Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594590 | XP_003597798.2 | 79.572 | 421 | 71 | 5 | 1 | 417 | 1 | 410 | 0.0 | 611 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594590 | sp|Q5KQI4|Y5814_ORYSJ | 43.704 | 270 | 136 | 7 | 16 | 280 | 18 | 276 | 2.41e-56 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594590 | G7IMD4 | 79.572 | 421 | 71 | 5 | 1 | 417 | 1 | 410 | 0.0 | 611 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0594590 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594590 | MtrunA17_Chr2g0332121 | 79.572 | 421 | 71 | 5 | 1 | 417 | 1 | 410 | 0.0 | 611 |
| Msa0594590 | MtrunA17_Chr4g0002411 | 88.387 | 155 | 18 | 0 | 82 | 236 | 18 | 172 | 3.41e-85 | 257 |
| Msa0594590 | MtrunA17_Chr3g0133791 | 40.870 | 230 | 128 | 2 | 9 | 237 | 5 | 227 | 2.34e-46 | 159 |
| Msa0594590 | MtrunA17_Chr8g0375001 | 49.600 | 125 | 57 | 1 | 116 | 234 | 14 | 138 | 6.44e-34 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594590 | AT5G58280.2 | 43.137 | 255 | 114 | 4 | 12 | 239 | 5 | 255 | 1.02e-55 | 186 |
| Msa0594590 | AT5G58280.3 | 43.750 | 256 | 110 | 5 | 12 | 239 | 5 | 254 | 4.44e-55 | 185 |
| Msa0594590 | AT5G58280.1 | 42.795 | 229 | 119 | 4 | 12 | 239 | 5 | 222 | 3.64e-49 | 168 |
| Msa0594590 | AT3G19184.1 | 39.683 | 252 | 126 | 3 | 12 | 255 | 8 | 241 | 3.70e-45 | 158 |
| Msa0594590 | AT3G19184.2 | 39.683 | 252 | 126 | 3 | 12 | 255 | 8 | 241 | 3.84e-45 | 158 |
| Msa0594590 | AT5G42700.1 | 39.130 | 230 | 119 | 5 | 10 | 234 | 7 | 220 | 2.13e-41 | 146 |
| Msa0594590 | AT5G42700.2 | 38.462 | 182 | 98 | 3 | 55 | 234 | 6 | 175 | 1.03e-32 | 122 |
Find 67 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACATTATTCTTTGATTT+TGG | 0.151715 | 4_2:+22620171 | None:intergenic |
| ATACGAAGGAACTGGGTTTC+TGG | 0.220802 | 4_2:+22620122 | None:intergenic |
| GGTTGAAGCAGCAAGATTTA+AGG | 0.234558 | 4_2:-22619143 | Msa0594590:intron |
| TTCCTTTGATTTAACAGTTT+TGG | 0.240573 | 4_2:+22617757 | None:intergenic |
| TCGAGATGTGCATCCTCTTT+TGG | 0.268576 | 4_2:+22617665 | None:intergenic |
| TTTAGATTCTTTGATTGCTT+TGG | 0.273612 | 4_2:+22617856 | None:intergenic |
| TGCGATTTCAGTCAATGTTT+TGG | 0.279142 | 4_2:+22620315 | None:intergenic |
| TTGGACTTTGGCTCAAGTTT+AGG | 0.284818 | 4_2:+22617776 | None:intergenic |
| AGCCGCTTCATACTTGTTAC+TGG | 0.292196 | 4_2:+22621248 | None:intergenic |
| TTAAATCAAAGGAAGCTTAT+AGG | 0.293006 | 4_2:-22617748 | Msa0594590:CDS |
| TTTACCTTGGATTTCTTTGC+TGG | 0.294171 | 4_2:+22620289 | None:intergenic |
| TCGAAGACTGCAAATTGATT+TGG | 0.297643 | 4_2:+22619527 | None:intergenic |
| GAAGATTCTTGTTAAAATAA+TGG | 0.308039 | 4_2:-22617546 | Msa0594590:CDS |
| GAAGGTGATGTATGTGAAAT+TGG | 0.313037 | 4_2:-22617587 | Msa0594590:CDS |
| ATCAAAGAATAATGTTGTTC+TGG | 0.322961 | 4_2:-22620166 | Msa0594590:CDS |
| GGCAACTTTGTAGCTGCCTC+TGG | 0.368043 | 4_2:+22617632 | None:intergenic |
| CATGTTCTTTCTTCTTGCCT+AGG | 0.381909 | 4_2:+22617516 | None:intergenic |
| ATTTGCATTGAAACATAAAC+TGG | 0.400811 | 4_2:-22619194 | Msa0594590:CDS |
| CAAGAAGAAAGAACATGTTC+AGG | 0.404310 | 4_2:-22617510 | Msa0594590:CDS |
| TCTTCACGATACGAAGGAAC+TGG | 0.423062 | 4_2:+22620114 | None:intergenic |
| CACTTATCAAGTCAATGGTT+TGG | 0.424323 | 4_2:-22619498 | Msa0594590:CDS |
| TTCATACTTGTTACTGGAAG+TGG | 0.425368 | 4_2:+22621254 | None:intergenic |
| TCAAGAAAGAAAGCGTGCTT+TGG | 0.426683 | 4_2:-22619566 | Msa0594590:CDS |
| AAAAGAAGAAAGCGATGCTT+TGG | 0.444588 | 4_2:-22617903 | Msa0594590:CDS |
| ACCTTCCACAGTTGCGGAAG+AGG | 0.453437 | 4_2:-22619756 | Msa0594590:CDS |
| TCCATCACTTATCAAGTCAA+TGG | 0.461188 | 4_2:-22619503 | Msa0594590:CDS |
| GTTTGGTCTCACGTTTATAG+AGG | 0.467915 | 4_2:-22619481 | Msa0594590:CDS |
| CAAGGTCAAGTTCATCATCA+TGG | 0.471764 | 4_2:-22619732 | Msa0594590:CDS |
