Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591980 | XP_013455021.2 | 86.901 | 313 | 39 | 1 | 1 | 313 | 1 | 311 | 0.0 | 568 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591980 | sp|Q8L9Y3|ARR14_ARATH | 39.382 | 259 | 124 | 5 | 7 | 232 | 4 | 262 | 4.37e-54 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0591980 | TF | GARP-ARR-B |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591980 | MtrunA17_Chr4g0009851 | 84.076 | 314 | 47 | 2 | 1 | 313 | 1 | 312 | 0.0 | 541 |
| Msa0591980 | MtrunA17_Chr4g0009981 | 86.590 | 261 | 33 | 1 | 53 | 313 | 1 | 259 | 2.40e-169 | 470 |
| Msa0591980 | MtrunA17_Chr4g0009901 | 74.793 | 242 | 59 | 1 | 1 | 242 | 1 | 240 | 3.38e-126 | 361 |
| Msa0591980 | MtrunA17_Chr4g0011071 | 76.978 | 139 | 30 | 1 | 55 | 193 | 35 | 171 | 1.26e-71 | 219 |
| Msa0591980 | MtrunA17_Chr1g0161431 | 37.534 | 373 | 166 | 9 | 2 | 309 | 3 | 373 | 2.94e-69 | 226 |
| Msa0591980 | MtrunA17_Chr6g0471041 | 46.416 | 293 | 138 | 8 | 10 | 296 | 14 | 293 | 9.41e-69 | 220 |
| Msa0591980 | MtrunA17_Chr3g0123131 | 40.316 | 253 | 118 | 5 | 10 | 231 | 13 | 263 | 2.21e-58 | 196 |
| Msa0591980 | MtrunA17_Chr4g0009991 | 77.311 | 119 | 24 | 2 | 101 | 219 | 1 | 116 | 1.69e-56 | 179 |
| Msa0591980 | MtrunA17_Chr8g0376881 | 39.695 | 262 | 125 | 6 | 9 | 239 | 24 | 283 | 2.18e-56 | 191 |
| Msa0591980 | MtrunA17_Chr4g0067981 | 38.868 | 265 | 133 | 4 | 10 | 248 | 31 | 292 | 6.18e-55 | 189 |
| Msa0591980 | MtrunA17_Chr2g0294911 | 39.245 | 265 | 133 | 4 | 10 | 248 | 29 | 291 | 6.95e-55 | 188 |
| Msa0591980 | MtrunA17_Chr4g0010001 | 84.270 | 89 | 14 | 0 | 1 | 89 | 1 | 89 | 7.21e-52 | 166 |
| Msa0591980 | MtrunA17_Chr7g0275401 | 38.000 | 250 | 128 | 5 | 7 | 229 | 2 | 251 | 1.35e-51 | 172 |
| Msa0591980 | MtrunA17_Chr1g0149841 | 39.200 | 250 | 118 | 4 | 7 | 226 | 2 | 247 | 1.00e-50 | 175 |
| Msa0591980 | MtrunA17_Chr8g0391911 | 38.683 | 243 | 119 | 5 | 4 | 219 | 3 | 242 | 5.82e-49 | 164 |
| Msa0591980 | MtrunA17_Chr5g0423031 | 80.899 | 89 | 17 | 0 | 1 | 89 | 1 | 89 | 3.04e-47 | 157 |
| Msa0591980 | MtrunA17_Chr7g0275891 | 34.767 | 279 | 141 | 5 | 7 | 244 | 2 | 280 | 3.30e-47 | 162 |
| Msa0591980 | MtrunA17_Chr3g0137101 | 37.652 | 247 | 124 | 3 | 10 | 226 | 8 | 254 | 5.09e-47 | 167 |
| Msa0591980 | MtrunA17_Chr8g0383961 | 43.220 | 236 | 101 | 7 | 1 | 231 | 1 | 208 | 5.28e-47 | 159 |
| Msa0591980 | MtrunA17_Chr1g0149851 | 34.866 | 261 | 129 | 4 | 7 | 226 | 2 | 262 | 3.63e-42 | 152 |
| Msa0591980 | MtrunA17_Chr4g0074401 | 32.800 | 250 | 142 | 4 | 10 | 233 | 17 | 266 | 7.90e-42 | 152 |
| Msa0591980 | MtrunA17_Chr4g0074411 | 33.871 | 248 | 141 | 4 | 9 | 233 | 17 | 264 | 1.00e-41 | 152 |
| Msa0591980 | MtrunA17_Chr2g0304841 | 33.333 | 255 | 135 | 3 | 10 | 229 | 18 | 272 | 2.41e-41 | 152 |
| Msa0591980 | MtrunA17_Chr6g0456631 | 42.857 | 161 | 86 | 3 | 4 | 161 | 3 | 160 | 6.49e-39 | 135 |
| Msa0591980 | MtrunA17_Chr3g0134461 | 37.264 | 212 | 104 | 4 | 10 | 219 | 8 | 192 | 3.11e-38 | 134 |
| Msa0591980 | MtrunA17_Chr3g0134481 | 35.135 | 222 | 104 | 4 | 1 | 221 | 1 | 183 | 1.24e-36 | 130 |
| Msa0591980 | MtrunA17_Chr4g0074421 | 37.569 | 181 | 93 | 3 | 59 | 219 | 2 | 182 | 4.83e-36 | 128 |
| Msa0591980 | MtrunA17_Chr1g0149831 | 38.298 | 188 | 80 | 4 | 68 | 226 | 1 | 181 | 2.08e-32 | 120 |
| Msa0591980 | MtrunA17_Chr8g0350761 | 22.969 | 357 | 215 | 9 | 12 | 309 | 19 | 374 | 6.06e-21 | 92.8 |
| Msa0591980 | MtrunA17_Chr6g0473731 | 32.530 | 166 | 102 | 3 | 89 | 248 | 10 | 171 | 1.21e-19 | 89.0 |
| Msa0591980 | MtrunA17_Chr2g0324891 | 38.710 | 93 | 55 | 1 | 136 | 226 | 125 | 217 | 3.61e-14 | 72.8 |
| Msa0591980 | MtrunA17_Chr5g0417521 | 55.556 | 54 | 23 | 1 | 170 | 222 | 15 | 68 | 9.43e-14 | 70.9 |
| Msa0591980 | MtrunA17_Chr6g0461641 | 44.872 | 78 | 42 | 1 | 170 | 246 | 42 | 119 | 2.81e-13 | 69.7 |
| Msa0591980 | MtrunA17_Chr7g0261911 | 40.594 | 101 | 55 | 3 | 161 | 256 | 253 | 353 | 2.86e-13 | 70.1 |
| Msa0591980 | MtrunA17_Chr4g0040481 | 48.276 | 58 | 30 | 0 | 169 | 226 | 157 | 214 | 4.74e-13 | 69.3 |
| Msa0591980 | MtrunA17_Chr7g0254981 | 40.659 | 91 | 51 | 2 | 168 | 257 | 48 | 136 | 6.15e-13 | 67.8 |
| Msa0591980 | MtrunA17_Chr4g0042451 | 51.852 | 54 | 25 | 1 | 170 | 222 | 17 | 70 | 1.14e-12 | 67.8 |
