Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593220 | KAG4954701.1 | 55.721 | 201 | 57 | 4 | 4 | 174 | 23 | 221 | 1.03e-56 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593220 | sp|Q9SY66|FRS11_ARATH | 30.000 | 150 | 84 | 4 | 76 | 206 | 46 | 193 | 2.38e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593220 | A0A2K3N750 | 64.671 | 167 | 43 | 3 | 22 | 174 | 79 | 243 | 1.10e-56 | 198 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0593220 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593220 | MtrunA17_Chr2g0276841 | 28.696 | 115 | 63 | 2 | 77 | 174 | 69 | 181 | 7.04e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593220 | AT1G10240.2 | 30.000 | 150 | 84 | 4 | 76 | 206 | 46 | 193 | 2.42e-13 | 69.3 |
| Msa0593220 | AT1G10240.1 | 30.000 | 150 | 84 | 4 | 76 | 206 | 46 | 193 | 2.42e-13 | 69.3 |
Find 39 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATGGGTGTGGGTGGTTT+GGG | 0.277663 | 4_2:-19119876 | Msa0593220:CDS |
| GAAGATGGGTGTGGGTGGTT+TGG | 0.286902 | 4_2:-19119877 | Msa0593220:CDS |
| ATCTATGGATGTTCCACTTT+GGG | 0.319532 | 4_2:-19119909 | Msa0593220:CDS |
| TGGTTTGTGCATGGCTTGTT+TGG | 0.333467 | 4_2:-19119805 | Msa0593220:CDS |
| AGGATCTCGTGGCATATCTA+TGG | 0.353740 | 4_2:-19119924 | Msa0593220:CDS |
| GTAAATAACACACCTCTGAT+TGG | 0.383800 | 4_2:+19122953 | None:intergenic |
| CAGATGCAGTCTGTAAATAT+TGG | 0.390364 | 4_2:-19119832 | Msa0593220:CDS |
| ATCTCAACATTCTGACTAGA+AGG | 0.414330 | 4_2:+19123363 | None:intergenic |
| CTGATTGGGTTAGGAAATCA+TGG | 0.421386 | 4_2:+19122968 | None:intergenic |
| AGTCAGAATGTTGAGATCAA+TGG | 0.421871 | 4_2:-19123357 | Msa0593220:CDS |
| GTCAGAATGTTGAGATCAAT+GGG | 0.435675 | 4_2:-19123356 | Msa0593220:CDS |
| GGTTTGTGCATGGCTTGTTT+GGG | 0.439142 | 4_2:-19119804 | Msa0593220:CDS |
| GTGGTTTGGGATTGAGAAGA+AGG | 0.456003 | 4_2:-19119863 | Msa0593220:CDS |
| TAAATAACACACCTCTGATT+GGG | 0.471160 | 4_2:+19122954 | None:intergenic |
| AACAAAATGAAATTATTAGT+AGG | 0.476389 | 4_2:-19123173 | Msa0593220:CDS |
| ATGATATATTTCCAAGTGAA+TGG | 0.479682 | 4_2:-19123020 | Msa0593220:CDS |
| GAAGAAGAAGTATATAATGA+TGG | 0.488626 | 4_2:-19123327 | Msa0593220:CDS |
| AATGAGAAGGAAGATGGGTG+TGG | 0.492422 | 4_2:-19119886 | Msa0593220:CDS |
| TTTGGGAATGAGAAGGAAGA+TGG | 0.494089 | 4_2:-19119892 | Msa0593220:CDS |
| TTTGTAGCTCGCCATTCACT+TGG | 0.494888 | 4_2:+19123009 | None:intergenic |
| TATCTATGGATGTTCCACTT+TGG | 0.495404 | 4_2:-19119910 | Msa0593220:CDS |
| AGTCTGTAAATATTGGCAAA+TGG | 0.499427 | 4_2:-19119825 | Msa0593220:CDS |
| AACACACCTCTGATTGGGTT+AGG | 0.509238 | 4_2:+19122959 | None:intergenic |
| CTTCCTTCTCATTCCCAAAG+TGG | 0.511124 | 4_2:+19119896 | None:intergenic |
| ATGAGAAGGAAGATGGGTGT+GGG | 0.530236 | 4_2:-19119885 | Msa0593220:CDS |
| AATGAAATTATTAGTAGGCG+TGG | 0.548475 | 4_2:-19123168 | Msa0593220:CDS |
| GTGGCGAAAGATGTGTTAGA+AGG | 0.548778 | 4_2:-19123423 | Msa0593220:CDS |
| AAAGAGAGAAACATCAAAGT+GGG | 0.564413 | 4_2:-19123082 | Msa0593220:CDS |
| TTTGGGAATGAGAATGAGAT+GGG | 0.573015 | 4_2:-19119787 | Msa0593220:CDS |
| GAAAGAGAGAAACATCAAAG+TGG | 0.591426 | 4_2:-19123083 | Msa0593220:CDS |
| GTTTGGGAATGAGAATGAGA+TGG | 0.592119 | 4_2:-19119788 | Msa0593220:CDS |
| GTTCCACTTTGGGAATGAGA+AGG | 0.599907 | 4_2:-19119899 | Msa0593220:CDS |
