Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594400 | XP_039685680.1 | 83.855 | 799 | 109 | 3 | 1 | 779 | 1 | 799 | 0.0 | 1367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594400 | sp|Q9SZL8|FRS5_ARATH | 26.101 | 636 | 400 | 12 | 32 | 665 | 70 | 637 | 2.68e-64 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594400 | D3YBB9 | 75.217 | 807 | 183 | 4 | 1 | 798 | 49 | 847 | 0.0 | 1264 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0594400 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594400 | MtrunA17_Chr3g0088371 | 82.609 | 184 | 29 | 1 | 618 | 798 | 1 | 184 | 1.18e-100 | 309 |
| Msa0594400 | MtrunA17_Chr3g0082121 | 31.114 | 691 | 388 | 17 | 41 | 727 | 49 | 655 | 1.49e-98 | 321 |
| Msa0594400 | MtrunA17_Chr2g0324011 | 30.346 | 636 | 365 | 13 | 36 | 665 | 8 | 571 | 4.87e-98 | 317 |
| Msa0594400 | MtrunA17_Chr1g0202341 | 29.449 | 635 | 367 | 17 | 34 | 662 | 50 | 609 | 1.99e-79 | 269 |
| Msa0594400 | MtrunA17_Chr8g0363841 | 28.413 | 630 | 376 | 15 | 40 | 665 | 22 | 580 | 3.33e-72 | 249 |
| Msa0594400 | MtrunA17_Chr1g0203721 | 25.931 | 725 | 445 | 18 | 40 | 752 | 68 | 712 | 6.64e-69 | 244 |
| Msa0594400 | MtrunA17_Chr2g0296781 | 27.099 | 679 | 409 | 19 | 39 | 708 | 1 | 602 | 3.42e-66 | 234 |
| Msa0594400 | MtrunA17_Chr5g0448761 | 24.894 | 707 | 452 | 15 | 31 | 728 | 56 | 692 | 1.79e-65 | 233 |
| Msa0594400 | MtrunA17_Chr1g0164591 | 35.312 | 320 | 192 | 4 | 131 | 448 | 1 | 307 | 2.00e-63 | 216 |
| Msa0594400 | MtrunA17_Chr6g0458391 | 26.108 | 632 | 360 | 15 | 41 | 662 | 231 | 765 | 1.27e-62 | 224 |
| Msa0594400 | MtrunA17_Chr6g0477261 | 28.463 | 527 | 319 | 13 | 180 | 699 | 7 | 482 | 4.58e-61 | 218 |
| Msa0594400 | MtrunA17_Chr2g0287651 | 25.755 | 629 | 387 | 14 | 39 | 662 | 79 | 632 | 3.40e-58 | 213 |
| Msa0594400 | MtrunA17_Chr5g0441581 | 24.868 | 760 | 459 | 22 | 32 | 774 | 26 | 690 | 5.04e-58 | 210 |
| Msa0594400 | MtrunA17_Chr1g0172971 | 82.906 | 117 | 19 | 1 | 1 | 116 | 1 | 117 | 4.19e-56 | 202 |
| Msa0594400 | MtrunA17_Chr1g0198761 | 27.106 | 653 | 378 | 21 | 26 | 660 | 38 | 610 | 1.51e-52 | 196 |
| Msa0594400 | MtrunA17_Chr1g0196541 | 23.816 | 760 | 489 | 19 | 39 | 794 | 1 | 674 | 1.69e-52 | 195 |
| Msa0594400 | MtrunA17_Chr1g0207551 | 24.464 | 699 | 430 | 18 | 31 | 718 | 30 | 641 | 7.14e-52 | 194 |
| Msa0594400 | MtrunA17_Chr5g0440451 | 23.729 | 708 | 433 | 18 | 34 | 721 | 42 | 662 | 1.85e-51 | 194 |
| Msa0594400 | MtrunA17_Chr2g0329031 | 24.403 | 754 | 455 | 21 | 23 | 757 | 2 | 659 | 3.44e-51 | 191 |
| Msa0594400 | MtrunA17_Chr7g0258861 | 34.314 | 306 | 177 | 6 | 36 | 336 | 8 | 294 | 1.14e-50 | 180 |
| Msa0594400 | MtrunA17_Chr3g0118611 | 27.038 | 503 | 307 | 11 | 221 | 719 | 111 | 557 | 2.90e-49 | 186 |
| Msa0594400 | MtrunA17_Chr1g0203051 | 22.542 | 590 | 388 | 8 | 50 | 637 | 94 | 616 | 5.98e-48 | 180 |
| Msa0594400 | MtrunA17_Chr3g0080351 | 24.531 | 693 | 423 | 18 | 34 | 718 | 75 | 675 | 8.87e-47 | 179 |
| Msa0594400 | MtrunA17_Chr2g0276841 | 25.786 | 636 | 376 | 19 | 49 | 670 | 84 | 637 | 1.26e-46 | 177 |
| Msa0594400 | MtrunA17_Chr2g0290391 | 25.701 | 642 | 374 | 19 | 38 | 660 | 54 | 611 | 1.60e-46 | 177 |
| Msa0594400 | MtrunA17_Chr2g0287061 | 24.066 | 669 | 377 | 20 | 41 | 694 | 189 | 741 | 2.18e-45 | 175 |
| Msa0594400 | MtrunA17_Chr5g0431001 | 28.603 | 451 | 277 | 12 | 40 | 473 | 66 | 488 | 2.01e-43 | 164 |
| Msa0594400 | MtrunA17_Chr2g0291591 | 26.148 | 501 | 310 | 13 | 16 | 499 | 44 | 501 | 1.34e-42 | 163 |
| Msa0594400 | MtrunA17_Chr2g0291581 | 23.248 | 628 | 399 | 13 | 38 | 662 | 74 | 621 | 1.20e-41 | 162 |
| Msa0594400 | MtrunA17_Chr5g0448511 | 25.221 | 452 | 284 | 11 | 216 | 665 | 1 | 400 | 7.11e-41 | 158 |
| Msa0594400 | MtrunA17_Chr6g0475591 | 89.041 | 73 | 8 | 0 | 188 | 260 | 1 | 73 | 1.77e-39 | 140 |
| Msa0594400 | MtrunA17_Chr2g0294841 | 25.903 | 637 | 368 | 24 | 41 | 657 | 51 | 603 | 5.31e-37 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594400 | AT4G38180.1 | 26.101 | 636 | 400 | 12 | 32 | 665 | 70 | 637 | 2.73e-65 | 233 |
| Msa0594400 | AT4G15090.1 | 24.423 | 737 | 464 | 16 | 50 | 783 | 66 | 712 | 2.04e-57 | 211 |
| Msa0594400 | AT4G15090.5 | 24.423 | 737 | 464 | 16 | 50 | 783 | 66 | 712 | 2.04e-57 | 211 |
| Msa0594400 | AT4G15090.3 | 24.423 | 737 | 464 | 16 | 50 | 783 | 66 | 712 | 2.04e-57 | 211 |
| Msa0594400 | AT4G15090.2 | 24.423 | 737 | 464 | 16 | 50 | 783 | 66 | 712 | 2.04e-57 | 211 |
| Msa0594400 | AT4G15090.4 | 24.423 | 737 | 464 | 16 | 50 | 783 | 66 | 712 | 2.04e-57 | 211 |
