AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0597260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0597260 MtrunA17_Chr4g0047001 93.573 389 7 7 1 376 1 384 0.0 717
Msa0597260 MtrunA17_Chr2g0282511 41.689 379 136 17 8 376 6 309 1.71e-49 169
Msa0597260 MtrunA17_Chr8g0367161 62.651 83 31 0 45 127 23 105 2.82e-34 129
Msa0597260 MtrunA17_Chr8g0374251 73.529 68 18 0 49 116 63 130 6.41e-33 125
Msa0597260 MtrunA17_Chr2g0328021 76.562 64 15 0 54 117 62 125 8.64e-33 124
Msa0597260 MtrunA17_Chr4g0010151 46.032 126 68 0 47 172 75 200 1.28e-32 125
Msa0597260 MtrunA17_Chr4g0031411 62.222 90 30 1 47 132 68 157 1.58e-32 124
Msa0597260 MtrunA17_Chr2g0326001 83.333 60 10 0 49 108 35 94 2.22e-32 123
Msa0597260 MtrunA17_Chr4g0030051 85.965 57 8 0 50 106 37 93 8.52e-32 121
Msa0597260 MtrunA17_Chr8g0346551 50.847 118 53 2 43 156 13 129 8.69e-32 120
Msa0597260 MtrunA17_Chr3g0127201 71.233 73 16 1 41 108 9 81 1.21e-31 121
Msa0597260 MtrunA17_Chr8g0374111 61.176 85 31 1 41 125 18 100 2.23e-31 119
Msa0597260 MtrunA17_Chr3g0126201 55.882 102 38 2 15 110 7 107 6.39e-31 120
Msa0597260 MtrunA17_Chr2g0282051 66.667 78 19 2 39 110 25 101 3.25e-30 117
Msa0597260 MtrunA17_Chr2g0282441 77.049 61 14 0 45 105 16 76 3.33e-30 118
Msa0597260 MtrunA17_Chr5g0411951 79.630 54 11 0 51 104 40 93 2.13e-29 116
Msa0597260 MtrunA17_Chr7g0223311 71.875 64 18 0 53 116 76 139 2.32e-29 116
Msa0597260 MtrunA17_Chr1g0177251 79.310 58 12 0 51 108 9 66 2.85e-29 114
Msa0597260 MtrunA17_Chr4g0047761 72.973 74 19 1 38 111 56 128 3.27e-29 115
Msa0597260 MtrunA17_Chr1g0188851 67.606 71 21 1 40 108 27 97 3.79e-29 114
Msa0597260 MtrunA17_Chr8g0341671 78.571 56 12 0 50 105 16 71 7.39e-29 111
Msa0597260 MtrunA17_Chr3g0117601 72.131 61 17 0 44 104 51 111 1.87e-28 113
Msa0597260 MtrunA17_Chr4g0061761 81.132 53 10 0 52 104 38 90 1.91e-28 113
Msa0597260 MtrunA17_Chr2g0308011 84.000 50 8 0 53 102 36 85 8.34e-27 106
Msa0597260 MtrunA17_Chr3g0092111 65.625 64 22 0 44 107 126 189 2.03e-26 109
Msa0597260 MtrunA17_Chr4g0042481 62.121 66 25 0 44 109 112 177 6.48e-26 108
Msa0597260 MtrunA17_Chr7g0254161 63.077 65 24 0 45 109 92 156 1.12e-25 107
Msa0597260 MtrunA17_Chr7g0217581 65.079 63 22 0 45 107 223 285 3.58e-25 107
Msa0597260 MtrunA17_Chr6g0453321 67.213 61 20 0 47 107 129 189 6.61e-25 105
Msa0597260 MtrunA17_Chr8g0355261 45.918 98 43 2 13 108 83 172 7.65e-25 105
Msa0597260 MtrunA17_Chr2g0283811 50.000 94 38 2 44 137 37 121 1.60e-24 98.6
Msa0597260 MtrunA17_Chr6g0460721 45.745 94 41 2 16 109 61 144 2.07e-24 102
Msa0597260 MtrunA17_Chr6g0460731 58.462 65 27 0 45 109 87 151 4.87e-24 102
Msa0597260 MtrunA17_Chr5g0417571 63.333 60 22 0 48 107 132 191 4.05e-23 98.6