| TTGGGAATGAGAAGGAAGAT+GGG | 0.602458 | 4_2:-19119891 | Msa0593220:CDS |
| AGAAGGAAGATGGGTGTGGG+TGG | 0.603746 | 4_2:-19119882 | Msa0593220:CDS |
| ATTGGCAAATGGTTTGTGCA+TGG | 0.625005 | 4_2:-19119814 | Msa0593220:CDS |
| TGATTTCCTAACCCAATCAG+AGG | 0.654869 | 4_2:-19122965 | Msa0593220:intron |
| TTATCAATGGAAGGATCTCG+TGG | 0.676141 | 4_2:-19119935 | Msa0593220:intron |
| TGATTGGGTTAGGAAATCAT+GGG | 0.682733 | 4_2:+19122969 | None:intergenic |
| TTGGGAATGAGAATGAGATG+GGG | 0.721280 | 4_2:-19119786 | Msa0593220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAAAAAATATTTTAA+CGG | + | chr4_2:19122198-19122217 | None:intergenic | 0.0% |
| !! | AAAAATTTAAATAATTAATT+CGG | - | chr4_2:19122212-19122231 | Msa0593220:intron | 0.0% |
| !!! | TTTAATATTTTGATATTATG+TGG | + | chr4_2:19121096-19121115 | None:intergenic | 10.0% |
| !! | ACATAATATCAAAATATTAA+AGG | - | chr4_2:19121095-19121114 | Msa0593220:intron | 10.0% |
| !! | TAAAACATTATATAATTCTA+TGG | - | chr4_2:19123243-19123262 | Msa0593220:intron | 10.0% |
| !!! | ACAATATAAGAAATTTTGAT+TGG | - | chr4_2:19119825-19119844 | Msa0593220:CDS | 15.0% |
| !! | AACAAAATGAAATTATTAGT+AGG | - | chr4_2:19120176-19120195 | Msa0593220:intron | 15.0% |
| !!! | ATTTTTGAAAATGTATAAGT+TGG | - | chr4_2:19120458-19120477 | Msa0593220:intron | 15.0% |
| !! | TAGTATGAACATATTTAAAT+TGG | - | chr4_2:19122476-19122495 | Msa0593220:intron | 15.0% |
| !! | TCATAACTAATAAACTAAAT+AGG | + | chr4_2:19122596-19122615 | None:intergenic | 15.0% |
| !!! | ATTATAAAAAGAGCTTTAAT+AGG | + | chr4_2:19122737-19122756 | None:intergenic | 15.0% |
| !! | TTATACATAGAAACAACTTT+CGG | + | chr4_2:19120511-19120530 | None:intergenic | 20.0% |
| !! | GGAATATTAATTAATAGAGA+TGG | + | chr4_2:19120856-19120875 | None:intergenic | 20.0% |
| !!! | ATTGATGATAAACATTAGTT+TGG | + | chr4_2:19121124-19121143 | None:intergenic | 20.0% |
| !!! | TATTTTAGACAACTTTATGT+TGG | + | chr4_2:19121197-19121216 | None:intergenic | 20.0% |
| !!! | ATTTTTCTTTTCAAATTCAG+CGG | - | chr4_2:19121408-19121427 | Msa0593220:intron | 20.0% |
| !! | AATTGACAATGGTATTTATA+TGG | + | chr4_2:19121590-19121609 | None:intergenic | 20.0% |
| !!! | TCAAAATTTAAGATACGATA+CGG | - | chr4_2:19121845-19121864 | Msa0593220:intron | 20.0% |
| !!! | ACAAGAAGTATAATTTTAAG+CGG | - | chr4_2:19122002-19122021 | Msa0593220:intron | 20.0% |
| !!! | AGTTTGGTTTAATGATTTTA+AGG | + | chr4_2:19123074-19123093 | None:intergenic | 20.0% |
| !! | AAATCATTAAACCAAACTAA+AGG | - | chr4_2:19123076-19123095 | Msa0593220:CDS | 20.0% |
| !!! | AAAATCTTCAAGGAAAATTT+TGG | + | chr4_2:19123148-19123167 | None:intergenic | 20.0% |
| !!! | GCATTTTGATTGTAATATTG+TGG | - | chr4_2:19119907-19119926 | Msa0593220:CDS | 25.0% |
| !! | GAAGAAGAAGTATATAATGA+TGG | - | chr4_2:19120022-19120041 | Msa0593220:intron | 25.0% |
| !! | AATATTTGTCTTCCTTTTGT+TGG | - | chr4_2:19120061-19120080 | Msa0593220:intron | 25.0% |
| ! | AGAAAAATTTGACCAACAAA+AGG | + | chr4_2:19120076-19120095 | None:intergenic | 25.0% |
| !!! | ATGGTTCTATGATTTTCAAA+GGG | + | chr4_2:19120234-19120253 | None:intergenic | 25.0% |
| ! | ATGATATATTTCCAAGTGAA+TGG | - | chr4_2:19120329-19120348 | Msa0593220:intron | 25.0% |