| Msa0591980 | MtrunA17_Chr2g0321461 | 47.887 | 71 | 35 | 2 | 153 | 222 | 29 | 98 | 1.32e-12 | 67.8 |
| Msa0591980 | MtrunA17_Chr5g0400241 | 34.940 | 83 | 54 | 0 | 169 | 251 | 310 | 392 | 2.75e-12 | 67.4 |
| Msa0591980 | MtrunA17_Chr2g0291021 | 55.556 | 54 | 23 | 1 | 170 | 222 | 49 | 102 | 9.35e-12 | 65.1 |
| Msa0591980 | MtrunA17_Chr7g0274471 | 40.659 | 91 | 51 | 3 | 170 | 258 | 218 | 307 | 1.12e-11 | 65.1 |
| Msa0591980 | MtrunA17_Chr7g0255711 | 48.276 | 58 | 30 | 0 | 169 | 226 | 90 | 147 | 1.15e-11 | 64.3 |
| Msa0591980 | MtrunA17_Chr4g0054981 | 48.148 | 54 | 28 | 0 | 169 | 222 | 309 | 362 | 1.33e-11 | 65.1 |
| Msa0591980 | MtrunA17_Chr4g0031961 | 46.552 | 58 | 31 | 0 | 169 | 226 | 130 | 187 | 2.53e-11 | 63.5 |
| Msa0591980 | MtrunA17_Chr1g0175091 | 42.254 | 71 | 38 | 2 | 153 | 222 | 243 | 311 | 2.85e-11 | 63.9 |
| Msa0591980 | MtrunA17_Chr7g0242521 | 50.000 | 70 | 26 | 3 | 157 | 222 | 5 | 69 | 4.45e-11 | 62.0 |
| Msa0591980 | MtrunA17_Chr1g0190301 | 47.059 | 68 | 34 | 2 | 166 | 231 | 171 | 238 | 5.23e-11 | 63.2 |
| Msa0591980 | MtrunA17_Chr7g0258551 | 47.368 | 57 | 29 | 1 | 167 | 222 | 209 | 265 | 6.04e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591980 | AT2G01760.1 | 39.382 | 259 | 124 | 5 | 7 | 232 | 4 | 262 | 4.44e-55 | 184 |
| Msa0591980 | AT1G67710.1 | 39.700 | 267 | 125 | 9 | 11 | 243 | 8 | 272 | 1.17e-53 | 183 |
| Msa0591980 | AT3G16857.1 | 36.039 | 308 | 139 | 9 | 10 | 259 | 33 | 340 | 1.49e-50 | 177 |
| Msa0591980 | AT3G16857.2 | 36.039 | 308 | 139 | 9 | 10 | 259 | 33 | 340 | 1.65e-50 | 177 |
| Msa0591980 | AT2G01760.2 | 35.540 | 287 | 124 | 6 | 7 | 232 | 4 | 290 | 3.77e-49 | 169 |
| Msa0591980 | AT4G31920.1 | 36.481 | 233 | 138 | 2 | 10 | 232 | 13 | 245 | 5.25e-46 | 163 |
| Msa0591980 | AT2G25180.1 | 38.750 | 240 | 123 | 6 | 10 | 226 | 13 | 251 | 6.88e-44 | 158 |
| Msa0591980 | AT3G16857.3 | 34.944 | 269 | 117 | 9 | 49 | 259 | 2 | 270 | 9.09e-40 | 147 |
| Msa0591980 | AT5G58080.1 | 37.349 | 249 | 132 | 6 | 10 | 236 | 14 | 260 | 5.48e-39 | 145 |
| Msa0591980 | AT1G67710.2 | 39.713 | 209 | 91 | 8 | 68 | 243 | 1 | 207 | 4.78e-36 | 135 |
| Msa0591980 | AT2G01760.3 | 37.056 | 197 | 92 | 4 | 68 | 232 | 1 | 197 | 4.99e-35 | 129 |
| Msa0591980 | AT5G49240.1 | 31.356 | 236 | 137 | 5 | 9 | 219 | 37 | 272 | 4.74e-34 | 126 |
| Msa0591980 | AT3G62670.1 | 30.258 | 271 | 159 | 9 | 28 | 272 | 53 | 319 | 2.84e-32 | 124 |
| Msa0591980 | AT1G49190.1 | 27.734 | 256 | 154 | 6 | 10 | 234 | 30 | 285 | 1.52e-28 | 114 |
| Msa0591980 | AT1G67710.3 | 38.095 | 189 | 82 | 8 | 88 | 243 | 12 | 198 | 5.16e-27 | 110 |
| Msa0591980 | AT5G07210.2 | 27.778 | 270 | 141 | 7 | 14 | 231 | 16 | 283 | 1.57e-25 | 107 |
| Msa0591980 | AT5G07210.1 | 26.978 | 278 | 141 | 8 | 14 | 231 | 16 | 291 | 5.19e-23 | 99.8 |
| Msa0591980 | AT2G27070.1 | 25.379 | 264 | 140 | 8 | 14 | 222 | 16 | 277 | 2.57e-19 | 89.0 |
| Msa0591980 | AT1G49190.2 | 32.258 | 124 | 83 | 1 | 10 | 132 | 30 | 153 | 1.75e-17 | 83.6 |
| Msa0591980 | AT5G29000.4 | 44.086 | 93 | 47 | 3 | 148 | 238 | 212 | 301 | 3.00e-15 | 75.5 |
| Msa0591980 | AT5G29000.2 | 42.000 | 100 | 53 | 3 | 148 | 245 | 212 | 308 | 3.33e-15 | 76.3 |
| Msa0591980 | AT5G29000.1 | 42.000 | 100 | 53 | 3 | 148 | 245 | 169 | 265 | 4.25e-15 | 75.5 |
| Msa0591980 | AT5G29000.3 | 42.000 | 100 | 53 | 3 | 148 | 245 | 169 | 265 | 4.25e-15 | 75.5 |
| Msa0591980 | AT5G44190.1 | 48.333 | 60 | 31 | 0 | 167 | 226 | 144 | 203 | 1.19e-13 | 71.2 |
| Msa0591980 | AT5G44190.2 | 48.333 | 60 | 31 | 0 | 167 | 226 | 144 | 203 | 1.39e-13 | 70.9 |
| Msa0591980 | AT3G04030.1 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 3.59e-13 | 70.1 |
| Msa0591980 | AT3G04030.3 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 4.06e-13 | 69.7 |
| Msa0591980 | AT4G28610.1 | 47.126 | 87 | 40 | 4 | 170 | 252 | 225 | 309 | 6.46e-13 | 69.3 |
| Msa0591980 | AT5G18240.2 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 7.06e-13 | 68.9 |
| Msa0591980 | AT5G18240.3 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 7.06e-13 | 68.9 |
| Msa0591980 | AT5G18240.5 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 8.06e-13 | 68.9 |
