Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0591990 | XP_013455021.2 | 70.498 | 261 | 55 | 1 | 1 | 239 | 1 | 261 | 1.40e-115 | 355 |
Msa0591990 | XP_013455021.2 | 80.707 | 311 | 36 | 2 | 259 | 547 | 3 | 311 | 1.50e-176 | 510 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0591990 | sp|Q8L9Y3|ARR14_ARATH | 35.115 | 262 | 107 | 7 | 263 | 465 | 4 | 261 | 4.48e-40 | 152 |
Msa0591990 | sp|Q8L9Y3|ARR14_ARATH | 42.667 | 150 | 82 | 3 | 7 | 154 | 4 | 151 | 6.32e-31 | 127 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0591990 | A0A396I0H3 | 64.504 | 262 | 70 | 2 | 1 | 239 | 1 | 262 | 1.64e-102 | 321 |
Msa0591990 | A0A396I0H3 | 76.282 | 312 | 49 | 3 | 259 | 547 | 3 | 312 | 7.64e-165 | 479 |
Gene ID | Type | Classification |
---|---|---|
Msa0591990 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0591990 | MtrunA17_Chr4g0009851 | 76.282 | 312 | 49 | 3 | 259 | 547 | 3 | 312 | 1.47e-168 | 479 |
Msa0591990 | MtrunA17_Chr4g0009851 | 64.504 | 262 | 70 | 2 | 1 | 239 | 1 | 262 | 3.16e-106 | 321 |
Msa0591990 | MtrunA17_Chr4g0009981 | 77.778 | 261 | 34 | 2 | 309 | 547 | 1 | 259 | 1.12e-141 | 409 |
Msa0591990 | MtrunA17_Chr4g0009981 | 64.593 | 209 | 52 | 1 | 53 | 239 | 1 | 209 | 1.49e-79 | 250 |
Msa0591990 | MtrunA17_Chr4g0009901 | 75.954 | 262 | 41 | 1 | 1 | 240 | 1 | 262 | 6.07e-136 | 395 |
Msa0591990 | MtrunA17_Chr4g0009901 | 70.711 | 239 | 46 | 2 | 260 | 476 | 4 | 240 | 6.39e-107 | 321 |
Msa0591990 | MtrunA17_Chr4g0011071 | 77.119 | 118 | 25 | 1 | 311 | 428 | 35 | 150 | 2.53e-56 | 186 |
Msa0591990 | MtrunA17_Chr4g0011071 | 73.451 | 113 | 30 | 0 | 58 | 170 | 38 | 150 | 8.50e-54 | 180 |
Msa0591990 | MtrunA17_Chr4g0010001 | 89.535 | 86 | 9 | 0 | 260 | 345 | 4 | 89 | 5.26e-51 | 169 |
Msa0591990 | MtrunA17_Chr4g0010001 | 83.146 | 89 | 15 | 0 | 1 | 89 | 1 | 89 | 1.69e-48 | 162 |
Msa0591990 | MtrunA17_Chr6g0471041 | 41.237 | 291 | 134 | 9 | 266 | 530 | 14 | 293 | 2.60e-50 | 178 |
Msa0591990 | MtrunA17_Chr6g0471041 | 40.336 | 238 | 113 | 6 | 10 | 225 | 14 | 244 | 8.08e-41 | 152 |
Msa0591990 | MtrunA17_Chr5g0423031 | 85.393 | 89 | 13 | 0 | 1 | 89 | 1 | 89 | 2.58e-48 | 166 |
Msa0591990 | MtrunA17_Chr5g0423031 | 86.207 | 87 | 12 | 0 | 259 | 345 | 3 | 89 | 1.42e-46 | 161 |
Msa0591990 | MtrunA17_Chr5g0423031 | 52.326 | 86 | 41 | 0 | 159 | 244 | 79 | 164 | 9.01e-15 | 72.8 |
Msa0591990 | MtrunA17_Chr1g0161431 | 39.113 | 248 | 96 | 5 | 266 | 460 | 11 | 256 | 1.04e-47 | 175 |
Msa0591990 | MtrunA17_Chr1g0161431 | 39.676 | 247 | 96 | 5 | 10 | 203 | 11 | 257 | 8.42e-47 | 173 |
Msa0591990 | MtrunA17_Chr4g0009991 | 70.940 | 117 | 11 | 2 | 101 | 195 | 1 | 116 | 1.99e-45 | 155 |
Msa0591990 | MtrunA17_Chr4g0009991 | 63.025 | 119 | 19 | 3 | 357 | 453 | 1 | 116 | 3.02e-36 | 131 |
Msa0591990 | MtrunA17_Chr8g0383961 | 41.860 | 258 | 120 | 8 | 257 | 499 | 5 | 247 | 3.17e-44 | 157 |
Msa0591990 | MtrunA17_Chr8g0383961 | 42.922 | 219 | 102 | 6 | 1 | 207 | 1 | 208 | 2.05e-41 | 150 |
Msa0591990 | MtrunA17_Chr8g0391911 | 35.950 | 242 | 105 | 4 | 260 | 453 | 3 | 242 | 2.14e-40 | 147 |
Msa0591990 | MtrunA17_Chr8g0391911 | 35.628 | 247 | 111 | 3 | 10 | 208 | 9 | 255 | 1.40e-39 | 144 |
Msa0591990 | MtrunA17_Chr8g0376881 | 36.187 | 257 | 112 | 6 | 265 | 473 | 24 | 276 | 5.74e-40 | 152 |
Msa0591990 | MtrunA17_Chr8g0376881 | 34.156 | 243 | 112 | 4 | 9 | 203 | 24 | 266 | 1.69e-35 | 139 |
Msa0591990 | MtrunA17_Chr3g0123131 | 36.475 | 244 | 103 | 5 | 266 | 459 | 13 | 254 | 6.61e-40 | 152 |
Msa0591990 | MtrunA17_Chr3g0123131 | 34.836 | 244 | 109 | 4 | 10 | 203 | 13 | 256 | 7.80e-37 | 144 |
Msa0591990 | MtrunA17_Chr4g0067981 | 36.214 | 243 | 105 | 4 | 266 | 460 | 31 | 271 | 2.22e-39 | 152 |
Msa0591990 | MtrunA17_Chr4g0067981 | 35.656 | 244 | 105 | 3 | 10 | 203 | 31 | 272 | 2.23e-38 | 149 |
Msa0591990 | MtrunA17_Chr6g0456631 | 43.750 | 160 | 86 | 2 | 260 | 417 | 3 | 160 | 7.20e-39 | 140 |
Msa0591990 | MtrunA17_Chr6g0456631 | 44.079 | 152 | 83 | 1 | 10 | 159 | 9 | 160 | 8.86e-38 | 137 |
Msa0591990 | MtrunA17_Chr2g0294911 | 34.586 | 266 | 124 | 5 | 266 | 483 | 29 | 292 | 1.97e-38 | 149 |
Msa0591990 | MtrunA17_Chr2g0294911 | 34.109 | 258 | 121 | 3 | 10 | 221 | 29 | 283 | 3.51e-38 | 148 |
Msa0591990 | MtrunA17_Chr1g0149841 | 35.271 | 258 | 117 | 6 | 263 | 470 | 2 | 259 | 8.06e-36 | 140 |
Msa0591990 | MtrunA17_Chr1g0149841 | 32.794 | 247 | 116 | 4 | 7 | 203 | 2 | 248 | 2.00e-29 | 121 |
Msa0591990 | MtrunA17_Chr7g0275401 | 33.594 | 256 | 115 | 5 | 263 | 466 | 2 | 254 | 1.20e-33 | 129 |
Msa0591990 | MtrunA17_Chr7g0275401 | 31.200 | 250 | 121 | 5 | 7 | 205 | 2 | 251 | 1.51e-27 | 112 |
Msa0591990 | MtrunA17_Chr3g0137101 | 32.389 | 247 | 115 | 4 | 266 | 460 | 8 | 254 | 2.15e-31 | 129 |
Msa0591990 | MtrunA17_Chr3g0137101 | 33.468 | 248 | 111 | 5 | 10 | 203 | 8 | 255 | 6.09e-29 | 121 |
Msa0591990 | MtrunA17_Chr2g0304841 | 29.804 | 255 | 122 | 4 | 266 | 463 | 18 | 272 | 3.05e-29 | 122 |
Msa0591990 | MtrunA17_Chr2g0304841 | 29.134 | 254 | 121 | 5 | 10 | 204 | 18 | 271 | 1.08e-25 | 111 |
Msa0591990 | MtrunA17_Chr4g0074411 | 30.522 | 249 | 126 | 5 | 265 | 467 | 17 | 264 | 1.66e-28 | 119 |
Msa0591990 | MtrunA17_Chr4g0074411 | 31.048 | 248 | 124 | 5 | 9 | 209 | 17 | 264 | 4.76e-28 | 118 |
Msa0591990 | MtrunA17_Chr3g0134481 | 35.323 | 201 | 108 | 6 | 258 | 455 | 2 | 183 | 3.23e-28 | 111 |
Msa0591990 | MtrunA17_Chr3g0134481 | 34.392 | 189 | 110 | 4 | 10 | 197 | 8 | 183 | 4.23e-25 | 102 |
Msa0591990 | MtrunA17_Chr4g0074401 | 29.084 | 251 | 128 | 5 | 266 | 467 | 17 | 266 | 7.15e-28 | 117 |
Msa0591990 | MtrunA17_Chr4g0074401 | 30.800 | 250 | 123 | 5 | 10 | 209 | 17 | 266 | 1.66e-27 | 116 |
Msa0591990 | MtrunA17_Chr7g0275891 | 41.270 | 126 | 72 | 1 | 263 | 386 | 2 | 127 | 9.28e-28 | 114 |
Msa0591990 | MtrunA17_Chr7g0275891 | 29.008 | 262 | 117 | 5 | 7 | 202 | 2 | 260 | 8.96e-27 | 111 |
Msa0591990 | MtrunA17_Chr1g0149851 | 43.200 | 125 | 70 | 1 | 263 | 386 | 2 | 126 | 3.23e-27 | 115 |
Msa0591990 | MtrunA17_Chr1g0149851 | 40.152 | 132 | 78 | 1 | 7 | 137 | 2 | 133 | 1.04e-24 | 107 |
Msa0591990 | MtrunA17_Chr3g0134461 | 33.679 | 193 | 115 | 4 | 266 | 453 | 8 | 192 | 5.70e-24 | 99.8 |
Msa0591990 | MtrunA17_Chr3g0134461 | 30.732 | 205 | 103 | 5 | 10 | 195 | 8 | 192 | 1.30e-19 | 87.0 |
Msa0591990 | MtrunA17_Chr1g0149831 | 32.124 | 193 | 85 | 4 | 324 | 470 | 1 | 193 | 1.12e-20 | 91.3 |
Msa0591990 | MtrunA17_Chr1g0149831 | 30.220 | 182 | 81 | 3 | 68 | 203 | 1 | 182 | 4.96e-16 | 77.8 |
Msa0591990 | MtrunA17_Chr4g0074421 | 30.220 | 182 | 83 | 4 | 315 | 453 | 2 | 182 | 9.11e-20 | 87.8 |
Msa0591990 | MtrunA17_Chr4g0074421 | 30.939 | 181 | 81 | 4 | 59 | 195 | 2 | 182 | 5.63e-18 | 82.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0591990 | AT2G01760.1 | 35.115 | 262 | 107 | 7 | 263 | 465 | 4 | 261 | 4.56e-41 | 152 |
Msa0591990 | AT2G01760.1 | 42.667 | 150 | 82 | 3 | 7 | 154 | 4 | 151 | 6.43e-32 | 127 |
Msa0591990 | AT1G67710.1 | 34.457 | 267 | 117 | 6 | 267 | 477 | 8 | 272 | 5.51e-39 | 149 |
Msa0591990 | AT1G67710.1 | 34.836 | 244 | 108 | 4 | 11 | 203 | 8 | 251 | 4.74e-34 | 135 |
Msa0591990 | AT2G01760.2 | 31.724 | 290 | 107 | 8 | 263 | 465 | 4 | 289 | 1.41e-35 | 138 |
Msa0591990 | AT2G01760.2 | 35.955 | 178 | 82 | 4 | 7 | 154 | 4 | 179 | 1.98e-26 | 112 |
Msa0591990 | AT4G31920.1 | 32.129 | 249 | 134 | 4 | 266 | 482 | 13 | 258 | 7.66e-34 | 135 |
Msa0591990 | AT4G31920.1 | 33.476 | 233 | 121 | 5 | 10 | 208 | 13 | 245 | 7.99e-30 | 124 |
Msa0591990 | AT2G25180.1 | 33.745 | 243 | 109 | 4 | 266 | 460 | 13 | 251 | 6.05e-32 | 130 |
Msa0591990 | AT2G25180.1 | 32.787 | 244 | 110 | 4 | 10 | 203 | 13 | 252 | 3.35e-28 | 119 |
