Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0596500 | TKY57837.1 | 45.930 | 172 | 76 | 4 | 3 | 158 | 8 | 178 | 1.16e-40 | 149 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0596500 | sp|Q9C8W9|NAC30_ARATH | 30.189 | 159 | 80 | 6 | 4 | 139 | 9 | 159 | 2.30e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0596500 | TF | NAC |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0596500 | MtrunA17_Chr1g0200561 | 27.869 | 183 | 101 | 6 | 4 | 163 | 19 | 193 | 1.00e-12 | 65.9 |
Msa0596500 | MtrunA17_Chr5g0398971 | 29.936 | 157 | 79 | 6 | 4 | 136 | 7 | 156 | 1.39e-12 | 65.1 |
Msa0596500 | MtrunA17_Chr4g0056541 | 30.769 | 156 | 77 | 6 | 4 | 136 | 7 | 154 | 5.28e-12 | 63.5 |
Msa0596500 | MtrunA17_Chr5g0405211 | 29.936 | 157 | 77 | 7 | 4 | 136 | 8 | 155 | 5.90e-12 | 63.5 |
Msa0596500 | MtrunA17_Chr4g0017921 | 30.508 | 177 | 89 | 10 | 4 | 156 | 8 | 174 | 1.05e-11 | 62.8 |
Msa0596500 | MtrunA17_Chr1g0147421 | 31.126 | 151 | 87 | 5 | 2 | 136 | 25 | 174 | 1.17e-11 | 62.8 |
Msa0596500 | MtrunA17_Chr4g0018391 | 31.410 | 156 | 76 | 7 | 4 | 136 | 7 | 154 | 1.40e-11 | 62.4 |
Msa0596500 | MtrunA17_Chr1g0183741 | 33.113 | 151 | 77 | 9 | 4 | 136 | 10 | 154 | 3.60e-11 | 60.8 |
Msa0596500 | MtrunA17_Chr3g0109821 | 30.323 | 155 | 81 | 7 | 4 | 136 | 6 | 155 | 4.10e-11 | 61.2 |
Msa0596500 | MtrunA17_Chr7g0261411 | 33.557 | 149 | 79 | 8 | 4 | 136 | 10 | 154 | 4.46e-11 | 60.5 |
Msa0596500 | MtrunA17_Chr3g0128151 | 28.729 | 181 | 100 | 10 | 1 | 160 | 19 | 191 | 6.62e-11 | 60.8 |
Msa0596500 | MtrunA17_Chr8g0384351 | 28.571 | 168 | 96 | 6 | 4 | 162 | 10 | 162 | 6.98e-11 | 58.9 |
Msa0596500 | MtrunA17_Chr8g0345671 | 32.468 | 154 | 75 | 8 | 4 | 136 | 11 | 156 | 7.69e-11 | 60.5 |
Msa0596500 | MtrunA17_Chr7g0263931 | 31.013 | 158 | 77 | 8 | 4 | 135 | 11 | 162 | 8.84e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0596500 | AT2G27300.1 | 31.293 | 147 | 79 | 5 | 4 | 135 | 14 | 153 | 1.43e-13 | 68.6 |
Msa0596500 | AT3G17730.1 | 31.613 | 155 | 78 | 8 | 4 | 136 | 6 | 154 | 2.31e-13 | 67.0 |
Msa0596500 | AT1G71930.2 | 30.189 | 159 | 80 | 6 | 4 | 139 | 9 | 159 | 2.34e-12 | 65.1 |
Msa0596500 | AT1G71930.1 | 30.189 | 159 | 80 | 6 | 4 | 139 | 9 | 159 | 2.34e-12 | 65.1 |
Msa0596500 | AT3G49530.2 | 28.571 | 154 | 91 | 6 | 1 | 136 | 10 | 162 | 2.37e-12 | 65.1 |
Msa0596500 | AT3G49530.1 | 28.571 | 154 | 91 | 6 | 1 | 136 | 10 | 162 | 2.98e-12 | 65.1 |