| ! | AGAAAAATTAGGAATAGAGA+CGG | - | chr4_2:19120544-19120563 | Msa0593220:intron | 25.0% |
| !!! | CGGATTTTTTATATTAGAGA+CGG | + | chr4_2:19120801-19120820 | None:intergenic | 25.0% |
| !!! | TTGTGACAAATTTTTAGAGA+CGG | + | chr4_2:19120821-19120840 | None:intergenic | 25.0% |
| !! | TCTCTAAAAATTTGTCACAA+AGG | - | chr4_2:19120821-19120840 | Msa0593220:intron | 25.0% |
| !!! | TGTGGTGATTTTTTGTTTTT+AGG | + | chr4_2:19121078-19121097 | None:intergenic | 25.0% |
| ! | TTGTTAGATCAAACATATCA+TGG | + | chr4_2:19121227-19121246 | None:intergenic | 25.0% |
| ! | GGTATTTATATGGAAATTGT+TGG | + | chr4_2:19121580-19121599 | None:intergenic | 25.0% |
| ! | ATTATACTTCTTGTGAATGA+AGG | + | chr4_2:19121996-19122015 | None:intergenic | 25.0% |
| !! | TTTACTCTTCATCTTTTTCT+AGG | - | chr4_2:19122110-19122129 | Msa0593220:intron | 25.0% |
| !! | TATGTTTTATAGAGTGCAAT+TGG | + | chr4_2:19122439-19122458 | None:intergenic | 25.0% |
| ! | CAGAGTACATAGAAAAAAAA+CGG | + | chr4_2:19122526-19122545 | None:intergenic | 25.0% |
| !! | ATAAAAAGAGCTTTAATAGG+CGG | + | chr4_2:19122734-19122753 | None:intergenic | 25.0% |
| !! | TTTTGTATGCTAAATTCAAG+TGG | + | chr4_2:19122781-19122800 | None:intergenic | 25.0% |
| ! | ATGAAGCTATGTATTTGAAA+AGG | - | chr4_2:19122810-19122829 | Msa0593220:intron | 25.0% |
| !! | AATTTTCTATCATGTAGCAT+AGG | + | chr4_2:19123026-19123045 | None:intergenic | 25.0% |
| ! | GAAAGATGTAAAAGAAAATG+AGG | + | chr4_2:19123107-19123126 | None:intergenic | 25.0% |
| ! | TGCTATAACAAAAATCTTCA+AGG | + | chr4_2:19123158-19123177 | None:intergenic | 25.0% |
| !! | ATAGATCAGATGGATAATTT+TGG | + | chr4_2:19123323-19123342 | None:intergenic | 25.0% |
| ! | TGTTTGTGAATTGTTATCAA+TGG | - | chr4_2:19123401-19123420 | Msa0593220:CDS | 25.0% |
| !! | TTTTGATTGGAATGAATGTC+AGG | - | chr4_2:19119838-19119857 | Msa0593220:CDS | 30.0% |
| AAGTGATATGCATATCAACA+TGG | - | chr4_2:19120124-19120143 | Msa0593220:intron | 30.0% | |
| AGTGATATGCATATCAACAT+GGG | - | chr4_2:19120125-19120144 | Msa0593220:intron | 30.0% | |
| AATGAAATTATTAGTAGGCG+TGG | - | chr4_2:19120181-19120200 | Msa0593220:intron | 30.0% | |
| !! | GATGGTTCTATGATTTTCAA+AGG | + | chr4_2:19120235-19120254 | None:intergenic | 30.0% |
| AAAGAGAGAAACATCAAAGT+GGG | - | chr4_2:19120267-19120286 | Msa0593220:intron | 30.0% | |
| TAAATAACACACCTCTGATT+GGG | + | chr4_2:19120398-19120417 | None:intergenic | 30.0% | |
| ! | TCTAAGATAGTTTGATAAGC+CGG | + | chr4_2:19120421-19120440 | None:intergenic | 30.0% |
| GCTTATCAAACTATCTTAGA+AGG | - | chr4_2:19120421-19120440 | Msa0593220:intron | 30.0% | |
| TGTACACTGCTAGAAAAATT+AGG | - | chr4_2:19120533-19120552 | Msa0593220:intron | 30.0% | |
| GAAAAATTAGGAATAGAGAC+GGG | - | chr4_2:19120545-19120564 | Msa0593220:intron | 30.0% | |
| ! | CTTAACTTTCAGAAAAGTGT+GGG | + | chr4_2:19120748-19120767 | None:intergenic | 30.0% |
| TCTTAACTTTCAGAAAAGTG+TGG | + | chr4_2:19120749-19120768 | None:intergenic | 30.0% | |
| TTAAGAAGAATCCATCTTTG+TGG | - | chr4_2:19120763-19120782 | Msa0593220:intron | 30.0% | |
| !!! | TTGTTTTAGCACTAAACAGT+GGG | + | chr4_2:19120953-19120972 | None:intergenic | 30.0% |
| !!! | ATTGTTTTAGCACTAAACAG+TGG | + | chr4_2:19120954-19120973 | None:intergenic | 30.0% |
| !! | ATTTTGATACCCATCAAGTT+AGG | - | chr4_2:19121033-19121052 | Msa0593220:intron | 30.0% |