| Msa0594400 | AT2G27110.2 | 24.444 | 720 | 432 | 19 | 4 | 719 | 23 | 634 | 2.47e-50 | 190 |
| Msa0594400 | AT2G27110.1 | 24.444 | 720 | 432 | 19 | 4 | 719 | 23 | 634 | 2.47e-50 | 190 |
| Msa0594400 | AT2G27110.3 | 26.523 | 509 | 317 | 11 | 213 | 719 | 36 | 489 | 4.32e-50 | 188 |
| Msa0594400 | AT3G06250.2 | 24.645 | 633 | 354 | 16 | 34 | 661 | 189 | 703 | 2.90e-49 | 186 |
| Msa0594400 | AT3G06250.1 | 24.645 | 633 | 354 | 16 | 34 | 661 | 189 | 703 | 2.90e-49 | 186 |
| Msa0594400 | AT3G06250.3 | 24.645 | 633 | 354 | 16 | 34 | 661 | 189 | 703 | 2.90e-49 | 186 |
| Msa0594400 | AT1G76320.3 | 24.372 | 677 | 416 | 19 | 50 | 720 | 12 | 598 | 3.37e-47 | 179 |
| Msa0594400 | AT1G76320.2 | 24.372 | 677 | 416 | 19 | 50 | 720 | 12 | 598 | 7.38e-47 | 179 |
| Msa0594400 | AT1G76320.1 | 24.372 | 677 | 416 | 19 | 50 | 720 | 12 | 598 | 8.65e-47 | 179 |
| Msa0594400 | AT1G76320.4 | 24.372 | 677 | 416 | 19 | 50 | 720 | 12 | 598 | 8.65e-47 | 179 |
| Msa0594400 | AT3G22170.2 | 22.678 | 732 | 445 | 18 | 34 | 753 | 69 | 691 | 2.44e-44 | 172 |
| Msa0594400 | AT3G22170.1 | 22.678 | 732 | 445 | 18 | 34 | 753 | 69 | 691 | 2.44e-44 | 172 |
| Msa0594400 | AT5G18960.2 | 23.721 | 645 | 368 | 18 | 24 | 661 | 200 | 727 | 6.79e-44 | 171 |
| Msa0594400 | AT5G18960.1 | 23.721 | 645 | 368 | 18 | 24 | 661 | 200 | 727 | 6.79e-44 | 171 |
| Msa0594400 | AT1G10240.2 | 25.160 | 624 | 373 | 19 | 49 | 659 | 62 | 604 | 7.49e-43 | 166 |
| Msa0594400 | AT1G10240.1 | 25.160 | 624 | 373 | 19 | 49 | 659 | 62 | 604 | 7.49e-43 | 166 |
| Msa0594400 | AT4G38170.1 | 25.522 | 431 | 263 | 12 | 235 | 662 | 24 | 399 | 1.70e-42 | 163 |
| Msa0594400 | AT5G28530.1 | 24.570 | 639 | 385 | 19 | 40 | 660 | 60 | 619 | 8.49e-42 | 163 |
| Msa0594400 | AT5G28530.3 | 24.413 | 639 | 382 | 20 | 40 | 660 | 60 | 615 | 4.50e-41 | 161 |
| Msa0594400 | AT5G28530.2 | 24.413 | 639 | 382 | 20 | 40 | 660 | 60 | 615 | 4.50e-41 | 161 |
| Msa0594400 | AT2G32250.5 | 23.067 | 750 | 435 | 22 | 1 | 743 | 8 | 622 | 3.67e-37 | 150 |
| Msa0594400 | AT2G32250.6 | 23.067 | 750 | 435 | 22 | 1 | 743 | 8 | 622 | 6.20e-37 | 149 |
| Msa0594400 | AT2G32250.1 | 23.067 | 750 | 435 | 22 | 1 | 743 | 8 | 622 | 6.20e-37 | 149 |
| Msa0594400 | AT2G32250.3 | 23.067 | 750 | 435 | 22 | 1 | 743 | 8 | 622 | 6.20e-37 | 149 |
| Msa0594400 | AT2G32250.2 | 23.067 | 750 | 435 | 22 | 1 | 743 | 8 | 622 | 7.16e-37 | 149 |
| Msa0594400 | AT2G32250.4 | 23.067 | 750 | 435 | 22 | 1 | 743 | 8 | 622 | 7.16e-37 | 149 |
| Msa0594400 | AT1G80010.1 | 24.100 | 639 | 390 | 22 | 41 | 662 | 101 | 661 | 7.30e-37 | 149 |
| Msa0594400 | AT2G32250.8 | 23.252 | 701 | 400 | 20 | 50 | 743 | 12 | 581 | 1.48e-36 | 148 |
| Msa0594400 | AT2G32250.7 | 23.252 | 701 | 400 | 20 | 50 | 743 | 12 | 581 | 1.72e-36 | 147 |
| Msa0594400 | AT1G52520.1 | 23.211 | 629 | 395 | 20 | 41 | 662 | 91 | 638 | 1.99e-32 | 135 |
| Msa0594400 | AT4G19990.5 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.47e-27 | 119 |
| Msa0594400 | AT4G19990.5 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 1.98e-11 | 68.2 |
| Msa0594400 | AT4G19990.3 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.68e-27 | 119 |
| Msa0594400 | AT4G19990.3 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 1.98e-11 | 68.2 |
| Msa0594400 | AT4G19990.4 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.68e-27 | 119 |
| Msa0594400 | AT4G19990.4 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 1.98e-11 | 68.2 |
| Msa0594400 | AT4G19990.1 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 2.78e-27 | 118 |
| Msa0594400 | AT4G19990.1 | 34.586 | 133 | 73 | 3 | 591 | 721 | 438 | 558 | 1.94e-11 | 68.2 |
| Msa0594400 | AT4G19990.7 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 3.14e-27 | 119 |
| Msa0594400 | AT4G19990.7 | 34.586 | 133 | 73 | 3 | 591 | 721 | 509 | 629 | 2.28e-11 | 68.2 |
| Msa0594400 | AT4G19990.6 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.52e-27 | 118 |
| Msa0594400 | AT4G19990.6 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 2.00e-11 | 68.2 |
| Msa0594400 | AT4G19990.2 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.52e-27 | 118 |
| Msa0594400 | AT4G19990.2 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 2.00e-11 | 68.2 |
| Msa0594400 | AT5G28530.4 | 22.258 | 629 | 349 | 22 | 40 | 660 | 60 | 556 | 9.50e-23 | 103 |
| Msa0594400 | AT5G28530.5 | 22.099 | 629 | 346 | 23 | 40 | 660 | 60 | 552 | 4.87e-22 | 102 |