| ACCTCTTCCGCAACTGTGGA+AGG | 0.475917 | 4_2:+22619755 | None:intergenic |
| TGTTCCTCGCAAAATCTCCT+TGG | 0.476704 | 4_2:+22619322 | None:intergenic |
| GGAAAACAAGAAGAGGTTTG+AGG | 0.478514 | 4_2:-22621208 | Msa0594590:intron |
| GTTCCTCGCAAAATCTCCTT+GGG | 0.483650 | 4_2:+22619323 | None:intergenic |
| AAAGAAAACTAGAATGCAAA+AGG | 0.490045 | 4_2:-22617810 | Msa0594590:CDS |
| AGAAGAAAGCGATGCTTTGG+TGG | 0.493049 | 4_2:-22617900 | Msa0594590:CDS |
| ACCATTGACTTGATAAGTGA+TGG | 0.497922 | 4_2:+22619502 | None:intergenic |
| ATTTGAAAATATAGATGAAG+AGG | 0.499410 | 4_2:-22617930 | Msa0594590:CDS |
| AAGGTCAAGTTCATCATCAT+GGG | 0.503820 | 4_2:-22619731 | Msa0594590:CDS |
| ATAATGTTGTTCTGGAACCT+AGG | 0.507456 | 4_2:-22620158 | Msa0594590:CDS |
| AGCAAGAAAACTGCGCTTAG+TGG | 0.510768 | 4_2:-22619229 | Msa0594590:CDS |
| AAACTGCGCTTAGTGGTGGC+TGG | 0.513224 | 4_2:-22619222 | Msa0594590:CDS |
| GTCCAAAACTGTTAAATCAA+AGG | 0.523876 | 4_2:-22617759 | Msa0594590:CDS |
| CACAGTTGCGGAAGAGGTCA+AGG | 0.544125 | 4_2:-22619750 | Msa0594590:CDS |
| AGCGATGCTTTGGTGGAAGA+AGG | 0.546631 | 4_2:-22617893 | Msa0594590:CDS |
| TACTGCAGTTGAGCCAAAAG+AGG | 0.549920 | 4_2:-22617678 | Msa0594590:CDS |
| AAAATAATGGAGGCTGACCT+AGG | 0.559343 | 4_2:-22617533 | Msa0594590:CDS |
| GCACAGACCTTCCACAGTTG+CGG | 0.564774 | 4_2:-22619762 | Msa0594590:CDS |
| GCGTGCTTTGGATGCTGCAG+AGG | 0.570639 | 4_2:-22619554 | Msa0594590:CDS |
| CTTGACCTCTTCCGCAACTG+TGG | 0.570829 | 4_2:+22619751 | None:intergenic |
| TTGAAACATAAACTGGATGA+TGG | 0.585314 | 4_2:-22619187 | Msa0594590:CDS |
| CTTCACGATACGAAGGAACT+GGG | 0.585948 | 4_2:+22620115 | None:intergenic |
| TCAGTTACGCTTACGTTGCG+AGG | 0.594424 | 4_2:-22619618 | Msa0594590:intron |
| GTGTGTAAGCAGATGGCAAA+CGG | 0.598841 | 4_2:-22621282 | None:intergenic |
| GACTTGAGGAAAACAAGAAG+AGG | 0.599382 | 4_2:-22621215 | Msa0594590:CDS |
| CAAGTTCATCATCATGGGGA+AGG | 0.599718 | 4_2:-22619726 | Msa0594590:CDS |
| GTTCATCATCATGGGGAAGG+TGG | 0.600596 | 4_2:-22619723 | Msa0594590:intron |
| AGTTCCTTCGTATCGTGAAG+AGG | 0.609998 | 4_2:-22620112 | Msa0594590:intron |
| AAGAAAACTGCGCTTAGTGG+TGG | 0.610549 | 4_2:-22619226 | Msa0594590:CDS |
| TTCCAGTAACAAGTATGAAG+CGG | 0.611515 | 4_2:-22621250 | Msa0594590:CDS |
| ATCTAAAACTGTGAAACCAA+AGG | 0.619114 | 4_2:-22617840 | Msa0594590:CDS |
| GATTCTTGTTAAAATAATGG+AGG | 0.623792 | 4_2:-22617543 | Msa0594590:CDS |
| AAGTCCAGCAAAGAAATCCA+AGG | 0.643226 | 4_2:-22620293 | Msa0594590:intron |
| CTGGCACGAGAAGAGCACCT+AGG | 0.654582 | 4_2:+22620141 | None:intergenic |
| AATTGGTGACTTACGTAATG+CGG | 0.677990 | 4_2:-22617570 | Msa0594590:CDS |
| GGCTAGAGAACAAAGACTTG+AGG | 0.682861 | 4_2:-22621229 | Msa0594590:CDS |
| CTTACCTCTTCACGATACGA+AGG | 0.683573 | 4_2:+22620108 | None:intergenic |
| AGGTCAAGTTCATCATCATG+GGG | 0.691621 | 4_2:-22619730 | Msa0594590:CDS |
| TCTCGAAACTGTGAAACCAG+AGG | 0.723018 | 4_2:-22617648 | Msa0594590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACTTACAATTTTTTAAAT+CGG | - | chr4_2:22618401-22618420 | Msa0594590:intron | 10.0% |
| !!! | ATATATTATCTTTATTTTGT+AGG | - | chr4_2:22619320-22619339 | Msa0594590:CDS | 10.0% |
| !!! | TATATTATCTTTATTTTGTA+GGG | - | chr4_2:22619321-22619340 | Msa0594590:CDS | 10.0% |
| !! | GAAAAATATAAATTTATTGA+AGG | - | chr4_2:22620397-22620416 | Msa0594590:intron | 10.0% |
| !!! | AAATTGAAATTTTATTGACA+TGG | - | chr4_2:22619018-22619037 | Msa0594590:intron | 15.0% |
| !! | GATATTAAAATATTGCAAAA+AGG | + | chr4_2:22619838-22619857 | None:intergenic | 15.0% |
| !! | AATTTATTGAAGGTTAATTT+AGG | - | chr4_2:22620407-22620426 | Msa0594590:intron | 15.0% |
| !! | CATATGAATATAATTATGTT+AGG | + | chr4_2:22620667-22620686 | None:intergenic | 15.0% |
| !! | CTAACATAATTATATTCATA+TGG | - | chr4_2:22620665-22620684 | Msa0594590:intron | 15.0% |