Msa0596500 | AT1G62700.1 | 30.769 | 156 | 77 | 7 | 4 | 136 | 7 | 154 | 3.02e-12 | 64.7 |
Msa0596500 | AT1G62700.2 | 30.769 | 156 | 77 | 7 | 4 | 136 | 7 | 154 | 3.02e-12 | 64.7 |
Msa0596500 | AT4G36160.2 | 30.573 | 157 | 76 | 7 | 4 | 136 | 14 | 161 | 4.23e-12 | 64.3 |
Msa0596500 | AT4G36160.1 | 30.573 | 157 | 76 | 7 | 4 | 136 | 10 | 157 | 4.23e-12 | 64.3 |
Msa0596500 | AT4G36160.3 | 30.573 | 157 | 76 | 7 | 4 | 136 | 10 | 157 | 4.23e-12 | 64.3 |
Msa0596500 | AT2G18060.3 | 29.936 | 157 | 77 | 7 | 4 | 136 | 9 | 156 | 5.80e-12 | 63.9 |
Msa0596500 | AT2G18060.1 | 29.936 | 157 | 77 | 7 | 4 | 136 | 9 | 156 | 5.80e-12 | 63.9 |
Msa0596500 | AT5G62380.2 | 32.298 | 161 | 74 | 8 | 1 | 136 | 4 | 154 | 1.01e-11 | 63.2 |
Msa0596500 | AT5G62380.1 | 32.298 | 161 | 74 | 8 | 1 | 136 | 4 | 154 | 1.01e-11 | 63.2 |
Msa0596500 | AT5G17260.1 | 31.447 | 159 | 74 | 9 | 4 | 136 | 6 | 155 | 1.66e-11 | 62.8 |
Msa0596500 | AT5G22290.1 | 31.507 | 146 | 77 | 6 | 6 | 135 | 23 | 161 | 1.66e-11 | 62.4 |
Msa0596500 | AT3G03200.1 | 30.128 | 156 | 80 | 7 | 4 | 136 | 6 | 155 | 3.83e-11 | 61.6 |
Msa0596500 | AT3G10490.1 | 32.051 | 156 | 77 | 8 | 4 | 136 | 27 | 176 | 5.05e-11 | 60.5 |
Find 44 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGGATCTGGACTCTGAATT+TGG | 0.253239 | 4_2:+26863888 | Msa0596500:CDS |
CAATGGTTCTGACCTGATTA+AGG | 0.258535 | 4_2:+26863430 | Msa0596500:CDS |
CAGAGGAGGCATTGTAAGAT+TGG | 0.351545 | 4_2:+26863557 | Msa0596500:CDS |
GGCATTGTAAGATTGGGTTT+TGG | 0.353732 | 4_2:+26863564 | Msa0596500:CDS |
TGAAGGAACTCAGCAACTTA+AGG | 0.387687 | 4_2:+26863971 | Msa0596500:CDS |
ATAAGTTCAGCTCCTTAATC+AGG | 0.404146 | 4_2:-26863442 | None:intergenic |
GAAGAGGTTCAGAATTTCAA+TGG | 0.424440 | 4_2:+26863413 | Msa0596500:CDS |
GAAGGAACTCAGCAACTTAA+GGG | 0.437746 | 4_2:+26863972 | Msa0596500:CDS |
CCTCCTCTGCTCATCAACTT+TGG | 0.439795 | 4_2:-26863543 | None:intergenic |
AAAACGCGGCAAACAACAAA+AGG | 0.449123 | 4_2:-26863849 | None:intergenic |
AGAGGAGGCATTGTAAGATT+GGG | 0.450614 | 4_2:+26863558 | Msa0596500:CDS |
TGGAGTTGATAACGTGGTTG+TGG | 0.453423 | 4_2:+26863616 | Msa0596500:CDS |
GAATTCCTTCCACCTGGTGT+TGG | 0.454396 | 4_2:+26863335 | Msa0596500:CDS |
CTGCCCTAGAGGGATGGATC+TGG | 0.463977 | 4_2:+26863875 | Msa0596500:CDS |
TTCGATGACAAGGCGAATGA+AGG | 0.469350 | 4_2:+26863954 | Msa0596500:CDS |
