Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0596490 | TKY57837.1 | 45.930 | 172 | 76 | 4 | 3 | 158 | 8 | 178 | 1.16e-40 | 149 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0596490 | sp|Q9C8W9|NAC30_ARATH | 30.189 | 159 | 80 | 6 | 4 | 139 | 9 | 159 | 2.30e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0596490 | TF | NAC |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0596490 | MtrunA17_Chr1g0200561 | 27.869 | 183 | 101 | 6 | 4 | 163 | 19 | 193 | 1.00e-12 | 65.9 |
Msa0596490 | MtrunA17_Chr5g0398971 | 29.936 | 157 | 79 | 6 | 4 | 136 | 7 | 156 | 1.39e-12 | 65.1 |
Msa0596490 | MtrunA17_Chr4g0056541 | 30.769 | 156 | 77 | 6 | 4 | 136 | 7 | 154 | 5.28e-12 | 63.5 |
Msa0596490 | MtrunA17_Chr5g0405211 | 29.936 | 157 | 77 | 7 | 4 | 136 | 8 | 155 | 5.90e-12 | 63.5 |
Msa0596490 | MtrunA17_Chr4g0017921 | 30.508 | 177 | 89 | 10 | 4 | 156 | 8 | 174 | 1.05e-11 | 62.8 |
Msa0596490 | MtrunA17_Chr1g0147421 | 31.126 | 151 | 87 | 5 | 2 | 136 | 25 | 174 | 1.17e-11 | 62.8 |
Msa0596490 | MtrunA17_Chr4g0018391 | 31.410 | 156 | 76 | 7 | 4 | 136 | 7 | 154 | 1.40e-11 | 62.4 |
Msa0596490 | MtrunA17_Chr1g0183741 | 33.113 | 151 | 77 | 9 | 4 | 136 | 10 | 154 | 3.60e-11 | 60.8 |
Msa0596490 | MtrunA17_Chr3g0109821 | 30.323 | 155 | 81 | 7 | 4 | 136 | 6 | 155 | 4.10e-11 | 61.2 |
Msa0596490 | MtrunA17_Chr7g0261411 | 33.557 | 149 | 79 | 8 | 4 | 136 | 10 | 154 | 4.46e-11 | 60.5 |
Msa0596490 | MtrunA17_Chr3g0128151 | 28.729 | 181 | 100 | 10 | 1 | 160 | 19 | 191 | 6.62e-11 | 60.8 |
Msa0596490 | MtrunA17_Chr8g0384351 | 28.571 | 168 | 96 | 6 | 4 | 162 | 10 | 162 | 6.98e-11 | 58.9 |
Msa0596490 | MtrunA17_Chr8g0345671 | 32.468 | 154 | 75 | 8 | 4 | 136 | 11 | 156 | 7.69e-11 | 60.5 |
Msa0596490 | MtrunA17_Chr7g0263931 | 31.013 | 158 | 77 | 8 | 4 | 135 | 11 | 162 | 8.84e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0596490 | AT2G27300.1 | 31.293 | 147 | 79 | 5 | 4 | 135 | 14 | 153 | 1.43e-13 | 68.6 |
Msa0596490 | AT3G17730.1 | 31.613 | 155 | 78 | 8 | 4 | 136 | 6 | 154 | 2.31e-13 | 67.0 |
Msa0596490 | AT1G71930.2 | 30.189 | 159 | 80 | 6 | 4 | 139 | 9 | 159 | 2.34e-12 | 65.1 |
Msa0596490 | AT1G71930.1 | 30.189 | 159 | 80 | 6 | 4 | 139 | 9 | 159 | 2.34e-12 | 65.1 |
Msa0596490 | AT3G49530.2 | 28.571 | 154 | 91 | 6 | 1 | 136 | 10 | 162 | 2.37e-12 | 65.1 |
Msa0596490 | AT3G49530.1 | 28.571 | 154 | 91 | 6 | 1 | 136 | 10 | 162 | 2.98e-12 | 65.1 |