| !! | TTTCATGTTAATTGAAATCA+AGG | - | chr4_2:22617594-22617613 | Msa0594590:CDS | 20.0% |
| !!! | AAATCAAGGTATTTAAATAG+TGG | - | chr4_2:22617608-22617627 | Msa0594590:CDS | 20.0% |
| !!! | TAAGTCATGGTTTTAAATTA+TGG | - | chr4_2:22617853-22617872 | Msa0594590:CDS | 20.0% |
| !! | TTGCTTTATACTTTATATCA+TGG | - | chr4_2:22618040-22618059 | Msa0594590:intron | 20.0% |
| !! | AAAATCATAAAAAACCTTTG+AGG | - | chr4_2:22618150-22618169 | Msa0594590:intron | 20.0% |
| !! | AAAAAATTGTAAGTTTACCT+TGG | + | chr4_2:22618397-22618416 | None:intergenic | 20.0% |
| !!! | ACAACATTATTCTTTGATTT+TGG | + | chr4_2:22618502-22618521 | None:intergenic | 20.0% |
| !! | TATTTCACTTTATTACAGTT+AGG | - | chr4_2:22618886-22618905 | Msa0594590:intron | 20.0% |
| !!! | AAATTTTATTGACATGGTTA+TGG | - | chr4_2:22619024-22619043 | Msa0594590:intron | 20.0% |
| !!! | AATTTTATTGACATGGTTAT+GGG | - | chr4_2:22619025-22619044 | Msa0594590:intron | 20.0% |
| !! | TCCAAAAATTGACTATAAAA+TGG | - | chr4_2:22619374-22619393 | Msa0594590:intron | 20.0% |
| !!! | ACCATTTTATAGTCAATTTT+TGG | + | chr4_2:22619378-22619397 | None:intergenic | 20.0% |
| !!! | ACCATTTTAGAATTTGAAAA+GGG | + | chr4_2:22620059-22620078 | None:intergenic | 20.0% |
| !!! | TACCATTTTAGAATTTGAAA+AGG | + | chr4_2:22620060-22620079 | None:intergenic | 20.0% |
| !!! | ATTAGTTTGAGAAACTTAAA+TGG | + | chr4_2:22620311-22620330 | None:intergenic | 20.0% |
| !!! | ATAATTCTTTTTGTTTCTAC+TGG | + | chr4_2:22620613-22620632 | None:intergenic | 20.0% |
| !! | ATTTGAAAATATAGATGAAG+AGG | - | chr4_2:22620740-22620759 | Msa0594590:intron | 20.0% |
| !! | GAAGATTCTTGTTAAAATAA+TGG | - | chr4_2:22621124-22621143 | Msa0594590:intron | 20.0% |
| ! | TAAGATTATCTCAAACAAAG+TGG | + | chr4_2:22617494-22617513 | None:intergenic | 25.0% |
| !!! | AAAGTTTTAAGCCATCATTA+AGG | + | chr4_2:22617539-22617558 | None:intergenic | 25.0% |
| ! | TATATATGCATGTGTATCTA+AGG | - | chr4_2:22617569-22617588 | Msa0594590:CDS | 25.0% |
| ! | AAAGAAATAGTTGTCAAATG+TGG | - | chr4_2:22617653-22617672 | Msa0594590:CDS | 25.0% |
| ! | TTTATACATACTACTCAATC+TGG | + | chr4_2:22617763-22617782 | None:intergenic | 25.0% |
| ! | CTATATATACTGCTCAATAT+AGG | + | chr4_2:22617968-22617987 | None:intergenic | 25.0% |
| ! | TATATCATGGCTATAAATTG+TGG | - | chr4_2:22618053-22618072 | Msa0594590:intron | 25.0% |
| ! | ATCAAAGAATAATGTTGTTC+TGG | - | chr4_2:22618504-22618523 | Msa0594590:intron | 25.0% |
| ! | ATAGTGCAAAAATATCTACT+AGG | - | chr4_2:22618683-22618702 | Msa0594590:intron | 25.0% |
| ! | AATATCTACTAGGAATATGT+TGG | - | chr4_2:22618693-22618712 | Msa0594590:intron | 25.0% |
| !! | ATTCTCATACTTTTGTCTTA+GGG | + | chr4_2:22618732-22618751 | None:intergenic | 25.0% |
| !! | AATTCTCATACTTTTGTCTT+AGG | + | chr4_2:22618733-22618752 | None:intergenic | 25.0% |
| ! | ATCTTCAAATTCAAGAATCA+AGG | + | chr4_2:22618812-22618831 | None:intergenic | 25.0% |
| ! | ACATTAAAGAATGAACAACA+AGG | + | chr4_2:22619255-22619274 | None:intergenic | 25.0% |
| !!! | TGACTATAAAATGGTTTTAG+AGG | - | chr4_2:22619383-22619402 | Msa0594590:intron | 25.0% |
| ! | ATTTGCATTGAAACATAAAC+TGG | - | chr4_2:22619476-22619495 | Msa0594590:CDS | 25.0% |
| !! | TTTTCCTCAAAAACAAATCA+TGG | + | chr4_2:22619713-22619732 | None:intergenic | 25.0% |
| !!! | ATGATTTGTTTTTGAGGAAA+AGG | - | chr4_2:22619712-22619731 | Msa0594590:intron | 25.0% |
| ! | GGAAAAGGAATAATTTCAAA+TGG | - | chr4_2:22619727-22619746 | Msa0594590:CDS | 25.0% |
| ! | AAGAAGAAACTCAATATCAA+AGG | + | chr4_2:22619800-22619819 | None:intergenic | 25.0% |
| ! | TGACCAAATTAATTCTTACA+AGG | - | chr4_2:22619886-22619905 | Msa0594590:intron | 25.0% |
| !! | AAGCCTTGTAAGAATTAATT+TGG | + | chr4_2:22619892-22619911 | None:intergenic | 25.0% |
| !! | CAATTACTATATTTGGAACT+TGG | + | chr4_2:22619967-22619986 | None:intergenic | 25.0% |