Find 123 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 4_2:+22171928 | Msa0594400:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 4_2:+22172195 | Msa0594400:CDS |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 4_2:+22171647 | Msa0594400:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 4_2:+22171124 | Msa0594400:CDS |
| TTCTTTGACCTAATTGAATT+TGG | 0.258632 | 4_2:-22173057 | None:intergenic |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 4_2:+22171680 | Msa0594400:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 4_2:-22171774 | None:intergenic |
| TGATGAGGCTTTAACTAAAA+AGG | 0.308780 | 4_2:+22173217 | Msa0594400:three_prime_UTR |
| GGTTTCAAATGTTGATGTTT+TGG | 0.317051 | 4_2:+22172492 | Msa0594400:CDS |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 4_2:+22171969 | Msa0594400:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 4_2:+22172909 | Msa0594400:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 4_2:-22171792 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 4_2:-22171174 | None:intergenic |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 4_2:-22173125 | None:intergenic |
| GAGGGATAATCATGCTGATT+TGG | 0.346844 | 4_2:+22172228 | Msa0594400:CDS |
| AAGAAAGACCAAATTCAATT+AGG | 0.357418 | 4_2:+22173049 | Msa0594400:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 4_2:-22172785 | None:intergenic |
| CTCAAGTAGCGCAAATGCTT+TGG | 0.369487 | 4_2:-22170791 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 4_2:+22172069 | Msa0594400:CDS |
| AATTCTTGATTGTTATGTAT+TGG | 0.372244 | 4_2:+22173287 | Msa0594400:three_prime_UTR |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.385451 | 4_2:-22173039 | None:intergenic |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 4_2:+22172901 | Msa0594400:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 4_2:+22171181 | Msa0594400:CDS |
| TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 4_2:+22172237 | Msa0594400:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 4_2:+22171173 | Msa0594400:CDS |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | 4_2:+22170261 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 4_2:+22172068 | Msa0594400:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 4_2:-22170644 | None:intergenic |
| TCTTTCATGGTCTTTGCTCA+TGG | 0.397740 | 4_2:+22171852 | Msa0594400:CDS |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 4_2:-22170405 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 4_2:+22170415 | Msa0594400:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 4_2:+22172617 | Msa0594400:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 4_2:-22172540 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 4_2:+22170486 | Msa0594400:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 4_2:-22172541 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 4_2:+22170821 | Msa0594400:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.430573 | 4_2:+22172934 | Msa0594400:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 4_2:+22170703 | Msa0594400:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 4_2:+22170735 | Msa0594400:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 4_2:-22171785 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 4_2:+22170686 | Msa0594400:CDS |
| GGGTTGTCACAATCGACATT+AGG | 0.449394 | 4_2:+22172575 | Msa0594400:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 4_2:+22170851 | Msa0594400:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 4_2:+22170340 | Msa0594400:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 4_2:+22171859 | Msa0594400:CDS |
| CTCCTCAAAATAGTATTTGA+AGG | 0.453936 | 4_2:-22172371 | None:intergenic |
| TTGGTTTGAATATTATGTTC+TGG | 0.458981 | 4_2:+22173306 | Msa0594400:three_prime_UTR |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 4_2:+22172618 | Msa0594400:CDS |
| GGCCTACTTCAGACTTTAAG+TGG | 0.462107 | 4_2:+22172023 | Msa0594400:CDS |
| CGCAAACACGTGTAGAAAGC+TGG | 0.465682 | 4_2:-22172852 | None:intergenic |
| AAATGCTTTGGTTTATGTAA+TGG | 0.467024 | 4_2:-22170779 | None:intergenic |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 4_2:+22170535 | Msa0594400:CDS |
| TTTGAGGAGGACACAACAAA+AGG | 0.469432 | 4_2:+22172385 | Msa0594400:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 4_2:-22170680 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 4_2:+22170473 | Msa0594400:CDS |
| CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 4_2:+22173010 | Msa0594400:CDS |