| Msa0591980 | AT5G18240.1 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 8.34e-13 | 68.9 |
| Msa0591980 | AT5G18240.4 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 8.34e-13 | 68.9 |
| Msa0591980 | AT2G01060.1 | 45.783 | 83 | 42 | 2 | 159 | 238 | 4 | 86 | 1.15e-12 | 67.8 |
| Msa0591980 | AT5G59570.2 | 42.105 | 76 | 41 | 1 | 151 | 226 | 125 | 197 | 1.19e-12 | 67.8 |
| Msa0591980 | AT5G59570.1 | 42.105 | 76 | 41 | 1 | 151 | 226 | 125 | 197 | 1.19e-12 | 67.8 |
| Msa0591980 | AT3G04450.3 | 48.276 | 58 | 29 | 1 | 166 | 222 | 234 | 291 | 1.64e-12 | 67.4 |
| Msa0591980 | AT3G46640.2 | 43.210 | 81 | 43 | 2 | 146 | 226 | 123 | 200 | 2.31e-12 | 67.0 |
| Msa0591980 | AT3G46640.1 | 43.210 | 81 | 43 | 2 | 146 | 226 | 123 | 200 | 2.31e-12 | 67.0 |
| Msa0591980 | AT3G04030.2 | 52.830 | 53 | 25 | 0 | 170 | 222 | 45 | 97 | 2.34e-12 | 67.4 |
| Msa0591980 | AT3G46640.3 | 43.210 | 81 | 43 | 2 | 146 | 226 | 123 | 200 | 2.55e-12 | 67.0 |
| Msa0591980 | AT3G04450.1 | 48.276 | 58 | 29 | 1 | 166 | 222 | 234 | 291 | 3.37e-12 | 67.0 |
| Msa0591980 | AT3G04450.4 | 48.276 | 58 | 29 | 1 | 166 | 222 | 194 | 251 | 4.14e-12 | 66.6 |
| Msa0591980 | AT3G04450.2 | 48.276 | 58 | 29 | 1 | 166 | 222 | 194 | 251 | 4.14e-12 | 66.6 |
| Msa0591980 | AT2G40970.1 | 38.158 | 76 | 47 | 0 | 151 | 226 | 86 | 161 | 5.93e-12 | 65.1 |
| Msa0591980 | AT1G69580.1 | 51.852 | 54 | 25 | 1 | 170 | 222 | 34 | 87 | 5.99e-12 | 65.9 |
| Msa0591980 | AT2G20570.1 | 46.552 | 58 | 31 | 0 | 169 | 226 | 152 | 209 | 6.50e-12 | 66.2 |
| Msa0591980 | AT1G69580.2 | 51.852 | 54 | 25 | 1 | 170 | 222 | 34 | 87 | 6.74e-12 | 65.9 |
| Msa0591980 | AT3G10760.1 | 48.276 | 58 | 30 | 0 | 169 | 226 | 104 | 161 | 1.08e-11 | 65.1 |
| Msa0591980 | AT5G05090.1 | 48.276 | 58 | 30 | 0 | 169 | 226 | 80 | 137 | 1.30e-11 | 64.3 |
| Msa0591980 | AT2G20570.2 | 47.273 | 55 | 29 | 0 | 172 | 226 | 171 | 225 | 4.22e-11 | 63.9 |
| Msa0591980 | AT4G18020.8 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 4.42e-11 | 63.9 |
| Msa0591980 | AT4G18020.11 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 4.42e-11 | 63.9 |
| Msa0591980 | AT4G18020.4 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 4.42e-11 | 63.9 |
| Msa0591980 | AT4G18020.5 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 4.42e-11 | 63.9 |
| Msa0591980 | AT4G18020.10 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 4.42e-11 | 63.9 |
| Msa0591980 | AT4G18020.7 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 4.42e-11 | 63.9 |
| Msa0591980 | AT4G18020.3 | 41.791 | 67 | 38 | 1 | 161 | 227 | 288 | 353 | 5.00e-11 | 63.9 |
| Msa0591980 | AT4G18020.2 | 41.791 | 67 | 38 | 1 | 161 | 227 | 288 | 353 | 5.00e-11 | 63.9 |
| Msa0591980 | AT4G18020.1 | 41.791 | 67 | 38 | 1 | 161 | 227 | 288 | 353 | 5.00e-11 | 63.9 |
| Msa0591980 | AT4G18020.6 | 41.791 | 67 | 38 | 1 | 161 | 227 | 288 | 353 | 5.00e-11 | 63.9 |
| Msa0591980 | AT4G18020.9 | 41.791 | 67 | 38 | 1 | 161 | 227 | 288 | 353 | 5.00e-11 | 63.9 |
| Msa0591980 | AT3G24120.2 | 48.529 | 68 | 31 | 2 | 170 | 233 | 41 | 108 | 6.53e-11 | 62.8 |
| Msa0591980 | AT3G24120.1 | 48.529 | 68 | 31 | 2 | 170 | 233 | 41 | 108 | 6.58e-11 | 62.4 |
| Msa0591980 | AT4G04605.1 | 46.970 | 66 | 33 | 2 | 168 | 231 | 12 | 77 | 9.10e-11 | 61.2 |
Find 60 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATTGTGTCGCAGAATTC+AGG | 0.268438 | 4_2:+16989678 | None:intergenic |
| ACATATTGCCAGCCATTTAC+AGG | 0.282271 | 4_2:-16990184 | Msa0591980:intron |
| TTCAGTTACCAAATGTAGTA+TGG | 0.293347 | 4_2:-16990909 | Msa0591980:intron |
| CAACGACATTGGGTGGAAAT+TGG | 0.345706 | 4_2:-16989638 | Msa0591980:CDS |
| TGAGTTGTAGGGTAACATTT+TGG | 0.376494 | 4_2:+16990792 | None:intergenic |
| GATAAATCATCATCAACATA+TGG | 0.380393 | 4_2:+16989566 | None:intergenic |
| AATGTGGGGCTTGCGAATAT+TGG | 0.385194 | 4_2:-16990596 | Msa0591980:CDS |
| CGAATATTGGACTAAGCCTT+TGG | 0.392176 | 4_2:-16990583 | Msa0591980:CDS |
| TGACAGGAATGTTGAGTTGT+AGG | 0.408636 | 4_2:+16990780 | None:intergenic |
| ATCAGAAGCCATACTACATT+TGG | 0.409595 | 4_2:+16990901 | None:intergenic |
| GGTTCAAGAAAATACAAAAC+GGG | 0.418901 | 4_2:-16990466 | Msa0591980:CDS |
| CTTTCTTTCCAACATGTTGA+AGG | 0.419409 | 4_2:+16990877 | None:intergenic |