| ! | CAGCTAACAATTACTATATT+TGG | + | chr4_2:22619974-22619993 | None:intergenic | 25.0% |
| ! | TATCTTCAAAAGTTATCTCA+TGG | + | chr4_2:22620015-22620034 | None:intergenic | 25.0% |
| !!! | ACCCTTTTCAAATTCTAAAA+TGG | - | chr4_2:22620055-22620074 | Msa0594590:intron | 25.0% |
| !! | CCTACTTATAACAACTATTT+TGG | + | chr4_2:22620203-22620222 | None:intergenic | 25.0% |
| ! | CCAAAATAGTTGTTATAAGT+AGG | - | chr4_2:22620200-22620219 | Msa0594590:intron | 25.0% |
| !!! | TACTTTTAGGGTTGAAATTA+CGG | - | chr4_2:22620259-22620278 | Msa0594590:intron | 25.0% |
| ! | AACAAAAAGAATTATATGCC+AGG | - | chr4_2:22620618-22620637 | Msa0594590:intron | 25.0% |
| ! | TTTAGATTCTTTGATTGCTT+TGG | + | chr4_2:22620817-22620836 | None:intergenic | 25.0% |
| ! | AAAGAAAACTAGAATGCAAA+AGG | - | chr4_2:22620860-22620879 | Msa0594590:intron | 25.0% |
| !!! | TTCCTTTGATTTAACAGTTT+TGG | + | chr4_2:22620916-22620935 | None:intergenic | 25.0% |
| ! | TTAAATCAAAGGAAGCTTAT+AGG | - | chr4_2:22620922-22620941 | Msa0594590:intron | 25.0% |
| ! | GATTCTTGTTAAAATAATGG+AGG | - | chr4_2:22621127-22621146 | Msa0594590:intron | 25.0% |
| TCATTTGTGTACCTTAATGA+TGG | - | chr4_2:22617525-22617544 | Msa0594590:CDS | 30.0% | |
| AGAAACATCAAAAACCTTGA+TGG | - | chr4_2:22617701-22617720 | Msa0594590:CDS | 30.0% | |
| !! | GTTTTAAATTATGGTCGAGT+CGG | - | chr4_2:22617862-22617881 | Msa0594590:CDS | 30.0% |
| ! | TTTTAAATTATGGTCGAGTC+GGG | - | chr4_2:22617863-22617882 | Msa0594590:CDS | 30.0% |
| TTAAGCGATCTTTGATATCA+TGG | - | chr4_2:22618079-22618098 | Msa0594590:intron | 30.0% | |
| ! | GGATAATAGTTGTGATAATG+AGG | - | chr4_2:22618187-22618206 | Msa0594590:intron | 30.0% |
| ! | GGTAGTTTGCATAAATCTAT+AGG | + | chr4_2:22618219-22618238 | None:intergenic | 30.0% |
| TAAATCCTTGAGAACAAAAG+GGG | + | chr4_2:22618319-22618338 | None:intergenic | 30.0% | |
| CTAAATCCTTGAGAACAAAA+GGG | + | chr4_2:22618320-22618339 | None:intergenic | 30.0% | |
| !! | TAAATCGGTTTTACTCTGTA+AGG | - | chr4_2:22618416-22618435 | Msa0594590:intron | 30.0% |
| GATATAGTTTGAACTTTGCA+AGG | + | chr4_2:22618596-22618615 | None:intergenic | 30.0% | |
| ACTATCATGTTGGAAAAGAA+TGG | + | chr4_2:22618838-22618857 | None:intergenic | 30.0% | |
| !!! | GCTTTTTTGATTTCATTCAG+TGG | + | chr4_2:22619078-22619097 | None:intergenic | 30.0% |
| !!! | AATGGTTTTAGAGGATGAAA+AGG | - | chr4_2:22619392-22619411 | Msa0594590:intron | 30.0% |
| !!! | ATGGTTTTAGAGGATGAAAA+GGG | - | chr4_2:22619393-22619412 | Msa0594590:intron | 30.0% |
| TTGAAACATAAACTGGATGA+TGG | - | chr4_2:22619483-22619502 | Msa0594590:CDS | 30.0% | |
| ! | TGATGCAGTAGTTTTTGAAT+TGG | - | chr4_2:22619506-22619525 | Msa0594590:CDS | 30.0% |
| !! | CTTTGAAGTTAAAAGAGAGT+TGG | + | chr4_2:22619576-22619595 | None:intergenic | 30.0% |
| !!! | CAACTCTCTTTTAACTTCAA+AGG | - | chr4_2:22619574-22619593 | Msa0594590:CDS | 30.0% |
| GATAATAACTGATATCAGCT+TGG | - | chr4_2:22619635-22619654 | Msa0594590:intron | 30.0% | |
| !!! | TTGTCCATGATTTGTTTTTG+AGG | - | chr4_2:22619706-22619725 | Msa0594590:intron | 30.0% |
| AGAACATCTAAGTTCATTAG+TGG | + | chr4_2:22619757-22619776 | None:intergenic | 30.0% | |
| TATAGTAATTGTTAGCTGTG+AGG | - | chr4_2:22619976-22619995 | Msa0594590:intron | 30.0% | |
| ATAGTAATTGTTAGCTGTGA+GGG | - | chr4_2:22619977-22619996 | Msa0594590:intron | 30.0% | |
| !! | ACTTTTGAAGATAGCTTTTG+TGG | - | chr4_2:22620022-22620041 | Msa0594590:intron | 30.0% |
| !! | CTTTTGAAGATAGCTTTTGT+GGG | - | chr4_2:22620023-22620042 | Msa0594590:intron | 30.0% |
| GACATATCACTAGTAAATGT+GGG | + | chr4_2:22620181-22620200 | None:intergenic | 30.0% | |
| !!! | AGCTTTTGGAGTTTACTTTT+AGG | - | chr4_2:22620246-22620265 | Msa0594590:intron | 30.0% |
| !!! | GCTTTTGGAGTTTACTTTTA+GGG | - | chr4_2:22620247-22620266 | Msa0594590:intron | 30.0% |
| ! | GGAAACTTGTTCTATAAGAA+AGG | - | chr4_2:22620368-22620387 | Msa0594590:intron | 30.0% |