| ! | AACTTATCTTGGTAACTACT+AGG | + | chr4_2:19121150-19121169 | None:intergenic | 30.0% |
| ! | GATTGATGGTAAACTTATCT+TGG | + | chr4_2:19121161-19121180 | None:intergenic | 30.0% |
| !! | TTATGTTGGTAACTACTAAG+TGG | + | chr4_2:19121183-19121202 | None:intergenic | 30.0% |
| AGAAACACTAAAACAGAAGA+TGG | + | chr4_2:19121380-19121399 | None:intergenic | 30.0% | |
| ! | GTTTCTCAAACATTTGAGTT+TGG | - | chr4_2:19121653-19121672 | Msa0593220:intron | 30.0% |
| GAGACAATGTTGTAAACATT+CGG | + | chr4_2:19122085-19122104 | None:intergenic | 30.0% | |
| TAATTAATTCGGATACTTCG+TGG | - | chr4_2:19122223-19122242 | Msa0593220:intron | 30.0% | |
| AATTAATTCGGATACTTCGT+GGG | - | chr4_2:19122224-19122243 | Msa0593220:intron | 30.0% | |
| ACAAACATCATAGACCAAAA+GGG | + | chr4_2:19122386-19122405 | None:intergenic | 30.0% | |
| TCGTATAATTCAAACCATGT+TGG | - | chr4_2:19122405-19122424 | Msa0593220:intron | 30.0% | |
| !! | CATACTAACTTGTTGTTTGT+TGG | + | chr4_2:19122463-19122482 | None:intergenic | 30.0% |
| !!! | CGTTTTTTTTCTATGTACTC+TGG | - | chr4_2:19122524-19122543 | Msa0593220:intron | 30.0% |
| TGAAACAATTGAAGGCTAAA+TGG | + | chr4_2:19122629-19122648 | None:intergenic | 30.0% | |
| TGTAGACTTGAAACAATTGA+AGG | + | chr4_2:19122637-19122656 | None:intergenic | 30.0% | |
| GTTAAAAAATGCCTTCTTCA+AGG | + | chr4_2:19122694-19122713 | None:intergenic | 30.0% | |
| ! | TAAAAAGAGCTTTAATAGGC+GGG | + | chr4_2:19122733-19122752 | None:intergenic | 30.0% |
| ! | ATGAAGCTTCATTGTTACTT+AGG | + | chr4_2:19122851-19122870 | None:intergenic | 30.0% |
| ACAGAGGTAGTTACATAAAT+CGG | + | chr4_2:19122993-19123012 | None:intergenic | 30.0% | |
| ATTTATGTAACTACCTCTGT+TGG | - | chr4_2:19122993-19123012 | Msa0593220:CDS | 30.0% | |
| ATGAGGATATACCTTTAGTT+TGG | + | chr4_2:19123090-19123109 | None:intergenic | 30.0% | |
| !! | TCTTCAAGGAAAATTTTGGT+GGG | + | chr4_2:19123144-19123163 | None:intergenic | 30.0% |
| ! | ATCTTCAAGGAAAATTTTGG+TGG | + | chr4_2:19123145-19123164 | None:intergenic | 30.0% |
| ! | TTTTGGATAAGATCAGAACT+TGG | + | chr4_2:19123306-19123325 | None:intergenic | 30.0% |
| AAGGATGATATATCTATGTC+TGG | - | chr4_2:19123375-19123394 | Msa0593220:CDS | 30.0% | |
| TGTGAATTGTTATCAATGGA+AGG | - | chr4_2:19123405-19123424 | Msa0593220:CDS | 30.0% | |
| AGTCTGTAAATATTGGCAAA+TGG | - | chr4_2:19123524-19123543 | Msa0593220:CDS | 30.0% | |
| ATCTCAACATTCTGACTAGA+AGG | + | chr4_2:19119989-19120008 | None:intergenic | 35.0% | |
| AGTCAGAATGTTGAGATCAA+TGG | - | chr4_2:19119992-19120011 | Msa0593220:intron | 35.0% | |
| GTCAGAATGTTGAGATCAAT+GGG | - | chr4_2:19119993-19120012 | Msa0593220:intron | 35.0% | |
| ACATGGGTTCTCAATTAACA+AGG | - | chr4_2:19120141-19120160 | Msa0593220:intron | 35.0% | |
| CATGGGTTCTCAATTAACAA+GGG | - | chr4_2:19120142-19120161 | Msa0593220:intron | 35.0% | |
| !!! | GGTTTTTTTTGCAATCGTGA+AGG | - | chr4_2:19120202-19120221 | Msa0593220:intron | 35.0% |
| GAAAGAGAGAAACATCAAAG+TGG | - | chr4_2:19120266-19120285 | Msa0593220:intron | 35.0% | |
| ! | TGATTGGGTTAGGAAATCAT+GGG | + | chr4_2:19120383-19120402 | None:intergenic | 35.0% |
| GTAAATAACACACCTCTGAT+TGG | + | chr4_2:19120399-19120418 | None:intergenic | 35.0% | |
| !! | ATCAGAGGTGTGTTATTTAC+CGG | - | chr4_2:19120399-19120418 | Msa0593220:intron | 35.0% |
