AlfalfaGEDB | Msa0593220

M. sativa cultivar zhongmu-4 / Msa0593220

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0593220	KAG4954701.1	55.721	201	57	4	4	174	23	221	1.03e-56	195

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0593220	sp\|Q9SY66\|FRS11_ARATH	30.000	150	84	4	76	206	46	193	2.38e-12	69.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0593220	A0A2K3N750	64.671	167	43	3	22	174	79	243	1.10e-56	198

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0593220	TF	FAR1

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0593220	MtrunA17_Chr2g0276841	28.696	115	63	2	77	174	69	181	7.04e-12	64.3

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0593220	AT1G10240.2	30.000	150	84	4	76	206	46	193	2.42e-13	69.3
Msa0593220	AT1G10240.1	30.000	150	84	4	76	206	46	193	2.42e-13	69.3

Showing 1 to 2 of 2 entries

Previous1Next

Find 39 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGAGAAACATCAAAGT+GGG	0.564413	4_2:-19123082	Msa0593220:CDS
AACAAAATGAAATTATTAGT+AGG	0.476389	4_2:-19123173	Msa0593220:CDS
AACACACCTCTGATTGGGTT+AGG	0.509238	4_2:+19122959	None:intergenic
AAGATGGGTGTGGGTGGTTT+GGG	0.277663	4_2:-19119876	Msa0593220:CDS
AATGAAATTATTAGTAGGCG+TGG	0.548475	4_2:-19123168	Msa0593220:CDS
AATGAGAAGGAAGATGGGTG+TGG	0.492422	4_2:-19119886	Msa0593220:CDS
AGAAGGAAGATGGGTGTGGG+TGG	0.603746	4_2:-19119882	Msa0593220:CDS
AGGATCTCGTGGCATATCTA+TGG	0.353740	4_2:-19119924	Msa0593220:CDS
AGTCAGAATGTTGAGATCAA+TGG	0.421871	4_2:-19123357	Msa0593220:CDS
AGTCTGTAAATATTGGCAAA+TGG	0.499427	4_2:-19119825	Msa0593220:CDS

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGATATGCATATCAACA+TGG	-	chr4_2:19120124-19120143	Msa0593220:intron	30.0%
AGTGATATGCATATCAACAT+GGG	-	chr4_2:19120125-19120144	Msa0593220:intron	30.0%
AATGAAATTATTAGTAGGCG+TGG	-	chr4_2:19120181-19120200	Msa0593220:intron	30.0%
AAAGAGAGAAACATCAAAGT+GGG	-	chr4_2:19120267-19120286	Msa0593220:intron	30.0%
TAAATAACACACCTCTGATT+GGG	+	chr4_2:19120398-19120417	None:intergenic	30.0%
GCTTATCAAACTATCTTAGA+AGG	-	chr4_2:19120421-19120440	Msa0593220:intron	30.0%
TGTACACTGCTAGAAAAATT+AGG	-	chr4_2:19120533-19120552	Msa0593220:intron	30.0%
GAAAAATTAGGAATAGAGAC+GGG	-	chr4_2:19120545-19120564	Msa0593220:intron	30.0%
TCTTAACTTTCAGAAAAGTG+TGG	+	chr4_2:19120749-19120768	None:intergenic	30.0%
TTAAGAAGAATCCATCTTTG+TGG	-	chr4_2:19120763-19120782	Msa0593220:intron	30.0%

Showing 1 to 10 of 229 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	19119780	19123591	19119780	ID=Msa0593220;Name=Msa0593220
chr4_2	mRNA	19119780	19123591	19119780	ID=Msa0593220-mRNA-1;Parent=Msa0593220;Name=Msa0593220-mRNA-1;_AED=0.45;_eAED=0.51;_QI=14\|0\|0\|0.75\|0\|0\|4\|0\|229
chr4_2	exon	19123512	19123591	19123512	ID=Msa0593220-mRNA-1:exon:5539;Parent=Msa0593220-mRNA-1
chr4_2	exon	19123246	19123463	19123246	ID=Msa0593220-mRNA-1:exon:5538;Parent=Msa0593220-mRNA-1
chr4_2	exon	19122966	19123203	19122966	ID=Msa0593220-mRNA-1:exon:5537;Parent=Msa0593220-mRNA-1
chr4_2	exon	19119780	19119944	19119780	ID=Msa0593220-mRNA-1:exon:5536;Parent=Msa0593220-mRNA-1
chr4_2	five_prime_UTR	19123578	19123591	19123578	ID=Msa0593220-mRNA-1:five_prime_utr;Parent=Msa0593220-mRNA-1
chr4_2	CDS	19123512	19123577	19123512	ID=Msa0593220-mRNA-1:cds;Parent=Msa0593220-mRNA-1
chr4_2	CDS	19123246	19123463	19123246	ID=Msa0593220-mRNA-1:cds;Parent=Msa0593220-mRNA-1
chr4_2	CDS	19122966	19123203	19122966	ID=Msa0593220-mRNA-1:cds;Parent=Msa0593220-mRNA-1
chr4_2	CDS	19119780	19119944	19119780	ID=Msa0593220-mRNA-1:cds;Parent=Msa0593220-mRNA-1

Gene Sequence

>Msa0593220

ATGAATATTAGTACTTCTATAGACATGAGTAACAATATAAGAAATTTTGATTGGAATGAATGTCAGCATTTTGATTGTAATATTGTGGCGAAAGATGTGTTAGAAGGTGATATAATTAGTAGTATTGAGAAACAAAATCTTGTACCTTCTAGTCAGAATGTTGAGATCAATGGGTTTTTAGAAGAAGAAGTATATAATGATGGAGCGAGTAATGAGACAAATATTTGTCTTCCTTTTGTTGGTCAAATTTTTCTTAGAGAAGAAGAAGCATTTGTCTTTTATAAATTCATCAAACAAAATGAAATTATTAGTAGGCGTGGTTTTTTTTGCAATCGTGAAGGTAAAGTCCCTTTGAAAATCATAGAACCATCAAAAGAGCAGAGAAAGAGAGAAACATCAAAGTGGGAATGTAAAACTCATTTGCGAATTTTATTACAAAAGTCTCATGATATATTTCCAAGTGAATGGCGAGCTACAAAGTTTGTTGTTGAACATACCCATGATTTCCTAACCCAATCAGAGGATCTCGTGGCATATCTATGGATGTTCCACTTTGGGAATGAGAAGGAAGATGGGTGTGGGTGGTTTGGGATTGAGAAGAAGGAGATGATGCAGATGCAGTCTGTAAATATTGGCAAATGGTTTGTGCATGGCTTGTTTGGGAATGAGAATGAGATGGGGCATAAA

Protein sequence

>Msa0593220

MNISTSIDMSNNIRNFDWNECQHFDCNIVAKDVLEGDIISSIEKQNLVPSSQNVEINGFLEEEVYNDGASNETNICLPFVGQIFLREEEAFVFYKFIKQNEIISRRGFFCNREGKVPLKIIEPSKEQRKRETSKWECKTHLRILLQKSHDIFPSEWRATKFVVEHTHDFLTQSEDLVAYLWMFHFGNEKEDGCGWFGIEKKEMMQMQSVNIGKWFVHGLFGNENEMGHK