Msa0591990 | AT3G16857.1 | 43.548 | 124 | 69 | 1 | 266 | 388 | 33 | 156 | 4.64e-28 | 119 |
Msa0591990 | AT3G16857.1 | 42.336 | 137 | 78 | 1 | 10 | 145 | 33 | 169 | 8.99e-28 | 118 |
Msa0591990 | AT3G16857.2 | 43.548 | 124 | 69 | 1 | 266 | 388 | 33 | 156 | 4.69e-28 | 119 |
Msa0591990 | AT3G16857.2 | 42.336 | 137 | 78 | 1 | 10 | 145 | 33 | 169 | 9.77e-28 | 118 |
Msa0591990 | AT5G58080.1 | 32.530 | 249 | 122 | 6 | 266 | 470 | 14 | 260 | 5.10e-25 | 109 |
Msa0591990 | AT5G58080.1 | 31.538 | 260 | 122 | 9 | 10 | 221 | 14 | 265 | 1.52e-21 | 99.0 |
Msa0591990 | AT1G67710.2 | 32.057 | 209 | 85 | 5 | 324 | 477 | 1 | 207 | 1.01e-22 | 101 |
Msa0591990 | AT1G67710.2 | 32.258 | 186 | 76 | 4 | 68 | 203 | 1 | 186 | 2.04e-18 | 88.6 |
Msa0591990 | AT2G01760.3 | 31.500 | 200 | 75 | 6 | 324 | 465 | 1 | 196 | 4.09e-22 | 97.8 |
Msa0591990 | AT2G01760.3 | 39.773 | 88 | 50 | 2 | 68 | 154 | 1 | 86 | 7.65e-14 | 73.2 |
Msa0591990 | AT5G49240.1 | 27.160 | 243 | 128 | 7 | 258 | 453 | 32 | 272 | 3.89e-20 | 91.3 |
Msa0591990 | AT5G49240.1 | 30.894 | 123 | 84 | 1 | 9 | 130 | 37 | 159 | 6.62e-16 | 79.0 |
Msa0591990 | AT1G49190.1 | 23.939 | 330 | 188 | 8 | 266 | 539 | 30 | 352 | 8.63e-19 | 89.4 |
Msa0591990 | AT1G49190.1 | 25.468 | 267 | 140 | 8 | 10 | 221 | 30 | 292 | 2.17e-18 | 87.8 |
Msa0591990 | AT3G62670.1 | 27.477 | 222 | 116 | 6 | 28 | 204 | 53 | 274 | 1.78e-18 | 88.6 |
Msa0591990 | AT3G62670.1 | 25.926 | 216 | 117 | 5 | 284 | 456 | 53 | 268 | 1.63e-17 | 85.5 |
Msa0591990 | AT1G49190.2 | 33.871 | 124 | 81 | 1 | 266 | 388 | 30 | 153 | 2.77e-18 | 89.0 |
Msa0591990 | AT1G49190.2 | 33.871 | 124 | 77 | 2 | 10 | 130 | 30 | 151 | 4.30e-17 | 85.1 |
Msa0591990 | AT3G16857.3 | 42.353 | 85 | 48 | 1 | 305 | 388 | 2 | 86 | 4.40e-17 | 85.1 |
Msa0591990 | AT3G16857.3 | 40.816 | 98 | 57 | 1 | 49 | 145 | 2 | 99 | 6.53e-17 | 84.3 |
Msa0591990 | AT1G68210.1 | 29.231 | 130 | 90 | 2 | 14 | 142 | 13 | 141 | 2.20e-11 | 67.0 |
Find 100 sgRNAs with CRISPR-Local
Find 463 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAAATGATTCTCAAAATTA+TGG | 0.243357 | 4_2:-17037148 | Msa0591990:CDS |
TGCTAAAACTAACCTGTAAA+TGG | 0.277475 | 4_2:+17030278 | None:intergenic |
ACATGTTGCCAGCCATTTAC+AGG | 0.283862 | 4_2:-17030290 | Msa0591990:intron |
ACATGTTGCTAGTCATTTAC+AGG | 0.286115 | 4_2:-17037103 | Msa0591990:intron |
GACATTGTGTGGTCGAATTC+AGG | 0.320772 | 4_2:+17029766 | None:intergenic |
CTTGAATTTGTTGGAAAGAA+AGG | 0.326280 | 4_2:-17030988 | Msa0591990:CDS |
CTCAAAATTATGGATGTTCC+AGG | 0.335551 | 4_2:-17037138 | Msa0591990:CDS |
AATTATGGATGTTCCAGGTT+TGG | 0.345656 | 4_2:-17037133 | Msa0591990:CDS |
ATTATGGATGTTCCAGGTTT+GGG | 0.349053 | 4_2:-17037132 | Msa0591990:CDS |
CTTGAATTTGTTGGAAAGAA+TGG | 0.358508 | 4_2:-17037763 | Msa0591990:CDS |
TTCTGATGCCTTGAATTTGT+TGG | 0.373586 | 4_2:-17030997 | Msa0591990:CDS |
TTCTGATGCCTTGAATTTGT+TGG | 0.373586 | 4_2:-17037772 | Msa0591990:CDS |
TGAGTTGTAGGGTAACATTT+TGG | 0.376494 | 4_2:+17030904 | None:intergenic |
AAAGTGACTAACCTTGATAA+TGG | 0.378712 | 4_2:+17037930 | None:intergenic |
GATAAATCATCATCAACATA+TGG | 0.380393 | 4_2:+17029654 | None:intergenic |
AATGTGGGGCTTGCGAATAT+TGG | 0.385194 | 4_2:-17030704 | Msa0591990:CDS |
TACATATTGGACTAAGCCTT+TGG | 0.386876 | 4_2:-17037495 | Msa0591990:CDS |
CGAATATTGGACTAAGCCTT+TGG | 0.392176 | 4_2:-17030691 | Msa0591990:CDS |
CTTTCTTTCCAACAAATTCA+AGG | 0.396613 | 4_2:+17030989 | None:intergenic |
ATCAGAAGCTGTATTGCATT+TGG | 0.403201 | 4_2:+17031013 | None:intergenic |
TGACAGGAATGTTGAGTTGT+AGG | 0.408636 | 4_2:+17030892 | None:intergenic |
ATCAGAAGCTGTGTTACATT+TGG | 0.412873 | 4_2:+17037788 | None:intergenic |
AATGTGGGGCTTGTACATAT+TGG | 0.414028 | 4_2:-17037508 | Msa0591990:CDS |
AATAAAGAATATGAAATTGT+TGG | 0.416766 | 4_2:-17030606 | Msa0591990:CDS |
AATAAAGAATATGAAATTGT+TGG | 0.416766 | 4_2:-17037416 | Msa0591990:CDS |
CAGTTTGAAAGTTATCGTTC+TGG | 0.417272 | 4_2:+17036820 | None:intergenic |
GGTTCAAGAAAATAGAAAAC+GGG | 0.418887 | 4_2:-17037384 | Msa0591990:CDS |
CATTCTTTCCAACAAATTCA+AGG | 0.419108 | 4_2:+17037764 | None:intergenic |
AATGTCGTTTGCAGAAATAT+AGG | 0.426550 | 4_2:-17036974 | Msa0591990:intron |
ACGCTAAATTGTGTTTCAAA+AGG | 0.431875 | 4_2:+17029831 | None:intergenic |
AAAAGAAACACTTGCAAAGA+AGG | 0.435703 | 4_2:-17030529 | Msa0591990:CDS |
TGTAATCGATTCCATTATCA+AGG | 0.450836 | 4_2:-17037941 | Msa0591990:intron |
TTGAGACCGGCTGGGAATGA+TGG | 0.453544 | 4_2:+17031245 | None:intergenic |
TCAAACTGAGCTGACTGATC+AGG | 0.459166 | 4_2:-17036805 | Msa0591990:CDS |
AATAAATTCTTACTAATGAC+AGG | 0.461511 | 4_2:+17030876 | None:intergenic |
AATAAATTCTTACTAATGAC+AGG | 0.461511 | 4_2:+17037651 | None:intergenic |
ATATGAAATTGTTGGAAGCT+TGG | 0.461542 | 4_2:-17037408 | Msa0591990:CDS |
TGTAATCGATATCATTATCA+AGG | 0.463829 | 4_2:-17031170 | Msa0591990:intron |
AAGTCATAAACATCCATGTT+TGG | 0.465091 | 4_2:+17030930 | None:intergenic |
TTGAGACCAGCAGGGAATGA+TGG | 0.467536 | 4_2:+17038016 | None:intergenic |
TCAACATATGGGAACAAGTT+GGG | 0.468173 | 4_2:+17029666 | None:intergenic |
AAGTCATAAGCATCCATGTT+TGG | 0.471983 | 4_2:+17037705 | None:intergenic |
TACTCACTCAATGCCGGAGC+AGG | 0.473606 | 4_2:-17029802 | Msa0591990:CDS |
GCAATAACCTTGAGACCGGC+TGG | 0.475576 | 4_2:+17031236 | None:intergenic |
AAAAGAAACACATGCAAAGA+AGG | 0.478150 | 4_2:-17037339 | Msa0591990:CDS |
CACTTTCCTCAACTCTATTG+AGG | 0.492388 | 4_2:-17037969 | Msa0591990:CDS |
CAGCTAGAAAACCATCATTC+CGG | 0.492887 | 4_2:+17036781 | None:intergenic |
GCAATAACCTTGAGACCAGC+AGG | 0.494358 | 4_2:+17038007 | None:intergenic |
GATGTTCCAGGTTTGGGTGT+AGG | 0.505057 | 4_2:-17037126 | Msa0591990:CDS |
TAGGATTCATTTGAAGAGAT+CGG | 0.515087 | 4_2:-17036955 | Msa0591990:CDS |
ATATGAAATTGTTGGAAGCT+CGG | 0.515274 | 4_2:-17030598 | Msa0591990:CDS |
TGGTTCAAGAAAATAGAAAA+CGG | 0.517102 | 4_2:-17037385 | Msa0591990:CDS |
GACAGGAATGTTGAGTTGTA+GGG | 0.519779 | 4_2:+17030893 | None:intergenic |
ATCATTCCCTGCTGGTCTCA+AGG | 0.520371 | 4_2:-17038014 | Msa0591990:CDS |
ACTGATCAGGACCGGAATGA+TGG | 0.523712 | 4_2:-17036792 | Msa0591990:intron |
TTATGAAGTCTATTCAATGT+GGG | 0.525603 | 4_2:-17037523 | Msa0591990:CDS |
ATCATGAAGTCTATTGAATG+TGG | 0.526495 | 4_2:-17030720 | Msa0591990:CDS |
TCAAACTCAATCGATCGATC+AGG | 0.527821 | 4_2:-17036844 | Msa0591990:CDS |
ACATGTCCTACACCCAAACC+TGG | 0.534820 | 4_2:+17037120 | None:intergenic |
AAAACTAACCTGTAAATGGC+TGG | 0.535893 | 4_2:+17030282 | None:intergenic |
TTGACGTCTTCTTCAACCAA+AGG | 0.537631 | 4_2:+17037479 | None:intergenic |
GACAACCCATCATTCCCTGC+TGG | 0.539365 | 4_2:-17038022 | Msa0591990:CDS |
TGAGACCAGCAGGGAATGAT+GGG | 0.539790 | 4_2:+17038017 | None:intergenic |
CGACACACGACAACAATGGA+TGG | 0.540785 | 4_2:-17029733 | Msa0591990:CDS |
TGGCAACATGTTGTCAGAAA+CGG | 0.543020 | 4_2:-17037449 | Msa0591990:CDS |
CACTGTCCTCAACTCTATTG+AGG | 0.546156 | 4_2:-17031198 | Msa0591990:CDS |
ATAAATCATCATCAACATAT+GGG | 0.548211 | 4_2:+17029655 | None:intergenic |
AGAAAACTCTGGTCCTGCTC+CGG | 0.548712 | 4_2:+17029789 | None:intergenic |
TCATGAAGTCTATTGAATGT+GGG | 0.549366 | 4_2:-17030719 | Msa0591990:CDS |
ATCATTCCCAGCCGGTCTCA+AGG | 0.552068 | 4_2:-17031243 | Msa0591990:CDS |
ATTATGAAGTCTATTCAATG+TGG | 0.558796 | 4_2:-17037524 | Msa0591990:CDS |
ATTGACAAGGTTCATAGTGA+TGG | 0.561362 | 4_2:-17036870 | Msa0591990:CDS |
ATCAACATATGGGAACAAGT+TGG | 0.563419 | 4_2:+17029665 | None:intergenic |
CTGAGCTGACTGATCAGGAC+CGG | 0.566450 | 4_2:-17036800 | Msa0591990:CDS |
AGAAGCTACTCACTCAATGC+CGG | 0.575449 | 4_2:-17029808 | Msa0591990:CDS |
TGAGACCGGCTGGGAATGAT+GGG | 0.577892 | 4_2:+17031246 | None:intergenic |