| TTTGCAACCAAAAAACAAGT+GGG | + | chr4_2:22620536-22620555 | None:intergenic | 30.0% | |
| ATTTGCAACCAAAAAACAAG+TGG | + | chr4_2:22620537-22620556 | None:intergenic | 30.0% | |
| AAAAAGAATTATATGCCAGG+TGG | - | chr4_2:22620621-22620640 | Msa0594590:intron | 30.0% | |
| ! | ATCTAAAACTGTGAAACCAA+AGG | - | chr4_2:22620830-22620849 | Msa0594590:intron | 30.0% |
| !!! | GATTTAACAGTTTTGGACTT+TGG | + | chr4_2:22620909-22620928 | None:intergenic | 30.0% |
| GTCCAAAACTGTTAAATCAA+AGG | - | chr4_2:22620911-22620930 | Msa0594590:intron | 30.0% | |
| ! | TTTGCCTTCTTTTTCTTGTT+TGG | + | chr4_2:22621062-22621081 | None:intergenic | 30.0% |
| AAGAAAAAGAAGGCAAAAGA+AGG | - | chr4_2:22621065-22621084 | Msa0594590:intron | 30.0% | |
| ! | TTCATACTTGTTACTGGAAG+TGG | + | chr4_2:22617419-22617438 | None:intergenic | 35.0% |
| TTCCAGTAACAAGTATGAAG+CGG | - | chr4_2:22617420-22617439 | Msa0594590:CDS | 35.0% | |
| ! | ATAACCCGCAACAACATTTT+AGG | + | chr4_2:22617732-22617751 | None:intergenic | 35.0% |
| AGAATTCAAAACTTCCGTGT+TGG | - | chr4_2:22617828-22617847 | Msa0594590:CDS | 35.0% | |
| AACCATGACTTAAACCAACA+CGG | + | chr4_2:22617845-22617864 | None:intergenic | 35.0% | |
| CAACTATGTTGGCAATATCA+AGG | + | chr4_2:22617891-22617910 | None:intergenic | 35.0% | |
| TCACAACTATTATCCACATG+TGG | + | chr4_2:22618182-22618201 | None:intergenic | 35.0% | |
| ! | AATATCCCCTTTTGTTCTCA+AGG | - | chr4_2:22618311-22618330 | Msa0594590:intron | 35.0% |
| CCTAAATCCTTGAGAACAAA+AGG | + | chr4_2:22618321-22618340 | None:intergenic | 35.0% | |
| ! | CCTTTTGTTCTCAAGGATTT+AGG | - | chr4_2:22618318-22618337 | Msa0594590:intron | 35.0% |
| ! | TGCGATTTCAGTCAATGTTT+TGG | + | chr4_2:22618358-22618377 | None:intergenic | 35.0% |
| TTTACCTTGGATTTCTTTGC+TGG | + | chr4_2:22618384-22618403 | None:intergenic | 35.0% | |
| CGATTCTGCACAAAGAAATA+GGG | + | chr4_2:22618469-22618488 | None:intergenic | 35.0% | |
| ACGATTCTGCACAAAGAAAT+AGG | + | chr4_2:22618470-22618489 | None:intergenic | 35.0% | |
| !! | ATAATGTTGTTCTGGAACCT+AGG | - | chr4_2:22618512-22618531 | Msa0594590:intron | 35.0% |
| CTCAAGAAAGAGGAATATGT+TGG | - | chr4_2:22618652-22618671 | Msa0594590:intron | 35.0% | |
| !!! | ATTTAGCTCTAGAGTTTTGC+AGG | - | chr4_2:22618750-22618769 | Msa0594590:intron | 35.0% |
| AGAGAAAAATCACACAACAC+TGG | + | chr4_2:22618776-22618795 | None:intergenic | 35.0% | |
| AAGAATCAAGGATTTCTCGA+AGG | + | chr4_2:22618800-22618819 | None:intergenic | 35.0% | |
| !! | TTCCAACATGATAGTTTTGC+AGG | - | chr4_2:22618843-22618862 | Msa0594590:intron | 35.0% |
| TTCCTGCAAAACTATCATGT+TGG | + | chr4_2:22618848-22618867 | None:intergenic | 35.0% | |
| AAGGTCAAGTTCATCATCAT+GGG | - | chr4_2:22618939-22618958 | Msa0594590:intron | 35.0% | |
| TCGAAGACTGCAAATTGATT+TGG | + | chr4_2:22619146-22619165 | None:intergenic | 35.0% | |
| TCCATCACTTATCAAGTCAA+TGG | - | chr4_2:22619167-22619186 | Msa0594590:CDS | 35.0% | |
| !! | ACCATTGACTTGATAAGTGA+TGG | + | chr4_2:22619171-22619190 | None:intergenic | 35.0% |
| CACTTATCAAGTCAATGGTT+TGG | - | chr4_2:22619172-22619191 | Msa0594590:CDS | 35.0% | |
| ! | CTCACGTTTATAGAGGTTTT+TGG | - | chr4_2:22619196-22619215 | Msa0594590:CDS | 35.0% |
| !!! | CGTTTATAGAGGTTTTTGGT+TGG | - | chr4_2:22619200-22619219 | Msa0594590:CDS | 35.0% |
| !!! | TATAGAGGTTTTTGGTTGGT+AGG | - | chr4_2:22619204-22619223 | Msa0594590:CDS | 35.0% |
| AAAGAGAGTTGGATGAGAAT+TGG | + | chr4_2:22619565-22619584 | None:intergenic | 35.0% | |
| TGAGTTTCTTCTTGAGTTCA+AGG | - | chr4_2:22619807-22619826 | Msa0594590:intron | 35.0% | |
| TAGTAATTGTTAGCTGTGAG+GGG | - | chr4_2:22619978-22619997 | Msa0594590:intron | 35.0% | |
| GGACATATCACTAGTAAATG+TGG | + | chr4_2:22620182-22620201 | None:intergenic | 35.0% | |