Msa0596490 | AT1G62700.1 | 30.769 | 156 | 77 | 7 | 4 | 136 | 7 | 154 | 3.02e-12 | 64.7 |
Msa0596490 | AT1G62700.2 | 30.769 | 156 | 77 | 7 | 4 | 136 | 7 | 154 | 3.02e-12 | 64.7 |
Msa0596490 | AT4G36160.2 | 30.573 | 157 | 76 | 7 | 4 | 136 | 14 | 161 | 4.23e-12 | 64.3 |
Msa0596490 | AT4G36160.1 | 30.573 | 157 | 76 | 7 | 4 | 136 | 10 | 157 | 4.23e-12 | 64.3 |
Msa0596490 | AT4G36160.3 | 30.573 | 157 | 76 | 7 | 4 | 136 | 10 | 157 | 4.23e-12 | 64.3 |
Msa0596490 | AT2G18060.3 | 29.936 | 157 | 77 | 7 | 4 | 136 | 9 | 156 | 5.80e-12 | 63.9 |
Msa0596490 | AT2G18060.1 | 29.936 | 157 | 77 | 7 | 4 | 136 | 9 | 156 | 5.80e-12 | 63.9 |
Msa0596490 | AT5G62380.2 | 32.298 | 161 | 74 | 8 | 1 | 136 | 4 | 154 | 1.01e-11 | 63.2 |
Msa0596490 | AT5G62380.1 | 32.298 | 161 | 74 | 8 | 1 | 136 | 4 | 154 | 1.01e-11 | 63.2 |
Msa0596490 | AT5G17260.1 | 31.447 | 159 | 74 | 9 | 4 | 136 | 6 | 155 | 1.66e-11 | 62.8 |
Msa0596490 | AT5G22290.1 | 31.507 | 146 | 77 | 6 | 6 | 135 | 23 | 161 | 1.66e-11 | 62.4 |
Msa0596490 | AT3G03200.1 | 30.128 | 156 | 80 | 7 | 4 | 136 | 6 | 155 | 3.83e-11 | 61.6 |
Msa0596490 | AT3G10490.1 | 32.051 | 156 | 77 | 8 | 4 | 136 | 27 | 176 | 5.05e-11 | 60.5 |
Find 44 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGGATCTGGACTCTGAATT+TGG | 0.253239 | 4_2:-26826984 | Msa0596490:CDS |
CAATGGTTCTGACCTGATTA+AGG | 0.258535 | 4_2:-26827442 | Msa0596490:CDS |
CAGAGGAGGCATTGTAAGAT+TGG | 0.351545 | 4_2:-26827315 | Msa0596490:CDS |
GGCATTGTAAGATTGGGTTT+TGG | 0.353732 | 4_2:-26827308 | Msa0596490:CDS |
TGAAGGAACTCAGCAACTTA+AGG | 0.387687 | 4_2:-26826901 | Msa0596490:CDS |
ATAAGTTCAGCTCCTTAATC+AGG | 0.404146 | 4_2:+26827430 | None:intergenic |
GAAGAGGTTCAGAATTTCAA+TGG | 0.424440 | 4_2:-26827459 | Msa0596490:CDS |
GAAGGAACTCAGCAACTTAA+GGG | 0.437746 | 4_2:-26826900 | Msa0596490:CDS |
CCTCCTCTGCTCATCAACTT+TGG | 0.439795 | 4_2:+26827329 | None:intergenic |
AAAACGCGGCAAACAACAAA+AGG | 0.449123 | 4_2:+26827023 | None:intergenic |
AGAGGAGGCATTGTAAGATT+GGG | 0.450614 | 4_2:-26827314 | Msa0596490:CDS |
TGGAGTTGATAACGTGGTTG+TGG | 0.453423 | 4_2:-26827256 | Msa0596490:CDS |
GAATTCCTTCCACCTGGTGT+TGG | 0.454396 | 4_2:-26827537 | Msa0596490:CDS |
CTGCCCTAGAGGGATGGATC+TGG | 0.463977 | 4_2:-26826997 | Msa0596490:CDS |
TTCGATGACAAGGCGAATGA+AGG | 0.469350 | 4_2:-26826918 | Msa0596490:CDS |