| TCTAATGACGACTCGTCAAA+AGG | 0.488508 | 4_2:+22170964 | Msa0594400:CDS |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 4_2:+22170529 | Msa0594400:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 4_2:-22171660 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 4_2:+22171970 | Msa0594400:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 4_2:+22170977 | Msa0594400:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 4_2:+22172209 | Msa0594400:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 4_2:-22172289 | None:intergenic |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 4_2:-22171069 | None:intergenic |
| GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 4_2:+22173009 | Msa0594400:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.506927 | 4_2:+22172074 | Msa0594400:CDS |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 4_2:+22172056 | Msa0594400:CDS |
| CTGACTGTGAATAAATGAAA+AGG | 0.507491 | 4_2:-22172338 | None:intergenic |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 4_2:+22172554 | Msa0594400:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 4_2:-22170935 | None:intergenic |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 4_2:-22172534 | None:intergenic |
| CAAAATAGTATTTGAAGGAA+AGG | 0.519540 | 4_2:-22172366 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 4_2:-22172177 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 4_2:+22170739 | Msa0594400:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 4_2:+22172555 | Msa0594400:CDS |
| TTGAGGAGGACACAACAAAA+GGG | 0.529908 | 4_2:+22172386 | Msa0594400:CDS |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 4_2:+22173115 | Msa0594400:CDS |
| CTGAAATCTACCATGAATGT+TGG | 0.534154 | 4_2:+22172775 | Msa0594400:CDS |
| AGAACATCTTATGAAGTGAT+TGG | 0.537979 | 4_2:+22170884 | Msa0594400:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 4_2:+22170580 | Msa0594400:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 4_2:-22172172 | None:intergenic |
| TGTTATGCTTGTAACAAAGA+AGG | 0.541604 | 4_2:+22170569 | Msa0594400:CDS |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 4_2:+22170405 | Msa0594400:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 4_2:+22170581 | Msa0594400:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 4_2:-22171805 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 4_2:+22171031 | Msa0594400:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 4_2:+22170364 | Msa0594400:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 4_2:+22172861 | Msa0594400:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 4_2:-22172290 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 4_2:-22173021 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 4_2:+22173140 | Msa0594400:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 4_2:-22172311 | None:intergenic |
| TGAATAAATGAAAAGGAAGA+TGG | 0.586737 | 4_2:-22172331 | None:intergenic |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 4_2:+22172902 | Msa0594400:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 4_2:+22171791 | Msa0594400:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 4_2:+22172897 | Msa0594400:CDS |
| GAAGTGATTGGTGAAGGTGT+TGG | 0.591767 | 4_2:+22170896 | Msa0594400:CDS |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 4_2:+22173202 | Msa0594400:three_prime_UTR |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 4_2:-22172977 | None:intergenic |
| TTGAAGGAAACCTTTCCCCA+AGG | 0.600566 | 4_2:+22172524 | Msa0594400:CDS |
| GAGGCTTTAACAATTTAAGC+GGG | 0.600751 | 4_2:+22173159 | Msa0594400:exon |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 4_2:-22172809 | None:intergenic |
| TGGTGAAGGTGTTGGAGGCA+CGG | 0.604078 | 4_2:+22170904 | Msa0594400:CDS |
| GACGACTCGTCAAAAGGAGA+TGG | 0.604288 | 4_2:+22170970 | Msa0594400:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 4_2:+22172864 | Msa0594400:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 4_2:+22172287 | Msa0594400:CDS |
| GTGATTGGTGAAGGTGTTGG+AGG | 0.606476 | 4_2:+22170899 | Msa0594400:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.609132 | 4_2:+22172470 | Msa0594400:CDS |
| GACTCGTCAAAAGGAGATGG+TGG | 0.611157 | 4_2:+22170973 | Msa0594400:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 4_2:+22170329 | Msa0594400:CDS |
| AGCCACTTAAAGTCTGAAGT+AGG | 0.617789 | 4_2:-22172025 | None:intergenic |
| TGTTGATAATGATAATGAGA+GGG | 0.618346 | 4_2:+22172471 | Msa0594400:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 4_2:-22170629 | None:intergenic |