Msa0597260 MtrunA17_Chr5g0417601 64.407 59 21 0 49 107 135 193 2.66e-21 94.4
Msa0597260 MtrunA17_Chr5g0417551 67.857 56 18 0 52 107 125 180 4.29e-21 93.6
Msa0597260 MtrunA17_Chr5g0417561 70.370 54 16 0 54 107 119 172 6.03e-21 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0597260 AT5G65590.1 38.400 250 112 9 24 268 17 229 6.71e-37 136
Msa0597260 AT1G28310.1 35.455 330 161 13 54 376 27 311 3.09e-35 131
Msa0597260 AT1G28310.2 33.938 386 194 15 1 376 1 335 4.68e-35 132
Msa0597260 AT5G60200.1 81.967 61 11 0 48 108 49 109 4.98e-34 127
Msa0597260 AT3G61850.2 41.818 165 77 4 49 194 57 221 5.03e-33 125
Msa0597260 AT3G61850.3 41.818 165 77 4 49 194 57 221 5.03e-33 125
Msa0597260 AT3G61850.1 41.818 165 77 4 49 194 69 233 5.17e-33 125
Msa0597260 AT2G37590.1 65.753 73 25 0 38 110 73 145 2.77e-32 124
Msa0597260 AT1G07640.1 46.825 126 63 1 35 160 2 123 6.54e-32 122
Msa0597260 AT1G07640.2 40.000 165 88 3 3 160 19 179 1.21e-31 122
Msa0597260 AT1G07640.3 40.000 165 88 3 3 160 27 187 1.35e-31 122
Msa0597260 AT3G55370.1 61.176 85 33 0 26 110 48 132 1.66e-31 122
Msa0597260 AT5G02460.1 82.759 58 10 0 51 108 92 149 2.17e-31 123
Msa0597260 AT3G55370.2 61.176 85 33 0 26 110 48 132 2.72e-31 122
Msa0597260 AT3G55370.3 61.176 85 33 0 26 110 93 177 3.09e-31 122
Msa0597260 AT2G28810.2 79.310 58 12 0 48 105 71 128 4.15e-31 120
Msa0597260 AT5G60850.1 70.667 75 19 1 52 123 49 123 4.60e-31 120
Msa0597260 AT1G21340.1 64.557 79 25 1 39 114 20 98 4.64e-31 119
Msa0597260 AT3G50410.1 63.218 87 28 3 29 111 1 87 5.21e-31 119
Msa0597260 AT2G28810.1 79.310 58 12 0 48 105 88 145 5.90e-31 120
Msa0597260 AT3G45610.1 77.586 58 13 0 51 108 37 94 1.02e-30 117
Msa0597260 AT3G61850.5 52.778 108 41 2 49 146 57 164 1.29e-30 119
Msa0597260 AT1G51700.1 60.215 93 28 3 17 108 4 88 1.56e-30 115
Msa0597260 AT3G61850.4 52.778 108 41 2 49 146 69 176 1.63e-30 119
Msa0597260 AT3G52440.1 81.818 55 10 0 56 110 27 81 2.12e-29 114
Msa0597260 AT3G52440.2 81.818 55 10 0 56 110 46 100 3.21e-29 114
Msa0597260 AT4G00940.1 74.603 63 16 0 51 113 65 127 5.23e-29 114
Msa0597260 AT4G00940.3 74.603 63 16 0 51 113 65 127 5.23e-29 114
Msa0597260 AT4G00940.2 74.603 63 16 0 51 113 65 127 5.23e-29 114
Msa0597260 AT3G21270.1 84.906 53 8 0 54 106 29 81 5.33e-29 112
Msa0597260 AT4G24060.1 75.000 60 15 0 49 108 48 107 6.95e-29 115
Msa0597260 AT4G21050.1 60.000 80 32 0 47 126 17 96 2.14e-28 110
Msa0597260 AT5G66940.1 56.977 86 33 2 50 132 28 112 2.44e-28 110
Msa0597260 AT4G38000.1 79.310 58 11 1 51 107 38 95 7.74e-28 110
Msa0597260 AT2G28510.1 37.931 203 90 5 52 249 46 217 2.26e-27 110
