Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593370 | BAA76425.1 | 80.000 | 55 | 11 | 0 | 1 | 55 | 68 | 122 | 2.27e-18 | 84.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593370 | sp|Q8H1F0|BZP29_ARATH | 74.545 | 55 | 14 | 0 | 1 | 55 | 382 | 436 | 8.42e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0593370 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593370 | MtrunA17_Chr4g0036071 | 80.000 | 55 | 11 | 0 | 1 | 55 | 348 | 402 | 6.77e-21 | 84.3 |
| Msa0593370 | MtrunA17_Chr2g0306581 | 79.167 | 48 | 10 | 0 | 1 | 48 | 1 | 48 | 3.23e-18 | 72.8 |
| Msa0593370 | MtrunA17_Chr2g0329551 | 67.273 | 55 | 18 | 0 | 1 | 55 | 209 | 263 | 2.11e-15 | 68.9 |
| Msa0593370 | MtrunA17_Chr5g0432701 | 67.273 | 55 | 18 | 0 | 1 | 55 | 147 | 201 | 8.42e-15 | 67.0 |
| Msa0593370 | MtrunA17_Chr6g0463571 | 70.588 | 51 | 15 | 0 | 1 | 51 | 139 | 189 | 8.46e-15 | 67.0 |
| Msa0593370 | MtrunA17_Chr3g0107491 | 67.273 | 55 | 18 | 0 | 1 | 55 | 165 | 219 | 1.64e-14 | 66.2 |
| Msa0593370 | MtrunA17_Chr1g0156051 | 73.333 | 45 | 12 | 0 | 1 | 45 | 375 | 419 | 1.99e-13 | 63.2 |
| Msa0593370 | MtrunA17_Chr3g0128781 | 58.182 | 55 | 23 | 0 | 1 | 55 | 96 | 150 | 7.14e-13 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593370 | AT4G38900.2 | 74.545 | 55 | 14 | 0 | 1 | 55 | 382 | 436 | 8.56e-20 | 81.6 |
| Msa0593370 | AT4G38900.3 | 74.545 | 55 | 14 | 0 | 1 | 55 | 382 | 436 | 8.56e-20 | 81.6 |
| Msa0593370 | AT4G38900.1 | 67.213 | 61 | 14 | 1 | 1 | 55 | 382 | 442 | 1.81e-17 | 75.1 |
| Msa0593370 | AT2G21230.3 | 72.222 | 54 | 15 | 0 | 2 | 55 | 359 | 412 | 6.86e-17 | 73.6 |
| Msa0593370 | AT2G21230.4 | 72.222 | 54 | 15 | 0 | 2 | 55 | 359 | 412 | 6.99e-17 | 73.6 |
| Msa0593370 | AT2G21230.1 | 72.222 | 54 | 15 | 0 | 2 | 55 | 359 | 412 | 6.99e-17 | 73.6 |
| Msa0593370 | AT2G21230.2 | 72.222 | 54 | 15 | 0 | 2 | 55 | 359 | 412 | 2.34e-16 | 72.0 |
| Msa0593370 | AT2G40620.1 | 69.091 | 55 | 17 | 0 | 1 | 55 | 136 | 190 | 6.55e-16 | 70.5 |
| Msa0593370 | AT2G31370.2 | 65.455 | 55 | 19 | 0 | 1 | 55 | 189 | 243 | 1.77e-14 | 66.6 |
| Msa0593370 | AT2G31370.4 | 65.455 | 55 | 19 | 0 | 1 | 55 | 189 | 243 | 1.77e-14 | 66.6 |
| Msa0593370 | AT2G31370.1 | 65.455 | 55 | 19 | 0 | 1 | 55 | 189 | 243 | 1.77e-14 | 66.6 |
| Msa0593370 | AT2G31370.7 | 65.455 | 55 | 19 | 0 | 1 | 55 | 189 | 243 | 1.77e-14 | 66.6 |
| Msa0593370 | AT2G31370.3 | 65.455 | 55 | 19 | 0 | 1 | 55 | 189 | 243 | 1.77e-14 | 66.6 |
| Msa0593370 | AT2G31370.6 | 65.455 | 55 | 19 | 0 | 1 | 55 | 189 | 243 | 1.77e-14 | 66.6 |
| Msa0593370 | AT2G31370.5 | 65.455 | 55 | 19 | 0 | 1 | 55 | 189 | 243 | 1.78e-14 | 66.6 |
| Msa0593370 | AT1G06070.1 | 68.627 | 51 | 16 | 0 | 5 | 55 | 202 | 252 | 2.39e-14 | 66.2 |
| Msa0593370 | AT1G06850.2 | 65.455 | 55 | 19 | 0 | 1 | 55 | 136 | 190 | 4.25e-14 | 64.7 |
| Msa0593370 | AT1G43700.1 | 61.818 | 55 | 21 | 0 | 1 | 55 | 182 | 236 | 1.10e-13 | 64.3 |
| Msa0593370 | AT1G06850.1 | 65.455 | 55 | 19 | 0 | 1 | 55 | 136 | 190 | 1.16e-13 | 64.3 |
Find 85 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGGTTATTTCAGGATTT+TGG | 0.101232 | 4_2:-19506712 | Msa0593370:intron |
| GGACCTTACAATACTGTATT+TGG | 0.158563 | 4_2:-19505651 | Msa0593370:three_prime_UTR |
| GCTTAAGATGCGAAATATTT+TGG | 0.179703 | 4_2:-19506658 | Msa0593370:CDS |
| ATTTGGAAAATAAATTTATA+AGG | 0.205498 | 4_2:-19505634 | Msa0593370:three_prime_UTR |
| AATAAATTTATAAGGGGAAT+TGG | 0.239221 | 4_2:-19505626 | Msa0593370:three_prime_UTR |
| TGCTACCAACACTGCTTTCT+CGG | 0.291207 | 4_2:+19506517 | None:intergenic |
| GCAGTTGGGAAGATGTTTAT+TGG | 0.300650 | 4_2:+19508579 | None:intergenic |
| GGAAGATGTTTATTGGTAAC+AGG | 0.305476 | 4_2:+19508586 | None:intergenic |
| TTTGGAAAATAAATTTATAA+GGG | 0.316986 | 4_2:-19505633 | Msa0593370:three_prime_UTR |
