AlfalfaGEDB | Msa0596440

M. sativa cultivar zhongmu-4 / Msa0596440

KEGG: K08789
GO: GO:0000902 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0035556 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0596440	XP_013455325.2	93.361	1205	37	4	1	1201	1	1166	0.0	2308

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0596440	sp\|Q9LE81\|IRE_ARATH	57.634	1251	391	26	1	1200	1	1163	0.0	1303

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0596440	MtrunA17_Chr4g0018201	93.361	1205	37	4	1	1201	1	1166	0.0	2308
Msa0596440	MtrunA17_Chr5g0428981	93.041	1207	37	4	1	1199	1	1168	0.0	2301
Msa0596440	MtrunA17_Chr6g0478601	62.202	545	161	7	647	1184	1	507	0.0	640
Msa0596440	MtrunA17_Chr6g0478591	44.950	505	231	9	172	634	257	756	8.24e-121	393
Msa0596440	MtrunA17_Chr1g0167351	38.129	417	198	10	705	1099	49	427	5.56e-77	265
Msa0596440	MtrunA17_Chr1g0187581	36.986	365	179	7	748	1099	107	433	9.21e-73	252
Msa0596440	MtrunA17_Chr1g0183651	37.466	363	171	6	752	1099	114	435	2.95e-72	251
Msa0596440	MtrunA17_Chr1g0167311	35.392	421	207	9	705	1101	54	433	5.37e-71	247
Msa0596440	MtrunA17_Chr7g0261491	34.249	473	224	12	748	1200	110	515	7.30e-71	248
Msa0596440	MtrunA17_Chr2g0299781	36.340	388	181	7	748	1110	103	449	3.49e-70	244

Showing 1 to 10 of 351 entries

Previous1 2 3 4 5…36Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0596440	AT5G62310.1	57.634	1251	391	26	1	1200	1	1163	0.0	1303
Msa0596440	AT3G17850.1	51.308	1070	415	18	172	1190	269	1283	0.0	996
Msa0596440	AT1G48490.3	47.683	1187	496	22	83	1200	102	1232	0.0	967
Msa0596440	AT1G48490.2	47.683	1187	496	22	83	1200	102	1232	0.0	967
Msa0596440	AT1G48490.1	47.683	1187	496	22	83	1200	102	1232	0.0	967
Msa0596440	AT1G48490.4	47.285	1197	487	22	83	1200	102	1233	0.0	967
Msa0596440	AT1G45160.2	47.368	722	281	17	487	1184	398	1044	0.0	571
Msa0596440	AT1G45160.2	42.446	139	78	1	197	333	134	272	2.92e-23	107
Msa0596440	AT1G45160.1	47.307	687	266	15	487	1149	398	1012	2.80e-176	548
Msa0596440	AT1G45160.1	42.446	139	78	1	197	333	134	272	3.83e-23	107

Showing 1 to 10 of 503 entries

Previous1 2 3 4 5…51Next

Find 224 sgRNAs with CRISPR-Local

Find 513 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCATTAGTGAAAGATG+AGG	0.587161	4_2:+26710482	None:intergenic
AAAACCTGATCATGGTGCAA+AGG	0.587224	4_2:-26712551	Msa0596440:CDS
AAAAGAGGATGCACTTATTG+TGG	0.533775	4_2:-26712021	Msa0596440:CDS
AAAAGTACTGATTCGACTCC+TGG	0.485952	4_2:-26713111	Msa0596440:CDS
AAACCATTAGTGAAAGATGA+GGG	0.596115	4_2:+26710483	None:intergenic
AAACGTCAAGAAATACCGGT+GGG	0.628025	4_2:-26713447	Msa0596440:CDS
AAAGAACAAGATCACATTCT+TGG	0.292006	4_2:-26713342	Msa0596440:CDS
AAATGCAGTTGAAGGTATTT+TGG	0.216683	4_2:-26711102	Msa0596440:CDS
AACATATCACCTCCAGTATG+AGG	0.533916	4_2:+26714668	None:intergenic
AACCTCGACATGTTTCAAAA+AGG	0.315844	4_2:-26710440	Msa0596440:CDS