| ACAGAATCAGAGACGAAATA+AGG | - | chr4_2:19120618-19120637 | Msa0593220:intron | 35.0% | |
| ! | GTCTCTAAACTCTTTAGAGA+CGG | - | chr4_2:19120659-19120678 | Msa0593220:intron | 35.0% |
| !! | TCAGTTTGTCTCTGTTTTGA+CGG | + | chr4_2:19120877-19120896 | None:intergenic | 35.0% |
| ACTAAACAGTGGGAATATTG+AGG | + | chr4_2:19120943-19120962 | None:intergenic | 35.0% | |
| ! | TTATCTTGGTAACTACTAGG+TGG | + | chr4_2:19121147-19121166 | None:intergenic | 35.0% |
| !! | GTAACTACTAAGTGGATTGA+TGG | + | chr4_2:19121175-19121194 | None:intergenic | 35.0% |
| ! | GATAATGGTAACAACGAGAT+AGG | + | chr4_2:19121286-19121305 | None:intergenic | 35.0% |
| ! | TGAACTGAAGTGTTCACATT+AGG | - | chr4_2:19121322-19121341 | Msa0593220:intron | 35.0% |
| ! | TTTTTCCGAAGAAGCTACAT+CGG | - | chr4_2:19121465-19121484 | Msa0593220:intron | 35.0% |
| !! | TTGGAAGCATTAACAAGAAG+GGG | + | chr4_2:19121561-19121580 | None:intergenic | 35.0% |
| !! | GTTGGAAGCATTAACAAGAA+GGG | + | chr4_2:19121562-19121581 | None:intergenic | 35.0% |
| !! | TGTTGGAAGCATTAACAAGA+AGG | + | chr4_2:19121563-19121582 | None:intergenic | 35.0% |
| CCTACTGAAGAAATTGACAA+TGG | + | chr4_2:19121601-19121620 | None:intergenic | 35.0% | |
| CCATTGTCAATTTCTTCAGT+AGG | - | chr4_2:19121598-19121617 | Msa0593220:intron | 35.0% | |
| TTTGAGAAACACTCTCAAAG+TGG | + | chr4_2:19121643-19121662 | None:intergenic | 35.0% | |
| ! | ATTTAAGATACGATACGGCT+AGG | - | chr4_2:19121850-19121869 | Msa0593220:intron | 35.0% |
| ACAATGTTGTAAACATTCGG+TGG | + | chr4_2:19122082-19122101 | None:intergenic | 35.0% | |
| TAAGTATCCTTGTGTATCTG+CGG | - | chr4_2:19122156-19122175 | Msa0593220:intron | 35.0% | |
| GACAAACATCATAGACCAAA+AGG | + | chr4_2:19122387-19122406 | None:intergenic | 35.0% | |
| AATTGGATAGAGAACCAACA+TGG | + | chr4_2:19122422-19122441 | None:intergenic | 35.0% | |
| ! | TCTATGTACTCTGGAAGATA+TGG | - | chr4_2:19122533-19122552 | Msa0593220:intron | 35.0% |
| ! | CTAAATAGGCAGTCTAAAGT+TGG | + | chr4_2:19122582-19122601 | None:intergenic | 35.0% |
| ! | AAAAAGAGCTTTAATAGGCG+GGG | + | chr4_2:19122732-19122751 | None:intergenic | 35.0% |
| CATAGGTAATATACCAACAG+AGG | + | chr4_2:19123009-19123028 | None:intergenic | 35.0% | |
| !! | CTTCAAGGAAAATTTTGGTG+GGG | + | chr4_2:19123143-19123162 | None:intergenic | 35.0% |
| ! | TTTCAGCTTTTATCCACAAG+AGG | + | chr4_2:19123191-19123210 | None:intergenic | 35.0% |
| ACACCGAATAACATCAAATG+GGG | + | chr4_2:19123354-19123373 | None:intergenic | 35.0% | |
| CACACCGAATAACATCAAAT+GGG | + | chr4_2:19123355-19123374 | None:intergenic | 35.0% | |
| TCACACCGAATAACATCAAA+TGG | + | chr4_2:19123356-19123375 | None:intergenic | 35.0% | |
| !! | TTTGATGTTATTCGGTGTGA+AGG | - | chr4_2:19123356-19123375 | Msa0593220:CDS | 35.0% |
| TATCTATGGATGTTCCACTT+TGG | - | chr4_2:19123439-19123458 | Msa0593220:CDS | 35.0% | |
| ATCTATGGATGTTCCACTTT+GGG | - | chr4_2:19123440-19123459 | Msa0593220:CDS | 35.0% | |
| CAGATGCAGTCTGTAAATAT+TGG | - | chr4_2:19123517-19123536 | Msa0593220:CDS | 35.0% | |
| TTTGGGAATGAGAATGAGAT+GGG | - | chr4_2:19123562-19123581 | Msa0593220:exon | 35.0% | |
| TGATTGGAATGAATGTCAGG+TGG | - | chr4_2:19119841-19119860 | Msa0593220:CDS | 40.0% | |