| TGAGGCTTTAACAATTTAAG+CGG | 0.627823 | 4_2:+22173158 | Msa0594400:exon |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 4_2:-22172539 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 4_2:+22171860 | Msa0594400:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 4_2:+22172210 | Msa0594400:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 4_2:+22170738 | Msa0594400:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 4_2:-22172760 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 4_2:+22172886 | Msa0594400:CDS |
| TCTTATGAAGTGATTGGTGA+AGG | 0.666859 | 4_2:+22170890 | Msa0594400:CDS |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 4_2:+22171787 | Msa0594400:CDS |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 4_2:+22172619 | Msa0594400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTATGTTATAAGTT+AGG | + | chr4_2:22173189-22173208 | Msa0594400:three_prime_UTR | 15.0% |
| !! | TTTAATTATGCATATAACAC+TGG | + | chr4_2:22170473-22170492 | Msa0594400:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | + | chr4_2:22170529-22170548 | Msa0594400:CDS | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | + | chr4_2:22170735-22170754 | Msa0594400:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | + | chr4_2:22171328-22171347 | Msa0594400:intron | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+TGG | + | chr4_2:22171356-22171375 | Msa0594400:intron | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr4_2:22171998-22172017 | Msa0594400:CDS | 20.0% |
| !! | AATTCTTGATTGTTATGTAT+TGG | + | chr4_2:22173287-22173306 | Msa0594400:three_prime_UTR | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | + | chr4_2:22170364-22170383 | Msa0594400:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr4_2:22170525-22170544 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | + | chr4_2:22170535-22170554 | Msa0594400:CDS | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | + | chr4_2:22170738-22170757 | Msa0594400:CDS | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | + | chr4_2:22170739-22170758 | Msa0594400:CDS | 25.0% |
| !! | AAATGCTTTGGTTTATGTAA+TGG | - | chr4_2:22170782-22170801 | None:intergenic | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr4_2:22170851-22170870 | Msa0594400:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr4_2:22171086-22171105 | Msa0594400:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | + | chr4_2:22171087-22171106 | Msa0594400:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr4_2:22171173-22171192 | Msa0594400:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr4_2:22171199-22171218 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr4_2:22171246-22171265 | Msa0594400:intron | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr4_2:22171348-22171367 | Msa0594400:intron | 25.0% |
| ! | AAACACATATGATCTTTCTA+TGG | - | chr4_2:22171419-22171438 | None:intergenic | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr4_2:22171618-22171637 | Msa0594400:intron | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | + | chr4_2:22171928-22171947 | Msa0594400:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr4_2:22172002-22172021 | Msa0594400:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr4_2:22172195-22172214 | Msa0594400:CDS | 25.0% |
| ! | TGAATAAATGAAAAGGAAGA+TGG | - | chr4_2:22172334-22172353 | None:intergenic | 25.0% |
| ! | CAAAATAGTATTTGAAGGAA+AGG | - | chr4_2:22172369-22172388 | None:intergenic | 25.0% |
| !! | TTCCTTCAAATACTATTTTG+AGG | + | chr4_2:22172369-22172388 | Msa0594400:CDS | 25.0% |
| !! | CAAAGTTTTTACAATTGAGA+AGG | + | chr4_2:22172429-22172448 | Msa0594400:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | + | chr4_2:22172470-22172489 | Msa0594400:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | + | chr4_2:22172471-22172490 | Msa0594400:CDS | 25.0% |
| ! | AAGAAAGACCAAATTCAATT+AGG | + | chr4_2:22173049-22173068 | Msa0594400:CDS | 25.0% |
| ! | TTCTTTGACCTAATTGAATT+TGG | - | chr4_2:22173060-22173079 | None:intergenic | 25.0% |
| !! | AAAGTGTTTATGAAAAAGCT+AGG | + | chr4_2:22173088-22173107 | Msa0594400:CDS | 25.0% |
| ! | AAGTGTTTATGAAAAAGCTA+GGG | + | chr4_2:22173089-22173108 | Msa0594400:CDS | 25.0% |
| CCATGATTCTTTATCACTAA+AGG | - | chr4_2:22170408-22170427 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | + | chr4_2:22170405-22170424 | Msa0594400:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | + | chr4_2:22170415-22170434 | Msa0594400:CDS | 30.0% | |