AATTGCAATAACCTTGAGAC+CGG | 0.581075 | 4_2:+17031232 | None:intergenic |
GAAAGTGATGTCATGATCAA+TGG | 0.586165 | 4_2:+17037985 | None:intergenic |
TGAAATTGTTGGAAGCTTGG+TGG | 0.586185 | 4_2:-17037405 | Msa0591990:CDS |
CTTCATGATAGAACTTGCTG+TGG | 0.588533 | 4_2:+17030734 | None:intergenic |
TCAAGACGAGTGCATTGACA+AGG | 0.590781 | 4_2:-17036883 | Msa0591990:CDS |
TGATGCTCATATGCCAAACA+TGG | 0.604750 | 4_2:-17030943 | Msa0591990:CDS |
TGATGCTCATATGCCAAACA+TGG | 0.604750 | 4_2:-17037718 | Msa0591990:CDS |
CATGAAGTCTATTGAATGTG+GGG | 0.606058 | 4_2:-17030718 | Msa0591990:CDS |
ATTGCGACACACGACAACAA+TGG | 0.611832 | 4_2:-17029737 | Msa0591990:CDS |
CAATAACCTTGAGACCGGCT+GGG | 0.613963 | 4_2:+17031237 | None:intergenic |
TATGAAGTCTATTCAATGTG+GGG | 0.614025 | 4_2:-17037522 | Msa0591990:CDS |
GACAACCCATCATTCCCAGC+CGG | 0.620153 | 4_2:-17031251 | Msa0591990:CDS |
ACATCTCCTCAATAGAGTTG+AGG | 0.625514 | 4_2:+17037963 | None:intergenic |
TCGAATTCAGGAGAAAACTC+TGG | 0.627173 | 4_2:+17029778 | None:intergenic |
TCTTACTACATGTTGCCACA+TGG | 0.630006 | 4_2:+17030650 | None:intergenic |
ACATCTCCTCAATAGAGTTG+AGG | 0.637933 | 4_2:+17031192 | None:intergenic |
AAGAAGACGTCAAGAGCATG+TGG | 0.649026 | 4_2:-17037469 | Msa0591990:CDS |
GCAATTGTCATGACATTGTG+TGG | 0.655655 | 4_2:+17029755 | None:intergenic |
TGAAATTGTTGGAAGCTCGG+TGG | 0.670504 | 4_2:-17030595 | Msa0591990:CDS |
CGGCTGATGAAACAAAACGT+GGG | 0.694912 | 4_2:-17036935 | Msa0591990:CDS |
ATGATTTATCATCACTTGTG+TGG | 0.696325 | 4_2:-17029641 | Msa0591990:CDS |
CAATAACCTTGAGACCAGCA+GGG | 0.699486 | 4_2:+17038008 | None:intergenic |
TCGGCTGATGAAACAAAACG+TGG | 0.707531 | 4_2:-17036936 | Msa0591990:CDS |
GTTCAAGAAAATAGAAAACG+GGG | 0.742093 | 4_2:-17037383 | Msa0591990:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTTAAAATATTATTACC+AGG | - | chr4_2:17032824-17032843 | Msa0591990:intron | 10.0% |
!!! | AGTTTTCAAAAAAAAAATAT+CGG | + | chr4_2:17035381-17035400 | None:intergenic | 10.0% |
!!! | ATATTTTTTTTTTGAAAACT+CGG | - | chr4_2:17035381-17035400 | Msa0591990:intron | 10.0% |
!! | AATAAAGAATATGAAATTGT+TGG | - | chr4_2:17030259-17030278 | Msa0591990:intron | 15.0% |
!!! | ATAATTTTGAGAATCATTTT+GGG | + | chr4_2:17030528-17030547 | None:intergenic | 15.0% |
!! | TTAAATTTAAACTGCATATT+AGG | + | chr4_2:17030965-17030984 | None:intergenic | 15.0% |
!!! | AAATAAAAACTAGCAATTTT+TGG | + | chr4_2:17030989-17031008 | None:intergenic | 15.0% |
!! | TTAAAAGATATTATTCATTC+AGG | + | chr4_2:17032747-17032766 | None:intergenic | 15.0% |
!! | ACACAATAATTTATGATTAA+TGG | - | chr4_2:17033201-17033220 | Msa0591990:intron | 15.0% |
!! | TTTCATAATTAATTCTAACT+TGG | - | chr4_2:17033372-17033391 | Msa0591990:intron | 15.0% |
!! | TTCATAATTAATTCTAACTT+GGG | - | chr4_2:17033373-17033392 | Msa0591990:intron | 15.0% |
!!! | ATTATTAGTAGCTATTTTAT+TGG | - | chr4_2:17035749-17035768 | Msa0591990:intron | 15.0% |
!! | AGTAAACAGATATATTTATA+GGG | + | chr4_2:17036068-17036087 | None:intergenic | 15.0% |
!! | AAGTAAACAGATATATTTAT+AGG | + | chr4_2:17036069-17036088 | None:intergenic | 15.0% |
!! | AATAAAGAATATGAAATTGT+TGG | - | chr4_2:17030259-17030278 | Msa0591990:intron | 15.0% |
!! | CATATAGTAAAAAAGTAATT+AGG | + | chr4_2:17037253-17037272 | None:intergenic | 15.0% |
!!! | TGATTTTAAACTGAAATTTA+TGG | - | chr4_2:17037707-17037726 | Msa0591990:CDS | 15.0% |
!! | AATAAATTCTTACTAATGAC+AGG | + | chr4_2:17030027-17030046 | None:intergenic | 20.0% |
!!! | TTATTTCTTTTTTGTAGTGA+TGG | - | chr4_2:17030105-17030124 | Msa0591990:intron | 20.0% |
!!! | CATAATTTTGAGAATCATTT+TGG | + | chr4_2:17030529-17030548 | None:intergenic | 20.0% |
!! | CAAAATGATTCTCAAAATTA+TGG | - | chr4_2:17030527-17030546 | Msa0591990:CDS | 20.0% |
!! | TAGAAATGCCAAAATAAAAA+AGG | + | chr4_2:17031092-17031111 | None:intergenic | 20.0% |
!! | CTTTATATTGTATTCCTTTA+AGG | - | chr4_2:17031145-17031164 | Msa0591990:intron | 20.0% |
!!! | TATTATAACTTTAGAAACTC+AGG | - | chr4_2:17031316-17031335 | Msa0591990:intron | 20.0% |
!! | TGAGAAATATATTTACTATC+AGG | - | chr4_2:17031555-17031574 | Msa0591990:intron | 20.0% |
!! | CCATTAAATATTATCTTACT+CGG | + | chr4_2:17031912-17031931 | None:intergenic | 20.0% |
!! | ACACAATAATTTATGGTTAA+TGG | - | chr4_2:17032136-17032155 | Msa0591990:intron | 20.0% |
!!! | TTTGTTTTAGCTTTTAGTTT+TGG | + | chr4_2:17032310-17032329 | None:intergenic | 20.0% |
!!! | TCTCATTTTGATCATTTAAT+CGG | - | chr4_2:17032368-17032387 | Msa0591990:intron | 20.0% |
!! | ATAGAATTTAGTTATTTGTG+AGG | - | chr4_2:17032654-17032673 | Msa0591990:intron | 20.0% |
!! | TTAAAATATTATTACCAGGT+AGG | - | chr4_2:17032828-17032847 | Msa0591990:intron | 20.0% |
!! | AATTTCTTTAGCTGTTTAAT+AGG | - | chr4_2:17032983-17033002 | Msa0591990:intron | 20.0% |
!! | TTAACAATGACAATATTTAG+TGG | + | chr4_2:17033403-17033422 | None:intergenic | 20.0% |
!!! | TCTCATTTTTCATTTTAATG+TGG | - | chr4_2:17033474-17033493 | Msa0591990:intron | 20.0% |
!! | TTCATTTATATCATAAGAGT+AGG | + | chr4_2:17034087-17034106 | None:intergenic | 20.0% |
!! | CTATATGAAAATCTATTTCA+AGG | - | chr4_2:17034454-17034473 | Msa0591990:intron | 20.0% |
!! | GATGAAAGTAATATATATGT+AGG | - | chr4_2:17034860-17034879 | Msa0591990:intron | 20.0% |
!!! | TTTTTAATCCTTTGTGTTTT+AGG | + | chr4_2:17035277-17035296 | None:intergenic | 20.0% |
!! | TATAACTTATGAATTCATAG+TGG | - | chr4_2:17035343-17035362 | Msa0591990:intron | 20.0% |
!! | GCTAGAACTTAATTTAAATA+TGG | + | chr4_2:17035468-17035487 | None:intergenic | 20.0% |
!!! | AGTAGCTATATTTTTTTTTG+TGG | - | chr4_2:17035602-17035621 | Msa0591990:intron | 20.0% |
!!! | AGCTACTAATAATTTTCTTA+AGG | + | chr4_2:17035805-17035824 | None:intergenic | 20.0% |
!! | CAGATATATTTATAGAGTTA+GGG | + | chr4_2:17036062-17036081 | None:intergenic | 20.0% |
!! | ACAGATATATTTATAGAGTT+AGG | + | chr4_2:17036063-17036082 | None:intergenic | 20.0% |
!! | TGTGAAATTATTAGTAACTA+GGG | + | chr4_2:17036319-17036338 | None:intergenic | 20.0% |
!!! | AGAAACTTTAGAATTGAATA+AGG | + | chr4_2:17036552-17036571 | None:intergenic | 20.0% |
!! | AATAAATTCTTACTAATGAC+AGG | + | chr4_2:17030027-17030046 | None:intergenic | 20.0% |
!! | TGGTTCAAAAAAATAGAAAA+CGG | - | chr4_2:17037100-17037119 | Msa0591990:intron | 20.0% |
!!! | ATGTTTTTCTCTTAATTTTC+AGG | - | chr4_2:17037308-17037327 | Msa0591990:intron | 20.0% |
!!! | TGTTTTTCTCTTAATTTTCA+GGG | - | chr4_2:17037309-17037328 | Msa0591990:intron | 20.0% |
!!! | ATGATTTTCAGAATCTTTTT+TGG | + | chr4_2:17037341-17037360 | None:intergenic | 20.0% |
!!! | AAAAAAGATTCTGAAAATCA+TGG | - | chr4_2:17037340-17037359 | Msa0591990:CDS | 20.0% |
!!! | AACATGTTCTTTTTTCATAT+CGG | + | chr4_2:17037372-17037391 | None:intergenic | 20.0% |
!! | AAAAATGTTGTTAGTAATGT+CGG | + | chr4_2:17037980-17037999 | None:intergenic | 20.0% |
!! | ATAAATCATCATCAACATAT+GGG | + | chr4_2:17038023-17038042 | None:intergenic | 20.0% |
! | ATTATGAAGTCTATTCAATG+TGG | - | chr4_2:17030151-17030170 | Msa0591990:intron | 25.0% |
! | TTATGAAGTCTATTCAATGT+GGG | - | chr4_2:17030152-17030171 | Msa0591990:intron | 25.0% |
! | TGGTTCAAGAAAATAGAAAA+CGG | - | chr4_2:17030290-17030309 | Msa0591990:intron | 25.0% |
! | ACAAAGCAAAGAAAAGAATT+AGG | + | chr4_2:17030443-17030462 | None:intergenic | 25.0% |
! | ATTCTTACCAAAACTGTTAT+GGG | - | chr4_2:17031227-17031246 | Msa0591990:CDS | 25.0% |
! | TACCATATTAGCACTAAAAA+TGG | - | chr4_2:17031491-17031510 | Msa0591990:intron | 25.0% |
!!! | ACAAATCGTTTGAAACTTTT+TGG | + | chr4_2:17031590-17031609 | None:intergenic | 25.0% |
! | ACATAAACTAAACCAATTCT+AGG | + | chr4_2:17031739-17031758 | None:intergenic | 25.0% |
! | TAGTCATCTATAATGTTCTT+TGG | - | chr4_2:17031783-17031802 | Msa0591990:intron | 25.0% |