Showing 1 to 10 of 224 entries

Previous1 2 3 4 5…23Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GATGAAGAATAAGAACATTC+AGG	+	chr4_2:26707316-26707335	None:intergenic	30.0%
ATGCCTCAAATCATTTATGT+TGG	-	chr4_2:26707747-26707766	Msa0596440:intron	30.0%
TGCCTCAAATCATTTATGTT+GGG	-	chr4_2:26707748-26707767	Msa0596440:intron	30.0%
TTTCATTGTTGTGCTTCATT+AGG	-	chr4_2:26707929-26707948	Msa0596440:intron	30.0%
TTCATTGTTGTGCTTCATTA+GGG	-	chr4_2:26707930-26707949	Msa0596440:intron	30.0%
TTGAATGTAATCACATGTGT+TGG	+	chr4_2:26708252-26708271	None:intergenic	30.0%
TTCAATAGTTGGAGAAATGT+AGG	-	chr4_2:26708399-26708418	Msa0596440:intron	30.0%
GTGGTAAGAAAAAGAAAAAC+CGG	-	chr4_2:26708522-26708541	Msa0596440:intron	30.0%
TGAATTGTTACAGGAAATCA+TGG	-	chr4_2:26708980-26708999	Msa0596440:intron	30.0%
GTTCTCTTGAAAAAATACCT+GGG	-	chr4_2:26709081-26709100	Msa0596440:intron	30.0%

Showing 1 to 10 of 513 entries

Previous1 2 3 4 5…52Next

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	26707070	26715623	26707070	ID=Msa0596440;Name=Msa0596440
chr4_2	mRNA	26707070	26715623	26707070	ID=Msa0596440-mRNA-1;Parent=Msa0596440;Name=Msa0596440-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0\|0\|0.94\|1\|1\|18\|0\|1201
chr4_2	exon	26715197	26715623	26715197	ID=Msa0596440-mRNA-1:exon:7126;Parent=Msa0596440-mRNA-1
chr4_2	exon	26714678	26714742	26714678	ID=Msa0596440-mRNA-1:exon:7125;Parent=Msa0596440-mRNA-1
chr4_2	exon	26714065	26714238	26714065	ID=Msa0596440-mRNA-1:exon:7124;Parent=Msa0596440-mRNA-1
chr4_2	exon	26712429	26713700	26712429	ID=Msa0596440-mRNA-1:exon:7123;Parent=Msa0596440-mRNA-1
chr4_2	exon	26711987	26712159	26711987	ID=Msa0596440-mRNA-1:exon:7122;Parent=Msa0596440-mRNA-1
chr4_2	exon	26711408	26711657	26711408	ID=Msa0596440-mRNA-1:exon:7121;Parent=Msa0596440-mRNA-1
chr4_2	exon	26711061	26711153	26711061	ID=Msa0596440-mRNA-1:exon:7120;Parent=Msa0596440-mRNA-1
chr4_2	exon	26710827	26710967	26710827	ID=Msa0596440-mRNA-1:exon:7119;Parent=Msa0596440-mRNA-1
chr4_2	exon	26710648	26710740	26710648	ID=Msa0596440-mRNA-1:exon:7118;Parent=Msa0596440-mRNA-1
chr4_2	exon	26710364	26710565	26710364	ID=Msa0596440-mRNA-1:exon:7117;Parent=Msa0596440-mRNA-1
chr4_2	exon	26710176	26710261	26710176	ID=Msa0596440-mRNA-1:exon:7116;Parent=Msa0596440-mRNA-1
chr4_2	exon	26709010	26709098	26709010	ID=Msa0596440-mRNA-1:exon:7115;Parent=Msa0596440-mRNA-1
chr4_2	exon	26708614	26708698	26708614	ID=Msa0596440-mRNA-1:exon:7114;Parent=Msa0596440-mRNA-1
chr4_2	exon	26708333	26708407	26708333	ID=Msa0596440-mRNA-1:exon:7113;Parent=Msa0596440-mRNA-1
chr4_2	exon	26708187	26708243	26708187	ID=Msa0596440-mRNA-1:exon:7112;Parent=Msa0596440-mRNA-1
chr4_2	exon	26707938	26708099	26707938	ID=Msa0596440-mRNA-1:exon:7111;Parent=Msa0596440-mRNA-1
chr4_2	exon	26707549	26707629	26707549	ID=Msa0596440-mRNA-1:exon:7110;Parent=Msa0596440-mRNA-1
chr4_2	exon	26707070	26707150	26707070	ID=Msa0596440-mRNA-1:exon:7109;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26715197	26715623	26715197	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26714678	26714742	26714678	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26714065	26714238	26714065	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26712429	26713700	26712429	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26711987	26712159	26711987	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26711408	26711657	26711408	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26711061	26711153	26711061	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26710827	26710967	26710827	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26710648	26710740	26710648	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26710364	26710565	26710364	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26710176	26710261	26710176	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26709010	26709098	26709010	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26708614	26708698	26708614	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26708333	26708407	26708333	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26708187	26708243	26708187	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26707938	26708099	26707938	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26707549	26707629	26707549	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1
chr4_2	CDS	26707070	26707150	26707070	ID=Msa0596440-mRNA-1:cds;Parent=Msa0596440-mRNA-1