| AGGTTTGGCAACTTTGAGTA+TGG | 0.321602 | 4_2:-19505970 | Msa0593370:three_prime_UTR |
| GTGATTCACCGAATCGAGTT+AGG | 0.324969 | 4_2:+19508343 | None:intergenic |
| TTCGGAGTTGAAGAAAATTA+TGG | 0.328298 | 4_2:-19506860 | Msa0593370:exon |
| AAATTGTTAAAGAGCTTTGT+AGG | 0.344037 | 4_2:-19505672 | Msa0593370:three_prime_UTR |
| AAAATAATACTTGGCCTTTG+TGG | 0.354538 | 4_2:+19506306 | None:intergenic |
| AACACTGCTTTCTCGGTTCT+AGG | 0.357024 | 4_2:+19506524 | None:intergenic |
| GGACTGTAATCTTGAACTTC+AGG | 0.367870 | 4_2:+19506345 | None:intergenic |
| GCAACGGCACAACGAATTCT+TGG | 0.368486 | 4_2:+19506405 | None:intergenic |
| GAGGTGTCATATTCTGAAAT+TGG | 0.368658 | 4_2:+19506586 | None:intergenic |
| ATAAATTTATAAGGGGAATT+GGG | 0.372298 | 4_2:-19505625 | Msa0593370:three_prime_UTR |
| ATTGAAGATCTTGTTGTGTT+TGG | 0.378750 | 4_2:+19505833 | None:intergenic |
| GTGAATCACCTACCTCGATT+TGG | 0.392528 | 4_2:-19508329 | Msa0593370:five_prime_UTR |
| ATCTAATAATAATAATCAAC+TGG | 0.395377 | 4_2:+19505736 | None:intergenic |
| TTCATCGTGGTTTGTCTCAC+CGG | 0.399368 | 4_2:-19508286 | Msa0593370:five_prime_UTR |
| GTTCTGAAATGCCTTCAGTT+TGG | 0.402919 | 4_2:-19505534 | Msa0593370:three_prime_UTR |
| TTTCCAAATACAGTATTGTA+AGG | 0.414848 | 4_2:+19505648 | None:intergenic |
| ATTTCGCATCTTAAGCTCAA+TGG | 0.420852 | 4_2:+19506665 | None:intergenic |
| GTTAACTTTCGCCACCGTAC+GGG | 0.448129 | 4_2:-19505941 | Msa0593370:three_prime_UTR |
| CAGCACCTCTTAGCCCGCTT+CGG | 0.449837 | 4_2:+19506802 | None:intergenic |
| CAGTTCCTTTGTGAATGGTA+GGG | 0.452124 | 4_2:-19505861 | Msa0593370:three_prime_UTR |
| CTCAAAACCCTAACTCGATT+CGG | 0.452533 | 4_2:-19508351 | Msa0593370:five_prime_UTR |
| CTATTCAGTTCCTTTGTGAA+TGG | 0.454434 | 4_2:-19505866 | Msa0593370:three_prime_UTR |
| TTGTGGAACCAAGCTCCATA+TGG | 0.454668 | 4_2:+19506323 | None:intergenic |
| TGTTAACTTTCGCCACCGTA+CGG | 0.456246 | 4_2:-19505942 | Msa0593370:three_prime_UTR |
| AATAGATGCAGTGCTCTAGA+AGG | 0.460695 | 4_2:+19505884 | None:intergenic |
| ACAGCGAGTTTACCTTTGAC+AGG | 0.463284 | 4_2:+19508241 | None:intergenic |
| TCAGTTCCTTTGTGAATGGT+AGG | 0.467621 | 4_2:-19505862 | Msa0593370:three_prime_UTR |
| TTCAAGATTACAGTCCCATA+TGG | 0.472759 | 4_2:-19506338 | Msa0593370:three_prime_UTR |
| TGATTCACCGAATCGAGTTA+GGG | 0.473094 | 4_2:+19508344 | None:intergenic |
| AGAAGGTTGTGCATAGGGTT+AGG | 0.473560 | 4_2:+19505901 | None:intergenic |
| GAATTCGTTGTGCCGTTGCT+AGG | 0.480369 | 4_2:-19506401 | Msa0593370:three_prime_UTR |
| TTAGACTGAGAAGAATGCTT+CGG | 0.481879 | 4_2:-19506878 | Msa0593370:intron |
| AGTTCCTTTGTGAATGGTAG+GGG | 0.485636 | 4_2:-19505860 | Msa0593370:three_prime_UTR |
| CTATGTGTAGGATGGAGGTT+TGG | 0.488964 | 4_2:-19505985 | Msa0593370:intron |
| GGAGGACGAAGATGCGAAAC+CGG | 0.489146 | 4_2:+19508267 | None:intergenic |
| GCTCTAGAAGGTTGTGCATA+GGG | 0.490885 | 4_2:+19505896 | None:intergenic |
| AAATTGTGTAAAGAACAATA+TGG | 0.499131 | 4_2:+19505557 | None:intergenic |
| TTCCACATGTTATATACAGT+TGG | 0.506432 | 4_2:+19505776 | None:intergenic |
| ATCAGAGTCTCAATGCAGTT+GGG | 0.512214 | 4_2:+19508565 | None:intergenic |
| AATCAGAGTCTCAATGCAGT+TGG | 0.516569 | 4_2:+19508564 | None:intergenic |
| ACAACAAGATCTTCAATTGA+AGG | 0.518676 | 4_2:-19505827 | Msa0593370:three_prime_UTR |
| ATTACTTGTGAGGAGGAAAA+CGG | 0.521102 | 4_2:+19508481 | None:intergenic |
| TTACAGTCCCATATGGAGCT+TGG | 0.523649 | 4_2:-19506331 | Msa0593370:three_prime_UTR |
| CTGATCCGAAGCGGGCTAAG+AGG | 0.529672 | 4_2:-19506807 | Msa0593370:intron |
| TGTGGAACCAAGCTCCATAT+GGG | 0.530718 | 4_2:+19506324 | None:intergenic |
| TGCTCTAGAAGGTTGTGCAT+AGG | 0.531169 | 4_2:+19505895 | None:intergenic |
| GAAAGTTGCTGAGAATGTTA+TGG | 0.535622 | 4_2:-19506830 | Msa0593370:CDS |
| GTTCAGACTCTGAAGACTGA+AGG | 0.542615 | 4_2:-19506621 | Msa0593370:CDS |