GAGTCCAGATCCATCCCTCT+AGG | 0.508074 | 4_2:+26826993 | None:intergenic |
GTGAAGCAGTAAAATTCCCT+TGG | 0.508645 | 4_2:+26827354 | None:intergenic |
ACCTTCATCGACATCAGAAA+AGG | 0.512248 | 4_2:+26826959 | None:intergenic |
GGAGTTGATAACGTGGTTGT+GGG | 0.517524 | 4_2:-26827255 | Msa0596490:CDS |
GGAGTTGTTCGAGACATTTG+TGG | 0.527780 | 4_2:-26827276 | Msa0596490:CDS |
GGCTACTCAAGCCACTCCTT+AGG | 0.532323 | 4_2:-26826829 | None:intergenic |
AGTAAAATTCCCTTGGGTGA+CGG | 0.539767 | 4_2:+26827361 | None:intergenic |
CCAAAGTTGATGAGCAGAGG+AGG | 0.542469 | 4_2:-26827329 | Msa0596490:CDS |
TGAAGCAGTAAAATTCCCTT+GGG | 0.544541 | 4_2:+26827355 | None:intergenic |
TAACAAGGAGCTCATCTGAA+GGG | 0.545729 | 4_2:+26827508 | None:intergenic |
AGAACGCGATCAAAACTAGC+TGG | 0.546737 | 4_2:-26827191 | Msa0596490:CDS |
AGGAGTGGCTTGAGTAGCCA+TGG | 0.558328 | 4_2:+26826833 | None:intergenic |
GAAGGGGCGAAGCCAACACC+AGG | 0.562826 | 4_2:+26827525 | None:intergenic |
CGAAGCCAACACCAGGTGGA+AGG | 0.569669 | 4_2:+26827532 | None:intergenic |
AGGCTATGCATCGCATTCCA+TGG | 0.571087 | 4_2:-26826850 | Msa0596490:CDS |
AGTCCAGATCCATCCCTCTA+GGG | 0.585447 | 4_2:+26826994 | None:intergenic |
CACTCAGGTTAACAACCCTC+AGG | 0.585811 | 4_2:-26827154 | Msa0596490:intron |
CAGCCAAAGTTGATGAGCAG+AGG | 0.590799 | 4_2:-26827332 | Msa0596490:CDS |
CTAACAAGGAGCTCATCTGA+AGG | 0.597005 | 4_2:+26827507 | None:intergenic |
GGAATGGAATTCCTTCCACC+TGG | 0.603855 | 4_2:-26827543 | Msa0596490:CDS |
AAGGAACTCAGCAACTTAAG+GGG | 0.605135 | 4_2:-26826899 | Msa0596490:CDS |
TGGCAAGGTAGTAGCTAACA+AGG | 0.615826 | 4_2:+26827493 | None:intergenic |
AACAAGGAGCTCATCTGAAG+GGG | 0.618835 | 4_2:+26827509 | None:intergenic |
GGGGCGAAGCCAACACCAGG+TGG | 0.632420 | 4_2:+26827528 | None:intergenic |
GACTATGTACGAGTACACTC+AGG | 0.643748 | 4_2:-26827169 | Msa0596490:CDS |
TGATGACGACTTCGATGACA+AGG | 0.644951 | 4_2:-26826928 | Msa0596490:CDS |
GCTAGTTCTAGTGCTGAGCA+AGG | 0.673401 | 4_2:-26826870 | Msa0596490:CDS |
AGGAACTCAGCAACTTAAGG+GGG | 0.676579 | 4_2:-26826898 | Msa0596490:CDS |
CATTTGTGGAGTTGATAACG+TGG | 0.688917 | 4_2:-26827262 | Msa0596490:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAATATAAATAATTATGC+AGG | - | chr4_2:26827322-26827341 | Msa0596490:CDS | 10.0% |
!!! | TCTCTTTTTATGTTCTATAT+AGG | - | chr4_2:26827145-26827164 | Msa0596490:intron | 20.0% |