Gene Sequence

>Msa0596440

ATGTCTTCCAACCCTCCCCCACCGGAAAATGATCCACCACCAGCGACATCGTCGCCGGTATCCGCTAAATCCAGAACTCTTCAGAAATTCCCTCCCATTGTAAACCGCCGCACCGCGACATTATCATCGAATAATGAAGACGACGAATGCGAAGAAGAGAATAACAAGAACAAGAATCATGATAATGAGGAGGAAGAAGAAGATGAAGAAGACGTTCTTGTACCTGAACGTGAATTCGAACGTCCTGAATGTTCTTATTCTTCATCCATTTTGCAAGCTTCGTCGTTAGGTCTTAATCAAATTCGAACGCGATTCTCTTCGCCTCTTCGTCATTCTTCTTCTGCTGGTGCTCCTTCTTTCCCTACAAAAGATGTTGTCAACAATGTCGCTAAATTTAGATCTAGAGTTTCATATCCAAAAGACCTAGGGGAAAACGTTCATTGGAATCAATCCAAATCGTTGAAAGCTCGTTCACAACTCCTCATACTGGAGGGAAATCATGCAGCTTATGCCAAAGATTTTCAATCCCCACGTTATCAGGAAATTCTTCGGCTTACAAGTGGTAAGAAAAAGAAAAACCGGCCTGATATTAAAAGCTTTTCCCATGAACTTAACTCCAAAGGAGTTAGGCCTTTTCCAGTCTGGAAACATCGTGCCTTTGGGCAGGAAATCATGGTGGAGATTAGAGCTAAGTTTGAAAAACTAAAGGAAGAAGTTGATTCTGATTTGGGTGGTTTTGCTGGTGATTTGGTGGGTTCTCTTGAAAAAATACCTGGGTCTCATCCTGAATGGAAAGAGGGGTTGGAAGATTTGTTGGTTGTTGCTCGACAATGTGCAAAGATGACAGCGGCTGAGTTTTGGATCAAATGTGAAACTATTGTTCAAAAACTAGATGATAAACGTCAAGAAATACCGGTGGGGATCCTCAAGCAAGCACATACGCGACTGTTGTTTATTCTCTCTAGGTGCACTCGTCTAGTGCAATTCCAGAAGGAAACTGTTAAAGAACAAGATCACATTCTTGGTCTTCACCAACTCAGCGATCTTGGAGTATATTCCGAGCAAATTATGAAGGCTGAAGAGAATTGCAGTGTTCCACCTAGTGACCATGAGATGGCTGAGAAGCTGTTAAAAAAGTCACATGGGAAAGAGCAAGACAAACCGATAACAAAACAAAGTCAAGCTGATCAACATGCAAGTGTTGTGATTGATAATGTGGAAGTTACTACAGCTAAAAGTACTGATTCGACTCCTGGCAGCAGCTATAAGATGGCTTCTTGGAGAAAGCTTCCATCTGCTGCGGAGAAAAATCGCGTAGGTCAAGATGCAGTAAAAGATGAAAATGCTGAAAACTGGGATACTTTGTCATGTCACCCTGATCAACATTCACAGCCGCCATCTAGAACGCGGAGGCCTTCTTGGGGATATTGGGGAGATCAGCAAAATCTATTACATGATGATTCAATGATCTGCAGGATTTGTGAGGTTGAAATACCAATATTACATGTGGAGGAGCATTCTCGAATATGTACAATTGCTGATAAATGTGATTTGAAAGGCTTAACTGTAAATGAACGGCTTGAAAGAGTTGCCGAAACAATTGAAATGTTACTTGATTCCTTGACACCAACATCAAGTTTGCATGAAGAGTTCAATGAGTTATCTCTAGAAAGAAATAACATGTCATCTAGATGCTCTGAAGATATGCTTGACCTTGCTCCTGAACATGACAATACTTTTGTTGCGGATGATCTAAGCCTTTCGCGGGAAATATCATGCGAGGCTCATAGCTTAAAACCTGATCATGGTGCAAAGGTATCTTCTCCTGAAAGCTTGACACCGCGATCACCGTTGATTACACCCAGAACAAGTCAGATAGAAATGTTACTAAGTGTAAGTGGAAGAAGACCAATATCTGAACTTGAGAGTTATGACCAGATAAACAAGCTAGTTGAAATTGCCCGTGCTGTTGCAAATGCGAACAGCTGTGACGAAAGTGCTTTCCAGTATATCGTTGATTGCGTGGAAGACCTGAGATGTGTAATTCAGAATAGAAAAGAGGATGCACTTATTGTGGATACTTTCGGTCGACGAATAGAGAAACTTTTGCAAGAGAAATATTTAACTCTTTGTGGGCAAATACAAGATGAAAGGGGAGAATCATCAAATAGCCTGGCTGATGAAGAGAGTTCAGTGGACGATGATACAATCCGTAGCCTTCGTGCTAGCCCAATTAATGGTTTTTCTAAGGACAGAACCTCTATTGAAGATTTTGAAATAATAAAACCAATAAGCAGAGGTGCGTTTGGACGAGTTTTTCTTGCCCAAAAAAGATCAACTGGTGATTTATTTGCTATTAAGGTTCTGAAAAAGGCAGATATGATTCGTAAAAATGCAGTTGAAGGTATTTTGGCTGAGCGAGACATTCTTATATCAGTTCGAAACCCTTTTGTGGTCCGATTTTACTATTCTTTCACATGTAAAGAAAATCTGTATTTGGTTATGGAGTACTTAAATGGTGGAGATCTCTATTCTATGTTGAGAAACTTAGGTTGCTTAGATGAAGATATGGCTCGTGTATATATTGCAGAAGTTGTTCTTGCGTTGGAGTATTTGCATTCGCGAAGTATAGTTCACAGAGACTTAAAGCCAGATAACTTACTGATCGGACAAGATGGTCATATTAAGTTGACAGACTTTGGACTCTCAAAAGTTGGTCTCATCAACAGCACGGAGGATTTATCAGCACCCTCATCTTTCACTAATGGTTTTTTAGTCGATGATGAACCAAAACCTCGACATGTTTCAAAAAGGGAGGCGCGTCAACAACAATCAATAGTTGGCACTCCAGATTATTTGGCACCCGAAATACTTTTGGGCATGGGACATGGTACAACTGCAGATTGGTGGTCCGTGGGTGTCATACTTTACGAGCTTCTTGTGGGTATTCCACCTTTTAATGCAGATCATCCACAGCAAATTTTTGATAACATAATTAACAGAGACATACAATGGCCAAAGTATCCTGAGGAGATCAGCTTTGAAGCATACGATTTGATGAATAATATCTTGTTGAACATTTGTCCTCTACCTGTAAAAGAAGTCACTGTAAAGATGTGGTTAGCAGTGGCTTACGATTTAACACTATTTCTGACAGTGAAGTTCTCTTTCAGATTACTGATCGAAAACCCAGTCCAAAGATTAGGTGTAACAGGAGCTACAGAAGTTAAACGCCATGCTTTCTTCAAGGATATTAATTGGGACACGCTAGCAAGGCAGAAGGCTATGTTCATACCATCGGCTGAAGCTCATGATACAAGTTATTTCATGAGCCGCTACATTTGGAATGTAGAGGATGATGAACATTGTGCTGGAGGTAGTGATTTTTATGACCATTCTGAAACATCCAGCAGTGGTTCAGGAAGTGATTCATTAGATGAAGATGGCGATGAATGCGCTAGTTTAACAGAATTCAGCAATTCAGCTCTTGGCGTGCAGTACTCGTTTAGTAACTTCTCGTTTAAGAATATAACTCAGCTAGCGTCTATCAATATGATGCATATCTCCAAAGAATCACCGGACGACTCCAACCCATCTGTGTCATGA