| TCGTCCTCCGTCCCTGTCAA+AGG | 0.545355 | 4_2:-19508253 | Msa0593370:intron |
| TTGGAAAATAAATTTATAAG+GGG | 0.545493 | 4_2:-19505632 | Msa0593370:three_prime_UTR |
| TGTTATGGCTGATCCGAAGC+GGG | 0.561676 | 4_2:-19506815 | Msa0593370:CDS |
| CATATCTATGTGTAGGATGG+AGG | 0.564335 | 4_2:-19505990 | Msa0593370:intron |
| CATGTGAGCTGCTCCCCGTA+CGG | 0.564411 | 4_2:+19505927 | None:intergenic |
| TAGAACCGAGAAAGCAGTGT+TGG | 0.572911 | 4_2:-19506522 | Msa0593370:intron |
| TTCAGACTCTGAAGACTGAA+GGG | 0.583079 | 4_2:-19506620 | Msa0593370:CDS |
| TTAACTTTCGCCACCGTACG+GGG | 0.586054 | 4_2:-19505940 | Msa0593370:three_prime_UTR |
| CAGCGAGTTTACCTTTGACA+GGG | 0.588627 | 4_2:+19508242 | None:intergenic |
| TGAAGCAAACTCAGCAAGAG+AGG | 0.599458 | 4_2:+19506567 | None:intergenic |
| TGCCAACTGTATATAACATG+TGG | 0.599624 | 4_2:-19505778 | Msa0593370:three_prime_UTR |
| CGTACGGGGAGCAGCTCACA+TGG | 0.603251 | 4_2:-19505926 | Msa0593370:three_prime_UTR |
| CGAAAACTGAGCCAAACTGA+AGG | 0.605296 | 4_2:+19505523 | None:intergenic |
| GAGTTTACCTTTGACAGGGA+CGG | 0.609469 | 4_2:+19508246 | None:intergenic |
| CGCCGAGATTACTTGTGAGG+AGG | 0.609953 | 4_2:+19508474 | None:intergenic |
| TTTACCTTTGACAGGGACGG+AGG | 0.619960 | 4_2:+19508249 | None:intergenic |
| GTGAGCTGCTCCCCGTACGG+TGG | 0.624321 | 4_2:+19505930 | None:intergenic |
| GTGAGACAAACCACGATGAA+CGG | 0.631636 | 4_2:+19508289 | None:intergenic |
| AGAGCAAACCAAATCGAGGT+AGG | 0.636517 | 4_2:+19508321 | None:intergenic |
| TGGCGCCGAGATTACTTGTG+AGG | 0.638646 | 4_2:+19508471 | None:intergenic |
| AACTGCATTGGTAACATACA+CGG | 0.654345 | 4_2:-19508611 | None:intergenic |
| ATGTTATGGCTGATCCGAAG+CGG | 0.656660 | 4_2:-19506816 | Msa0593370:CDS |
| AATCAGAGCAAACCAAATCG+AGG | 0.676287 | 4_2:+19508317 | None:intergenic |
| TATGGAGCTTGGTTCCACAA+AGG | 0.680414 | 4_2:-19506320 | Msa0593370:three_prime_UTR |
| TGATTGATCACCGTTCATCG+TGG | 0.686182 | 4_2:-19508299 | Msa0593370:five_prime_UTR |
| CAATCCCCTACCATTCACAA+AGG | 0.690949 | 4_2:+19505856 | None:intergenic |
| AGTGCTCGAGAACCTAGCAA+CGG | 0.707214 | 4_2:+19506389 | None:intergenic |
| ACTTGTGAGGAGGAAAACGG+CGG | 0.765119 | 4_2:+19508484 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAATAAAAAAAATGAAT+GGG | + | chr4_2:19505529-19505548 | None:intergenic | 10.0% |
| !! | AATTCAATAAAAAAAATGAA+TGG | + | chr4_2:19505530-19505549 | None:intergenic | 10.0% |
| !!! | AAAAAAATCTACTTTTTTTT+TGG | + | chr4_2:19506660-19506679 | None:intergenic | 10.0% |
| !! | TGTTAAAAAAAAATAATACT+TGG | + | chr4_2:19507772-19507791 | None:intergenic | 10.0% |
| !! | ATTTGGAAAATAAATTTATA+AGG | - | chr4_2:19508432-19508451 | Msa0593370:intron | 10.0% |
| !! | TTTGGAAAATAAATTTATAA+GGG | - | chr4_2:19508433-19508452 | Msa0593370:intron | 10.0% |
| !! | ATCATAAAAAATAAAAAGAA+TGG | + | chr4_2:19508480-19508499 | None:intergenic | 10.0% |
| !! | AAAAAAGACTACAAATTAAT+AGG | + | chr4_2:19506462-19506481 | None:intergenic | 15.0% |
| !! | AATAAAAAATCTCAAGAAAA+AGG | + | chr4_2:19506530-19506549 | None:intergenic | 15.0% |
| !!! | TTTTCTTGAGATTTTTTATT+TGG | - | chr4_2:19506530-19506549 | Msa0593370:exon | 15.0% |
| !! | TACCATTATAAATGATAATT+TGG | - | chr4_2:19506698-19506717 | Msa0593370:CDS | 15.0% |
| !! | TTCCAAATTATCATTTATAA+TGG | + | chr4_2:19506703-19506722 | None:intergenic | 15.0% |
| !! | ATTATAAATGATAATTTGGA+AGG | - | chr4_2:19506702-19506721 | Msa0593370:intron | 15.0% |
| !!! | AATTATGTTTTGACTAAATT+AGG | - | chr4_2:19506779-19506798 | Msa0593370:intron | 15.0% |
| !!! | TCTTTGTTTTTAAATTGAAT+GGG | - | chr4_2:19506846-19506865 | Msa0593370:exon | 15.0% |
| !! | AAAAACATTTAAACTTCATA+AGG | + | chr4_2:19506902-19506921 | None:intergenic | 15.0% |
| !!! | ATTTAACTTGGATATTTTTT+TGG | - | chr4_2:19507336-19507355 | Msa0593370:intron | 15.0% |