! | AGAATTTACTTTCTTAAGCT+GGG | - | chr4_2:17031834-17031853 | Msa0591990:intron | 25.0% |
! | CCGAGTAAGATAATATTTAA+TGG | - | chr4_2:17031909-17031928 | Msa0591990:intron | 25.0% |
! | TAGTGCTACACAATAATTTA+TGG | - | chr4_2:17032129-17032148 | Msa0591990:intron | 25.0% |
! | AAGCTAAAACAAAAGTTTCA+TGG | - | chr4_2:17032317-17032336 | Msa0591990:intron | 25.0% |
!!! | AGAATTGAGATTTTGATCAA+AGG | - | chr4_2:17032434-17032453 | Msa0591990:intron | 25.0% |
!!! | GAATTGAGATTTTGATCAAA+GGG | - | chr4_2:17032435-17032454 | Msa0591990:intron | 25.0% |
! | TTAAAGTTTATGCATCTTTC+TGG | + | chr4_2:17033541-17033560 | None:intergenic | 25.0% |
! | AAGAAAGAAGAAAATGAAAG+AGG | + | chr4_2:17033770-17033789 | None:intergenic | 25.0% |
! | AATCTGTTTATGATCAATTG+TGG | - | chr4_2:17034140-17034159 | Msa0591990:intron | 25.0% |
! | ATACAATTAACTACTTAGCA+AGG | - | chr4_2:17034203-17034222 | Msa0591990:intron | 25.0% |
! | AAATATCTCAAAGTTTACCT+AGG | + | chr4_2:17034771-17034790 | None:intergenic | 25.0% |
! | GATTATAGTAAACCATATGA+TGG | + | chr4_2:17034941-17034960 | None:intergenic | 25.0% |
! | TCTCATTATGTCAAAGAAAA+GGG | + | chr4_2:17035048-17035067 | None:intergenic | 25.0% |
! | ATCTCATTATGTCAAAGAAA+AGG | + | chr4_2:17035049-17035068 | None:intergenic | 25.0% |
!! | TCTTTGAAAATCAAGGATTT+AGG | + | chr4_2:17035121-17035140 | None:intergenic | 25.0% |
!!! | AGCTATATTTTTTTTTGTGG+TGG | - | chr4_2:17035605-17035624 | Msa0591990:intron | 25.0% |
! | GACAATGCATAAAATATGTA+AGG | + | chr4_2:17035650-17035669 | None:intergenic | 25.0% |
! | AGAAAAACAAAACTAGACTA+CGG | - | chr4_2:17035779-17035798 | Msa0591990:intron | 25.0% |
! | CAGATATATTTATAGGGTTA+GGG | + | chr4_2:17036148-17036167 | None:intergenic | 25.0% |
! | ACAGATATATTTATAGGGTT+AGG | + | chr4_2:17036149-17036168 | None:intergenic | 25.0% |
!! | AGTAAAGGCATATACTTATA+GGG | + | chr4_2:17036244-17036263 | None:intergenic | 25.0% |
!! | AAGTAAAGGCATATACTTAT+AGG | + | chr4_2:17036245-17036264 | None:intergenic | 25.0% |
! | GTGTGAAATTATTAGTAACT+AGG | + | chr4_2:17036320-17036339 | None:intergenic | 25.0% |
! | GAGAAAAAATAGAATTGAGA+GGG | + | chr4_2:17036352-17036371 | None:intergenic | 25.0% |
! | AGAGAAAAAATAGAATTGAG+AGG | + | chr4_2:17036353-17036372 | None:intergenic | 25.0% |
! | TGTAATCGATATCATTATCA+AGG | - | chr4_2:17036505-17036524 | Msa0591990:intron | 25.0% |
!!! | TTATTTCTCTTTTGTAGTGA+TGG | - | chr4_2:17036909-17036928 | Msa0591990:CDS | 25.0% |
! | GGTTCAAAAAAATAGAAAAC+GGG | - | chr4_2:17037101-17037120 | Msa0591990:intron | 25.0% |
! | GTTCAAAAAAATAGAAAACG+GGG | - | chr4_2:17037102-17037121 | Msa0591990:intron | 25.0% |
!! | GTTTTTCTCTTAATTTTCAG+GGG | - | chr4_2:17037310-17037329 | Msa0591990:intron | 25.0% |
!!! | ACATGTTCTTTTTTCATATC+GGG | + | chr4_2:17037371-17037390 | None:intergenic | 25.0% |
! | AAAATTACAACAACAGAGTT+AGG | + | chr4_2:17037501-17037520 | None:intergenic | 25.0% |
! | TTTAATAACATGCAAGACTA+AGG | + | chr4_2:17037547-17037566 | None:intergenic | 25.0% |
! | AGTAGTATATTATCAACAAG+AGG | + | chr4_2:17037671-17037690 | None:intergenic | 25.0% |
! | GTAGAATGAAAAAATCAAAG+AGG | - | chr4_2:17037818-17037837 | Msa0591990:intron | 25.0% |
! | GATAAATCATCATCAACATA+TGG | + | chr4_2:17038024-17038043 | None:intergenic | 25.0% |
! | TGTAATCGATTCCATTATCA+AGG | - | chr4_2:17029734-17029753 | Msa0591990:CDS | 30.0% |
AAAGTGACTAACCTTGATAA+TGG | + | chr4_2:17029748-17029767 | None:intergenic | 30.0% | |
CATTCTTTCCAACAAATTCA+AGG | + | chr4_2:17029914-17029933 | None:intergenic | 30.0% | |
!! | CTTGAATTTGTTGGAAAGAA+TGG | - | chr4_2:17029912-17029931 | Msa0591990:intron | 30.0% |
!!! | TGAGTTTTAGGGTAACATTT+TGG | + | chr4_2:17029999-17030018 | None:intergenic | 30.0% |
TATGAAGTCTATTCAATGTG+GGG | - | chr4_2:17030153-17030172 | Msa0591990:intron | 30.0% | |
ATATGAAATTGTTGGAAGCT+TGG | - | chr4_2:17030267-17030286 | Msa0591990:intron | 30.0% | |
GGTTCAAGAAAATAGAAAAC+GGG | - | chr4_2:17030291-17030310 | Msa0591990:CDS | 30.0% | |
GTTCAAGAAAATAGAAAACG+GGG | - | chr4_2:17030292-17030311 | Msa0591990:CDS | 30.0% | |
AAAAGAAACACATGCAAAGA+AGG | - | chr4_2:17030336-17030355 | Msa0591990:CDS | 30.0% | |
AATTGCATCAACGATTTCTA+TGG | - | chr4_2:17030380-17030399 | Msa0591990:intron | 30.0% | |
ATTGCATCAACGATTTCTAT+GGG | - | chr4_2:17030381-17030400 | Msa0591990:intron | 30.0% | |
AGGAAACAATCATACTATCA+AGG | + | chr4_2:17030423-17030442 | None:intergenic | 30.0% | |
!! | GTCATTTACAGGTTTGTTTT+CGG | - | chr4_2:17030583-17030602 | Msa0591990:CDS | 30.0% |
! | AATGTCGTTTGCAGAAATAT+AGG | - | chr4_2:17030701-17030720 | Msa0591990:CDS | 30.0% |
TAGGATTCATTTGAAGAGAT+CGG | - | chr4_2:17030720-17030739 | Msa0591990:CDS | 30.0% | |
ATACCAACAGTAGTACATTA+AGG | + | chr4_2:17031037-17031056 | None:intergenic | 30.0% | |
ATGAATTGTACCTAAAGCTT+AGG | + | chr4_2:17031064-17031083 | None:intergenic | 30.0% | |
!!! | CATCTGTGCCTTTTTTATTT+TGG | - | chr4_2:17031081-17031100 | Msa0591990:intron | 30.0% |
! | GAAGAGTGAATCTATTTTAC+TGG | - | chr4_2:17031183-17031202 | Msa0591990:CDS | 30.0% |
GATTCTTACCAAAACTGTTA+TGG | - | chr4_2:17031226-17031245 | Msa0591990:CDS | 30.0% | |
!!! | TTCCTTTTTTAACATGTCCT+TGG | - | chr4_2:17031257-17031276 | Msa0591990:CDS | 30.0% |
AACCAAGGACATGTTAAAAA+AGG | + | chr4_2:17031262-17031281 | None:intergenic | 30.0% | |
TACTTAATTCACTGAAACCA+AGG | + | chr4_2:17031277-17031296 | None:intergenic | 30.0% | |
AAAATTGAATGGACAAAGCA+AGG | + | chr4_2:17031374-17031393 | None:intergenic | 30.0% | |
! | TTGCTTTGTCCATTCAATTT+TGG | - | chr4_2:17031373-17031392 | Msa0591990:intron | 30.0% |
!! | TTGTCCATTCAATTTTGGTA+TGG | - | chr4_2:17031378-17031397 | Msa0591990:intron | 30.0% |
CAAACCATACCAAAATTGAA+TGG | + | chr4_2:17031385-17031404 | None:intergenic | 30.0% | |
!! | CATTCAATTTTGGTATGGTT+TGG | - | chr4_2:17031383-17031402 | Msa0591990:intron | 30.0% |
TTCTCATATGAAAGTCACTA+TGG | + | chr4_2:17031541-17031560 | None:intergenic | 30.0% | |
!! | ATCGTTTGAAACTTTTTGGT+AGG | + | chr4_2:17031586-17031605 | None:intergenic | 30.0% |
AAGAGAAGTCCATAAAATCT+AGG | - | chr4_2:17031688-17031707 | Msa0591990:intron | 30.0% | |
AGAGAAGTCCATAAAATCTA+GGG | - | chr4_2:17031689-17031708 | Msa0591990:intron | 30.0% | |
! | AATTGGTTTAGTTTATGTCG+AGG | - | chr4_2:17031741-17031760 | Msa0591990:intron | 30.0% |
GAGAATTTACTTTCTTAAGC+TGG | - | chr4_2:17031833-17031852 | Msa0591990:intron | 30.0% | |
! | CATTATTACAAAGCCTTGTA+CGG | - | chr4_2:17032202-17032221 | Msa0591990:intron | 30.0% |
TATCGTTAAGTGACAATGAA+TGG | + | chr4_2:17032272-17032291 | None:intergenic | 30.0% | |
AACAAAAGTTTCATGGTTTG+AGG | - | chr4_2:17032324-17032343 | Msa0591990:intron | 30.0% | |
!! | TTGAAGAGTGTTGTATTAGT+AGG | - | chr4_2:17032411-17032430 | Msa0591990:intron | 30.0% |
GACAATTTAGCCAATTTATG+AGG | - | chr4_2:17032509-17032528 | Msa0591990:intron | 30.0% | |
TTGCAAATCAGAACAAATTC+AGG | + | chr4_2:17032572-17032591 | None:intergenic | 30.0% | |
!! | ACACCAATGGATTATTAATG+TGG | - | chr4_2:17032882-17032901 | Msa0591990:intron | 30.0% |
ATGCCACATTAATAATCCAT+TGG | + | chr4_2:17032888-17032907 | None:intergenic | 30.0% | |
AGCTGTTTAATAGGAAGATA+AGG | - | chr4_2:17032992-17033011 | Msa0591990:intron | 30.0% | |
GTTTAATAGGAAGATAAGGA+AGG | - | chr4_2:17032996-17033015 | Msa0591990:intron | 30.0% | |
TAATGGTTGAGATAGATATG+AGG | - | chr4_2:17033218-17033237 | Msa0591990:intron | 30.0% | |
GATCACATGATAAAATAGCT+AGG | - | chr4_2:17033590-17033609 | Msa0591990:intron | 30.0% | |
ACATGATAAAATAGCTAGGT+TGG | - | chr4_2:17033594-17033613 | Msa0591990:intron | 30.0% | |