| ! | TCAGGTGGAAGATTTTTCTG+TGG | - | chr4_2:19119856-19119875 | Msa0593220:CDS | 40.0% |
| ! | CTCTTTCTCTGCTCTTTTGA+TGG | + | chr4_2:19120253-19120272 | None:intergenic | 40.0% |
| ! | CTGATTGGGTTAGGAAATCA+TGG | + | chr4_2:19120384-19120403 | None:intergenic | 40.0% |
| TGATTTCCTAACCCAATCAG+AGG | - | chr4_2:19120384-19120403 | Msa0593220:intron | 40.0% | |
| ATTCTGTCTCTGATCAGAGA+CGG | + | chr4_2:19120696-19120715 | None:intergenic | 40.0% | |
| AGAATCCATCTTTGTGGAGA+CGG | - | chr4_2:19120769-19120788 | Msa0593220:intron | 40.0% | |
| ! | ATTTTCCGTCTCCACAAAGA+TGG | + | chr4_2:19120777-19120796 | None:intergenic | 40.0% |
| ATACCCATCAAGTTAGGAGA+AGG | - | chr4_2:19121039-19121058 | Msa0593220:intron | 40.0% | |
| TACCCATCAAGTTAGGAGAA+GGG | - | chr4_2:19121040-19121059 | Msa0593220:intron | 40.0% | |
| GAGATAGGTGAACTTTAGCT+TGG | + | chr4_2:19121271-19121290 | None:intergenic | 40.0% | |
| TTCGGAAAAAGTTGCTGCTA+TGG | + | chr4_2:19121455-19121474 | None:intergenic | 40.0% | |
| TTCTACCGATGTAGCTTCTT+CGG | + | chr4_2:19121473-19121492 | None:intergenic | 40.0% | |
| GCTACATCGGTAGAAATTGA+AGG | - | chr4_2:19121478-19121497 | Msa0593220:intron | 40.0% | |
| TCGGTAGAAATTGAAGGTGA+TGG | - | chr4_2:19121484-19121503 | Msa0593220:intron | 40.0% | |
| TAGCTGTATGCTATGAAGTC+CGG | + | chr4_2:19122326-19122345 | None:intergenic | 40.0% | |
| CAAAAGGGAAACTAGATGAG+TGG | + | chr4_2:19122371-19122390 | None:intergenic | 40.0% | |
| !! | CACTCATCTAGTTTCCCTTT+TGG | - | chr4_2:19122369-19122388 | Msa0593220:intron | 40.0% |
| GTGTGTAGTGGTCATGATAA+AGG | + | chr4_2:19122672-19122691 | None:intergenic | 40.0% | |
| ! | AAAAGAGCTTTAATAGGCGG+GGG | + | chr4_2:19122731-19122750 | None:intergenic | 40.0% |
| TAACATCAAATGGGGGTCAA+AGG | + | chr4_2:19123346-19123365 | None:intergenic | 40.0% | |
| GACCCCCATTTGATGTTATT+CGG | - | chr4_2:19123348-19123367 | Msa0593220:CDS | 40.0% | |
| CACCGAATAACATCAAATGG+GGG | + | chr4_2:19123353-19123372 | None:intergenic | 40.0% | |
| TTATCAATGGAAGGATCTCG+TGG | - | chr4_2:19123414-19123433 | Msa0593220:CDS | 40.0% | |
| TTTGGGAATGAGAAGGAAGA+TGG | - | chr4_2:19123457-19123476 | Msa0593220:intron | 40.0% | |
| TTGGGAATGAGAAGGAAGAT+GGG | - | chr4_2:19123458-19123477 | Msa0593220:intron | 40.0% | |
| ! | ATTGGCAAATGGTTTGTGCA+TGG | - | chr4_2:19123535-19123554 | Msa0593220:CDS | 40.0% |
| GTTTGGGAATGAGAATGAGA+TGG | - | chr4_2:19123561-19123580 | Msa0593220:exon | 40.0% | |
| TTGGGAATGAGAATGAGATG+GGG | - | chr4_2:19123563-19123582 | Msa0593220:exon | 40.0% | |
| GTGGCGAAAGATGTGTTAGA+AGG | - | chr4_2:19119926-19119945 | Msa0593220:intron | 45.0% | |
| TTTGTAGCTCGCCATTCACT+TGG | + | chr4_2:19120343-19120362 | None:intergenic | 45.0% | |
| AACACACCTCTGATTGGGTT+AGG | + | chr4_2:19120393-19120412 | None:intergenic | 45.0% | |
| GTCCCTTCTCCTAACTTGAT+GGG | + | chr4_2:19121045-19121064 | None:intergenic | 45.0% | |
| TGTCCCTTCTCCTAACTTGA+TGG | + | chr4_2:19121046-19121065 | None:intergenic | 45.0% | |
| TGTGAACACTTCAGTTCAGC+CGG | + | chr4_2:19121320-19121339 | None:intergenic | 45.0% | |
| AGCGCTTGGAGCAAATGATT+GGG | + | chr4_2:19121357-19121376 | None:intergenic | 45.0% | |
| ! | AAAACAGAAGATGGAGCGCT+TGG | + | chr4_2:19121371-19121390 | None:intergenic | 45.0% |