Msa0597260 AT5G62940.1 69.355 62 19 0 43 104 62 123 3.65e-27 111
Msa0597260 AT3G47500.1 66.667 66 22 0 42 107 98 163 2.68e-26 109
Msa0597260 AT5G62430.1 44.860 107 49 2 1 107 11 107 8.57e-26 105
Msa0597260 AT1G64620.1 74.545 55 14 0 49 103 44 98 2.55e-25 105
Msa0597260 AT2G46590.1 78.431 51 11 0 51 101 65 115 2.99e-25 105
Msa0597260 AT2G46590.2 78.431 51 11 0 51 101 77 127 3.85e-25 105
Msa0597260 AT5G39660.3 68.852 61 19 0 47 107 131 191 3.89e-25 106
Msa0597260 AT5G39660.1 68.852 61 19 0 47 107 131 191 3.89e-25 106
Msa0597260 AT5G39660.2 68.852 61 19 0 47 107 131 191 3.89e-25 106
Msa0597260 AT1G26790.1 63.934 61 22 0 47 107 104 164 2.31e-24 103
Msa0597260 AT1G69570.1 60.294 68 27 0 47 114 125 192 2.45e-24 103
Msa0597260 AT1G47655.1 72.549 51 14 0 52 102 27 77 6.42e-24 98.6
Msa0597260 AT1G29160.1 48.315 89 44 1 39 125 45 133 1.91e-23 96.3
Msa0597260 AT2G34140.1 53.086 81 31 1 27 107 38 111 2.35e-23 95.9
Msa0597260 AT4G21040.1 57.143 77 30 2 56 131 27 101 3.01e-23 97.4
Msa0597260 AT4G21080.1 65.517 58 19 1 56 112 27 84 3.09e-21 92.0
Msa0597260 AT4G21030.1 46.053 76 41 0 56 131 23 98 3.51e-14 70.9

Find 91 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATCAATTCTCTTCTTTA+TGG 0.060643 4_2:-29219150 Msa0597260:CDS
CAGATTCTTCTTCTCTTTAT+TGG 0.115189 4_2:-29218621 Msa0597260:CDS
AACAGCAACAACAAGCTTTA+AGG 0.128070 4_2:-29219473 Msa0597260:CDS
ATGTTTCAAGGTTGAAAATT+TGG 0.129187 4_2:-29218239 Msa0597260:three_prime_UTR
TCAAAACCAGATGGAGAATA+TGG 0.176496 4_2:-29218650 Msa0597260:CDS
CTTCTTCAAGTGGTGGAAAT+AGG 0.186986 4_2:-29219527 Msa0597260:CDS
GAATTATGACCAATATTATT+AGG 0.234994 4_2:+29218526 None:intergenic
AACACAGTTACCAAACATTT+TGG 0.243359 4_2:+29219809 None:intergenic
AAAGAAAAGAAGATACTTAA+AGG 0.246990 4_2:-29218331 Msa0597260:three_prime_UTR
CAGGTGAATGGTCTTGGATT+AGG 0.278693 4_2:-29219024 Msa0597260:CDS
ACTAGAGTTTCAAGTTCTTC+TGG 0.293306 4_2:-29219072 Msa0597260:CDS
CATAAAGAAGAGAATTGATA+TGG 0.297144 4_2:+29219151 None:intergenic
AACAACTACAGTTCCATCTT+TGG 0.305663 4_2:-29218934 Msa0597260:CDS
TCATCATGAGGCTGGGATAA+TGG 0.306350 4_2:-29218761 Msa0597260:CDS
TGCTGCAGTGTTGTTGTTGT+TGG 0.309230 4_2:+29218585 None:intergenic
GTAAAGCCTGTAAAAGATAT+TGG 0.311115 4_2:-29219374 Msa0597260:CDS
TGTTTCAAGGTTGAAAATTT+GGG 0.329584 4_2:-29218238 Msa0597260:three_prime_UTR
CATTTGGGGTCAATTGGGTT+TGG 0.331429 4_2:-29218373 Msa0597260:three_prime_UTR
GATGATTACAGAAATGGATT+TGG 0.345610 4_2:-29218967 Msa0597260:CDS
CTTACTCAATCAATCAACTA+TGG 0.352717 4_2:+29218114 None:intergenic
CATCATGATGATTACAGAAA+TGG 0.360895 4_2:-29218973 Msa0597260:CDS
CAACAGGTTTGAGTAGTGTT+TGG 0.362182 4_2:-29218564 Msa0597260:CDS