! | TTTAAGATCACAATTCTGGA+AGG | - | chr4_2:17033634-17033653 | Msa0591990:intron | 30.0% |
TAGAGATTGTAGAAAAGGTT+TGG | - | chr4_2:17033669-17033688 | Msa0591990:intron | 30.0% | |
AATTGAAACTGAACGAAGAA+AGG | + | chr4_2:17033804-17033823 | None:intergenic | 30.0% | |
! | TGATCTCATGTGATTAGTTA+AGG | + | chr4_2:17034183-17034202 | None:intergenic | 30.0% |
TAGTAGCATGTTAATAGTTG+AGG | - | chr4_2:17034339-17034358 | Msa0591990:intron | 30.0% | |
TAATAGTTGAGGAAGCAAAA+TGG | - | chr4_2:17034350-17034369 | Msa0591990:intron | 30.0% | |
TCGTTATTATGTGCATATGT+AGG | - | chr4_2:17034807-17034826 | Msa0591990:intron | 30.0% | |
CGTTATTATGTGCATATGTA+GGG | - | chr4_2:17034808-17034827 | Msa0591990:intron | 30.0% | |
GCATCATATAGAAGAATAGT+TGG | + | chr4_2:17034914-17034933 | None:intergenic | 30.0% | |
TATGATGCAATACCATCATA+TGG | - | chr4_2:17034926-17034945 | Msa0591990:intron | 30.0% | |
ATCATGATGCAATTTAAACG+AGG | - | chr4_2:17034958-17034977 | Msa0591990:intron | 30.0% | |
TCATGATGCAATTTAAACGA+GGG | - | chr4_2:17034959-17034978 | Msa0591990:intron | 30.0% | |
AATAAGCAACCTCTAATCTA+AGG | - | chr4_2:17035080-17035099 | Msa0591990:intron | 30.0% | |
TAAACAGTTCCTTAGATTAG+AGG | + | chr4_2:17035092-17035111 | None:intergenic | 30.0% | |
! | ACACAACTCTTTGAAAATCA+AGG | + | chr4_2:17035128-17035147 | None:intergenic | 30.0% |
TAAAAACTGTGTAATCCGAA+GGG | - | chr4_2:17035413-17035432 | Msa0591990:intron | 30.0% | |
CGTTTGTTTATCTGTTATCA+AGG | + | chr4_2:17035526-17035545 | None:intergenic | 30.0% | |
TGCATAAAATATGTAAGGTC+CGG | + | chr4_2:17035645-17035664 | None:intergenic | 30.0% | |
!! | TTATAGAGTTAGGGTTTTGT+TGG | + | chr4_2:17036053-17036072 | None:intergenic | 30.0% |
TATCTGTTTACTTCTCTTGA+TGG | - | chr4_2:17036076-17036095 | Msa0591990:intron | 30.0% | |
ATATCTGTTTACTTCTCTTC+TGG | - | chr4_2:17036161-17036180 | Msa0591990:intron | 30.0% | |
!! | TCTCTAACTTGTTTCTTTCT+TGG | - | chr4_2:17036368-17036387 | Msa0591990:intron | 30.0% |
!! | CTCTAACTTGTTTCTTTCTT+GGG | - | chr4_2:17036369-17036388 | Msa0591990:intron | 30.0% |
! | GGTTTTACTGCAAATTGTAA+TGG | - | chr4_2:17036390-17036409 | Msa0591990:intron | 30.0% |
CTTTCTTTCCAACAAATTCA+AGG | + | chr4_2:17036689-17036708 | None:intergenic | 30.0% | |
!! | CTTGAATTTGTTGGAAAGAA+AGG | - | chr4_2:17029912-17029931 | Msa0591990:intron | 30.0% |
AAGTCATAAACATCCATGTT+TGG | + | chr4_2:17036748-17036767 | None:intergenic | 30.0% | |
ATCATGAAGTCTATTGAATG+TGG | - | chr4_2:17036955-17036974 | Msa0591990:CDS | 30.0% | |
TCATGAAGTCTATTGAATGT+GGG | - | chr4_2:17036956-17036975 | Msa0591990:CDS | 30.0% | |
ATATGAAATTGTTGGAAGCT+CGG | - | chr4_2:17030267-17030286 | Msa0591990:intron | 30.0% | |
AAAAGAAACACTTGCAAAGA+AGG | - | chr4_2:17037146-17037165 | Msa0591990:CDS | 30.0% | |
AGGAAAGAATCATACTATCA+AGG | + | chr4_2:17037233-17037252 | None:intergenic | 30.0% | |
TGCTAAAACTAACCTGTAAA+TGG | + | chr4_2:17037400-17037419 | None:intergenic | 30.0% | |
AGAGGATATATAGAAGCTAA+TGG | + | chr4_2:17037653-17037672 | None:intergenic | 30.0% | |
!!! | CATTCTACCTTTTTTCTCTT+CGG | + | chr4_2:17037806-17037825 | None:intergenic | 30.0% |
ACGCTAAATTGTGTTTCAAA+AGG | + | chr4_2:17037847-17037866 | None:intergenic | 30.0% | |
ATGATTTATCATCACTTGTG+TGG | - | chr4_2:17038034-17038053 | Msa0591990:CDS | 30.0% | |
GAAAGTGATGTCATGATCAA+TGG | + | chr4_2:17029693-17029712 | None:intergenic | 35.0% | |
ATCAGAAGCTGTGTTACATT+TGG | + | chr4_2:17029890-17029909 | None:intergenic | 35.0% | |
TTCTGATGCCTTGAATTTGT+TGG | - | chr4_2:17029903-17029922 | Msa0591990:CDS | 35.0% | |
AAGTCATAAGCATCCATGTT+TGG | + | chr4_2:17029973-17029992 | None:intergenic | 35.0% | |
! | GACAGGAATGTTGAGTTTTA+GGG | + | chr4_2:17030010-17030029 | None:intergenic | 35.0% |
! | TGACAGGAATGTTGAGTTTT+AGG | + | chr4_2:17030011-17030030 | None:intergenic | 35.0% |
TACATATTGGACTAAGCCTT+TGG | - | chr4_2:17030180-17030199 | Msa0591990:intron | 35.0% | |
! | CTTTGCATGTGTTTCTTTTG+AGG | + | chr4_2:17030335-17030354 | None:intergenic | 35.0% |
AGAAATCGTTGATGCAATTC+TGG | + | chr4_2:17030379-17030398 | None:intergenic | 35.0% | |
CTCAAAATTATGGATGTTCC+AGG | - | chr4_2:17030537-17030556 | Msa0591990:CDS | 35.0% | |
AATTATGGATGTTCCAGGTT+TGG | - | chr4_2:17030542-17030561 | Msa0591990:CDS | 35.0% | |
ATTATGGATGTTCCAGGTTT+GGG | - | chr4_2:17030543-17030562 | Msa0591990:CDS | 35.0% | |
ACATGTTGCTAGTCATTTAC+AGG | - | chr4_2:17030572-17030591 | Msa0591990:CDS | 35.0% | |
!! | TTTACAGGTTTGTTTTCGGA+AGG | - | chr4_2:17030587-17030606 | Msa0591990:CDS | 35.0% |
GTGGGAAGAAAAAATCAAAG+TGG | - | chr4_2:17030758-17030777 | Msa0591990:intron | 35.0% | |
ATTGACAAGGTTCATAGTGA+TGG | - | chr4_2:17030805-17030824 | Msa0591990:intron | 35.0% | |
CAGTTTGAAAGTTATCGTTC+TGG | + | chr4_2:17030858-17030877 | None:intergenic | 35.0% | |
ATCCTACCTTTACAACCTTA+TGG | - | chr4_2:17030939-17030958 | Msa0591990:CDS | 35.0% | |
ATTAGGCCATAAGGTTGTAA+AGG | + | chr4_2:17030948-17030967 | None:intergenic | 35.0% | |
AAACTGCATATTAGGCCATA+AGG | + | chr4_2:17030957-17030976 | None:intergenic | 35.0% | |
AACAGTAGTACATTAAGGCA+AGG | + | chr4_2:17031032-17031051 | None:intergenic | 35.0% | |
TTGCCTTAATGTACTACTGT+TGG | - | chr4_2:17031031-17031050 | Msa0591990:intron | 35.0% | |
TGGTATATCACCTAAGCTTT+AGG | - | chr4_2:17031051-17031070 | Msa0591990:intron | 35.0% | |
!! | ATTCCTTTAAGGTCTATAGC+TGG | - | chr4_2:17031156-17031175 | Msa0591990:intron | 35.0% |
!!! | GGCCATTTTTAGTGCTAATA+TGG | + | chr4_2:17031496-17031515 | None:intergenic | 35.0% |
ACTAAAAATGGCCATATCAG+AGG | - | chr4_2:17031503-17031522 | Msa0591990:intron | 35.0% | |
CATCTATAAGACCTCTGATA+TGG | + | chr4_2:17031517-17031536 | None:intergenic | 35.0% | |
! | ACTTTCCTCCCTAGATTTTA+TGG | + | chr4_2:17031700-17031719 | None:intergenic | 35.0% |
!!! | TAGGGAGGAAAGTATTTTAC+AGG | - | chr4_2:17031707-17031726 | Msa0591990:intron | 35.0% |
AAAAAGTAAACATGCTAGCG+AGG | + | chr4_2:17031961-17031980 | None:intergenic | 35.0% | |
AAGATATAGTACTCCGTACA+AGG | + | chr4_2:17032218-17032237 | None:intergenic | 35.0% | |
! | TGAGAAATGCTTTTCTCCTT+AGG | + | chr4_2:17032353-17032372 | None:intergenic | 35.0% |
CTAATACAACACTCTTCAAG+TGG | + | chr4_2:17032410-17032429 | None:intergenic | 35.0% | |
!! | TGAGATTTTGATCAAAGGGA+TGG | - | chr4_2:17032439-17032458 | Msa0591990:intron | 35.0% |
! | CTCTAGAGACATAGTGAATA+TGG | + | chr4_2:17032472-17032491 | None:intergenic | 35.0% |
CCTCGATTATCCTCATAAAT+TGG | + | chr4_2:17032522-17032541 | None:intergenic | 35.0% | |
CCAATTTATGAGGATAATCG+AGG | - | chr4_2:17032519-17032538 | Msa0591990:intron | 35.0% | |
GTTATTTGTGAGGATAATCG+AGG | - | chr4_2:17032664-17032683 | Msa0591990:intron | 35.0% | |
TCTCATATTAGACACACCAA+TGG | - | chr4_2:17032869-17032888 | Msa0591990:intron | 35.0% | |
AAGAGTTTAAGTGTCCTAGT+TGG | - | chr4_2:17033019-17033038 | Msa0591990:intron | 35.0% | |
TTTGTTGAAGAAGGAAGGAA+GGG | - | chr4_2:17033042-17033061 | Msa0591990:intron | 35.0% | |
! | AAGAAGCATAGAGAATTCTC+AGG | + | chr4_2:17033084-17033103 | None:intergenic | 35.0% |
!! | ATGGAATGTGAATTGACTTG+AGG | - | chr4_2:17033295-17033314 | Msa0591990:intron | 35.0% |
! | AATTGAAACCTGTCTGGTTT+AGG | - | chr4_2:17033319-17033338 | Msa0591990:intron | 35.0% |
! | CTATATGACAGAGTTGTTTC+AGG | - | chr4_2:17033568-17033587 | Msa0591990:intron | 35.0% |
! | AATAGCTAGGTTGGATGATA+TGG | - | chr4_2:17033603-17033622 | Msa0591990:intron | 35.0% |
CCAGAATTGTGATCTTAAAG+TGG | + | chr4_2:17033633-17033652 | None:intergenic | 35.0% | |
!! | CCACTTTAAGATCACAATTC+TGG | - | chr4_2:17033630-17033649 | Msa0591990:intron | 35.0% |
TTTCTACAATCTCTATGCCT+CGG | + | chr4_2:17033664-17033683 | None:intergenic | 35.0% | |