| !!! | TTTAACTTGGATATTTTTTT+GGG | - | chr4_2:19507337-19507356 | Msa0593370:intron | 15.0% |
| !! | ATCTAATAATAATAATCAAC+TGG | + | chr4_2:19508333-19508352 | None:intergenic | 15.0% |
| !! | TTGGAAAATAAATTTATAAG+GGG | - | chr4_2:19508434-19508453 | Msa0593370:intron | 15.0% |
| !!! | ATAACTAATTTTCATTTTGC+TGG | - | chr4_2:19506125-19506144 | Msa0593370:intron | 20.0% |
| !!! | CATCATTAGTTTTATGATTT+TGG | - | chr4_2:19506209-19506228 | Msa0593370:intron | 20.0% |
| !!! | GTCTTTGTTTTTAAATTGAA+TGG | - | chr4_2:19506845-19506864 | Msa0593370:exon | 20.0% |
| !!! | TTGTGATTTATGTGTATTTT+AGG | - | chr4_2:19506920-19506939 | Msa0593370:intron | 20.0% |
| !!! | TTTATGTGTATTTTAGGATA+AGG | - | chr4_2:19506926-19506945 | Msa0593370:intron | 20.0% |
| !! | TTTAGTTAGTAATGTCAATA+TGG | - | chr4_2:19507306-19507325 | Msa0593370:intron | 20.0% |
| !!! | ATATTTTTTTGGGTTATTTC+AGG | - | chr4_2:19507347-19507366 | Msa0593370:intron | 20.0% |
| !! | AGAAATGATCAATAAAGATT+TGG | + | chr4_2:19507581-19507600 | None:intergenic | 20.0% |
| !! | ATTGAAGGATGAAAAAAAAA+TGG | - | chr4_2:19508254-19508273 | Msa0593370:five_prime_UTR | 20.0% |
| !! | TTGAAGGATGAAAAAAAAAT+GGG | - | chr4_2:19508255-19508274 | Msa0593370:five_prime_UTR | 20.0% |
| !! | AATAAATTTATAAGGGGAAT+TGG | - | chr4_2:19508440-19508459 | Msa0593370:intron | 20.0% |
| !! | ATAAATTTATAAGGGGAATT+GGG | - | chr4_2:19508441-19508460 | Msa0593370:intron | 20.0% |
| !! | AAATTGTGTAAAGAACAATA+TGG | + | chr4_2:19508512-19508531 | None:intergenic | 20.0% |
| !! | TTTACATTTTCTAACATGCT+AGG | + | chr4_2:19506303-19506322 | None:intergenic | 25.0% |
| ! | AAATGTAATCACAGTTATGT+TGG | - | chr4_2:19506320-19506339 | Msa0593370:three_prime_UTR | 25.0% |
| !!! | TTTTTCGAAACATAACAGAT+GGG | - | chr4_2:19506400-19506419 | Msa0593370:three_prime_UTR | 25.0% |
| ! | CTAAATTACAATCTGTCATT+TGG | - | chr4_2:19506495-19506514 | Msa0593370:intron | 25.0% |
| !!! | GGTATTGTTCTTTTTAACTA+TGG | - | chr4_2:19506551-19506570 | Msa0593370:CDS | 25.0% |
| !!! | AATCTACTTTTTTTTTGGCT+AGG | + | chr4_2:19506655-19506674 | None:intergenic | 25.0% |
| ! | ATATGTATCTTGACTCTATT+TGG | - | chr4_2:19506823-19506842 | Msa0593370:CDS | 25.0% |
| !!! | TTTACTGCTCTTATTTTACT+TGG | - | chr4_2:19507059-19507078 | Msa0593370:intron | 25.0% |
| ! | TATGGATGGTTAATTTAACT+TGG | - | chr4_2:19507324-19507343 | Msa0593370:intron | 25.0% |
| !!! | ATTTTTCGAAATGCAGAAAA+TGG | + | chr4_2:19507801-19507820 | None:intergenic | 25.0% |
| ! | AAGTTCAGTATTCTATAGTA+TGG | - | chr4_2:19507821-19507840 | Msa0593370:intron | 25.0% |
| !! | AAATTGTTAAAGAGCTTTGT+AGG | - | chr4_2:19508394-19508413 | Msa0593370:intron | 25.0% |
| ! | TTTCCAAATACAGTATTGTA+AGG | + | chr4_2:19508421-19508440 | None:intergenic | 25.0% |
| !!! | ATTTTAAGAATGCTGTTGAT+TGG | + | chr4_2:19508576-19508595 | None:intergenic | 25.0% |
| ! | GCTTTTCATGTTGAAAAGAA+TGG | - | chr4_2:19505879-19505898 | Msa0593370:three_prime_UTR | 30.0% |
| !!! | TCCTCTTAGTTTTGTTATGA+TGG | - | chr4_2:19506078-19506097 | Msa0593370:intron | 30.0% |
| ACCATCATAACAAAACTAAG+AGG | + | chr4_2:19506082-19506101 | None:intergenic | 30.0% | |
| !!! | CTTTTTCGAAACATAACAGA+TGG | - | chr4_2:19506399-19506418 | Msa0593370:three_prime_UTR | 30.0% |
| TTGTAATTTAGATGTGGCAT+GGG | + | chr4_2:19506486-19506505 | None:intergenic | 30.0% | |
| ATTGTAATTTAGATGTGGCA+TGG | + | chr4_2:19506487-19506506 | None:intergenic | 30.0% | |
| GACAGATTGTAATTTAGATG+TGG | + | chr4_2:19506492-19506511 | None:intergenic | 30.0% | |
| !!! | GCATTTTTTTGACTTCATGT+TGG | - | chr4_2:19506585-19506604 | Msa0593370:CDS | 30.0% |
| ACAATGTGTGCTTACAATAT+GGG | - | chr4_2:19506996-19507015 | Msa0593370:intron | 30.0% | |