| CAAAGAAGGCCCGTTTGTCT+TGG | 0.435563 | 4_2:-16990407 | Msa0591980:CDS |
| AAAAGAAACACTTGCAAAGA+AGG | 0.435703 | 4_2:-16990421 | Msa0591980:CDS |
| GCAATAACCTCGAGACCGGC+TGG | 0.445702 | 4_2:+16991096 | None:intergenic |
| TTGCGATGCACAACGACATT+GGG | 0.452490 | 4_2:-16989648 | Msa0591980:CDS |
| TCGAGACCGGCTGGGAATGA+TGG | 0.453544 | 4_2:+16991105 | None:intergenic |
| CTTCAACATGTTGGAAAGAA+AGG | 0.459586 | 4_2:-16990876 | Msa0591980:CDS |
| AATAAATTCTTACTAATGAC+AGG | 0.461511 | 4_2:+16990764 | None:intergenic |
| AATAAAGAATATGAAAATGT+TGG | 0.463084 | 4_2:-16990498 | Msa0591980:CDS |
| TTCTCGTGACCAAGACAAAC+GGG | 0.467708 | 4_2:+16990398 | None:intergenic |
| TCAACATATGGGAACAAGTT+GGG | 0.468173 | 4_2:+16989578 | None:intergenic |
| TGATGGGTTATCAGTGAAAC+GGG | 0.468852 | 4_2:+16991122 | None:intergenic |
| TACTCACTCAATGCCGGAGC+AGG | 0.473606 | 4_2:-16989714 | Msa0591980:CDS |
| AAAAGTGTTGCTCATAATGT+TGG | 0.490442 | 4_2:+16989610 | None:intergenic |
| AAGTCATAAACATCCATGTC+TGG | 0.491105 | 4_2:+16990818 | None:intergenic |
| CACTTTCCTCAACTCTATTG+AGG | 0.492388 | 4_2:-16991058 | Msa0591980:CDS |
| TGGTTCAAGAAAATACAAAA+CGG | 0.498426 | 4_2:-16990467 | Msa0591980:CDS |
| AGGAAAGAATCATACTATCA+AGG | 0.510494 | 4_2:+16990337 | None:intergenic |
| ATTGCGATGCACAACGACAT+TGG | 0.516098 | 4_2:-16989649 | Msa0591980:CDS |
| ATGATGGGTTATCAGTGAAA+CGG | 0.516952 | 4_2:+16991121 | None:intergenic |
| TGTAATCGATATCATTATCA+AGG | 0.517908 | 4_2:-16991030 | Msa0591980:intron |
| GACAGGAATGTTGAGTTGTA+GGG | 0.519779 | 4_2:+16990781 | None:intergenic |
| ATCATGAAGTCTATTGAATG+TGG | 0.526495 | 4_2:-16990612 | Msa0591980:CDS |
| ATTCTCGTGACCAAGACAAA+CGG | 0.526657 | 4_2:+16990397 | None:intergenic |
| AAAATGAACCTGTAAATGGC+TGG | 0.527802 | 4_2:+16990176 | None:intergenic |
| TTCTGATGCCTTCAACATGT+TGG | 0.527887 | 4_2:-16990885 | Msa0591980:CDS |
| CATGTTGCAAGAATTAGAAA+CGG | 0.528421 | 4_2:-16990531 | Msa0591980:CDS |
| CGAGACCGGCTGGGAATGAT+GGG | 0.533761 | 4_2:+16991106 | None:intergenic |
| ATATGAAAATGTTGGAAGCT+CGG | 0.535763 | 4_2:-16990490 | Msa0591980:CDS |
| CTACGTGCAGTCAATCAACT+AGG | 0.547867 | 4_2:-16990360 | Msa0591980:CDS |
| ATAAATCATCATCAACATAT+GGG | 0.548211 | 4_2:+16989567 | None:intergenic |
| AGCTCAACAGAAGAGACAAA+AGG | 0.548661 | 4_2:-16989791 | Msa0591980:CDS |
| AGAAAACTCTGGTCCTGCTC+CGG | 0.548712 | 4_2:+16989701 | None:intergenic |
| TCATGAAGTCTATTGAATGT+GGG | 0.549366 | 4_2:-16990611 | Msa0591980:CDS |
| AATTGCAATAACCTCGAGAC+CGG | 0.556151 | 4_2:+16991092 | None:intergenic |
| ATCAACATATGGGAACAAGT+TGG | 0.563419 | 4_2:+16989577 | None:intergenic |
| CGATGCACAACGACATTGGG+TGG | 0.580466 | 4_2:-16989645 | Msa0591980:CDS |
| AGAAGCTACTCACTCAATGC+CGG | 0.591913 | 4_2:-16989720 | Msa0591980:CDS |
| ATCATTCCCAGCCGGTCTCG+AGG | 0.599280 | 4_2:-16991103 | Msa0591980:CDS |
| CAATAACCTCGAGACCGGCT+GGG | 0.602751 | 4_2:+16991097 | None:intergenic |
| CAGAATTCAGGAGAAAACTC+TGG | 0.602905 | 4_2:+16989690 | None:intergenic |
| CATGAAGTCTATTGAATGTG+GGG | 0.606058 | 4_2:-16990610 | Msa0591980:CDS |
| CAACAGAAGAGACAAAAGGT+AGG | 0.617016 | 4_2:-16989787 | Msa0591980:CDS |
| ACATCTCCTCAATAGAGTTG+AGG | 0.625514 | 4_2:+16991052 | None:intergenic |
| TGATGCTCATATGCCAGACA+TGG | 0.629107 | 4_2:-16990831 | Msa0591980:CDS |
| GATAACCCATCATTCCCAGC+CGG | 0.638659 | 4_2:-16991111 | Msa0591980:CDS |
| TGAAAATGTTGGAAGCTCGG+TGG | 0.688521 | 4_2:-16990487 | Msa0591980:CDS |
| ATGATTTATCATCACTTGTG+TGG | 0.696325 | 4_2:-16989553 | Msa0591980:CDS |
| GTTCAAGAAAATACAAAACG+GGG | 0.749177 | 4_2:-16990465 | Msa0591980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAGAATATGAAAATGT+TGG | - | chr4_2:16990178-16990197 | Msa0591980:intron | 15.0% |
| !!! | AATATGTTCTTTTTTCATAT+CGG | + | chr4_2:16990479-16990498 | None:intergenic | 15.0% |
| !!! | TGATTTTAAACTGAAATTTA+TGG | - | chr4_2:16990800-16990819 | Msa0591980:CDS | 15.0% |
| !! | AATAAAGAATATGAAAATGT+TGG | - | chr4_2:16990178-16990197 | Msa0591980:intron | 15.0% |
| !!! | AATATGTTCTTTTTTCATAT+CGG | + | chr4_2:16990479-16990498 | None:intergenic | 15.0% |
| !!! | TGATTTTAAACTGAAATTTA+TGG | - | chr4_2:16990800-16990819 | Msa0591980:CDS | 15.0% |