| GGAAAAAGTTGCTGCTATGG+AGG | + | chr4_2:19121452-19121471 | None:intergenic | 45.0% | |
| ! | AACAAGAAGGGGCGCATATT+TGG | + | chr4_2:19121550-19121569 | None:intergenic | 45.0% |
| TATCCGTATCTGGGCTTCAT+AGG | + | chr4_2:19121779-19121798 | None:intergenic | 45.0% | |
| CTTGTGTATCTGCGGAGTAT+CGG | - | chr4_2:19122164-19122183 | Msa0593220:intron | 45.0% | |
| TATCGGATACCGATACTCCA+CGG | + | chr4_2:19122267-19122286 | None:intergenic | 45.0% | |
| ATCGGTATCCGATACGTATC+CGG | - | chr4_2:19122273-19122292 | Msa0593220:intron | 45.0% | |
| TATCCGATACGTATCCGGTA+CGG | - | chr4_2:19122278-19122297 | Msa0593220:intron | 45.0% | |
| GAAGTCCGGATACTCCAAAA+CGG | + | chr4_2:19122312-19122331 | None:intergenic | 45.0% | |
| GTGGTCATGATAAAGGCGAA+TGG | + | chr4_2:19122665-19122684 | None:intergenic | 45.0% | |
| ACCACTACACACCTTGAAGA+AGG | - | chr4_2:19122680-19122699 | Msa0593220:intron | 45.0% | |
| ! | AAAGAGCTTTAATAGGCGGG+GGG | + | chr4_2:19122730-19122749 | None:intergenic | 45.0% |
| !! | AGGAAAATTTTGGTGGGGCA+TGG | + | chr4_2:19123138-19123157 | None:intergenic | 45.0% |
| GGGTCAAAGGATAGATCAGA+TGG | + | chr4_2:19123333-19123352 | None:intergenic | 45.0% | |
| AGGATCTCGTGGCATATCTA+TGG | - | chr4_2:19123425-19123444 | Msa0593220:CDS | 45.0% | |
| ! | GTTCCACTTTGGGAATGAGA+AGG | - | chr4_2:19123450-19123469 | Msa0593220:intron | 45.0% |
| CTTCCTTCTCATTCCCAAAG+TGG | + | chr4_2:19123456-19123475 | None:intergenic | 45.0% | |
| AATGAGAAGGAAGATGGGTG+TGG | - | chr4_2:19123463-19123482 | Msa0593220:intron | 45.0% | |
| ATGAGAAGGAAGATGGGTGT+GGG | - | chr4_2:19123464-19123483 | Msa0593220:intron | 45.0% | |
| ! | GTGGTTTGGGATTGAGAAGA+AGG | - | chr4_2:19123486-19123505 | Msa0593220:intron | 45.0% |
| !! | TGGTTTGTGCATGGCTTGTT+TGG | - | chr4_2:19123544-19123563 | Msa0593220:CDS | 45.0% |
| !! | GGTTTGTGCATGGCTTGTTT+GGG | - | chr4_2:19123545-19123564 | Msa0593220:CDS | 45.0% |
| CCATTATCACCCTCTCCTTC+CGG | - | chr4_2:19121298-19121317 | Msa0593220:intron | 50.0% | |
| AACACTTCAGTTCAGCCGGA+AGG | + | chr4_2:19121316-19121335 | None:intergenic | 50.0% | |
| GAGCGCTTGGAGCAAATGAT+TGG | + | chr4_2:19121358-19121377 | None:intergenic | 50.0% | |
| CAGCCTATGAAGCCCAGATA+CGG | - | chr4_2:19121773-19121792 | Msa0593220:intron | 50.0% | |
| TGAAGCCCAGATACGGATAC+CGG | - | chr4_2:19121780-19121799 | Msa0593220:intron | 50.0% | |
| GTATCGTATCGTACCCGTAC+CGG | + | chr4_2:19121802-19121821 | None:intergenic | 50.0% | |
| GGTACGGGTACGATACGATA+CGG | - | chr4_2:19121801-19121820 | Msa0593220:intron | 50.0% | |
| GTACGGGTACGATACGATAC+GGG | - | chr4_2:19121802-19121821 | Msa0593220:intron | 50.0% | |
| GGTACGATACGATACGGGTA+CGG | - | chr4_2:19121807-19121826 | Msa0593220:intron | 50.0% | |
| GTACGATACGATACGGGTAC+GGG | - | chr4_2:19121808-19121827 | Msa0593220:intron | 50.0% | |
| CGATACTCCGCAGATACACA+AGG | + | chr4_2:19122166-19122185 | None:intergenic | 50.0% | |
| ATCCGATACGTATCCGGTAC+GGG | - | chr4_2:19122279-19122298 | Msa0593220:intron | 50.0% | |
| TACCCGTACCGGATACGTAT+CGG | + | chr4_2:19122284-19122303 | None:intergenic | 50.0% | |
| !!! | CGTCTCCGTTTTGGAGTATC+CGG | - | chr4_2:19122304-19122323 | Msa0593220:intron | 50.0% |
| GCCTTCTTCAAGGTGTGTAG+TGG | + | chr4_2:19122684-19122703 | None:intergenic | 50.0% | |