| TATAGAACAAGTTTCCCTGA+GGG | + | chr4_2:22620364-22620383 | None:intergenic | 35.0% | |
| TTATAGAACAAGTTTCCCTG+AGG | + | chr4_2:22620365-22620384 | None:intergenic | 35.0% | |
| AAAAGAAGAAAGCGATGCTT+TGG | - | chr4_2:22620767-22620786 | Msa0594590:intron | 35.0% | |
| ! | GTTTTCTTTGTAGCTTCCTT+TGG | + | chr4_2:22620849-22620868 | None:intergenic | 35.0% |
| GTTGCCAAACAAGAAAAAGA+AGG | - | chr4_2:22621055-22621074 | Msa0594590:intron | 35.0% | |
| GAAGGTGATGTATGTGAAAT+TGG | - | chr4_2:22621083-22621102 | Msa0594590:intron | 35.0% | |
| ! | AATTGGTGACTTACGTAATG+CGG | - | chr4_2:22621100-22621119 | Msa0594590:intron | 35.0% |
| CAAGAAGAAAGAACATGTTC+AGG | - | chr4_2:22621160-22621179 | Msa0594590:intron | 35.0% | |
| ! | CCTCTCTTTCTGAAAAACTT+CGG | + | chr4_2:22621269-22621288 | None:intergenic | 35.0% |
| GACTTGAGGAAAACAAGAAG+AGG | - | chr4_2:22617455-22617474 | Msa0594590:CDS | 40.0% | |
| GGAAAACAAGAAGAGGTTTG+AGG | - | chr4_2:22617462-22617481 | Msa0594590:CDS | 40.0% | |
| ! | GTTGTCAAATGTGGTTGATG+TGG | - | chr4_2:22617662-22617681 | Msa0594590:CDS | 40.0% |
| !! | CATCAAAAACCTTGATGGTG+TGG | - | chr4_2:22617706-22617725 | Msa0594590:CDS | 40.0% |
| TGTGGCCTAAAATGTTGTTG+CGG | - | chr4_2:22617724-22617743 | Msa0594590:CDS | 40.0% | |
| !! | TTCCGTGTTGGTTTAAGTCA+TGG | - | chr4_2:22617840-22617859 | Msa0594590:CDS | 40.0% |
| GCCAACATAGTTGTCAACTT+TGG | - | chr4_2:22617898-22617917 | Msa0594590:CDS | 40.0% | |
| GCCAAAGTTGACAACTATGT+TGG | + | chr4_2:22617902-22617921 | None:intergenic | 40.0% | |
| AAGTCCAGCAAAGAAATCCA+AGG | - | chr4_2:22618377-22618396 | Msa0594590:intron | 40.0% | |
| CAAGGTCAAGTTCATCATCA+TGG | - | chr4_2:22618938-22618957 | Msa0594590:intron | 40.0% | |
| AGGTCAAGTTCATCATCATG+GGG | - | chr4_2:22618940-22618959 | Msa0594590:intron | 40.0% | |
| ! | TCAAGAAAGAAAGCGTGCTT+TGG | - | chr4_2:22619104-22619123 | Msa0594590:intron | 40.0% |
| GTTTGGTCTCACGTTTATAG+AGG | - | chr4_2:22619189-22619208 | Msa0594590:CDS | 40.0% | |
| !! | TTATTTTGTAGGGTCTCCCA+AGG | - | chr4_2:22619331-22619350 | Msa0594590:CDS | 40.0% |
| ! | TAAGCGCAGTTTTCTTGCTA+AGG | + | chr4_2:22619440-22619459 | None:intergenic | 40.0% |
| GGTTGAAGCAGCAAGATTTA+AGG | - | chr4_2:22619527-22619546 | Msa0594590:CDS | 40.0% | |
| ! | TCTATCACTATCGACTGATC+GGG | + | chr4_2:22619612-22619631 | None:intergenic | 40.0% |
| ! | GTCTATCACTATCGACTGAT+CGG | + | chr4_2:22619613-22619632 | None:intergenic | 40.0% |
| ATCAGTCGATAGTGATAGAC+AGG | - | chr4_2:22619613-22619632 | Msa0594590:CDS | 40.0% | |
| ! | TATCAGCTTGGTGAGAATGT+TGG | - | chr4_2:22619647-22619666 | Msa0594590:intron | 40.0% |
| ! | TTGGTGAGAATGTTGGTTGA+TGG | - | chr4_2:22619654-22619673 | Msa0594590:intron | 40.0% |
| !!! | CTAGCTTTTGAGGTTGAGTT+AGG | - | chr4_2:22619941-22619960 | Msa0594590:intron | 40.0% |
| ! | TATTTTCCAAATTGCCCCTC+AGG | - | chr4_2:22620346-22620365 | Msa0594590:intron | 40.0% |
| ! | ATTTTCCAAATTGCCCCTCA+GGG | - | chr4_2:22620347-22620366 | Msa0594590:intron | 40.0% |
| ATAGAACAAGTTTCCCTGAG+GGG | + | chr4_2:22620363-22620382 | None:intergenic | 40.0% | |
| !! | GCAATGTTCTCTAAAACTGC+AGG | - | chr4_2:22620505-22620524 | Msa0594590:intron | 40.0% |
| AACCAAAAAACAAGTGGGTC+TGG | + | chr4_2:22620531-22620550 | None:intergenic | 40.0% | |
| ATATCATCATTCGATCCACC+TGG | + | chr4_2:22620639-22620658 | None:intergenic | 40.0% | |
| ! | TTGGACTTTGGCTCAAGTTT+AGG | + | chr4_2:22620897-22620916 | None:intergenic | 40.0% |
| ! | AAAATAATGGAGGCTGACCT+AGG | - | chr4_2:22621137-22621156 | Msa0594590:intron | 40.0% |
| CATGTTCTTTCTTCTTGCCT+AGG | + | chr4_2:22621157-22621176 | None:intergenic | 40.0% | |
| AATCTGCTGCAGAAAAACCT+CGG | - | chr4_2:22621231-22621250 | Msa0594590:CDS | 40.0% | |
| !! | CCGAAGTTTTTCAGAAAGAG+AGG | - | chr4_2:22621266-22621285 | Msa0594590:CDS | 40.0% |