| !! | AAAAGATGAAAACTTGAATA+AGG | + | chr4_2:16989689-16989708 | None:intergenic | 20.0% |
| !!! | ATTCAAGTTTTCATCTTTTT+TGG | - | chr4_2:16989690-16989709 | Msa0591980:CDS | 20.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | + | chr4_2:16989915-16989934 | None:intergenic | 20.0% |
| !!! | ATATTTCTTTTTTGTAGTGA+TGG | - | chr4_2:16990018-16990037 | Msa0591980:intron | 20.0% |
| !! | AGCATAGTAAAAAAGTAATT+AGG | + | chr4_2:16990362-16990381 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTCTTAATTTTC+AGG | - | chr4_2:16990415-16990434 | Msa0591980:CDS | 20.0% |
| !!! | ATGATTTTCAGAATCTTTTT+TGG | + | chr4_2:16990448-16990467 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTCTGAAAATCA+TGG | - | chr4_2:16990447-16990466 | Msa0591980:CDS | 20.0% |
| !!! | ATATGTTCTTTTTTCATATC+GGG | + | chr4_2:16990478-16990497 | None:intergenic | 20.0% |
| !!! | TTTTGCAGAAATATAGAAAT+CGG | - | chr4_2:16990856-16990875 | Msa0591980:CDS | 20.0% |
| !! | ATAAATCATCATCAACATAT+GGG | + | chr4_2:16991112-16991131 | None:intergenic | 20.0% |
| !! | AAAAGATGAAAACTTGAATA+AGG | + | chr4_2:16989689-16989708 | None:intergenic | 20.0% |
| !!! | ATTCAAGTTTTCATCTTTTT+TGG | - | chr4_2:16989690-16989709 | Msa0591980:CDS | 20.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | + | chr4_2:16989915-16989934 | None:intergenic | 20.0% |
| !!! | ATATTTCTTTTTTGTAGTGA+TGG | - | chr4_2:16990018-16990037 | Msa0591980:intron | 20.0% |
| !! | AGCATAGTAAAAAAGTAATT+AGG | + | chr4_2:16990362-16990381 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTCTTAATTTTC+AGG | - | chr4_2:16990415-16990434 | Msa0591980:CDS | 20.0% |
| !!! | ATGATTTTCAGAATCTTTTT+TGG | + | chr4_2:16990448-16990467 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTCTGAAAATCA+TGG | - | chr4_2:16990447-16990466 | Msa0591980:CDS | 20.0% |
| !!! | ATATGTTCTTTTTTCATATC+GGG | + | chr4_2:16990478-16990497 | None:intergenic | 20.0% |
| !!! | TTTTGCAGAAATATAGAAAT+CGG | - | chr4_2:16990856-16990875 | Msa0591980:CDS | 20.0% |
| !! | ATAAATCATCATCAACATAT+GGG | + | chr4_2:16991112-16991131 | None:intergenic | 20.0% |
| ! | TGTAATCGATATCATTATCA+AGG | - | chr4_2:16989646-16989665 | Msa0591980:CDS | 25.0% |
| ! | TGGTTCAAGAAAATACAAAA+CGG | - | chr4_2:16990209-16990228 | Msa0591980:CDS | 25.0% |
| ! | TACAAAAATGAACCTGTAAA+TGG | + | chr4_2:16990507-16990526 | None:intergenic | 25.0% |
| ! | TACTTTACAACTTCAATAGT+TGG | + | chr4_2:16990665-16990684 | None:intergenic | 25.0% |
| ! | AGTAGTATATTATCAACAAG+AGG | + | chr4_2:16990769-16990788 | None:intergenic | 25.0% |
| !!! | AAGTCAAATTTTGTTTCAAG+AGG | + | chr4_2:16990936-16990955 | None:intergenic | 25.0% |
| ! | GATAAATCATCATCAACATA+TGG | + | chr4_2:16991113-16991132 | None:intergenic | 25.0% |
| ! | TGTAATCGATATCATTATCA+AGG | - | chr4_2:16989646-16989665 | Msa0591980:CDS | 25.0% |
| ! | TGGTTCAAGAAAATACAAAA+CGG | - | chr4_2:16990209-16990228 | Msa0591980:CDS | 25.0% |
| ! | TACAAAAATGAACCTGTAAA+TGG | + | chr4_2:16990507-16990526 | None:intergenic | 25.0% |
| ! | TACTTTACAACTTCAATAGT+TGG | + | chr4_2:16990665-16990684 | None:intergenic | 25.0% |
| ! | AGTAGTATATTATCAACAAG+AGG | + | chr4_2:16990769-16990788 | None:intergenic | 25.0% |
| !!! | AAGTCAAATTTTGTTTCAAG+AGG | + | chr4_2:16990936-16990955 | None:intergenic | 25.0% |
| ! | GATAAATCATCATCAACATA+TGG | + | chr4_2:16991113-16991132 | None:intergenic | 25.0% |
| TTCAGTTACCAAATGTAGTA+TGG | - | chr4_2:16989767-16989786 | Msa0591980:CDS | 30.0% | |
| ! | CTTCATGATAGAACTTTTTG+TGG | + | chr4_2:16990053-16990072 | None:intergenic | 30.0% |
| ATCATGAAGTCTATTGAATG+TGG | - | chr4_2:16990064-16990083 | Msa0591980:intron | 30.0% | |
| TCATGAAGTCTATTGAATGT+GGG | - | chr4_2:16990065-16990084 | Msa0591980:intron | 30.0% | |
| CATGTTGCAAGAATTAGAAA+CGG | - | chr4_2:16990145-16990164 | Msa0591980:intron | 30.0% | |
| ATATGAAAATGTTGGAAGCT+CGG | - | chr4_2:16990186-16990205 | Msa0591980:CDS | 30.0% | |
| GGTTCAAGAAAATACAAAAC+GGG | - | chr4_2:16990210-16990229 | Msa0591980:CDS | 30.0% | |
| GTTCAAGAAAATACAAAACG+GGG | - | chr4_2:16990211-16990230 | Msa0591980:CDS | 30.0% | |
| AAAAGAAACACTTGCAAAGA+AGG | - | chr4_2:16990255-16990274 | Msa0591980:intron | 30.0% | |
| AGGAAAGAATCATACTATCA+AGG | + | chr4_2:16990342-16990361 | None:intergenic | 30.0% | |