| ! | AAGAGCTTTAATAGGCGGGG+GGG | + | chr4_2:19122729-19122748 | None:intergenic | 50.0% |
| AAGATGGGTGTGGGTGGTTT+GGG | - | chr4_2:19123473-19123492 | Msa0593220:intron | 50.0% | |
| CCGGAAGGAGAGGGTGATAA+TGG | + | chr4_2:19121301-19121320 | None:intergenic | 55.0% | |
| TCAGTTCAGCCGGAAGGAGA+GGG | + | chr4_2:19121310-19121329 | None:intergenic | 55.0% | |
| TTCAGTTCAGCCGGAAGGAG+AGG | + | chr4_2:19121311-19121330 | None:intergenic | 55.0% | |
| ! | CCGTACCGGTATCCGTATCT+GGG | + | chr4_2:19121788-19121807 | None:intergenic | 55.0% |
| CCCAGATACGGATACCGGTA+CGG | - | chr4_2:19121785-19121804 | Msa0593220:intron | 55.0% | |
| CCAGATACGGATACCGGTAC+GGG | - | chr4_2:19121786-19121805 | Msa0593220:intron | 55.0% | |
| CGATACTCCACGGATACTCG+CGG | + | chr4_2:19122257-19122276 | None:intergenic | 55.0% | |
| CGCGAGTATCCGTGGAGTAT+CGG | - | chr4_2:19122255-19122274 | Msa0593220:intron | 55.0% | |
| AAACGGAGACGTACCCGTAC+CGG | + | chr4_2:19122295-19122314 | None:intergenic | 55.0% | |
| ! | GTACGGGTACGTCTCCGTTT+TGG | - | chr4_2:19122295-19122314 | Msa0593220:intron | 55.0% |
| ! | AGAGCTTTAATAGGCGGGGG+GGG | + | chr4_2:19122728-19122747 | None:intergenic | 55.0% |
| GCACTTCTCACTGCCTCTTG+TGG | - | chr4_2:19123175-19123194 | Msa0593220:CDS | 55.0% | |
| AGAAGGAAGATGGGTGTGGG+TGG | - | chr4_2:19123467-19123486 | Msa0593220:intron | 55.0% | |
| GAAGATGGGTGTGGGTGGTT+TGG | - | chr4_2:19123472-19123491 | Msa0593220:intron | 55.0% | |
| ! | CCCGTACCGGTATCCGTATC+TGG | + | chr4_2:19121789-19121808 | None:intergenic | 60.0% |
| TGCGTATCCGCGAGTATCCG+TGG | - | chr4_2:19122247-19122266 | Msa0593220:intron | 60.0% | |
| ! | AGCTTTAATAGGCGGGGGGG+GGG | + | chr4_2:19122726-19122745 | None:intergenic | 60.0% |
| ! | GAGCTTTAATAGGCGGGGGG+GGG | + | chr4_2:19122727-19122746 | None:intergenic | 60.0% |
| TTGGTGGGGCATGGTCATGC+TGG | + | chr4_2:19123129-19123148 | None:intergenic | 60.0% | |
| GCTTTAATAGGCGGGGGGGG+GGG | + | chr4_2:19122725-19122744 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 19119780 | 19123591 | 19119780 | ID=Msa0593220;Name=Msa0593220 |
| chr4_2 | mRNA | 19119780 | 19123591 | 19119780 | ID=Msa0593220-mRNA-1;Parent=Msa0593220;Name=Msa0593220-mRNA-1;_AED=0.45;_eAED=0.51;_QI=14|0|0|0.75|0|0|4|0|229 |
| chr4_2 | exon | 19123512 | 19123591 | 19123512 | ID=Msa0593220-mRNA-1:exon:5539;Parent=Msa0593220-mRNA-1 |
| chr4_2 | exon | 19123246 | 19123463 | 19123246 | ID=Msa0593220-mRNA-1:exon:5538;Parent=Msa0593220-mRNA-1 |
| chr4_2 | exon | 19122966 | 19123203 | 19122966 | ID=Msa0593220-mRNA-1:exon:5537;Parent=Msa0593220-mRNA-1 |
| chr4_2 | exon | 19119780 | 19119944 | 19119780 | ID=Msa0593220-mRNA-1:exon:5536;Parent=Msa0593220-mRNA-1 |
| chr4_2 | five_prime_UTR | 19123578 | 19123591 | 19123578 | ID=Msa0593220-mRNA-1:five_prime_utr;Parent=Msa0593220-mRNA-1 |
| chr4_2 | CDS | 19123512 | 19123577 | 19123512 | ID=Msa0593220-mRNA-1:cds;Parent=Msa0593220-mRNA-1 |
| chr4_2 | CDS | 19123246 | 19123463 | 19123246 | ID=Msa0593220-mRNA-1:cds;Parent=Msa0593220-mRNA-1 |
| chr4_2 | CDS | 19122966 | 19123203 | 19122966 | ID=Msa0593220-mRNA-1:cds;Parent=Msa0593220-mRNA-1 |
| chr4_2 | CDS | 19119780 | 19119944 | 19119780 | ID=Msa0593220-mRNA-1:cds;Parent=Msa0593220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