AGGCATAGAGATTGTAGAAA+AGG | - | chr4_2:17033664-17033683 | Msa0591990:intron | 35.0% | |
TGTAGAAAAGGTTTGGACAT+TGG | - | chr4_2:17033676-17033695 | Msa0591990:intron | 35.0% | |
! | ATGCACTCTTTCATTTTCTC+AGG | + | chr4_2:17033828-17033847 | None:intergenic | 35.0% |
GAGTGCATTTCAATACACAT+TGG | - | chr4_2:17033840-17033859 | Msa0591990:intron | 35.0% | |
TTTACTACCTTCCTTGAACA+TGG | - | chr4_2:17033901-17033920 | Msa0591990:intron | 35.0% | |
!! | TTCACTGAAAAAGGTGTTGA+AGG | + | chr4_2:17033983-17034002 | None:intergenic | 35.0% |
TATATCATAAGAGTAGGCAC+TGG | + | chr4_2:17034081-17034100 | None:intergenic | 35.0% | |
AACATGCTACTATCCAAGTT+GGG | + | chr4_2:17034331-17034350 | None:intergenic | 35.0% | |
TAACATGCTACTATCCAAGT+TGG | + | chr4_2:17034332-17034351 | None:intergenic | 35.0% | |
GCATGTACATTCCAAAAGAT+CGG | + | chr4_2:17034397-17034416 | None:intergenic | 35.0% | |
GTAAGAGAAAAATCGTAAGC+TGG | + | chr4_2:17034435-17034454 | None:intergenic | 35.0% | |
TCTTTCATGGAAGAGAAGAT+TGG | - | chr4_2:17034485-17034504 | Msa0591990:intron | 35.0% | |
! | CTTATTTGTTGCAACAGCTA+AGG | - | chr4_2:17034554-17034573 | Msa0591990:intron | 35.0% |
GAGGACAAAGAAATATCTCA+CGG | + | chr4_2:17034613-17034632 | None:intergenic | 35.0% | |
TCTAGTCAGTGTATCTTTCT+TGG | + | chr4_2:17034654-17034673 | None:intergenic | 35.0% | |
CATGATGCAATTTAAACGAG+GGG | - | chr4_2:17034960-17034979 | Msa0591990:intron | 35.0% | |
AATTTAAACGAGGGGTTAGA+AGG | - | chr4_2:17034968-17034987 | Msa0591990:intron | 35.0% | |
!! | ATCCTTTGTGTTTTAGGCTA+GGG | + | chr4_2:17035271-17035290 | None:intergenic | 35.0% |
!! | AATCCTTTGTGTTTTAGGCT+AGG | + | chr4_2:17035272-17035291 | None:intergenic | 35.0% |
!!! | GGATTACACAGTTTTTAGGT+AGG | + | chr4_2:17035410-17035429 | None:intergenic | 35.0% |
! | CTTCGGATTACACAGTTTTT+AGG | + | chr4_2:17035414-17035433 | None:intergenic | 35.0% |
CTAAAAACTGTGTAATCCGA+AGG | - | chr4_2:17035412-17035431 | Msa0591990:intron | 35.0% | |
TTTAAATATGGCTCTCCAAC+AGG | + | chr4_2:17035456-17035475 | None:intergenic | 35.0% | |
! | AAGTTCTAGCCGATTGAAAT+TGG | - | chr4_2:17035478-17035497 | Msa0591990:intron | 35.0% |
TCACACGTACCAATTTCAAT+CGG | + | chr4_2:17035490-17035509 | None:intergenic | 35.0% | |
CATAAAATATGTAAGGTCCG+GGG | + | chr4_2:17035643-17035662 | None:intergenic | 35.0% | |
GCATAAAATATGTAAGGTCC+GGG | + | chr4_2:17035644-17035663 | None:intergenic | 35.0% | |
TGTGTAGGGAATTTACACAT+TGG | + | chr4_2:17035945-17035964 | None:intergenic | 35.0% | |
ACATACAGCTGTCCAAATTA+AGG | - | chr4_2:17035962-17035981 | Msa0591990:intron | 35.0% | |
! | GTCTCGTTGTTTCCTTAATT+TGG | + | chr4_2:17035977-17035996 | None:intergenic | 35.0% |
AATTAAGGAAACAACGAGAC+AGG | - | chr4_2:17035977-17035996 | Msa0591990:intron | 35.0% | |
GGCATATACTTATAGGGTTA+GGG | + | chr4_2:17036238-17036257 | None:intergenic | 35.0% | |
AGGCATATACTTATAGGGTT+AGG | + | chr4_2:17036239-17036258 | None:intergenic | 35.0% | |
TAGTCTACGAAGAGAAGTAA+AGG | + | chr4_2:17036259-17036278 | None:intergenic | 35.0% | |
AATTGCAATAACCTTGAGAC+CGG | + | chr4_2:17036446-17036465 | None:intergenic | 35.0% | |
ATCAGAAGCTGTATTGCATT+TGG | + | chr4_2:17036665-17036684 | None:intergenic | 35.0% | |
TTCTGATGCCTTGAATTTGT+TGG | - | chr4_2:17029903-17029922 | Msa0591990:CDS | 35.0% | |
! | TGAGTTGTAGGGTAACATTT+TGG | + | chr4_2:17036774-17036793 | None:intergenic | 35.0% |
CATGAAGTCTATTGAATGTG+GGG | - | chr4_2:17036957-17036976 | Msa0591990:CDS | 35.0% | |
TAAGCCTTTGGTTGAAAAAG+AGG | - | chr4_2:17036996-17037015 | Msa0591990:intron | 35.0% | |
!!! | TTGACCTCTTTTTCAACCAA+AGG | + | chr4_2:17037003-17037022 | None:intergenic | 35.0% |
! | CTTTGCAAGTGTTTCTTTTG+AGG | + | chr4_2:17037145-17037164 | None:intergenic | 35.0% |
CTATATGCTGTCAATCAACT+AGG | - | chr4_2:17037207-17037226 | Msa0591990:intron | 35.0% | |
AAAACTAACCTGTAAATGGC+TGG | + | chr4_2:17037396-17037415 | None:intergenic | 35.0% | |
AGTAGTGAATTATGCAGTCA+TGG | - | chr4_2:17037583-17037602 | Msa0591990:intron | 35.0% | |
TCAACATATGGGAACAAGTT+GGG | + | chr4_2:17038012-17038031 | None:intergenic | 35.0% | |
ATCAACATATGGGAACAAGT+TGG | + | chr4_2:17038013-17038032 | None:intergenic | 35.0% | |
CACTTTCCTCAACTCTATTG+AGG | - | chr4_2:17029706-17029725 | Msa0591990:CDS | 40.0% | |
ACATCTCCTCAATAGAGTTG+AGG | + | chr4_2:17029715-17029734 | None:intergenic | 40.0% | |
TGATGCTCATATGCCAAACA+TGG | - | chr4_2:17029957-17029976 | Msa0591990:intron | 40.0% | |
AATGTGGGGCTTGTACATAT+TGG | - | chr4_2:17030167-17030186 | Msa0591990:intron | 40.0% | |
TTGACGTCTTCTTCAACCAA+AGG | + | chr4_2:17030199-17030218 | None:intergenic | 40.0% | |
TGGCAACATGTTGTCAGAAA+CGG | - | chr4_2:17030226-17030245 | Msa0591990:intron | 40.0% | |
TGAAATTGTTGGAAGCTTGG+TGG | - | chr4_2:17030270-17030289 | Msa0591990:intron | 40.0% | |
TCAAACTCAATCGATCGATC+AGG | - | chr4_2:17030831-17030850 | Msa0591990:intron | 40.0% | |
CAGCTAGAAAACCATCATTC+CGG | + | chr4_2:17030897-17030916 | None:intergenic | 40.0% | |
!!! | ATGATGGTTTTCTAGCTGAG+TGG | - | chr4_2:17030899-17030918 | Msa0591990:CDS | 40.0% |
GAACCAGCTATAGACCTTAA+AGG | + | chr4_2:17031162-17031181 | None:intergenic | 40.0% | |
! | GTGCTTTCCCATAACAGTTT+TGG | + | chr4_2:17031237-17031256 | None:intergenic | 40.0% |
AAACTCAGGCTCTTTGACAA+CGG | - | chr4_2:17031330-17031349 | Msa0591990:intron | 40.0% | |
ACTTCAGAGACCAATGTGTA+AGG | - | chr4_2:17031413-17031432 | Msa0591990:intron | 40.0% | |
CTTCAGAGACCAATGTGTAA+GGG | - | chr4_2:17031414-17031433 | Msa0591990:intron | 40.0% | |
TTACGTTGCAAGACGTCTAT+AGG | + | chr4_2:17031650-17031669 | None:intergenic | 40.0% | |
GAAGTCCATAAAATCTAGGG+AGG | - | chr4_2:17031692-17031711 | Msa0591990:intron | 40.0% | |
TACAGGTTACTGCCTAGAAT+TGG | - | chr4_2:17031724-17031743 | Msa0591990:intron | 40.0% | |
TCTTCAAGTGGACGGTATTA+AGG | + | chr4_2:17032398-17032417 | None:intergenic | 40.0% | |
TACAACACTCTTCAAGTGGA+CGG | + | chr4_2:17032406-17032425 | None:intergenic | 40.0% | |
TATGAGGATAATCGAGGTTC+TGG | - | chr4_2:17032525-17032544 | Msa0591990:intron | 40.0% | |
TCGATCTGTGACTATAGACT+AGG | - | chr4_2:17032688-17032707 | Msa0591990:intron | 40.0% | |
CAATTACACAATGACCTACC+TGG | + | chr4_2:17032845-17032864 | None:intergenic | 40.0% | |
CCTTCTTCAACAAACCAACT+AGG | + | chr4_2:17033036-17033055 | None:intergenic | 40.0% | |
!! | CCTAGTTGGTTTGTTGAAGA+AGG | - | chr4_2:17033033-17033052 | Msa0591990:intron | 40.0% |
!! | GTTGGTTTGTTGAAGAAGGA+AGG | - | chr4_2:17033037-17033056 | Msa0591990:intron | 40.0% |
! | GTTTGTTGAAGAAGGAAGGA+AGG | - | chr4_2:17033041-17033060 | Msa0591990:intron | 40.0% |
TTGTTGAAGAAGGAAGGAAG+GGG | - | chr4_2:17033043-17033062 | Msa0591990:intron | 40.0% | |
AAGTCAGCTCAGTTTCTACA+TGG | - | chr4_2:17033276-17033295 | Msa0591990:intron | 40.0% | |
TGAGGTAATTGAAACCTGTC+TGG | - | chr4_2:17033313-17033332 | Msa0591990:intron | 40.0% | |
GGTTTGGACATTGGATGATA+TGG | - | chr4_2:17033685-17033704 | Msa0591990:intron | 40.0% | |
TCAATACACATTGGTCAAGC+TGG | - | chr4_2:17033849-17033868 | Msa0591990:intron | 40.0% | |
AAGGTAGTAAAGTTCCAAGC+CGG | + | chr4_2:17033892-17033911 | None:intergenic | 40.0% | |
!! | TTTTTCAGTGAAACCAGTGC+CGG | - | chr4_2:17033991-17034010 | Msa0591990:intron | 40.0% |
GATATCCATCAATCCCAACT+TGG | - | chr4_2:17034315-17034334 | Msa0591990:intron | 40.0% | |
! | ACTATCCAAGTTGGGATTGA+TGG | + | chr4_2:17034323-17034342 | None:intergenic | 40.0% |
! | AAGTCTGCTATCCGATCTTT+TGG | - | chr4_2:17034383-17034402 | Msa0591990:intron | 40.0% |
! | CAAGGTGCTTTGTTCTTTCA+TGG | - | chr4_2:17034472-17034491 | Msa0591990:intron | 40.0% |