Protein sequence

>Msa0596440

MSSNPPPPENDPPPATSSPVSAKSRTLQKFPPIVNRRTATLSSNNEDDECEEENNKNKNHDNEEEEEDEEDVLVPEREFERPECSYSSSILQASSLGLNQIRTRFSSPLRHSSSAGAPSFPTKDVVNNVAKFRSRVSYPKDLGENVHWNQSKSLKARSQLLILEGNHAAYAKDFQSPRYQEILRLTSGKKKKNRPDIKSFSHELNSKGVRPFPVWKHRAFGQEIMVEIRAKFEKLKEEVDSDLGGFAGDLVGSLEKIPGSHPEWKEGLEDLLVVARQCAKMTAAEFWIKCETIVQKLDDKRQEIPVGILKQAHTRLLFILSRCTRLVQFQKETVKEQDHILGLHQLSDLGVYSEQIMKAEENCSVPPSDHEMAEKLLKKSHGKEQDKPITKQSQADQHASVVIDNVEVTTAKSTDSTPGSSYKMASWRKLPSAAEKNRVGQDAVKDENAENWDTLSCHPDQHSQPPSRTRRPSWGYWGDQQNLLHDDSMICRICEVEIPILHVEEHSRICTIADKCDLKGLTVNERLERVAETIEMLLDSLTPTSSLHEEFNELSLERNNMSSRCSEDMLDLAPEHDNTFVADDLSLSREISCEAHSLKPDHGAKVSSPESLTPRSPLITPRTSQIEMLLSVSGRRPISELESYDQINKLVEIARAVANANSCDESAFQYIVDCVEDLRCVIQNRKEDALIVDTFGRRIEKLLQEKYLTLCGQIQDERGESSNSLADEESSVDDDTIRSLRASPINGFSKDRTSIEDFEIIKPISRGAFGRVFLAQKRSTGDLFAIKVLKKADMIRKNAVEGILAERDILISVRNPFVVRFYYSFTCKENLYLVMEYLNGGDLYSMLRNLGCLDEDMARVYIAEVVLALEYLHSRSIVHRDLKPDNLLIGQDGHIKLTDFGLSKVGLINSTEDLSAPSSFTNGFLVDDEPKPRHVSKREARQQQSIVGTPDYLAPEILLGMGHGTTADWWSVGVILYELLVGIPPFNADHPQQIFDNIINRDIQWPKYPEEISFEAYDLMNNILLNICPLPVKEVTVKMWLAVAYDLTLFLTVKFSFRLLIENPVQRLGVTGATEVKRHAFFKDINWDTLARQKAMFIPSAEAHDTSYFMSRYIWNVEDDEHCAGGSDFYDHSETSSSGSGSDSLDEDGDECASLTEFSNSALGVQYSFSNFSFKNITQLASINMMHISKESPDDSNPSVS*