ACTTAAAGGTGAGAGAGTTT+AGG 0.366369 4_2:-29218317 Msa0597260:three_prime_UTR
TTCTTCAAGTGGTGGAAATA+GGG 0.372187 4_2:-29219526 Msa0597260:CDS
GGATATGGAGGTTCTTCATT+TGG 0.372923 4_2:-29218148 Msa0597260:three_prime_UTR
TTAAGTAGAGAAGCCATAAC+TGG 0.397152 4_2:+29218865 None:intergenic
GGAGCTCAGATCAAGGGATA+TGG 0.400830 4_2:-29218163 Msa0597260:three_prime_UTR
CAGCCTCAGGTGAATGGTCT+TGG 0.403606 4_2:-29219030 Msa0597260:CDS
AAGAGAATTGATATGGTTTG+AGG 0.411504 4_2:+29219158 None:intergenic
GATCACCAACCTAATAATAT+TGG 0.414706 4_2:-29218535 Msa0597260:CDS
CTCATAGAGACCAAAATGTT+TGG 0.415114 4_2:-29219819 Msa0597260:exon
TAGAAGCAATATCAAAACTA+TGG 0.419426 4_2:+29219181 None:intergenic
ATGTTTGAAGAAGAGTGATT+TGG 0.420876 4_2:+29219282 None:intergenic
TAGGTGAAGGACTGCAAAAT+AGG 0.421549 4_2:-29218720 Msa0597260:CDS
CAAAACCAGATGGAGAATAT+GGG 0.434787 4_2:-29218649 Msa0597260:CDS
GGCGCCAACTGCTCTTTGTC+TGG 0.441603 4_2:-29219861 Msa0597260:five_prime_UTR
AACAACAACACTGCAGCAAC+AGG 0.445401 4_2:-29218580 Msa0597260:CDS
AAGTGGTGGAAATAGGGTTA+TGG 0.446908 4_2:-29219520 Msa0597260:CDS
ACTATCTAGCTATCTCTTTG+AGG 0.455828 4_2:-29218458 Msa0597260:three_prime_UTR
AGATGATCATAAGGTTTCAA+TGG 0.457556 4_2:-29219550 Msa0597260:CDS
GGCCTCTACTACTCCAGTTA+TGG 0.463925 4_2:-29218878 Msa0597260:CDS
GAATTGAACCTTGTTGCAAA+AGG 0.464424 4_2:+29219096 None:intergenic
ACAAACCCATATTCTCCATC+TGG 0.464554 4_2:+29218644 None:intergenic
TGGGTTTGGTTTACTTACAT+TGG 0.466899 4_2:-29218359 Msa0597260:three_prime_UTR
TATGACCAATATTATTAGGT+TGG 0.469646 4_2:+29218530 None:intergenic
GGATTTGAATTAGCACTAGT+AGG 0.471068 4_2:+29219225 None:intergenic
TTTCTGCAACCACCACCAAC+AGG 0.472277 4_2:+29219324 None:intergenic
CAGCAGCAGCCTCAGGTGAA+TGG 0.476567 4_2:-29219036 Msa0597260:CDS
ATCCCAGCCTCATGATGAAA+AGG 0.481394 4_2:+29218766 None:intergenic
GCTGCTGGTGGTGGAATGAA+AGG 0.490952 4_2:-29218796 Msa0597260:CDS
TGTCTGTGGAGCTCAGATCA+AGG 0.492001 4_2:-29218170 Msa0597260:three_prime_UTR
GGCTGAGATAGATGATCATA+AGG 0.493744 4_2:-29219559 Msa0597260:CDS
CAGGCTTTACAGAAGTGTCT+TGG 0.500398 4_2:+29219387 None:intergenic
TGAAGGACTGCAAAATAGGT+TGG 0.500845 4_2:-29218716 Msa0597260:CDS
TGTTGTTGTTGTTGAGAAGA+AGG 0.502169 4_2:+29219204 None:intergenic
CCTTGAAACATAAAACTGAC+AGG 0.508654 4_2:+29218251 None:intergenic
CTTAGAAACGTTCCTGTTGG+TGG 0.520182 4_2:-29219336 Msa0597260:CDS
TCATCTTCAGCAGCAGCCTC+AGG 0.526288 4_2:-29219043 Msa0597260:CDS
AACTGGAGTAGTAGAGGCCA+TGG 0.527816 4_2:+29218882 None:intergenic
AGTTGATTGATTGAGTAAGT+TGG 0.528561 4_2:-29218110 Msa0597260:three_prime_UTR
AGTAGAAGAAGAACCAAAGA+TGG 0.540629 4_2:+29218921 None:intergenic
CTAGTAGGAGTTGAAGAAGA+AGG 0.548358 4_2:+29219240 None:intergenic