| TGTTATGCTTGTAACAAAGA+AGG | + | chr4_2:22170569-22170588 | Msa0594400:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr4_2:22170580-22170599 | Msa0594400:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr4_2:22170581-22170600 | Msa0594400:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | + | chr4_2:22170670-22170689 | Msa0594400:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | + | chr4_2:22170703-22170722 | Msa0594400:CDS | 30.0% |
| AGAACATCTTATGAAGTGAT+TGG | + | chr4_2:22170884-22170903 | Msa0594400:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr4_2:22170928-22170947 | Msa0594400:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr4_2:22170938-22170957 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | - | chr4_2:22171052-22171071 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | + | chr4_2:22171124-22171143 | Msa0594400:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr4_2:22171177-22171196 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr4_2:22171181-22171200 | Msa0594400:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr4_2:22171260-22171279 | Msa0594400:intron | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | + | chr4_2:22171285-22171304 | Msa0594400:intron | 30.0% | |
| CACAAATTCTAAGTCAAGAT+AGG | - | chr4_2:22171386-22171405 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | + | chr4_2:22171577-22171596 | Msa0594400:intron | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr4_2:22171663-22171682 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr4_2:22171777-22171796 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | + | chr4_2:22171827-22171846 | Msa0594400:CDS | 30.0% |
| AAGACACCTTGAAAAACATT+CGG | - | chr4_2:22171836-22171855 | None:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr4_2:22171884-22171903 | Msa0594400:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | + | chr4_2:22171969-22171988 | Msa0594400:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | + | chr4_2:22171970-22171989 | Msa0594400:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr4_2:22172180-22172199 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | - | chr4_2:22172314-22172333 | None:intergenic | 30.0% | |
| CTGACTGTGAATAAATGAAA+AGG | - | chr4_2:22172341-22172360 | None:intergenic | 30.0% | |
| CTCCTCAAAATAGTATTTGA+AGG | - | chr4_2:22172374-22172393 | None:intergenic | 30.0% | |
| !! | CTTCAAATACTATTTTGAGG+AGG | + | chr4_2:22172372-22172391 | Msa0594400:CDS | 30.0% |
| ! | GGTTTCAAATGTTGATGTTT+TGG | + | chr4_2:22172492-22172511 | Msa0594400:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | - | chr4_2:22172542-22172561 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | - | chr4_2:22172543-22172562 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | + | chr4_2:22172554-22172573 | Msa0594400:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | + | chr4_2:22172555-22172574 | Msa0594400:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | + | chr4_2:22172651-22172670 | Msa0594400:CDS | 30.0% |
| !!! | TTCAAGATTTTGGAGTTCTT+AGG | + | chr4_2:22172661-22172680 | Msa0594400:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | + | chr4_2:22172719-22172738 | Msa0594400:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | + | chr4_2:22172886-22172905 | Msa0594400:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr4_2:22172934-22172953 | Msa0594400:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr4_2:22173042-22173061 | None:intergenic | 30.0% |
| ! | TGAGGCTTTAACAATTTAAG+CGG | + | chr4_2:22173158-22173177 | Msa0594400:exon | 30.0% |
| ATAAGTTAGGAAAGATGATG+AGG | + | chr4_2:22173202-22173221 | Msa0594400:three_prime_UTR | 30.0% | |
| ! | TGATGAGGCTTTAACTAAAA+AGG | + | chr4_2:22173217-22173236 | Msa0594400:three_prime_UTR | 30.0% |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | + | chr4_2:22170301-22170320 | Msa0594400:exon | 35.0% |
| ATATCAACTTCATCTGAGAG+TGG | + | chr4_2:22170329-22170348 | Msa0594400:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | + | chr4_2:22170486-22170505 | Msa0594400:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | + | chr4_2:22170606-22170625 | Msa0594400:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | - | chr4_2:22170647-22170666 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | + | chr4_2:22170664-22170683 | Msa0594400:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | + | chr4_2:22170669-22170688 | Msa0594400:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr4_2:22170821-22170840 | Msa0594400:CDS | 35.0% | |