!! | TCGATGATTAATTTATGTAT+TGG | - | chr4_2:26827283-26827302 | Msa0596490:CDS | 20.0% |
! | TCGATGAAATAATGAACATA+TGG | + | chr4_2:26827267-26827286 | None:intergenic | 25.0% |
!!! | AACCTCTTCATTGTTTTTGT+TGG | + | chr4_2:26826900-26826919 | None:intergenic | 30.0% |
!! | AAGAAAAATGATGGACTAAG+AGG | + | chr4_2:26826989-26827008 | None:intergenic | 30.0% |
!!! | CTTCATTGTTTTTGTTGGCA+AGG | + | chr4_2:26826895-26826914 | None:intergenic | 35.0% |
TGCCAACAAAAACAATGAAG+AGG | - | chr4_2:26826895-26826914 | Msa0596490:CDS | 35.0% | |
GAAGAGGTTCAGAATTTCAA+TGG | - | chr4_2:26826911-26826930 | Msa0596490:CDS | 35.0% | |
ATAAGTTCAGCTCCTTAATC+AGG | + | chr4_2:26826943-26826962 | None:intergenic | 35.0% | |
! | GCAATTCTAATGGATCATAC+TGG | + | chr4_2:26826967-26826986 | None:intergenic | 35.0% |
TGAAGCAGTAAAATTCCCTT+GGG | + | chr4_2:26827018-26827037 | None:intergenic | 35.0% | |
TAACAAGGAGCTCATCTGAA+GGG | + | chr4_2:26826865-26826884 | None:intergenic | 40.0% | |
!! | CAATGGTTCTGACCTGATTA+AGG | - | chr4_2:26826928-26826947 | Msa0596490:CDS | 40.0% |
GGACTAAGAGGCAATTCTAA+TGG | + | chr4_2:26826977-26826996 | None:intergenic | 40.0% | |
! | ATTTTTCTTCCGTCACCCAA+GGG | - | chr4_2:26827000-26827019 | Msa0596490:CDS | 40.0% |
AGTAAAATTCCCTTGGGTGA+CGG | + | chr4_2:26827012-26827031 | None:intergenic | 40.0% | |
GTGAAGCAGTAAAATTCCCT+TGG | + | chr4_2:26827019-26827038 | None:intergenic | 40.0% | |
!! | AGAGGAGGCATTGTAAGATT+GGG | - | chr4_2:26827056-26827075 | Msa0596490:intron | 40.0% |
! | GGCATTGTAAGATTGGGTTT+TGG | - | chr4_2:26827062-26827081 | Msa0596490:intron | 40.0% |
!!! | ATTGGGTTTTGGATGCGTAA+GGG | - | chr4_2:26827073-26827092 | Msa0596490:intron | 40.0% |
!! | CATTTGTGGAGTTGATAACG+TGG | - | chr4_2:26827108-26827127 | Msa0596490:intron | 40.0% |
!!! | TAGTTTTGATCGCGTTCTGA+GGG | + | chr4_2:26827177-26827196 | None:intergenic | 40.0% |
! | AACCCTCAGGTATGTCATTT+GGG | - | chr4_2:26827229-26827248 | Msa0596490:CDS | 40.0% |
TTCCCAAATGACATACCTGA+GGG | + | chr4_2:26827234-26827253 | None:intergenic | 40.0% | |
TTTCCCAAATGACATACCTG+AGG | + | chr4_2:26827235-26827254 | None:intergenic | 40.0% | |
AAAACGCGGCAAACAACAAA+AGG | + | chr4_2:26827350-26827369 | None:intergenic | 40.0% | |
ATGGATCTGGACTCTGAATT+TGG | - | chr4_2:26827386-26827405 | Msa0596490:intron | 40.0% | |
ACCTTCATCGACATCAGAAA+AGG | + | chr4_2:26827414-26827433 | None:intergenic | 40.0% | |