| AAAAGATAACTGACAAACCT+AGG | + | chr4_2:16990583-16990602 | None:intergenic | 30.0% | |
| ! | TTATCTTTTACCTAAGTCTG+TGG | - | chr4_2:16990594-16990613 | Msa0591980:CDS | 30.0% |
| !! | AAAAGTGTTGCTCATAATGT+TGG | + | chr4_2:16991069-16991088 | None:intergenic | 30.0% |
| ATGATTTATCATCACTTGTG+TGG | - | chr4_2:16991123-16991142 | Msa0591980:CDS | 30.0% | |
| TTCAGTTACCAAATGTAGTA+TGG | - | chr4_2:16989767-16989786 | Msa0591980:CDS | 30.0% | |
| ! | CTTCATGATAGAACTTTTTG+TGG | + | chr4_2:16990053-16990072 | None:intergenic | 30.0% |
| ATCATGAAGTCTATTGAATG+TGG | - | chr4_2:16990064-16990083 | Msa0591980:intron | 30.0% | |
| TCATGAAGTCTATTGAATGT+GGG | - | chr4_2:16990065-16990084 | Msa0591980:intron | 30.0% | |
| CATGTTGCAAGAATTAGAAA+CGG | - | chr4_2:16990145-16990164 | Msa0591980:intron | 30.0% | |
| ATATGAAAATGTTGGAAGCT+CGG | - | chr4_2:16990186-16990205 | Msa0591980:CDS | 30.0% | |
| GGTTCAAGAAAATACAAAAC+GGG | - | chr4_2:16990210-16990229 | Msa0591980:CDS | 30.0% | |
| GTTCAAGAAAATACAAAACG+GGG | - | chr4_2:16990211-16990230 | Msa0591980:CDS | 30.0% | |
| AAAAGAAACACTTGCAAAGA+AGG | - | chr4_2:16990255-16990274 | Msa0591980:intron | 30.0% | |
| AGGAAAGAATCATACTATCA+AGG | + | chr4_2:16990342-16990361 | None:intergenic | 30.0% | |
| AAAAGATAACTGACAAACCT+AGG | + | chr4_2:16990583-16990602 | None:intergenic | 30.0% | |
| ! | TTATCTTTTACCTAAGTCTG+TGG | - | chr4_2:16990594-16990613 | Msa0591980:CDS | 30.0% |
| !! | AAAAGTGTTGCTCATAATGT+TGG | + | chr4_2:16991069-16991088 | None:intergenic | 30.0% |
| ATGATTTATCATCACTTGTG+TGG | - | chr4_2:16991123-16991142 | Msa0591980:CDS | 30.0% | |
| !! | ATGATGGGTTATCAGTGAAA+CGG | + | chr4_2:16989558-16989577 | None:intergenic | 35.0% |
| ATCAGAAGCCATACTACATT+TGG | + | chr4_2:16989778-16989797 | None:intergenic | 35.0% | |
| CTTTCTTTCCAACATGTTGA+AGG | + | chr4_2:16989802-16989821 | None:intergenic | 35.0% | |
| CTTCAACATGTTGGAAAGAA+AGG | - | chr4_2:16989800-16989819 | Msa0591980:CDS | 35.0% | |
| AAGTCATAAACATCCATGTC+TGG | + | chr4_2:16989861-16989880 | None:intergenic | 35.0% | |
| ! | TGAGTTGTAGGGTAACATTT+TGG | + | chr4_2:16989887-16989906 | None:intergenic | 35.0% |
| CATGAAGTCTATTGAATGTG+GGG | - | chr4_2:16990066-16990085 | Msa0591980:intron | 35.0% | |
| TAAGCCTTTGGTTGAAAAAG+AGG | - | chr4_2:16990105-16990124 | Msa0591980:intron | 35.0% | |
| !!! | TTGACCTCTTTTTCAACCAA+AGG | + | chr4_2:16990112-16990131 | None:intergenic | 35.0% |
| AAAAAGAGGTCAAGATCATG+TGG | - | chr4_2:16990119-16990138 | Msa0591980:intron | 35.0% | |
| ! | CTTTGCAAGTGTTTCTTTTG+AGG | + | chr4_2:16990254-16990273 | None:intergenic | 35.0% |
| AAAATGAACCTGTAAATGGC+TGG | + | chr4_2:16990503-16990522 | None:intergenic | 35.0% | |
| TGATTTACAACCACAGACTT+AGG | + | chr4_2:16990607-16990626 | None:intergenic | 35.0% | |
| TGGAATAACATGCAAGACTA+AGG | + | chr4_2:16990645-16990664 | None:intergenic | 35.0% | |
| AGTAGTGAATTATGCAGTCA+TGG | - | chr4_2:16990681-16990700 | Msa0591980:intron | 35.0% | |
| AGAGGATGTATAGAAGCTAA+TGG | + | chr4_2:16990751-16990770 | None:intergenic | 35.0% | |
| TCAACATATGGGAACAAGTT+GGG | + | chr4_2:16991101-16991120 | None:intergenic | 35.0% | |
| ATCAACATATGGGAACAAGT+TGG | + | chr4_2:16991102-16991121 | None:intergenic | 35.0% | |
| !! | ATGATGGGTTATCAGTGAAA+CGG | + | chr4_2:16989558-16989577 | None:intergenic | 35.0% |
| ATCAGAAGCCATACTACATT+TGG | + | chr4_2:16989778-16989797 | None:intergenic | 35.0% | |
| CTTTCTTTCCAACATGTTGA+AGG | + | chr4_2:16989802-16989821 | None:intergenic | 35.0% | |
| CTTCAACATGTTGGAAAGAA+AGG | - | chr4_2:16989800-16989819 | Msa0591980:CDS | 35.0% | |
| AAGTCATAAACATCCATGTC+TGG | + | chr4_2:16989861-16989880 | None:intergenic | 35.0% | |
| ! | TGAGTTGTAGGGTAACATTT+TGG | + | chr4_2:16989887-16989906 | None:intergenic | 35.0% |
| CATGAAGTCTATTGAATGTG+GGG | - | chr4_2:16990066-16990085 | Msa0591980:intron | 35.0% | |
| TAAGCCTTTGGTTGAAAAAG+AGG | - | chr4_2:16990105-16990124 | Msa0591980:intron | 35.0% | |
| !!! | TTGACCTCTTTTTCAACCAA+AGG | + | chr4_2:16990112-16990131 | None:intergenic | 35.0% |
| AAAAAGAGGTCAAGATCATG+TGG | - | chr4_2:16990119-16990138 | Msa0591980:intron | 35.0% | |