| CATCAAAATCAGTTCAAATC+AGG | + | chr4_2:19507102-19507121 | None:intergenic | 30.0% | |
| !! | TTGAACTGATTTTGATGTCT+TGG | - | chr4_2:19507105-19507124 | Msa0593370:intron | 30.0% |
| TTCGGAGTTGAAGAAAATTA+TGG | - | chr4_2:19507206-19507225 | Msa0593370:intron | 30.0% | |
| GTTAGTAATGTCAATATGGA+TGG | - | chr4_2:19507310-19507329 | Msa0593370:intron | 30.0% | |
| !! | TTTGGGTTATTTCAGGATTT+TGG | - | chr4_2:19507354-19507373 | Msa0593370:intron | 30.0% |
| ! | GCTTAAGATGCGAAATATTT+TGG | - | chr4_2:19507408-19507427 | Msa0593370:intron | 30.0% |
| ! | ATTAGCTTCTTAGTAATCAG+AGG | + | chr4_2:19507612-19507631 | None:intergenic | 30.0% |
| GTGTTAAATTATTGTGACAG+CGG | - | chr4_2:19507635-19507654 | Msa0593370:intron | 30.0% | |
| ! | AAAATAATACTTGGCCTTTG+TGG | + | chr4_2:19507763-19507782 | None:intergenic | 30.0% |
| TTGTCACTGTTGTCAAATAA+AGG | - | chr4_2:19507888-19507907 | Msa0593370:intron | 30.0% | |
| TTGTCAAATAAAGGCTATAG+TGG | - | chr4_2:19507897-19507916 | Msa0593370:intron | 30.0% | |
| ! | ATTGAAGATCTTGTTGTGTT+TGG | + | chr4_2:19508236-19508255 | None:intergenic | 30.0% |
| ACAACAAGATCTTCAATTGA+AGG | - | chr4_2:19508239-19508258 | Msa0593370:intron | 30.0% | |
| TTCCACATGTTATATACAGT+TGG | + | chr4_2:19508293-19508312 | None:intergenic | 30.0% | |
| ! | GGAAGATGTTTATTGGTAAC+AGG | + | chr4_2:19505483-19505502 | None:intergenic | 35.0% |
| ATTACTTGTGAGGAGGAAAA+CGG | + | chr4_2:19505588-19505607 | None:intergenic | 35.0% | |
| !!! | CCTTCAATTTTAGCTCCATT+CGG | - | chr4_2:19505686-19505705 | Msa0593370:three_prime_UTR | 35.0% |
| AAGGTGAAAGAAAGAAAGCA+AGG | + | chr4_2:19505858-19505877 | None:intergenic | 35.0% | |
| TTGCTTTCTTTCTTTCACCT+TGG | - | chr4_2:19505857-19505876 | Msa0593370:three_prime_UTR | 35.0% | |
| ! | CTTTTCAACATGAAAAGCCA+AGG | + | chr4_2:19505877-19505896 | None:intergenic | 35.0% |
| !!! | GGTTGAGTTGAACTGATTTT+TGG | - | chr4_2:19505900-19505919 | Msa0593370:three_prime_UTR | 35.0% |
| CGACAGTACACACAAAAATT+AGG | + | chr4_2:19505966-19505985 | None:intergenic | 35.0% | |
| TGTAATTTAGATGTGGCATG+GGG | + | chr4_2:19506485-19506504 | None:intergenic | 35.0% | |
| CTAAATTAGGAGCTAATGCT+TGG | - | chr4_2:19506792-19506811 | Msa0593370:intron | 35.0% | |
| !! | GGGAAGTACTTTGAGATATT+TGG | - | chr4_2:19506866-19506885 | Msa0593370:five_prime_UTR | 35.0% |
| TAAGGCTTCATTCATTGCTA+AGG | - | chr4_2:19506944-19506963 | Msa0593370:intron | 35.0% | |
| GACAATGTGTGCTTACAATA+TGG | - | chr4_2:19506995-19507014 | Msa0593370:intron | 35.0% | |
| TTAGACTGAGAAGAATGCTT+CGG | - | chr4_2:19507188-19507207 | Msa0593370:intron | 35.0% | |
| GAAAGTTGCTGAGAATGTTA+TGG | - | chr4_2:19507236-19507255 | Msa0593370:intron | 35.0% | |
| !!! | ATTTCAGGATTTTGGCTAAC+AGG | - | chr4_2:19507362-19507381 | Msa0593370:intron | 35.0% |
| ATTTCGCATCTTAAGCTCAA+TGG | + | chr4_2:19507404-19507423 | None:intergenic | 35.0% | |
| !!! | TATTTTGGAGCTAGAACACA+AGG | - | chr4_2:19507423-19507442 | Msa0593370:intron | 35.0% |
| !! | GAGGTGTCATATTCTGAAAT+TGG | + | chr4_2:19507483-19507502 | None:intergenic | 35.0% |
| TTCAAGATTACAGTCCCATA+TGG | - | chr4_2:19507728-19507747 | Msa0593370:intron | 35.0% | |
| TGCATTGCATATCTATGTGT+AGG | - | chr4_2:19508069-19508088 | Msa0593370:intron | 35.0% | |
| TTGCATATCTATGTGTAGGA+TGG | - | chr4_2:19508073-19508092 | Msa0593370:intron | 35.0% | |
| CTATTCAGTTCCTTTGTGAA+TGG | - | chr4_2:19508200-19508219 | Msa0593370:intron | 35.0% | |
| TGCCAACTGTATATAACATG+TGG | - | chr4_2:19508288-19508307 | Msa0593370:five_prime_UTR | 35.0% | |
| GGACCTTACAATACTGTATT+TGG | - | chr4_2:19508415-19508434 | Msa0593370:intron | 35.0% | |
| GCAGTTGGGAAGATGTTTAT+TGG | + | chr4_2:19505490-19505509 | None:intergenic | 40.0% | |
| ATCAGAGTCTCAATGCAGTT+GGG | + | chr4_2:19505504-19505523 | None:intergenic | 40.0% | |