AATTCACCAGTTCACCTTCA+AGG | + | chr4_2:17034726-17034745 | None:intergenic | 40.0% | |
AGGTGAACTGGTGAATTTCT+AGG | - | chr4_2:17034729-17034748 | Msa0591990:intron | 40.0% | |
GAAAGAACAAGTCTCTTCCT+AGG | - | chr4_2:17034751-17034770 | Msa0591990:intron | 40.0% | |
ATGTAGGGTGTGAAAGATGT+TGG | - | chr4_2:17034823-17034842 | Msa0591990:intron | 40.0% | |
TTCGTATTCCCTCAACGAAT+TGG | - | chr4_2:17035240-17035259 | Msa0591990:intron | 40.0% | |
AACTGTGGGATTAAACCCTT+CGG | + | chr4_2:17035431-17035450 | None:intergenic | 40.0% | |
!!! | ATTTTTTTTTGTGGTGGCCG+AGG | - | chr4_2:17035611-17035630 | Msa0591990:intron | 40.0% |
TTTGGACAGCTGTATGTGTA+GGG | + | chr4_2:17035959-17035978 | None:intergenic | 40.0% | |
ATTTGGACAGCTGTATGTGT+AGG | + | chr4_2:17035960-17035979 | None:intergenic | 40.0% | |
!!! | GGGTTTTGTTGGATCAACTA+AGG | + | chr4_2:17036042-17036061 | None:intergenic | 40.0% |
! | CTAGGGTTTGTGTTTTGCAA+AGG | + | chr4_2:17036302-17036321 | None:intergenic | 40.0% |
ACATCTCCTCAATAGAGTTG+AGG | + | chr4_2:17029715-17029734 | None:intergenic | 40.0% | |
TGATGCTCATATGCCAAACA+TGG | - | chr4_2:17029957-17029976 | Msa0591990:intron | 40.0% | |
! | GACAGGAATGTTGAGTTGTA+GGG | + | chr4_2:17036785-17036804 | None:intergenic | 40.0% |
! | TGACAGGAATGTTGAGTTGT+AGG | + | chr4_2:17036786-17036805 | None:intergenic | 40.0% |
!! | CTTCATGATAGAACTTGCTG+TGG | + | chr4_2:17036944-17036963 | None:intergenic | 40.0% |
CGAATATTGGACTAAGCCTT+TGG | - | chr4_2:17036984-17037003 | Msa0591990:intron | 40.0% | |
AAAAAGAGGTCAAGACCATG+TGG | - | chr4_2:17037010-17037029 | Msa0591990:intron | 40.0% | |
TCTTACTACATGTTGCCACA+TGG | + | chr4_2:17037028-17037047 | None:intergenic | 40.0% | |
TGTACGTACCTAAGTCTAGT+TGG | - | chr4_2:17037452-17037471 | Msa0591990:CDS | 40.0% | |
AATCCTAGCCAACTAGACTT+AGG | + | chr4_2:17037463-17037482 | None:intergenic | 40.0% | |
AGCTCAACCGAAGAGAAAAA+AGG | - | chr4_2:17037796-17037815 | Msa0591990:intron | 40.0% | |
TCGAATTCAGGAGAAAACTC+TGG | + | chr4_2:17037900-17037919 | None:intergenic | 40.0% | |
GCAATTGTCATGACATTGTG+TGG | + | chr4_2:17037923-17037942 | None:intergenic | 40.0% | |
CAATAACCTTGAGACCAGCA+GGG | + | chr4_2:17029670-17029689 | None:intergenic | 45.0% | |
! | AAGAAGACGTCAAGAGCATG+TGG | - | chr4_2:17030206-17030225 | Msa0591990:intron | 45.0% |
ATTCTGGCGACCAAGACAAA+CGG | + | chr4_2:17030363-17030382 | None:intergenic | 45.0% | |
CTATGGGCAGTCAATCAACT+AGG | - | chr4_2:17030397-17030416 | Msa0591990:intron | 45.0% | |
TCGGCTGATGAAACAAAACG+TGG | - | chr4_2:17030739-17030758 | Msa0591990:CDS | 45.0% | |
CGGCTGATGAAACAAAACGT+GGG | - | chr4_2:17030740-17030759 | Msa0591990:CDS | 45.0% | |
! | TCAAGACGAGTGCATTGACA+AGG | - | chr4_2:17030792-17030811 | Msa0591990:intron | 45.0% |
TCAAACTGAGCTGACTGATC+AGG | - | chr4_2:17030870-17030889 | Msa0591990:intron | 45.0% | |
!! | CTAGCTGAGTGGATTGATTG+CGG | - | chr4_2:17030910-17030929 | Msa0591990:CDS | 45.0% |
!! | TAGCTGAGTGGATTGATTGC+GGG | - | chr4_2:17030911-17030930 | Msa0591990:CDS | 45.0% |
GGCCATAAGGTTGTAAAGGT+AGG | + | chr4_2:17030944-17030963 | None:intergenic | 45.0% | |
AGGTAGCATCCCTTACACAT+TGG | + | chr4_2:17031426-17031445 | None:intergenic | 45.0% | |
GGATGCTACCTTTCAGTGAA+TGG | - | chr4_2:17031435-17031454 | Msa0591990:intron | 45.0% | |
CTCTGCAACCATTCACTGAA+AGG | + | chr4_2:17031446-17031465 | None:intergenic | 45.0% | |
AAGTAAACATGCTAGCGAGG+AGG | + | chr4_2:17031958-17031977 | None:intergenic | 45.0% | |
TGCACAAATGCACATTGCTC+AGG | - | chr4_2:17032002-17032021 | Msa0591990:intron | 45.0% | |
GCACAAATGCACATTGCTCA+GGG | - | chr4_2:17032003-17032022 | Msa0591990:intron | 45.0% | |
TCATGGTTTGAGGAGTCCTA+AGG | - | chr4_2:17032334-17032353 | Msa0591990:intron | 45.0% | |
!! | GAGGTTCTGGTTTGCCATTT+GGG | - | chr4_2:17032538-17032557 | Msa0591990:intron | 45.0% |
!! | AGGTTCTGGTTTGCCATTTG+GGG | - | chr4_2:17032539-17032558 | Msa0591990:intron | 45.0% |
TTCAGGAAGTCATCCCCAAA+TGG | + | chr4_2:17032555-17032574 | None:intergenic | 45.0% | |
CAACGTATCCTAAACCAGAC+AGG | + | chr4_2:17033330-17033349 | None:intergenic | 45.0% | |
! | CTGTCTGGTTTAGGATACGT+TGG | - | chr4_2:17033328-17033347 | Msa0591990:intron | 45.0% |
! | CTCCCTTTTGAATTTGCGAG+CGG | + | chr4_2:17033725-17033744 | None:intergenic | 45.0% |
CTAACTGCCATGTTCAAGGA+AGG | + | chr4_2:17033911-17033930 | None:intergenic | 45.0% | |
GAGACTAACTGCCATGTTCA+AGG | + | chr4_2:17033915-17033934 | None:intergenic | 45.0% | |
! | GAACATGGCAGTTAGTCTCA+TGG | - | chr4_2:17033916-17033935 | Msa0591990:intron | 45.0% |
CTTAGGGACATGACTGTAAG+AGG | - | chr4_2:17033946-17033965 | Msa0591990:intron | 45.0% | |
!! | GGCACTGGTTTCACTGAAAA+AGG | + | chr4_2:17033992-17034011 | None:intergenic | 45.0% |
AGCGTGGAACATATGCTTTC+CGG | + | chr4_2:17034013-17034032 | None:intergenic | 45.0% | |
! | TCTACCGAGCTCTAACTTGT+GGG | + | chr4_2:17034297-17034316 | None:intergenic | 45.0% |
! | ATCTACCGAGCTCTAACTTG+TGG | + | chr4_2:17034298-17034317 | None:intergenic | 45.0% |
AAGGTTTCTCTGATGCTGAC+TGG | + | chr4_2:17034707-17034726 | None:intergenic | 45.0% | |
CAGCATCAGAGAAACCTTGA+AGG | - | chr4_2:17034709-17034728 | Msa0591990:intron | 45.0% | |
GAGAAACCTTGAAGGTGAAC+TGG | - | chr4_2:17034717-17034736 | Msa0591990:intron | 45.0% | |
! | AGAAGGAGTGGACATTGGTT+TGG | - | chr4_2:17034985-17035004 | Msa0591990:intron | 45.0% |
!! | GTGGACATTGGTTTGGAAAC+AGG | - | chr4_2:17034992-17035011 | Msa0591990:intron | 45.0% |
AGCGATCTCGATTGAATCTC+TGG | - | chr4_2:17035177-17035196 | Msa0591990:intron | 45.0% | |
GCGATCTCGATTGAATCTCT+GGG | - | chr4_2:17035178-17035197 | Msa0591990:intron | 45.0% | |
TGCCCTAGCCTAAAACACAA+AGG | - | chr4_2:17035266-17035285 | Msa0591990:intron | 45.0% | |
TAATCCCACAGTTCACCTGT+TGG | - | chr4_2:17035438-17035457 | Msa0591990:intron | 45.0% | |
CACTGTCCTCAACTCTATTG+AGG | - | chr4_2:17036477-17036496 | Msa0591990:intron | 45.0% | |
AATGTGGGGCTTGCGAATAT+TGG | - | chr4_2:17036971-17036990 | Msa0591990:intron | 45.0% | |
TGAAATTGTTGGAAGCTCGG+TGG | - | chr4_2:17037080-17037099 | Msa0591990:intron | 45.0% | |
ACATGTTGCCAGCCATTTAC+AGG | - | chr4_2:17037385-17037404 | Msa0591990:CDS | 45.0% | |
GTACCTAAGTCTAGTTGGCT+AGG | - | chr4_2:17037457-17037476 | Msa0591990:CDS | 45.0% | |
AGAAGCTACTCACTCAATGC+CGG | - | chr4_2:17037867-17037886 | Msa0591990:intron | 45.0% | |
GACATTGTGTGGTCGAATTC+AGG | + | chr4_2:17037912-17037931 | None:intergenic | 45.0% | |
ATTGCGACACACGACAACAA+TGG | - | chr4_2:17037938-17037957 | Msa0591990:intron | 45.0% | |
!!! | AATTCTATTTATTTTTTTTA+AGG | + | chr4_2:17032642-17032661 | None:intergenic | 5.0% |
TGAGACCAGCAGGGAATGAT+GGG | + | chr4_2:17029661-17029680 | None:intergenic | 50.0% | |
TTGAGACCAGCAGGGAATGA+TGG | + | chr4_2:17029662-17029681 | None:intergenic | 50.0% | |
! | ATCATTCCCTGCTGGTCTCA+AGG | - | chr4_2:17029661-17029680 | Msa0591990:CDS | 50.0% |
GCAATAACCTTGAGACCAGC+AGG | + | chr4_2:17029671-17029690 | None:intergenic | 50.0% | |
CAAAGAAGGCCCGTTTGTCT+TGG | - | chr4_2:17030350-17030369 | Msa0591990:intron | 50.0% | |
TTCTGGCGACCAAGACAAAC+GGG | + | chr4_2:17030362-17030381 | None:intergenic | 50.0% | |
GATGTTCCAGGTTTGGGTGT+AGG | - | chr4_2:17030549-17030568 | Msa0591990:CDS | 50.0% | |
ACATGTCCTACACCCAAACC+TGG | + | chr4_2:17030558-17030577 | None:intergenic | 50.0% | |
ACTGATCAGGACCGGAATGA+TGG | - | chr4_2:17030883-17030902 | Msa0591990:intron | 50.0% | |
!! | TGAGTGGATTGATTGCGGGA+CGG | - | chr4_2:17030915-17030934 | Msa0591990:CDS | 50.0% |
!! | CGAGGTTCTGGTTTGCCATT+TGG | - | chr4_2:17032537-17032556 | Msa0591990:intron | 50.0% |
! | CAATTCTGGAAGGAACACCG+AGG | - | chr4_2:17033644-17033663 | Msa0591990:intron | 50.0% |