| ! | AGCCGCTTCATACTTGTTAC+TGG | + | chr4_2:22617425-22617444 | None:intergenic | 45.0% |
| GGCTAGAGAACAAAGACTTG+AGG | - | chr4_2:22617441-22617460 | Msa0594590:CDS | 45.0% | |
| ! | GGTTGATGTGGAATCAATCG+TGG | - | chr4_2:22617674-22617693 | Msa0594590:CDS | 45.0% |
| ! | CATTTTAGGCCACACCATCA+AGG | + | chr4_2:22617718-22617737 | None:intergenic | 45.0% |
| GTGGCCTAAAATGTTGTTGC+GGG | - | chr4_2:22617725-22617744 | Msa0594590:CDS | 45.0% | |
| !! | GTTGTCAACTTTGGCTTTCG+TGG | - | chr4_2:22617907-22617926 | Msa0594590:CDS | 45.0% |
| !! | TCAACTTTGGCTTTCGTGGT+CGG | - | chr4_2:22617911-22617930 | Msa0594590:CDS | 45.0% |
| AAAGACTACGCTAGTGGTGA+GGG | + | chr4_2:22618247-22618266 | None:intergenic | 45.0% | |
| AGACACAAAGACTACGCTAG+TGG | + | chr4_2:22618253-22618272 | None:intergenic | 45.0% | |
| ATACGAAGGAACTGGGTTTC+TGG | + | chr4_2:22618551-22618570 | None:intergenic | 45.0% | |
| CTTCACGATACGAAGGAACT+GGG | + | chr4_2:22618558-22618577 | None:intergenic | 45.0% | |
| TCTTCACGATACGAAGGAAC+TGG | + | chr4_2:22618559-22618578 | None:intergenic | 45.0% | |
| AGTTCCTTCGTATCGTGAAG+AGG | - | chr4_2:22618558-22618577 | Msa0594590:intron | 45.0% | |
| CTTACCTCTTCACGATACGA+AGG | + | chr4_2:22618565-22618584 | None:intergenic | 45.0% | |
| TCGTATCGTGAAGAGGTAAG+CGG | - | chr4_2:22618565-22618584 | Msa0594590:intron | 45.0% | |
| GTGACTCTGACTCAAGAAAG+AGG | - | chr4_2:22618642-22618661 | Msa0594590:intron | 45.0% | |
| CAAGTTCATCATCATGGGGA+AGG | - | chr4_2:22618944-22618963 | Msa0594590:intron | 45.0% | |
| GTTCCTCGCAAAATCTCCTT+GGG | + | chr4_2:22619350-22619369 | None:intergenic | 45.0% | |
| TGTTCCTCGCAAAATCTCCT+TGG | + | chr4_2:22619351-22619370 | None:intergenic | 45.0% | |
| AGCAAGAAAACTGCGCTTAG+TGG | - | chr4_2:22619441-22619460 | Msa0594590:intron | 45.0% | |
| AAGAAAACTGCGCTTAGTGG+TGG | - | chr4_2:22619444-22619463 | Msa0594590:intron | 45.0% | |
| GGTCATATCTCTAGCTGATG+TGG | + | chr4_2:22619871-22619890 | None:intergenic | 45.0% | |
| TCAACCTCAAAAGCTAGCAG+AGG | + | chr4_2:22619938-22619957 | None:intergenic | 45.0% | |
| TCACACTCAGTACGAAGGTT+GGG | + | chr4_2:22620141-22620160 | None:intergenic | 45.0% | |
| TTCACACTCAGTACGAAGGT+TGG | + | chr4_2:22620142-22620161 | None:intergenic | 45.0% | |
| ACCTTCGTACTGAGTGTGAA+AGG | - | chr4_2:22620142-22620161 | Msa0594590:CDS | 45.0% | |
| !!! | TCTTCGTGTGAGCTAGCTTT+TGG | - | chr4_2:22620232-22620251 | Msa0594590:intron | 45.0% |
| TCCTGACAATTCATTCGTGC+AGG | - | chr4_2:22620701-22620720 | Msa0594590:intron | 45.0% | |
| ACCTGCACGAATGAATTGTC+AGG | + | chr4_2:22620705-22620724 | None:intergenic | 45.0% | |
| AGAAGAAAGCGATGCTTTGG+TGG | - | chr4_2:22620770-22620789 | Msa0594590:intron | 45.0% | |
| TACTGCAGTTGAGCCAAAAG+AGG | - | chr4_2:22620992-22621011 | Msa0594590:intron | 45.0% | |
| ! | TCGAGATGTGCATCCTCTTT+TGG | + | chr4_2:22621008-22621027 | None:intergenic | 45.0% |
| TCTCGAAACTGTGAAACCAG+AGG | - | chr4_2:22621022-22621041 | Msa0594590:intron | 45.0% | |
| ACATGTGGCTGCAACCTCAA+AGG | + | chr4_2:22618167-22618186 | None:intergenic | 50.0% | |
| ! | TTTGAGGTTGCAGCCACATG+TGG | - | chr4_2:22618166-22618185 | Msa0594590:intron | 50.0% |
| CAAAGACTACGCTAGTGGTG+AGG | + | chr4_2:22618248-22618267 | None:intergenic | 50.0% | |
| GTTCATCATCATGGGGAAGG+TGG | - | chr4_2:22618947-22618966 | Msa0594590:intron | 50.0% | |
| TCAGTTACGCTTACGTTGCG+AGG | - | chr4_2:22619052-22619071 | Msa0594590:intron | 50.0% | |
| ! | TCTCCCAAGGAGATTTTGCG+AGG | - | chr4_2:22619344-22619363 | Msa0594590:intron | 50.0% |
| AGCAGAGGAGACAAGAGGTA+AGG | + | chr4_2:22619923-22619942 | None:intergenic | 50.0% | |
| AAGCTAGCAGAGGAGACAAG+AGG | + | chr4_2:22619928-22619947 | None:intergenic | 50.0% | |
| !!! | GTCTCCTCTGCTAGCTTTTG+AGG | - | chr4_2:22619931-22619950 | Msa0594590:intron | 50.0% |