TGAAGGAACTCAGCAACTTA+AGG | - | chr4_2:26827469-26827488 | Msa0596490:CDS | 40.0% | |
GAAGGAACTCAGCAACTTAA+GGG | - | chr4_2:26827470-26827489 | Msa0596490:CDS | 40.0% | |
AAGGAACTCAGCAACTTAAG+GGG | - | chr4_2:26827471-26827490 | Msa0596490:CDS | 40.0% | |
AACAAGGAGCTCATCTGAAG+GGG | + | chr4_2:26826864-26826883 | None:intergenic | 45.0% | |
CTAACAAGGAGCTCATCTGA+AGG | + | chr4_2:26826866-26826885 | None:intergenic | 45.0% | |
TGGCAAGGTAGTAGCTAACA+AGG | + | chr4_2:26826880-26826899 | None:intergenic | 45.0% | |
!! | GGGTGACGGAAGAAAAATGA+TGG | + | chr4_2:26826998-26827017 | None:intergenic | 45.0% |
! | CATTTTTCTTCCGTCACCCA+AGG | - | chr4_2:26826999-26827018 | Msa0596490:CDS | 45.0% |
!! | CAGAGGAGGCATTGTAAGAT+TGG | - | chr4_2:26827055-26827074 | Msa0596490:intron | 45.0% |
!!! | GATTGGGTTTTGGATGCGTA+AGG | - | chr4_2:26827072-26827091 | Msa0596490:intron | 45.0% |
GGAGTTGTTCGAGACATTTG+TGG | - | chr4_2:26827094-26827113 | Msa0596490:intron | 45.0% | |
!! | TGGAGTTGATAACGTGGTTG+TGG | - | chr4_2:26827114-26827133 | Msa0596490:intron | 45.0% |
!! | GGAGTTGATAACGTGGTTGT+GGG | - | chr4_2:26827115-26827134 | Msa0596490:intron | 45.0% |
!! | AGTTTTGATCGCGTTCTGAG+GGG | + | chr4_2:26827176-26827195 | None:intergenic | 45.0% |
!!! | CTAGTTTTGATCGCGTTCTG+AGG | + | chr4_2:26827178-26827197 | None:intergenic | 45.0% |
AGAACGCGATCAAAACTAGC+TGG | - | chr4_2:26827179-26827198 | Msa0596490:CDS | 45.0% | |
GACTATGTACGAGTACACTC+AGG | - | chr4_2:26827201-26827220 | Msa0596490:CDS | 45.0% | |
CAACCCTCAGGTATGTCATT+TGG | - | chr4_2:26827228-26827247 | Msa0596490:CDS | 45.0% | |
! | GCCTTTTCTGATGTCGATGA+AGG | - | chr4_2:26827410-26827429 | Msa0596490:intron | 45.0% |
! | TGATGACGACTTCGATGACA+AGG | - | chr4_2:26827442-26827461 | Msa0596490:CDS | 45.0% |
TTCGATGACAAGGCGAATGA+AGG | - | chr4_2:26827452-26827471 | Msa0596490:CDS | 45.0% | |
AGGAACTCAGCAACTTAAGG+GGG | - | chr4_2:26827472-26827491 | Msa0596490:CDS | 45.0% | |
GAATTCCTTCCACCTGGTGT+TGG | - | chr4_2:26826833-26826852 | Msa0596490:CDS | 50.0% | |
!! | CAGCCAAAGTTGATGAGCAG+AGG | - | chr4_2:26827038-26827057 | Msa0596490:intron | 50.0% |
CCTCCTCTGCTCATCAACTT+TGG | + | chr4_2:26827044-26827063 | None:intergenic | 50.0% | |
!! | CCAAAGTTGATGAGCAGAGG+AGG | - | chr4_2:26827041-26827060 | Msa0596490:intron | 50.0% |
CACTCAGGTTAACAACCCTC+AGG | - | chr4_2:26827216-26827235 | Msa0596490:CDS | 50.0% | |