GAGTCCAGATCCATCCCTCT+AGG | 0.508074 | 4_2:-26863879 | None:intergenic |
GTGAAGCAGTAAAATTCCCT+TGG | 0.508645 | 4_2:-26863518 | None:intergenic |
ACCTTCATCGACATCAGAAA+AGG | 0.512248 | 4_2:-26863913 | None:intergenic |
GGAGTTGATAACGTGGTTGT+GGG | 0.517524 | 4_2:+26863617 | Msa0596500:CDS |
GGAGTTGTTCGAGACATTTG+TGG | 0.527780 | 4_2:+26863596 | Msa0596500:CDS |
GGCTACTCAAGCCACTCCTT+AGG | 0.532323 | 4_2:+26864043 | Msa0596500:CDS |
AGTAAAATTCCCTTGGGTGA+CGG | 0.539767 | 4_2:-26863511 | None:intergenic |
CCAAAGTTGATGAGCAGAGG+AGG | 0.542469 | 4_2:+26863543 | Msa0596500:CDS |
TGAAGCAGTAAAATTCCCTT+GGG | 0.544541 | 4_2:-26863517 | None:intergenic |
TAACAAGGAGCTCATCTGAA+GGG | 0.545729 | 4_2:-26863364 | None:intergenic |
AGAACGCGATCAAAACTAGC+TGG | 0.546737 | 4_2:+26863681 | Msa0596500:CDS |
AGGAGTGGCTTGAGTAGCCA+TGG | 0.558328 | 4_2:-26864039 | None:intergenic |
GAAGGGGCGAAGCCAACACC+AGG | 0.562826 | 4_2:-26863347 | None:intergenic |
CGAAGCCAACACCAGGTGGA+AGG | 0.569669 | 4_2:-26863340 | None:intergenic |
AGGCTATGCATCGCATTCCA+TGG | 0.571087 | 4_2:+26864022 | Msa0596500:CDS |
AGTCCAGATCCATCCCTCTA+GGG | 0.585447 | 4_2:-26863878 | None:intergenic |
CACTCAGGTTAACAACCCTC+AGG | 0.585811 | 4_2:+26863718 | Msa0596500:CDS |
CAGCCAAAGTTGATGAGCAG+AGG | 0.590799 | 4_2:+26863540 | Msa0596500:CDS |
CTAACAAGGAGCTCATCTGA+AGG | 0.597005 | 4_2:-26863365 | None:intergenic |
GGAATGGAATTCCTTCCACC+TGG | 0.603855 | 4_2:+26863329 | None:intergenic |
AAGGAACTCAGCAACTTAAG+GGG | 0.605135 | 4_2:+26863973 | Msa0596500:CDS |
TGGCAAGGTAGTAGCTAACA+AGG | 0.615826 | 4_2:-26863379 | None:intergenic |
AACAAGGAGCTCATCTGAAG+GGG | 0.618835 | 4_2:-26863363 | None:intergenic |
GGGGCGAAGCCAACACCAGG+TGG | 0.632420 | 4_2:-26863344 | None:intergenic |
GACTATGTACGAGTACACTC+AGG | 0.643748 | 4_2:+26863703 | Msa0596500:CDS |
TGATGACGACTTCGATGACA+AGG | 0.644951 | 4_2:+26863944 | Msa0596500:CDS |
GCTAGTTCTAGTGCTGAGCA+AGG | 0.673401 | 4_2:+26864002 | Msa0596500:CDS |
AGGAACTCAGCAACTTAAGG+GGG | 0.676579 | 4_2:+26863974 | Msa0596500:CDS |
CATTTGTGGAGTTGATAACG+TGG | 0.688917 | 4_2:+26863610 | Msa0596500:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAATATAAATAATTATGC+AGG | + | chr4_2:26863824-26863843 | Msa0596500:intron | 10.0% |
!!! | TCTCTTTTTATGTTCTATAT+AGG | + | chr4_2:26863647-26863666 | Msa0596500:CDS | 20.0% |