| !! | TGGCGTGATAAGTGGTGGAT+CGG | + | chr4_2:22620107-22620126 | None:intergenic | 50.0% |
| TTTGCAGGTGGCGTGATAAG+TGG | + | chr4_2:22620115-22620134 | None:intergenic | 50.0% | |
| ACTTATCACGCCACCTGCAA+AGG | - | chr4_2:22620114-22620133 | Msa0594590:CDS | 50.0% | |
| CACACTCAGTACGAAGGTTG+GGG | + | chr4_2:22620140-22620159 | None:intergenic | 50.0% | |
| GCCTTTCACACTCAGTACGA+AGG | + | chr4_2:22620146-22620165 | None:intergenic | 50.0% | |
| AGTTTCCCTGAGGGGCAATT+TGG | + | chr4_2:22620355-22620374 | None:intergenic | 50.0% | |
| !!! | GGCCAGACCCACTTGTTTTT+TGG | - | chr4_2:22620526-22620545 | Msa0594590:intron | 50.0% |
| AGCGATGCTTTGGTGGAAGA+AGG | - | chr4_2:22620777-22620796 | Msa0594590:intron | 50.0% | |
| !!! | TTCGGAGCTCGTTTTTTCCG+AGG | + | chr4_2:22621251-22621270 | None:intergenic | 50.0% |
| GCACAGACCTTCCACAGTTG+CGG | - | chr4_2:22618908-22618927 | Msa0594590:intron | 55.0% | |
| ACCTTCCACAGTTGCGGAAG+AGG | - | chr4_2:22618914-22618933 | Msa0594590:intron | 55.0% | |
| ACCTCTTCCGCAACTGTGGA+AGG | + | chr4_2:22618918-22618937 | None:intergenic | 55.0% | |
| CTTGACCTCTTCCGCAACTG+TGG | + | chr4_2:22618922-22618941 | None:intergenic | 55.0% | |
| CACAGTTGCGGAAGAGGTCA+AGG | - | chr4_2:22618920-22618939 | Msa0594590:intron | 55.0% | |
| AAACTGCGCTTAGTGGTGGC+TGG | - | chr4_2:22619448-22619467 | Msa0594590:intron | 55.0% | |
| GGCAACTTTGTAGCTGCCTC+TGG | + | chr4_2:22621041-22621060 | None:intergenic | 55.0% | |
| ACGCTAGTGGTGAGGGACAC+AGG | + | chr4_2:22618240-22618259 | None:intergenic | 60.0% | |
| !! | CTGGCACGAGAAGAGCACCT+AGG | + | chr4_2:22618532-22618551 | None:intergenic | 60.0% |
| ! | GCGTGCTTTGGATGCTGCAG+AGG | - | chr4_2:22619116-22619135 | Msa0594590:intron | 60.0% |
| GCAGGTGGCGTGATAAGTGG+TGG | + | chr4_2:22620112-22620131 | None:intergenic | 60.0% | |
| AAGGTTGGGGCCTTTGCAGG+TGG | + | chr4_2:22620127-22620146 | None:intergenic | 60.0% | |
| ACGAAGGTTGGGGCCTTTGC+AGG | + | chr4_2:22620130-22620149 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 22617400 | 22621292 | 22617400 | ID=Msa0594590;Name=Msa0594590 |
| chr4_2 | mRNA | 22617400 | 22621292 | 22617400 | ID=Msa0594590-mRNA-1;Parent=Msa0594590;Name=Msa0594590-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|7|0|417 |
| chr4_2 | exon | 22621209 | 22621292 | 22621209 | ID=Msa0594590-mRNA-1:exon:6153;Parent=Msa0594590-mRNA-1 |
| chr4_2 | exon | 22620294 | 22620359 | 22620294 | ID=Msa0594590-mRNA-1:exon:6152;Parent=Msa0594590-mRNA-1 |
| chr4_2 | exon | 22620113 | 22620208 | 22620113 | ID=Msa0594590-mRNA-1:exon:6151;Parent=Msa0594590-mRNA-1 |
| chr4_2 | exon | 22619724 | 22619788 | 22619724 | ID=Msa0594590-mRNA-1:exon:6150;Parent=Msa0594590-mRNA-1 |
| chr4_2 | exon | 22619471 | 22619636 | 22619471 | ID=Msa0594590-mRNA-1:exon:6149;Parent=Msa0594590-mRNA-1 |
| chr4_2 | exon | 22619144 | 22619350 | 22619144 | ID=Msa0594590-mRNA-1:exon:6148;Parent=Msa0594590-mRNA-1 |
| chr4_2 | exon | 22617400 | 22617969 | 22617400 | ID=Msa0594590-mRNA-1:exon:6147;Parent=Msa0594590-mRNA-1 |
| chr4_2 | CDS | 22621209 | 22621292 | 22621209 | ID=Msa0594590-mRNA-1:cds;Parent=Msa0594590-mRNA-1 |
| chr4_2 | CDS | 22620294 | 22620359 | 22620294 | ID=Msa0594590-mRNA-1:cds;Parent=Msa0594590-mRNA-1 |
| chr4_2 | CDS | 22620113 | 22620208 | 22620113 | ID=Msa0594590-mRNA-1:cds;Parent=Msa0594590-mRNA-1 |
| chr4_2 | CDS | 22619724 | 22619788 | 22619724 | ID=Msa0594590-mRNA-1:cds;Parent=Msa0594590-mRNA-1 |
| chr4_2 | CDS | 22619471 | 22619636 | 22619471 | ID=Msa0594590-mRNA-1:cds;Parent=Msa0594590-mRNA-1 |
| chr4_2 | CDS | 22619144 | 22619350 | 22619144 | ID=Msa0594590-mRNA-1:cds;Parent=Msa0594590-mRNA-1 |
| chr4_2 | CDS | 22617400 | 22617969 | 22617400 | ID=Msa0594590-mRNA-1:cds;Parent=Msa0594590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