!! | CTCTAGGGCAGTCAAAAACG+CGG | + | chr4_2:26827364-26827383 | None:intergenic | 50.0% |
!! | GCGTTTTTGACTGCCCTAGA+GGG | - | chr4_2:26827363-26827382 | Msa0596490:CDS | 50.0% |
!! | TTTTGACTGCCCTAGAGGGA+TGG | - | chr4_2:26827367-26827386 | Msa0596490:CDS | 50.0% |
AGTCCAGATCCATCCCTCTA+GGG | + | chr4_2:26827379-26827398 | None:intergenic | 50.0% | |
!! | GCTAGTTCTAGTGCTGAGCA+AGG | - | chr4_2:26827500-26827519 | Msa0596490:CDS | 50.0% |
AGGCTATGCATCGCATTCCA+TGG | - | chr4_2:26827520-26827539 | Msa0596490:CDS | 50.0% | |
!! | CGCGTTTTTGACTGCCCTAG+AGG | - | chr4_2:26827362-26827381 | Msa0596490:CDS | 55.0% |
GAGTCCAGATCCATCCCTCT+AGG | + | chr4_2:26827380-26827399 | None:intergenic | 55.0% | |
ACTCAGCAACTTAAGGGGGC+TGG | - | chr4_2:26827476-26827495 | Msa0596490:CDS | 55.0% | |
CTCAGCAACTTAAGGGGGCT+GGG | - | chr4_2:26827477-26827496 | Msa0596490:CDS | 55.0% | |
TCAGCAACTTAAGGGGGCTG+GGG | - | chr4_2:26827478-26827497 | Msa0596490:CDS | 55.0% | |
AGGAGTGGCTTGAGTAGCCA+TGG | + | chr4_2:26827540-26827559 | None:intergenic | 55.0% | |
CGAAGCCAACACCAGGTGGA+AGG | + | chr4_2:26826841-26826860 | None:intergenic | 60.0% | |
CTGCCCTAGAGGGATGGATC+TGG | - | chr4_2:26827373-26827392 | Msa0596490:CDS | 60.0% | |
GAAGGGGCGAAGCCAACACC+AGG | + | chr4_2:26826848-26826867 | None:intergenic | 65.0% | |
GGGGCGAAGCCAACACCAGG+TGG | + | chr4_2:26826845-26826864 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 26826830 | 26827562 | 26826830 | ID=Msa0596490;Name=Msa0596490 |
chr4_2 | mRNA | 26826830 | 26827562 | 26826830 | ID=Msa0596490-mRNA-1;Parent=Msa0596490;Name=Msa0596490-mRNA-1;_AED=0.27;_eAED=0.31;_QI=0|0|0|0.66|1|0.66|3|0|199 |
chr4_2 | exon | 26827426 | 26827562 | 26827426 | ID=Msa0596490-mRNA-1:exon:7141;Parent=Msa0596490-mRNA-1 |
chr4_2 | exon | 26827155 | 26827398 | 26827155 | ID=Msa0596490-mRNA-1:exon:7140;Parent=Msa0596490-mRNA-1 |
chr4_2 | exon | 26826830 | 26827048 | 26826830 | ID=Msa0596490-mRNA-1:exon:7139;Parent=Msa0596490-mRNA-1 |
chr4_2 | CDS | 26827426 | 26827562 | 26827426 | ID=Msa0596490-mRNA-1:cds;Parent=Msa0596490-mRNA-1 |
chr4_2 | CDS | 26827155 | 26827398 | 26827155 | ID=Msa0596490-mRNA-1:cds;Parent=Msa0596490-mRNA-1 |
chr4_2 | CDS | 26826830 | 26827048 | 26826830 | ID=Msa0596490-mRNA-1:cds;Parent=Msa0596490-mRNA-1 |
Gene Sequence |
Protein sequence |