!! | TCGATGATTAATTTATGTAT+TGG | + | chr4_2:26863785-26863804 | Msa0596500:intron | 20.0% |
! | TCGATGAAATAATGAACATA+TGG | - | chr4_2:26863769-26863788 | None:intergenic | 25.0% |
!!! | AACCTCTTCATTGTTTTTGT+TGG | - | chr4_2:26863402-26863421 | None:intergenic | 30.0% |
!! | AAGAAAAATGATGGACTAAG+AGG | - | chr4_2:26863491-26863510 | None:intergenic | 30.0% |
!!! | CTTCATTGTTTTTGTTGGCA+AGG | - | chr4_2:26863397-26863416 | None:intergenic | 35.0% |
TGCCAACAAAAACAATGAAG+AGG | + | chr4_2:26863397-26863416 | Msa0596500:CDS | 35.0% | |
GAAGAGGTTCAGAATTTCAA+TGG | + | chr4_2:26863413-26863432 | Msa0596500:CDS | 35.0% | |
ATAAGTTCAGCTCCTTAATC+AGG | - | chr4_2:26863445-26863464 | None:intergenic | 35.0% | |
! | GCAATTCTAATGGATCATAC+TGG | - | chr4_2:26863469-26863488 | None:intergenic | 35.0% |
TGAAGCAGTAAAATTCCCTT+GGG | - | chr4_2:26863520-26863539 | None:intergenic | 35.0% | |
TAACAAGGAGCTCATCTGAA+GGG | - | chr4_2:26863367-26863386 | None:intergenic | 40.0% | |
!! | CAATGGTTCTGACCTGATTA+AGG | + | chr4_2:26863430-26863449 | Msa0596500:CDS | 40.0% |
GGACTAAGAGGCAATTCTAA+TGG | - | chr4_2:26863479-26863498 | None:intergenic | 40.0% | |
! | ATTTTTCTTCCGTCACCCAA+GGG | + | chr4_2:26863502-26863521 | Msa0596500:CDS | 40.0% |
AGTAAAATTCCCTTGGGTGA+CGG | - | chr4_2:26863514-26863533 | None:intergenic | 40.0% | |
GTGAAGCAGTAAAATTCCCT+TGG | - | chr4_2:26863521-26863540 | None:intergenic | 40.0% | |
!! | AGAGGAGGCATTGTAAGATT+GGG | + | chr4_2:26863558-26863577 | Msa0596500:CDS | 40.0% |
! | GGCATTGTAAGATTGGGTTT+TGG | + | chr4_2:26863564-26863583 | Msa0596500:CDS | 40.0% |
!!! | ATTGGGTTTTGGATGCGTAA+GGG | + | chr4_2:26863575-26863594 | Msa0596500:CDS | 40.0% |
!! | CATTTGTGGAGTTGATAACG+TGG | + | chr4_2:26863610-26863629 | Msa0596500:CDS | 40.0% |
!!! | TAGTTTTGATCGCGTTCTGA+GGG | - | chr4_2:26863679-26863698 | None:intergenic | 40.0% |
! | AACCCTCAGGTATGTCATTT+GGG | + | chr4_2:26863731-26863750 | Msa0596500:intron | 40.0% |
TTCCCAAATGACATACCTGA+GGG | - | chr4_2:26863736-26863755 | None:intergenic | 40.0% | |
TTTCCCAAATGACATACCTG+AGG | - | chr4_2:26863737-26863756 | None:intergenic | 40.0% | |
AAAACGCGGCAAACAACAAA+AGG | - | chr4_2:26863852-26863871 | None:intergenic | 40.0% | |
ATGGATCTGGACTCTGAATT+TGG | + | chr4_2:26863888-26863907 | Msa0596500:CDS | 40.0% | |
ACCTTCATCGACATCAGAAA+AGG | - | chr4_2:26863916-26863935 | None:intergenic | 40.0% | |