| ! | CTTTGCAAGTGTTTCTTTTG+AGG | + | chr4_2:16990254-16990273 | None:intergenic | 35.0% |
| AAAATGAACCTGTAAATGGC+TGG | + | chr4_2:16990503-16990522 | None:intergenic | 35.0% | |
| TGATTTACAACCACAGACTT+AGG | + | chr4_2:16990607-16990626 | None:intergenic | 35.0% | |
| TGGAATAACATGCAAGACTA+AGG | + | chr4_2:16990645-16990664 | None:intergenic | 35.0% | |
| AGTAGTGAATTATGCAGTCA+TGG | - | chr4_2:16990681-16990700 | Msa0591980:intron | 35.0% | |
| AGAGGATGTATAGAAGCTAA+TGG | + | chr4_2:16990751-16990770 | None:intergenic | 35.0% | |
| TCAACATATGGGAACAAGTT+GGG | + | chr4_2:16991101-16991120 | None:intergenic | 35.0% | |
| ATCAACATATGGGAACAAGT+TGG | + | chr4_2:16991102-16991121 | None:intergenic | 35.0% | |
| !! | TGATGGGTTATCAGTGAAAC+GGG | + | chr4_2:16989557-16989576 | None:intergenic | 40.0% |
| AATTGCAATAACCTCGAGAC+CGG | + | chr4_2:16989587-16989606 | None:intergenic | 40.0% | |
| CACTTTCCTCAACTCTATTG+AGG | - | chr4_2:16989618-16989637 | Msa0591980:CDS | 40.0% | |
| ACATCTCCTCAATAGAGTTG+AGG | + | chr4_2:16989627-16989646 | None:intergenic | 40.0% | |
| TTCTGATGCCTTCAACATGT+TGG | - | chr4_2:16989791-16989810 | Msa0591980:CDS | 40.0% | |
| ! | GACAGGAATGTTGAGTTGTA+GGG | + | chr4_2:16989898-16989917 | None:intergenic | 40.0% |
| ! | TGACAGGAATGTTGAGTTGT+AGG | + | chr4_2:16989899-16989918 | None:intergenic | 40.0% |
| CGAATATTGGACTAAGCCTT+TGG | - | chr4_2:16990093-16990112 | Msa0591980:intron | 40.0% | |
| ATTCTCGTGACCAAGACAAA+CGG | + | chr4_2:16990282-16990301 | None:intergenic | 40.0% | |
| ACATATTGCCAGCCATTTAC+AGG | - | chr4_2:16990492-16990511 | Msa0591980:CDS | 40.0% | |
| ACCTAAGTCTATAGTTGCCT+AGG | - | chr4_2:16990563-16990582 | Msa0591980:CDS | 40.0% | |
| ACCTAGGCAACTATAGACTT+AGG | + | chr4_2:16990567-16990586 | None:intergenic | 40.0% | |
| AGCTCAACAGAAGAGACAAA+AGG | - | chr4_2:16990885-16990904 | Msa0591980:CDS | 40.0% | |
| CAACAGAAGAGACAAAAGGT+AGG | - | chr4_2:16990889-16990908 | Msa0591980:CDS | 40.0% | |
| CAGAATTCAGGAGAAAACTC+TGG | + | chr4_2:16990989-16991008 | None:intergenic | 40.0% | |
| !! | TGATGGGTTATCAGTGAAAC+GGG | + | chr4_2:16989557-16989576 | None:intergenic | 40.0% |
| AATTGCAATAACCTCGAGAC+CGG | + | chr4_2:16989587-16989606 | None:intergenic | 40.0% | |
| CACTTTCCTCAACTCTATTG+AGG | - | chr4_2:16989618-16989637 | Msa0591980:CDS | 40.0% | |
| ACATCTCCTCAATAGAGTTG+AGG | + | chr4_2:16989627-16989646 | None:intergenic | 40.0% | |
| TTCTGATGCCTTCAACATGT+TGG | - | chr4_2:16989791-16989810 | Msa0591980:CDS | 40.0% | |
| ! | GACAGGAATGTTGAGTTGTA+GGG | + | chr4_2:16989898-16989917 | None:intergenic | 40.0% |
| ! | TGACAGGAATGTTGAGTTGT+AGG | + | chr4_2:16989899-16989918 | None:intergenic | 40.0% |
| CGAATATTGGACTAAGCCTT+TGG | - | chr4_2:16990093-16990112 | Msa0591980:intron | 40.0% | |
| ATTCTCGTGACCAAGACAAA+CGG | + | chr4_2:16990282-16990301 | None:intergenic | 40.0% | |
| ACATATTGCCAGCCATTTAC+AGG | - | chr4_2:16990492-16990511 | Msa0591980:CDS | 40.0% | |
| ACCTAAGTCTATAGTTGCCT+AGG | - | chr4_2:16990563-16990582 | Msa0591980:CDS | 40.0% | |
| ACCTAGGCAACTATAGACTT+AGG | + | chr4_2:16990567-16990586 | None:intergenic | 40.0% | |
| AGCTCAACAGAAGAGACAAA+AGG | - | chr4_2:16990885-16990904 | Msa0591980:CDS | 40.0% | |
| CAACAGAAGAGACAAAAGGT+AGG | - | chr4_2:16990889-16990908 | Msa0591980:CDS | 40.0% | |
| CAGAATTCAGGAGAAAACTC+TGG | + | chr4_2:16990989-16991008 | None:intergenic | 40.0% | |
| TGATGCTCATATGCCAGACA+TGG | - | chr4_2:16989845-16989864 | Msa0591980:intron | 45.0% | |
| AATGTGGGGCTTGCGAATAT+TGG | - | chr4_2:16990080-16990099 | Msa0591980:intron | 45.0% | |
| TGAAAATGTTGGAAGCTCGG+TGG | - | chr4_2:16990189-16990208 | Msa0591980:CDS | 45.0% | |
| TTCTCGTGACCAAGACAAAC+GGG | + | chr4_2:16990281-16990300 | None:intergenic | 45.0% | |
| CTACGTGCAGTCAATCAACT+AGG | - | chr4_2:16990316-16990335 | Msa0591980:intron | 45.0% | |
| AGAAGCTACTCACTCAATGC+CGG | - | chr4_2:16990956-16990975 | Msa0591980:intron | 45.0% | |
| GACATTGTGTCGCAGAATTC+AGG | + | chr4_2:16991001-16991020 | None:intergenic | 45.0% | |
| ATTGCGATGCACAACGACAT+TGG | - | chr4_2:16991027-16991046 | Msa0591980:intron | 45.0% | |
| TTGCGATGCACAACGACATT+GGG | - | chr4_2:16991028-16991047 | Msa0591980:intron | 45.0% | |