| TCTTATGAAGTGATTGGTGA+AGG | + | chr4_2:22170890-22170909 | Msa0594400:CDS | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | + | chr4_2:22171680-22171699 | Msa0594400:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | + | chr4_2:22171723-22171742 | Msa0594400:CDS | 35.0% |
| !!! | GTTTTTCAAGGTGTCTTTCA+TGG | + | chr4_2:22171839-22171858 | Msa0594400:CDS | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | + | chr4_2:22172056-22172075 | Msa0594400:CDS | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | + | chr4_2:22172069-22172088 | Msa0594400:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr4_2:22172139-22172158 | Msa0594400:CDS | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | + | chr4_2:22172209-22172228 | Msa0594400:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr4_2:22172210-22172229 | Msa0594400:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | - | chr4_2:22172544-22172563 | None:intergenic | 35.0% | |
| !!! | AAGATTTTGGAGTTCTTAGG+TGG | + | chr4_2:22172664-22172683 | Msa0594400:CDS | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | + | chr4_2:22172722-22172741 | Msa0594400:CDS | 35.0% |
| CTGAAATCTACCATGAATGT+TGG | + | chr4_2:22172775-22172794 | Msa0594400:CDS | 35.0% | |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr4_2:22172988-22173007 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | + | chr4_2:22173115-22173134 | Msa0594400:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | + | chr4_2:22173140-22173159 | Msa0594400:CDS | 35.0% | |
| ! | GAGGCTTTAACAATTTAAGC+GGG | + | chr4_2:22173159-22173178 | Msa0594400:exon | 35.0% |
| ! | TGAGGCTTTAACTAAAAAGG+TGG | + | chr4_2:22173220-22173239 | Msa0594400:three_prime_UTR | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | + | chr4_2:22170340-22170359 | Msa0594400:CDS | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | - | chr4_2:22170620-22170639 | None:intergenic | 40.0% |
| TCTAATGACGACTCGTCAAA+AGG | + | chr4_2:22170964-22170983 | Msa0594400:CDS | 40.0% | |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | + | chr4_2:22171094-22171113 | Msa0594400:CDS | 40.0% |
| ! | TGGTTTAGAATTGAAGGCTC+TGG | + | chr4_2:22171266-22171285 | Msa0594400:intron | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | + | chr4_2:22171513-22171532 | Msa0594400:intron | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | - | chr4_2:22171517-22171536 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | + | chr4_2:22171647-22171666 | Msa0594400:intron | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | - | chr4_2:22171788-22171807 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | + | chr4_2:22171787-22171806 | Msa0594400:CDS | 40.0% | |
| TCTTTCATGGTCTTTGCTCA+TGG | + | chr4_2:22171852-22171871 | Msa0594400:CDS | 40.0% | |
| ! | AGCCACTTAAAGTCTGAAGT+AGG | - | chr4_2:22172028-22172047 | None:intergenic | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | + | chr4_2:22172068-22172087 | Msa0594400:CDS | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | - | chr4_2:22172175-22172194 | None:intergenic | 40.0% | |
| ! | GAGGGATAATCATGCTGATT+TGG | + | chr4_2:22172228-22172247 | Msa0594400:CDS | 40.0% |
| !! | TCATGCTGATTTGGACTTCA+AGG | + | chr4_2:22172237-22172256 | Msa0594400:CDS | 40.0% |
| TTTGAGGAGGACACAACAAA+AGG | + | chr4_2:22172385-22172404 | Msa0594400:CDS | 40.0% | |
| TTGAGGAGGACACAACAAAA+GGG | + | chr4_2:22172386-22172405 | Msa0594400:CDS | 40.0% | |
| !! | GTTTTGGATGCAGAACTTGA+AGG | + | chr4_2:22172508-22172527 | Msa0594400:CDS | 40.0% |
| CATGTCGTATGTTTGAGAAC+CGG | + | chr4_2:22172617-22172636 | Msa0594400:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | + | chr4_2:22172618-22172637 | Msa0594400:CDS | 40.0% | |
| CATGTCGACATAAAAAACCC+CGG | - | chr4_2:22172639-22172658 | None:intergenic | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | - | chr4_2:22172763-22172782 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | - | chr4_2:22172788-22172807 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | - | chr4_2:22172812-22172831 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | + | chr4_2:22172897-22172916 | Msa0594400:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr4_2:22172980-22172999 | None:intergenic | 40.0% |