| AATCAGAGTCTCAATGCAGT+TGG | + | chr4_2:19505505-19505524 | None:intergenic | 40.0% | |
| TTCCTCCTCACAAGTAATCT+CGG | - | chr4_2:19505590-19505609 | Msa0593370:three_prime_UTR | 40.0% | |
| CCGAATGGAGCTAAAATTGA+AGG | + | chr4_2:19505689-19505708 | None:intergenic | 40.0% | |
| !!! | GGTTTTGAGAGAAAACCGAA+TGG | + | chr4_2:19505704-19505723 | None:intergenic | 40.0% |
| CTCAAAACCCTAACTCGATT+CGG | - | chr4_2:19505715-19505734 | Msa0593370:three_prime_UTR | 40.0% | |
| TGATTCACCGAATCGAGTTA+GGG | + | chr4_2:19505725-19505744 | None:intergenic | 40.0% | |
| AATCAGAGCAAACCAAATCG+AGG | + | chr4_2:19505752-19505771 | None:intergenic | 40.0% | |
| TGTCGCAACATGTCTTTCTT+AGG | - | chr4_2:19505981-19506000 | Msa0593370:intron | 40.0% | |
| ! | ACCTTGTTATGCTTGTGTAG+GGG | + | chr4_2:19506041-19506060 | None:intergenic | 40.0% |
| ! | CACCTTGTTATGCTTGTGTA+GGG | + | chr4_2:19506042-19506061 | None:intergenic | 40.0% |
| CTACACAAGCATAACAAGGT+GGG | - | chr4_2:19506041-19506060 | Msa0593370:intron | 40.0% | |
| GCTTAACTAATTGTGCAGGT+TGG | + | chr4_2:19506279-19506298 | None:intergenic | 40.0% | |
| AGGAGCTTAACTAATTGTGC+AGG | + | chr4_2:19506283-19506302 | None:intergenic | 40.0% | |
| ATGTCTAAGCTGTAACTCCT+TGG | - | chr4_2:19506619-19506638 | Msa0593370:CDS | 40.0% | |
| CTTCATTCATTGCTAAGGCT+GGG | - | chr4_2:19506949-19506968 | Msa0593370:intron | 40.0% | |
| !!! | GATTTTGGCTAACAGGCAAT+CGG | - | chr4_2:19507369-19507388 | Msa0593370:intron | 40.0% |
| ! | TTCAGACTCTGAAGACTGAA+GGG | - | chr4_2:19507446-19507465 | Msa0593370:intron | 40.0% |
| GGACTGTAATCTTGAACTTC+AGG | + | chr4_2:19507724-19507743 | None:intergenic | 40.0% | |
| ! | GACAAAAACCACTGCTGATT+TGG | + | chr4_2:19507873-19507892 | None:intergenic | 40.0% |
| CCACGAATCGCAGAAAATAA+TGG | + | chr4_2:19508011-19508030 | None:intergenic | 40.0% | |
| ! | CCATTATTTTCTGCGATTCG+TGG | - | chr4_2:19508008-19508027 | Msa0593370:intron | 40.0% |
| CATATCTATGTGTAGGATGG+AGG | - | chr4_2:19508076-19508095 | Msa0593370:intron | 40.0% | |
| AGGTTTGGCAACTTTGAGTA+TGG | - | chr4_2:19508096-19508115 | Msa0593370:intron | 40.0% | |
| ! | AATAGATGCAGTGCTCTAGA+AGG | + | chr4_2:19508185-19508204 | None:intergenic | 40.0% |
| TCAGTTCCTTTGTGAATGGT+AGG | - | chr4_2:19508204-19508223 | Msa0593370:intron | 40.0% | |
| CAGTTCCTTTGTGAATGGTA+GGG | - | chr4_2:19508205-19508224 | Msa0593370:intron | 40.0% | |
| AGTTCCTTTGTGAATGGTAG+GGG | - | chr4_2:19508206-19508225 | Msa0593370:intron | 40.0% | |
| !! | GTTCTGAAATGCCTTCAGTT+TGG | - | chr4_2:19508532-19508551 | Msa0593370:five_prime_UTR | 40.0% |
| GAAGAAGGAGGTGATGCTAT+CGG | + | chr4_2:19505628-19505647 | None:intergenic | 45.0% | |
| ATAGCATCACCTCCTTCTTC+CGG | - | chr4_2:19505628-19505647 | Msa0593370:three_prime_UTR | 45.0% | |
| GTGATTCACCGAATCGAGTT+AGG | + | chr4_2:19505726-19505745 | None:intergenic | 45.0% | |
| GTGAATCACCTACCTCGATT+TGG | - | chr4_2:19505737-19505756 | Msa0593370:three_prime_UTR | 45.0% | |
| AGAGCAAACCAAATCGAGGT+AGG | + | chr4_2:19505748-19505767 | None:intergenic | 45.0% | |
| TGATTGATCACCGTTCATCG+TGG | - | chr4_2:19505767-19505786 | Msa0593370:three_prime_UTR | 45.0% | |
| GTGAGACAAACCACGATGAA+CGG | + | chr4_2:19505780-19505799 | None:intergenic | 45.0% | |
| ! | TTCATCGTGGTTTGTCTCAC+CGG | - | chr4_2:19505780-19505799 | Msa0593370:three_prime_UTR | 45.0% |
| GAGTTTACCTTTGACAGGGA+CGG | + | chr4_2:19505823-19505842 | None:intergenic | 45.0% | |
| CAGCGAGTTTACCTTTGACA+GGG | + | chr4_2:19505827-19505846 | None:intergenic | 45.0% | |
| ACAGCGAGTTTACCTTTGAC+AGG | + | chr4_2:19505828-19505847 | None:intergenic | 45.0% | |
| TCTTAGGCTGCTGAGAATGA+TGG | - | chr4_2:19505997-19506016 | Msa0593370:intron | 45.0% | |
| ! | CCACCTTGTTATGCTTGTGT+AGG | + | chr4_2:19506043-19506062 | None:intergenic | 45.0% |