| CAACGACATTGGGTGGAAAT+TGG | - | chr4_2:16991038-16991057 | Msa0591980:CDS | 45.0% | |
| TGATGCTCATATGCCAGACA+TGG | - | chr4_2:16989845-16989864 | Msa0591980:intron | 45.0% | |
| AATGTGGGGCTTGCGAATAT+TGG | - | chr4_2:16990080-16990099 | Msa0591980:intron | 45.0% | |
| TGAAAATGTTGGAAGCTCGG+TGG | - | chr4_2:16990189-16990208 | Msa0591980:CDS | 45.0% | |
| TTCTCGTGACCAAGACAAAC+GGG | + | chr4_2:16990281-16990300 | None:intergenic | 45.0% | |
| CTACGTGCAGTCAATCAACT+AGG | - | chr4_2:16990316-16990335 | Msa0591980:intron | 45.0% | |
| AGAAGCTACTCACTCAATGC+CGG | - | chr4_2:16990956-16990975 | Msa0591980:intron | 45.0% | |
| GACATTGTGTCGCAGAATTC+AGG | + | chr4_2:16991001-16991020 | None:intergenic | 45.0% | |
| ATTGCGATGCACAACGACAT+TGG | - | chr4_2:16991027-16991046 | Msa0591980:intron | 45.0% | |
| TTGCGATGCACAACGACATT+GGG | - | chr4_2:16991028-16991047 | Msa0591980:intron | 45.0% | |
| CAACGACATTGGGTGGAAAT+TGG | - | chr4_2:16991038-16991057 | Msa0591980:CDS | 45.0% | |
| GATAACCCATCATTCCCAGC+CGG | - | chr4_2:16989565-16989584 | Msa0591980:CDS | 50.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | - | chr4_2:16990269-16990288 | Msa0591980:intron | 50.0% | |
| AGAAAACTCTGGTCCTGCTC+CGG | + | chr4_2:16990978-16990997 | None:intergenic | 50.0% | |
| GATAACCCATCATTCCCAGC+CGG | - | chr4_2:16989565-16989584 | Msa0591980:CDS | 50.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | - | chr4_2:16990269-16990288 | Msa0591980:intron | 50.0% | |
| AGAAAACTCTGGTCCTGCTC+CGG | + | chr4_2:16990978-16990997 | None:intergenic | 50.0% | |
| CAATAACCTCGAGACCGGCT+GGG | + | chr4_2:16989582-16989601 | None:intergenic | 55.0% | |
| TACTCACTCAATGCCGGAGC+AGG | - | chr4_2:16990962-16990981 | Msa0591980:intron | 55.0% | |
| CGATGCACAACGACATTGGG+TGG | - | chr4_2:16991031-16991050 | Msa0591980:CDS | 55.0% | |
| CAATAACCTCGAGACCGGCT+GGG | + | chr4_2:16989582-16989601 | None:intergenic | 55.0% | |
| TACTCACTCAATGCCGGAGC+AGG | - | chr4_2:16990962-16990981 | Msa0591980:intron | 55.0% | |
| CGATGCACAACGACATTGGG+TGG | - | chr4_2:16991031-16991050 | Msa0591980:CDS | 55.0% | |
| CGAGACCGGCTGGGAATGAT+GGG | + | chr4_2:16989573-16989592 | None:intergenic | 60.0% | |
| TCGAGACCGGCTGGGAATGA+TGG | + | chr4_2:16989574-16989593 | None:intergenic | 60.0% | |
| ATCATTCCCAGCCGGTCTCG+AGG | - | chr4_2:16989573-16989592 | Msa0591980:CDS | 60.0% | |
| GCAATAACCTCGAGACCGGC+TGG | + | chr4_2:16989583-16989602 | None:intergenic | 60.0% | |
| CGAGACCGGCTGGGAATGAT+GGG | + | chr4_2:16989573-16989592 | None:intergenic | 60.0% | |
| TCGAGACCGGCTGGGAATGA+TGG | + | chr4_2:16989574-16989593 | None:intergenic | 60.0% | |
| ATCATTCCCAGCCGGTCTCG+AGG | - | chr4_2:16989573-16989592 | Msa0591980:CDS | 60.0% | |
| GCAATAACCTCGAGACCGGC+TGG | + | chr4_2:16989583-16989602 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 16989550 | 16991148 | 16989550 | ID=Msa0591980;Name=Msa0591980 |
| chr4_2 | mRNA | 16989550 | 16991148 | 16989550 | ID=Msa0591980-mRNA-1;Parent=Msa0591980;Name=Msa0591980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|5|0|313 |
| chr4_2 | exon | 16991031 | 16991148 | 16991031 | ID=Msa0591980-mRNA-1:exon:4925;Parent=Msa0591980-mRNA-1 |
| chr4_2 | exon | 16990777 | 16990926 | 16990777 | ID=Msa0591980-mRNA-1:exon:4924;Parent=Msa0591980-mRNA-1 |
| chr4_2 | exon | 16990352 | 16990663 | 16990352 | ID=Msa0591980-mRNA-1:exon:4923;Parent=Msa0591980-mRNA-1 |
| chr4_2 | exon | 16990185 | 16990261 | 16990185 | ID=Msa0591980-mRNA-1:exon:4922;Parent=Msa0591980-mRNA-1 |
| chr4_2 | exon | 16989550 | 16989834 | 16989550 | ID=Msa0591980-mRNA-1:exon:4921;Parent=Msa0591980-mRNA-1 |
| chr4_2 | CDS | 16991031 | 16991148 | 16991031 | ID=Msa0591980-mRNA-1:cds;Parent=Msa0591980-mRNA-1 |
| chr4_2 | CDS | 16990777 | 16990926 | 16990777 | ID=Msa0591980-mRNA-1:cds;Parent=Msa0591980-mRNA-1 |
| chr4_2 | CDS | 16990352 | 16990663 | 16990352 | ID=Msa0591980-mRNA-1:cds;Parent=Msa0591980-mRNA-1 |
| chr4_2 | CDS | 16990185 | 16990261 | 16990185 | ID=Msa0591980-mRNA-1:cds;Parent=Msa0591980-mRNA-1 |
| chr4_2 | CDS | 16989550 | 16989834 | 16989550 | ID=Msa0591980-mRNA-1:cds;Parent=Msa0591980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