| TTTGCTTCTTCCGAGCTATA+AGG | - | chr4_2:22173128-22173147 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | - | chr4_2:22170632-22170651 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | + | chr4_2:22170674-22170693 | Msa0594400:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | - | chr4_2:22170683-22170702 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr4_2:22170686-22170705 | Msa0594400:CDS | 45.0% |
| CTCAAGTAGCGCAAATGCTT+TGG | - | chr4_2:22170794-22170813 | None:intergenic | 45.0% | |
| ! | GAAGTGATTGGTGAAGGTGT+TGG | + | chr4_2:22170896-22170915 | Msa0594400:CDS | 45.0% |
| AATGAAGCTCTCTCGAAACC+AGG | + | chr4_2:22171031-22171050 | Msa0594400:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr4_2:22171072-22171091 | None:intergenic | 45.0% | |
| GGCCTACTTCAGACTTTAAG+TGG | + | chr4_2:22172023-22172042 | Msa0594400:CDS | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr4_2:22172074-22172093 | Msa0594400:CDS | 45.0% |
| ! | GTGAGGTCTCATTTTACAGC+TGG | + | chr4_2:22172091-22172110 | Msa0594400:CDS | 45.0% |
| ATCCCAACAGTCAGCTTATG+CGG | + | chr4_2:22172287-22172306 | Msa0594400:CDS | 45.0% | |
| TTGAAGGAAACCTTTCCCCA+AGG | + | chr4_2:22172524-22172543 | Msa0594400:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | - | chr4_2:22172537-22172556 | None:intergenic | 45.0% | |
| GGGTTGTCACAATCGACATT+AGG | + | chr4_2:22172575-22172594 | Msa0594400:CDS | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | + | chr4_2:22172619-22172638 | Msa0594400:CDS | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | + | chr4_2:22172909-22172928 | Msa0594400:CDS | 45.0% | |
| CTGTCTGTGAACCATCTGTT+GGG | + | chr4_2:22173010-22173029 | Msa0594400:CDS | 45.0% | |
| !! | GTGATTGGTGAAGGTGTTGG+AGG | + | chr4_2:22170899-22170918 | Msa0594400:CDS | 50.0% |
| GACGACTCGTCAAAAGGAGA+TGG | + | chr4_2:22170970-22170989 | Msa0594400:CDS | 50.0% | |
| GACTCGTCAAAAGGAGATGG+TGG | + | chr4_2:22170973-22170992 | Msa0594400:CDS | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | + | chr4_2:22171791-22171810 | Msa0594400:CDS | 50.0% | |
| ACCAGCCTGGTCTGTGTATA+TGG | - | chr4_2:22171795-22171814 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | + | chr4_2:22171859-22171878 | Msa0594400:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | + | chr4_2:22171860-22171879 | Msa0594400:CDS | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | - | chr4_2:22172292-22172311 | None:intergenic | 50.0% | |
| CGCAAACACGTGTAGAAAGC+TGG | - | chr4_2:22172855-22172874 | None:intergenic | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | + | chr4_2:22172861-22172880 | Msa0594400:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | + | chr4_2:22172902-22172921 | Msa0594400:CDS | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | + | chr4_2:22173009-22173028 | Msa0594400:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr4_2:22173024-22173043 | None:intergenic | 50.0% |
| !! | TGGTGAAGGTGTTGGAGGCA+CGG | + | chr4_2:22170904-22170923 | Msa0594400:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr4_2:22170977-22170996 | Msa0594400:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | - | chr4_2:22171808-22171827 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | - | chr4_2:22172293-22172312 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | + | chr4_2:22172901-22172920 | Msa0594400:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | + | chr4_2:22172915-22172934 | Msa0594400:CDS | 55.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | + | chr4_2:22172864-22172883 | Msa0594400:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 22170275 | 22173328 | 22170275 | ID=Msa0594400;Name=Msa0594400 |
| chr4_2 | mRNA | 22170275 | 22173328 | 22170275 | ID=Msa0594400-mRNA-1;Parent=Msa0594400;Name=Msa0594400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|2|152|800 |
| chr4_2 | exon | 22170275 | 22171202 | 22170275 | ID=Msa0594400-mRNA-1:exon:6033;Parent=Msa0594400-mRNA-1 |
| chr4_2 | exon | 22171657 | 22173328 | 22171657 | ID=Msa0594400-mRNA-1:exon:6034;Parent=Msa0594400-mRNA-1 |
| chr4_2 | five_prime_UTR | 22170275 | 22170319 | 22170275 | ID=Msa0594400-mRNA-1:five_prime_utr;Parent=Msa0594400-mRNA-1 |
| chr4_2 | CDS | 22170320 | 22171202 | 22170320 | ID=Msa0594400-mRNA-1:cds;Parent=Msa0594400-mRNA-1 |
| chr4_2 | CDS | 22171657 | 22173176 | 22171657 | ID=Msa0594400-mRNA-1:cds;Parent=Msa0594400-mRNA-1 |
| chr4_2 | three_prime_UTR | 22173177 | 22173328 | 22173177 | ID=Msa0594400-mRNA-1:three_prime_utr;Parent=Msa0594400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