| CCTACACAAGCATAACAAGG+TGG | - | chr4_2:19506040-19506059 | Msa0593370:intron | 45.0% | |
| TGCTGGCAGATCGAAACTTA+TGG | - | chr4_2:19506142-19506161 | Msa0593370:intron | 45.0% | |
| GCTCATTTACCTCTCACTGT+TGG | + | chr4_2:19506755-19506774 | None:intergenic | 45.0% | |
| GCTTCATTCATTGCTAAGGC+TGG | - | chr4_2:19506948-19506967 | Msa0593370:intron | 45.0% | |
| TTGGACTGAGAAGACTGCTT+CGG | - | chr4_2:19507124-19507143 | Msa0593370:intron | 45.0% | |
| ATGTTATGGCTGATCCGAAG+CGG | - | chr4_2:19507250-19507269 | Msa0593370:intron | 45.0% | |
| ! | GTTCAGACTCTGAAGACTGA+AGG | - | chr4_2:19507445-19507464 | Msa0593370:intron | 45.0% |
| TGAAGCAAACTCAGCAAGAG+AGG | + | chr4_2:19507502-19507521 | None:intergenic | 45.0% | |
| AACACTGCTTTCTCGGTTCT+AGG | + | chr4_2:19507545-19507564 | None:intergenic | 45.0% | |
| TAGAACCGAGAAAGCAGTGT+TGG | - | chr4_2:19507544-19507563 | Msa0593370:intron | 45.0% | |
| TGCTACCAACACTGCTTTCT+CGG | + | chr4_2:19507552-19507571 | None:intergenic | 45.0% | |
| TTACAGTCCCATATGGAGCT+TGG | - | chr4_2:19507735-19507754 | Msa0593370:intron | 45.0% | |
| TGTGGAACCAAGCTCCATAT+GGG | + | chr4_2:19507745-19507764 | None:intergenic | 45.0% | |
| TTGTGGAACCAAGCTCCATA+TGG | + | chr4_2:19507746-19507765 | None:intergenic | 45.0% | |
| TATGGAGCTTGGTTCCACAA+AGG | - | chr4_2:19507746-19507765 | Msa0593370:intron | 45.0% | |
| !! | CCACTGCTGATTTGGAAAAC+TGG | + | chr4_2:19507865-19507884 | None:intergenic | 45.0% |
| ! | CCAGTTTTCCAAATCAGCAG+TGG | - | chr4_2:19507862-19507881 | Msa0593370:intron | 45.0% |
| CTATGTGTAGGATGGAGGTT+TGG | - | chr4_2:19508081-19508100 | Msa0593370:intron | 45.0% | |
| TGTTAACTTTCGCCACCGTA+CGG | - | chr4_2:19508124-19508143 | Msa0593370:intron | 45.0% | |
| AGAAGGTTGTGCATAGGGTT+AGG | + | chr4_2:19508168-19508187 | None:intergenic | 45.0% | |
| !! | GCTCTAGAAGGTTGTGCATA+GGG | + | chr4_2:19508173-19508192 | None:intergenic | 45.0% |
| !! | TGCTCTAGAAGGTTGTGCAT+AGG | + | chr4_2:19508174-19508193 | None:intergenic | 45.0% |
| CAATCCCCTACCATTCACAA+AGG | + | chr4_2:19508213-19508232 | None:intergenic | 45.0% | |
| CGAAAACTGAGCCAAACTGA+AGG | + | chr4_2:19508546-19508565 | None:intergenic | 45.0% | |
| ACTTGTGAGGAGGAAAACGG+CGG | + | chr4_2:19505585-19505604 | None:intergenic | 50.0% | |
| TAGATGCATATGACGCCCAC+CGG | + | chr4_2:19505650-19505669 | None:intergenic | 50.0% | |
| TTTACCTTTGACAGGGACGG+AGG | + | chr4_2:19505820-19505839 | None:intergenic | 50.0% | |
| GCCCCTACACAAGCATAACA+AGG | - | chr4_2:19506037-19506056 | Msa0593370:intron | 50.0% | |
| GGCTAGGTTCAAAGATGCCA+AGG | + | chr4_2:19506639-19506658 | None:intergenic | 50.0% | |
| !! | TTGGTGTGAGGGTGCTACAT+TGG | + | chr4_2:19506736-19506755 | None:intergenic | 50.0% |
| ACCTCTCACTGTTGGTGTGA+GGG | + | chr4_2:19506747-19506766 | None:intergenic | 50.0% | |
| TACCTCTCACTGTTGGTGTG+AGG | + | chr4_2:19506748-19506767 | None:intergenic | 50.0% | |
| TGCTAAGGCTGGGAAGTTGA+AGG | - | chr4_2:19506959-19506978 | Msa0593370:intron | 50.0% | |
| TAAGGCTGGGAAGTTGAAGG+AGG | - | chr4_2:19506962-19506981 | Msa0593370:intron | 50.0% | |
| AAGACTGCTTCGGAGGAAGA+AGG | - | chr4_2:19507134-19507153 | Msa0593370:intron | 50.0% | |
| TGTTATGGCTGATCCGAAGC+GGG | - | chr4_2:19507251-19507270 | Msa0593370:intron | 50.0% | |
| GCAACGGCACAACGAATTCT+TGG | + | chr4_2:19507664-19507683 | None:intergenic | 50.0% | |
| ! | GAATTCGTTGTGCCGTTGCT+AGG | - | chr4_2:19507665-19507684 | Msa0593370:intron | 50.0% |
| AGTGCTCGAGAACCTAGCAA+CGG | + | chr4_2:19507680-19507699 | None:intergenic | 50.0% | |
| ATAGTGGCGCTATTGCGTAG+TGG | - | chr4_2:19507913-19507932 | Msa0593370:intron | 50.0% | |
| CGATTCGTGGTTGACATCAC+TGG | - | chr4_2:19508021-19508040 | Msa0593370:intron | 50.0% | |