TGAAGGAACTCAGCAACTTA+AGG | + | chr4_2:26863971-26863990 | Msa0596500:CDS | 40.0% | |
GAAGGAACTCAGCAACTTAA+GGG | + | chr4_2:26863972-26863991 | Msa0596500:CDS | 40.0% | |
AAGGAACTCAGCAACTTAAG+GGG | + | chr4_2:26863973-26863992 | Msa0596500:CDS | 40.0% | |
AACAAGGAGCTCATCTGAAG+GGG | - | chr4_2:26863366-26863385 | None:intergenic | 45.0% | |
CTAACAAGGAGCTCATCTGA+AGG | - | chr4_2:26863368-26863387 | None:intergenic | 45.0% | |
TGGCAAGGTAGTAGCTAACA+AGG | - | chr4_2:26863382-26863401 | None:intergenic | 45.0% | |
!! | GGGTGACGGAAGAAAAATGA+TGG | - | chr4_2:26863500-26863519 | None:intergenic | 45.0% |
! | CATTTTTCTTCCGTCACCCA+AGG | + | chr4_2:26863501-26863520 | Msa0596500:CDS | 45.0% |
!! | CAGAGGAGGCATTGTAAGAT+TGG | + | chr4_2:26863557-26863576 | Msa0596500:CDS | 45.0% |
!!! | GATTGGGTTTTGGATGCGTA+AGG | + | chr4_2:26863574-26863593 | Msa0596500:CDS | 45.0% |
GGAGTTGTTCGAGACATTTG+TGG | + | chr4_2:26863596-26863615 | Msa0596500:CDS | 45.0% | |
!! | TGGAGTTGATAACGTGGTTG+TGG | + | chr4_2:26863616-26863635 | Msa0596500:CDS | 45.0% |
!! | GGAGTTGATAACGTGGTTGT+GGG | + | chr4_2:26863617-26863636 | Msa0596500:CDS | 45.0% |
!! | AGTTTTGATCGCGTTCTGAG+GGG | - | chr4_2:26863678-26863697 | None:intergenic | 45.0% |
!!! | CTAGTTTTGATCGCGTTCTG+AGG | - | chr4_2:26863680-26863699 | None:intergenic | 45.0% |
AGAACGCGATCAAAACTAGC+TGG | + | chr4_2:26863681-26863700 | Msa0596500:CDS | 45.0% | |
GACTATGTACGAGTACACTC+AGG | + | chr4_2:26863703-26863722 | Msa0596500:CDS | 45.0% | |
CAACCCTCAGGTATGTCATT+TGG | + | chr4_2:26863730-26863749 | Msa0596500:intron | 45.0% | |
! | GCCTTTTCTGATGTCGATGA+AGG | + | chr4_2:26863912-26863931 | Msa0596500:CDS | 45.0% |
! | TGATGACGACTTCGATGACA+AGG | + | chr4_2:26863944-26863963 | Msa0596500:CDS | 45.0% |
TTCGATGACAAGGCGAATGA+AGG | + | chr4_2:26863954-26863973 | Msa0596500:CDS | 45.0% | |
AGGAACTCAGCAACTTAAGG+GGG | + | chr4_2:26863974-26863993 | Msa0596500:CDS | 45.0% | |
GAATTCCTTCCACCTGGTGT+TGG | + | chr4_2:26863335-26863354 | Msa0596500:CDS | 50.0% | |
!! | CAGCCAAAGTTGATGAGCAG+AGG | + | chr4_2:26863540-26863559 | Msa0596500:CDS | 50.0% |
CCTCCTCTGCTCATCAACTT+TGG | - | chr4_2:26863546-26863565 | None:intergenic | 50.0% | |
!! | CCAAAGTTGATGAGCAGAGG+AGG | + | chr4_2:26863543-26863562 | Msa0596500:CDS | 50.0% |
CACTCAGGTTAACAACCCTC+AGG | + | chr4_2:26863718-26863737 | Msa0596500:CDS | 50.0% | |