ACGCCGCTCGCAAATTCAAA+AGG | - | chr4_2:17033719-17033738 | Msa0591990:intron | 50.0% | |
CGCCGCTCGCAAATTCAAAA+GGG | - | chr4_2:17033720-17033739 | Msa0591990:intron | 50.0% | |
CATTGGTCAAGCTGGTATCC+CGG | - | chr4_2:17033857-17033876 | Msa0591990:intron | 50.0% | |
AGTCTCATGGCCAGATGCTT+AGG | - | chr4_2:17033929-17033948 | Msa0591990:intron | 50.0% | |
GTCTCATGGCCAGATGCTTA+GGG | - | chr4_2:17033930-17033949 | Msa0591990:intron | 50.0% | |
CAGTCATGTCCCTAAGCATC+TGG | + | chr4_2:17033942-17033961 | None:intergenic | 50.0% | |
AGGGACATGACTGTAAGAGG+AGG | - | chr4_2:17033949-17033968 | Msa0591990:intron | 50.0% | |
GAACATATGCTTTCCGGCAC+TGG | + | chr4_2:17034007-17034026 | None:intergenic | 50.0% | |
AAATCTACGAAGGCGAAGCG+TGG | + | chr4_2:17034029-17034048 | None:intergenic | 50.0% | |
ACGCTTCGCCTTCGTAGATT+TGG | - | chr4_2:17034028-17034047 | Msa0591990:intron | 50.0% | |
!! | CTGACTTCGTTGGTGATGGT+GGG | + | chr4_2:17034056-17034075 | None:intergenic | 50.0% |
!! | TCTGACTTCGTTGGTGATGG+TGG | + | chr4_2:17034057-17034076 | None:intergenic | 50.0% |
! | GGTTCTGACTTCGTTGGTGA+TGG | + | chr4_2:17034060-17034079 | None:intergenic | 50.0% |
! | TACCGAGCTCTAACTTGTGG+GGG | + | chr4_2:17034295-17034314 | None:intergenic | 50.0% |
! | CTACCGAGCTCTAACTTGTG+GGG | + | chr4_2:17034296-17034315 | None:intergenic | 50.0% |
AAACGAGGGGTTAGAAGGAG+TGG | - | chr4_2:17034973-17034992 | Msa0591990:intron | 50.0% | |
GGGTTAGAAGGAGTGGACAT+TGG | - | chr4_2:17034980-17034999 | Msa0591990:intron | 50.0% | |
CTCACTTGAGTGTGCCTCTA+GGG | - | chr4_2:17035201-17035220 | Msa0591990:intron | 50.0% | |
AGGGAATACGAACCACGTTG+TGG | + | chr4_2:17035232-17035251 | None:intergenic | 50.0% | |
GGGCAAGTCCAATTCGTTGA+GGG | + | chr4_2:17035251-17035270 | None:intergenic | 50.0% | |
AGGGCAAGTCCAATTCGTTG+AGG | + | chr4_2:17035252-17035271 | None:intergenic | 50.0% | |
CTCTCCAACAGGTGAACTGT+GGG | + | chr4_2:17035445-17035464 | None:intergenic | 50.0% | |
CAATAACCTTGAGACCGGCT+GGG | + | chr4_2:17036441-17036460 | None:intergenic | 50.0% | |
CAAAGAAGGCCCGTTTGTCT+TGG | - | chr4_2:17030350-17030369 | Msa0591990:intron | 50.0% | |
TTCTGGCGACCAAGACAAAC+GGG | + | chr4_2:17030362-17030381 | None:intergenic | 50.0% | |
GTTCTGGCGACCAAGACAAA+CGG | + | chr4_2:17037173-17037192 | None:intergenic | 50.0% | |
AGAAACCGCTGATGCAGTTC+TGG | + | chr4_2:17037189-17037208 | None:intergenic | 50.0% | |
AGAAAACTCTGGTCCTGCTC+CGG | + | chr4_2:17037889-17037908 | None:intergenic | 50.0% | |
CGACACACGACAACAATGGA+TGG | - | chr4_2:17037942-17037961 | Msa0591990:CDS | 50.0% | |
GACAACCCATCATTCCCTGC+TGG | - | chr4_2:17029653-17029672 | Msa0591990:CDS | 55.0% | |
CTGAGCTGACTGATCAGGAC+CGG | - | chr4_2:17030875-17030894 | Msa0591990:intron | 55.0% | |
!! | GAGTGGATTGATTGCGGGAC+GGG | - | chr4_2:17030916-17030935 | Msa0591990:CDS | 55.0% |
ACATGCTAGCGAGGAGGTAG+AGG | + | chr4_2:17031952-17031971 | None:intergenic | 55.0% | |
GCACATTGCTCAGGGAACTC+TGG | - | chr4_2:17032011-17032030 | Msa0591990:intron | 55.0% | |
! | GGTATCCCGGTCTGAAATGC+CGG | - | chr4_2:17033870-17033889 | Msa0591990:intron | 55.0% |
TCCAAGCCGGCATTTCAGAC+CGG | + | chr4_2:17033879-17033898 | None:intergenic | 55.0% | |
! | GGTGGGCTCCAAATCTACGA+AGG | + | chr4_2:17034039-17034058 | None:intergenic | 55.0% |
!! | GGCACTGGTTCTGACTTCGT+TGG | + | chr4_2:17034066-17034085 | None:intergenic | 55.0% |
TCCCCCCACAAGTTAGAGCT+CGG | - | chr4_2:17034290-17034309 | Msa0591990:intron | 55.0% | |
! | ACCGAGCTCTAACTTGTGGG+GGG | + | chr4_2:17034294-17034313 | None:intergenic | 55.0% |
GCTCACTTGAGTGTGCCTCT+AGG | - | chr4_2:17035200-17035219 | Msa0591990:intron | 55.0% | |
ACGTTGTGGAGACACCCTAG+AGG | + | chr4_2:17035218-17035237 | None:intergenic | 55.0% | |
! | TCTAGGGTGTCTCCACAACG+TGG | - | chr4_2:17035217-17035236 | Msa0591990:intron | 55.0% |
GCTCTCCAACAGGTGAACTG+TGG | + | chr4_2:17035446-17035465 | None:intergenic | 55.0% | |
AAGGTCCGGGGTTTGAACCT+CGG | + | chr4_2:17035631-17035650 | None:intergenic | 55.0% | |
GCTTCTCTATTCCCGCTGTC+TGG | - | chr4_2:17036014-17036033 | Msa0591990:intron | 55.0% | |
! | TCAACTAAGGCGCCAGACAG+CGG | + | chr4_2:17036029-17036048 | None:intergenic | 55.0% |
GACAACCCATCATTCCCAGC+CGG | - | chr4_2:17036424-17036443 | Msa0591990:intron | 55.0% | |
TGAGACCGGCTGGGAATGAT+GGG | + | chr4_2:17036432-17036451 | None:intergenic | 55.0% | |
TTGAGACCGGCTGGGAATGA+TGG | + | chr4_2:17036433-17036452 | None:intergenic | 55.0% | |
ATCATTCCCAGCCGGTCTCA+AGG | - | chr4_2:17036432-17036451 | Msa0591990:intron | 55.0% | |
GCAATAACCTTGAGACCGGC+TGG | + | chr4_2:17036442-17036461 | None:intergenic | 55.0% | |
TACTCACTCAATGCCGGAGC+AGG | - | chr4_2:17037873-17037892 | Msa0591990:intron | 55.0% | |
CCAAGCCGGCATTTCAGACC+GGG | + | chr4_2:17033878-17033897 | None:intergenic | 60.0% | |
! | CAACTAAGGCGCCAGACAGC+GGG | + | chr4_2:17036028-17036047 | None:intergenic | 60.0% |
GGTCGCCAGAACTGCATCAG+CGG | - | chr4_2:17037181-17037200 | Msa0591990:intron | 60.0% | |
! | CCCGGTCTGAAATGCCGGCT+TGG | - | chr4_2:17033875-17033894 | Msa0591990:intron | 65.0% |
GGTGGCCGAGGTTCAAACCC+CGG | - | chr4_2:17035623-17035642 | Msa0591990:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 17029638 | 17038059 | 17029638 | ID=Msa0591990;Name=Msa0591990 |
chr4_2 | mRNA | 17029638 | 17038059 | 17029638 | ID=Msa0591990-mRNA-1;Parent=Msa0591990;Name=Msa0591990-mRNA-1;_AED=0.14;_eAED=0.15;_QI=0|0|0|1|0.77|0.8|10|0|547 |
chr4_2 | exon | 17037942 | 17038059 | 17037942 | ID=Msa0591990-mRNA-1:exon:4948;Parent=Msa0591990-mRNA-1 |
chr4_2 | exon | 17037664 | 17037813 | 17037664 | ID=Msa0591990-mRNA-1:exon:4947;Parent=Msa0591990-mRNA-1 |
chr4_2 | exon | 17037336 | 17037575 | 17037336 | ID=Msa0591990-mRNA-1:exon:4946;Parent=Msa0591990-mRNA-1 |
chr4_2 | exon | 17037104 | 17037180 | 17037104 | ID=Msa0591990-mRNA-1:exon:4945;Parent=Msa0591990-mRNA-1 |
chr4_2 | exon | 17036793 | 17036982 | 17036793 | ID=Msa0591990-mRNA-1:exon:4944;Parent=Msa0591990-mRNA-1 |
chr4_2 | exon | 17031171 | 17031281 | 17031171 | ID=Msa0591990-mRNA-1:exon:4943;Parent=Msa0591990-mRNA-1 |
chr4_2 | exon | 17030889 | 17031038 | 17030889 | ID=Msa0591990-mRNA-1:exon:4942;Parent=Msa0591990-mRNA-1 |
chr4_2 | exon | 17030526 | 17030771 | 17030526 | ID=Msa0591990-mRNA-1:exon:4941;Parent=Msa0591990-mRNA-1 |
chr4_2 | exon | 17030291 | 17030367 | 17030291 | ID=Msa0591990-mRNA-1:exon:4940;Parent=Msa0591990-mRNA-1 |
chr4_2 | exon | 17029638 | 17029922 | 17029638 | ID=Msa0591990-mRNA-1:exon:4939;Parent=Msa0591990-mRNA-1 |
chr4_2 | CDS | 17037942 | 17038059 | 17037942 | ID=Msa0591990-mRNA-1:cds;Parent=Msa0591990-mRNA-1 |
chr4_2 | CDS | 17037664 | 17037813 | 17037664 | ID=Msa0591990-mRNA-1:cds;Parent=Msa0591990-mRNA-1 |
chr4_2 | CDS | 17037336 | 17037575 | 17037336 | ID=Msa0591990-mRNA-1:cds;Parent=Msa0591990-mRNA-1 |
chr4_2 | CDS | 17037104 | 17037180 | 17037104 | ID=Msa0591990-mRNA-1:cds;Parent=Msa0591990-mRNA-1 |
chr4_2 | CDS | 17036793 | 17036982 | 17036793 | ID=Msa0591990-mRNA-1:cds;Parent=Msa0591990-mRNA-1 |
chr4_2 | CDS | 17031171 | 17031281 | 17031171 | ID=Msa0591990-mRNA-1:cds;Parent=Msa0591990-mRNA-1 |
chr4_2 | CDS | 17030889 | 17031038 | 17030889 | ID=Msa0591990-mRNA-1:cds;Parent=Msa0591990-mRNA-1 |
chr4_2 | CDS | 17030526 | 17030771 | 17030526 | ID=Msa0591990-mRNA-1:cds;Parent=Msa0591990-mRNA-1 |
chr4_2 | CDS | 17030291 | 17030367 | 17030291 | ID=Msa0591990-mRNA-1:cds;Parent=Msa0591990-mRNA-1 |
chr4_2 | CDS | 17029638 | 17029922 | 17029638 | ID=Msa0591990-mRNA-1:cds;Parent=Msa0591990-mRNA-1 |
Gene Sequence |
Protein sequence |