAGTCAGCTCCTGTTTCTAATAATAGACTTGAAAACACTTTTAAAAGATTGGACAACCATAAAATTTCAGGAAGAAATCTCACTAGTTCTCTAGAATCTCCAGAACAGATATTTGCAAACCCTTATCCAAGAGTTACAGATTCACTTGAGAATATTGATCAAGAATATGTTCTCGTGTCTGGGCCCCCTATGGATGTTTCATCTTCTTCAGTTAACGCTTCAAAGCCCAGCCATTCCTTATTTAGGTCAGGTAGCTTTCCTCAAGAGTCTTCTAATACAATCACTAGAATAAGTGCTCCAATGCAAATCGTTGGTGCATCTACCAATAGCATGTGCCAAATTGGAAGTAGTCAGGACTCTGCTCCTGGGACCTCACATGGATCAATGGATACAGGTGATGAACAGCCATCAACTCACTGCATGACAAGGGTAAAATCATTGCAAGAGTATGCATCTGCCATCACAGAATTAGTTAATGAAAAGCAAGCACTGCACATATGCCATACACAGGCTGCCTCAGCCATGGAAGGAAGTCCAAGTCAAGAAGCTTCAAGATATAGGAGGACCAACAGTAAGAAACAAGGTAGTCCTGATTCAGAAGAATGTCTTGATGAAAACACCCAAGGGACGAAGGATTTATTATCTCAAATTGAAAGTGATTTTTTGAGGGAATTTGAGCATGCCGAAGAACTTGCTAAGACCATTGAGCCTGGAAATACAGAGATGCCAGATGCAATGGAGACAATATTTCAAGCCGCCCTTGCTTTTGGGAGACATGGGGGAGTAGAAGAGCTCATGGGTGATACAGAAAGTGCTGCTGCATTATATTCAAAAGCCGTCCGTCTATTGGTTTTCCTTCTAGTGGAAGGACCATCTCTGATCCTCAACCCTCCATTTTCATTGACAAACTCAGACCGTTACAGGCTACGGAATTACATTGATATTCTTAATAACAGACAAGGTTACTCAAGGTCTCAGAGAATGACACTTCTCAAGGGCGATGATAGTCAAGGCATCTTTAAGGAAAATTTTAGAGCTTTAGCGGTGTTTCTTTATTTACCATTTCACACGTTAAAATTAATTATTTGTACAGTTATTCTTTGA

Protein sequence

>Msa0590850

QKKNHQNQNPNPRTIPIHQNHDPFPRIELSTTSDFEFSRFRIFRVSDFPAMAAQTTGRSSSSSRIVGDYVVGKQIGAVVWHARHKVHGTEVAIKEIATLRLNKKLQESLMSEIFILKRINHPNIISLHDIIQAPGKIHLVLEYCKGGDLSLYIQRHGRVPEATAKHFMLQLAAGLQVLRDNNLIHRDLKPQNLLLSRNDEKAVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILYQFVTGKTPFTGNNQIQLLQNIVNSTELQFPPDSPSLSSECKDLCQKLLRRNPVERLTFEEFFNHPFLNPQQTKQDEPLLRNKSSPRPVSGFCSPVTDPLRRTEENYQEDCLPFILDDDSSRPAGNTLFSKKKSSIKSTFGFDLNTKLDKAESAPVSNNRLENTFKRLDNHKISGRNLTSSLESPEQIFANPYPRVTDSLENIDQEYVLVSGPPMDVSSSSVNASKPSHSLFRSGSFPQESSNTITRISAPMQIVGASTNSMCQIGSSQDSAPGTSHGSMDTGDEQPSTHCMTRVKSLQEYASAITELVNEKQALHICHTQAASAMEGSPSQEASRYRRTNSKKQGSPDSEECLDENTQGTKDLLSQIESDFLREFEHAEELAKTIEPGNTEMPDAMETIFQAALAFGRHGGVEELMGDTESAAALYSKAVRLLVFLLVEGPSLILNPPFSLTNSDRYRLRNYIDILNNRQGYSRSQRMTLLKGDDSQGIFKENFRALAVFLYLPFHTLKLIICTVIL*