| GTTAACTTTCGCCACCGTAC+GGG | - | chr4_2:19508125-19508144 | Msa0593370:intron | 50.0% | |
| TTAACTTTCGCCACCGTACG+GGG | - | chr4_2:19508126-19508145 | Msa0593370:intron | 50.0% | |
| CGCCGAGATTACTTGTGAGG+AGG | + | chr4_2:19505595-19505614 | None:intergenic | 55.0% | |
| ! | TGGCGCCGAGATTACTTGTG+AGG | + | chr4_2:19505598-19505617 | None:intergenic | 55.0% |
| GTGATGCTATCGGAGGAAGG+TGG | + | chr4_2:19505618-19505637 | None:intergenic | 55.0% | |
| GAGGTGATGCTATCGGAGGA+AGG | + | chr4_2:19505621-19505640 | None:intergenic | 55.0% | |
| GAAGGAGGTGATGCTATCGG+AGG | + | chr4_2:19505625-19505644 | None:intergenic | 55.0% | |
| CATCACCTCCTTCTTCCGGT+GGG | - | chr4_2:19505632-19505651 | Msa0593370:three_prime_UTR | 55.0% | |
| ATATGACGCCCACCGGAAGA+AGG | + | chr4_2:19505643-19505662 | None:intergenic | 55.0% | |
| GGAGGACGAAGATGCGAAAC+CGG | + | chr4_2:19505802-19505821 | None:intergenic | 55.0% | |
| ACCCTCACACCAACAGTGAG+AGG | - | chr4_2:19506743-19506762 | Msa0593370:intron | 55.0% | |
| GACTGAGAAGACTGCTTCGG+AGG | - | chr4_2:19507127-19507146 | Msa0593370:intron | 55.0% | |
| GCATCACCTCCTTCTTCCGG+TGG | - | chr4_2:19505631-19505650 | Msa0593370:three_prime_UTR | 60.0% | |
| TCGTCCTCCGTCCCTGTCAA+AGG | - | chr4_2:19505813-19505832 | Msa0593370:three_prime_UTR | 60.0% | |
| !! | CTGATCCGAAGCGGGCTAAG+AGG | - | chr4_2:19507259-19507278 | Msa0593370:intron | 60.0% |
| CAGCACCTCTTAGCCCGCTT+CGG | + | chr4_2:19507267-19507286 | None:intergenic | 60.0% | |
| CATGTGAGCTGCTCCCCGTA+CGG | + | chr4_2:19508142-19508161 | None:intergenic | 60.0% | |
| TGACGCCCACCGGAAGAAGG+AGG | + | chr4_2:19505640-19505659 | None:intergenic | 65.0% | |
| CGTACGGGGAGCAGCTCACA+TGG | - | chr4_2:19508140-19508159 | Msa0593370:intron | 65.0% | |
| GTGAGCTGCTCCCCGTACGG+TGG | + | chr4_2:19508139-19508158 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 19505459 | 19508629 | 19505459 | ID=Msa0593370;Name=Msa0593370 |
| chr4_2 | mRNA | 19505459 | 19508629 | 19505459 | ID=Msa0593370-mRNA-1;Parent=Msa0593370;Name=Msa0593370-mRNA-1;_AED=0.24;_eAED=0.24;_QI=313|0.8|0.83|1|0.2|0.5|6|676|77 |
| chr4_2 | exon | 19505459 | 19505997 | 19505459 | ID=Msa0593370-mRNA-1:exon:5589;Parent=Msa0593370-mRNA-1 |
| chr4_2 | exon | 19506316 | 19506433 | 19506316 | ID=Msa0593370-mRNA-1:exon:5588;Parent=Msa0593370-mRNA-1 |
| chr4_2 | exon | 19506523 | 19506719 | 19506523 | ID=Msa0593370-mRNA-1:exon:5587;Parent=Msa0593370-mRNA-1 |
| chr4_2 | exon | 19506808 | 19506896 | 19506808 | ID=Msa0593370-mRNA-1:exon:5586;Parent=Msa0593370-mRNA-1 |
| chr4_2 | exon | 19508254 | 19508389 | 19508254 | ID=Msa0593370-mRNA-1:exon:5585;Parent=Msa0593370-mRNA-1 |
| chr4_2 | exon | 19508486 | 19508629 | 19508486 | ID=Msa0593370-mRNA-1:exon:5584;Parent=Msa0593370-mRNA-1 |
| chr4_2 | five_prime_UTR | 19508486 | 19508629 | 19508486 | ID=Msa0593370-mRNA-1:five_prime_utr;Parent=Msa0593370-mRNA-1 |
| chr4_2 | five_prime_UTR | 19508254 | 19508389 | 19508254 | ID=Msa0593370-mRNA-1:five_prime_utr;Parent=Msa0593370-mRNA-1 |
| chr4_2 | five_prime_UTR | 19506864 | 19506896 | 19506864 | ID=Msa0593370-mRNA-1:five_prime_utr;Parent=Msa0593370-mRNA-1 |
| chr4_2 | CDS | 19506808 | 19506863 | 19506808 | ID=Msa0593370-mRNA-1:cds;Parent=Msa0593370-mRNA-1 |
| chr4_2 | CDS | 19506542 | 19506719 | 19506542 | ID=Msa0593370-mRNA-1:cds;Parent=Msa0593370-mRNA-1 |
| chr4_2 | three_prime_UTR | 19506523 | 19506541 | 19506523 | ID=Msa0593370-mRNA-1:three_prime_utr;Parent=Msa0593370-mRNA-1 |
| chr4_2 | three_prime_UTR | 19506316 | 19506433 | 19506316 | ID=Msa0593370-mRNA-1:three_prime_utr;Parent=Msa0593370-mRNA-1 |
| chr4_2 | three_prime_UTR | 19505459 | 19505997 | 19505459 | ID=Msa0593370-mRNA-1:three_prime_utr;Parent=Msa0593370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