!! | CTCTAGGGCAGTCAAAAACG+CGG | - | chr4_2:26863866-26863885 | None:intergenic | 50.0% |
!! | GCGTTTTTGACTGCCCTAGA+GGG | + | chr4_2:26863865-26863884 | Msa0596500:CDS | 50.0% |
!! | TTTTGACTGCCCTAGAGGGA+TGG | + | chr4_2:26863869-26863888 | Msa0596500:CDS | 50.0% |
AGTCCAGATCCATCCCTCTA+GGG | - | chr4_2:26863881-26863900 | None:intergenic | 50.0% | |
!! | GCTAGTTCTAGTGCTGAGCA+AGG | + | chr4_2:26864002-26864021 | Msa0596500:CDS | 50.0% |
AGGCTATGCATCGCATTCCA+TGG | + | chr4_2:26864022-26864041 | Msa0596500:CDS | 50.0% | |
!! | CGCGTTTTTGACTGCCCTAG+AGG | + | chr4_2:26863864-26863883 | Msa0596500:CDS | 55.0% |
GAGTCCAGATCCATCCCTCT+AGG | - | chr4_2:26863882-26863901 | None:intergenic | 55.0% | |
ACTCAGCAACTTAAGGGGGC+TGG | + | chr4_2:26863978-26863997 | Msa0596500:CDS | 55.0% | |
CTCAGCAACTTAAGGGGGCT+GGG | + | chr4_2:26863979-26863998 | Msa0596500:CDS | 55.0% | |
TCAGCAACTTAAGGGGGCTG+GGG | + | chr4_2:26863980-26863999 | Msa0596500:CDS | 55.0% | |
AGGAGTGGCTTGAGTAGCCA+TGG | - | chr4_2:26864042-26864061 | None:intergenic | 55.0% | |
CGAAGCCAACACCAGGTGGA+AGG | - | chr4_2:26863343-26863362 | None:intergenic | 60.0% | |
CTGCCCTAGAGGGATGGATC+TGG | + | chr4_2:26863875-26863894 | Msa0596500:CDS | 60.0% | |
GAAGGGGCGAAGCCAACACC+AGG | - | chr4_2:26863350-26863369 | None:intergenic | 65.0% | |
GGGGCGAAGCCAACACCAGG+TGG | - | chr4_2:26863347-26863366 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 26863332 | 26864064 | 26863332 | ID=Msa0596500;Name=Msa0596500 |
chr4_2 | mRNA | 26863332 | 26864064 | 26863332 | ID=Msa0596500-mRNA-1;Parent=Msa0596500;Name=Msa0596500-mRNA-1;_AED=0.27;_eAED=0.31;_QI=0|0|0|0.66|0.5|0.33|3|0|199 |
chr4_2 | exon | 26863332 | 26863468 | 26863332 | ID=Msa0596500-mRNA-1:exon:7136;Parent=Msa0596500-mRNA-1 |
chr4_2 | exon | 26863496 | 26863739 | 26863496 | ID=Msa0596500-mRNA-1:exon:7137;Parent=Msa0596500-mRNA-1 |
chr4_2 | exon | 26863846 | 26864064 | 26863846 | ID=Msa0596500-mRNA-1:exon:7138;Parent=Msa0596500-mRNA-1 |
chr4_2 | CDS | 26863332 | 26863468 | 26863332 | ID=Msa0596500-mRNA-1:cds;Parent=Msa0596500-mRNA-1 |
chr4_2 | CDS | 26863496 | 26863739 | 26863496 | ID=Msa0596500-mRNA-1:cds;Parent=Msa0596500-mRNA-1 |
chr4_2 | CDS | 26863846 | 26864064 | 26863846 | ID=Msa0596500-mRNA-1:cds;Parent=Msa0596500-mRNA-1 |
Gene Sequence |
Protein sequence |