AGTAACAATATGAATGCTAA+TGG 0.560213 4_2:-29218685 Msa0597260:CDS
GATACCAGACAAAGAGCAGT+TGG 0.560767 4_2:+29219857 None:intergenic
TGTAAAAGATATTGGACAAG+AGG 0.561250 4_2:-29219366 Msa0597260:CDS
TGCAAAATAGGTTGGATCAG+TGG 0.563033 4_2:-29218708 Msa0597260:CDS
GTTTCAATGGCTTCTTCAAG+TGG 0.563411 4_2:-29219537 Msa0597260:CDS
AGCCATAACTGGAGTAGTAG+AGG 0.573379 4_2:+29218876 None:intergenic
AGAAACGTTCCTGTTGGTGG+TGG 0.578028 4_2:-29219333 Msa0597260:CDS
TGTTGAAGAAGCTCTTGACC+TGG 0.579160 4_2:+29219492 None:intergenic
AAAAGATATTGGACAAGAGG+TGG 0.582761 4_2:-29219363 Msa0597260:CDS
TCAATGGCTTCTTCAAGTGG+TGG 0.584214 4_2:-29219534 Msa0597260:CDS
GTCTGTGGAGCTCAGATCAA+GGG 0.592725 4_2:-29218169 Msa0597260:three_prime_UTR
GGTTGAAAATTTGGGCTGAG+AGG 0.594293 4_2:-29218230 Msa0597260:three_prime_UTR
TAACTGTGTTGATGAGAAAA+CGG 0.594803 4_2:-29219796 Msa0597260:CDS
GATTCAAAAGAAGTGAAACT+AGG 0.595250 4_2:-29218739 Msa0597260:CDS
CATGTGTGTAACTGTGTCTG+TGG 0.600953 4_2:-29218184 Msa0597260:three_prime_UTR
TTCAACTAATGATAACTCCA+TGG 0.607734 4_2:-29218899 Msa0597260:CDS
ACACTTAGAAACGTTCCTGT+TGG 0.611337 4_2:-29219339 Msa0597260:CDS
TACACACATGATGAGAGAAG+AGG 0.615179 4_2:+29218197 None:intergenic
CACTTGTAACAAATTGACAC+AGG 0.623733 4_2:-29219769 Msa0597260:intron
ATTTGGGCTGAGAGGAACCT+CGG 0.625530 4_2:-29218222 Msa0597260:three_prime_UTR
AAAGAAGTGAAACTAGGTGA+AGG 0.626336 4_2:-29218733 Msa0597260:CDS
AGGCCATCAAGCGAAACTCA+AGG 0.626605 4_2:-29219882 None:intergenic
CTTGAAACATAAAACTGACA+GGG 0.645108 4_2:+29218252 None:intergenic
GCTCAGATCAAGGGATATGG+AGG 0.647696 4_2:-29218160 Msa0597260:three_prime_UTR
AACAATATGAATGCTAATGG+TGG 0.654745 4_2:-29218682 Msa0597260:CDS
TGATGAGAGAAGAGGATCCG+AGG 0.663407 4_2:+29218205 None:intergenic
GCTGGTGGTGGAATGAAAGG+TGG 0.695906 4_2:-29218793 Msa0597260:CDS
AATCCAAGACCATTCACCTG+AGG 0.720277 4_2:+29219027 None:intergenic
GTGTTTGATGAATCACAACG+TGG 0.749662 4_2:+29219447 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAATTAGATATTTTTTTAA+TGG + chr4_2:29218345-29218364 None:intergenic 10.0%
!!! TTTTGTTTTTTATTTTCATT+TGG - chr4_2:29219553-29219572 Msa0597260:CDS 10.0%
!!! TTTGTTTTTTATTTTCATTT+GGG - chr4_2:29219554-29219573 Msa0597260:CDS 10.0%
!!! CAAATTAGATATTTTTTTAA+TGG + chr4_2:29218345-29218364 None:intergenic 10.0%
!!! TTTTGTTTTTTATTTTCATT+TGG - chr4_2:29219553-29219572 Msa0597260:CDS 10.0%
!!! TTTGTTTTTTATTTTCATTT+GGG - chr4_2:29219554-29219573 Msa0597260:CDS 10.0%
!!! TTGTTTTTTATTTTCATTTG+GGG - chr4_2:29219555-29219574 Msa0597260:CDS 15.0%
!!! TTGTTTTTTATTTTCATTTG+GGG - chr4_2:29219555-29219574 Msa0597260:CDS 15.0%
!! GAATTATGACCAATATTATT+AGG + chr4_2:29219419-29219438 None:intergenic 20.0%
!! AAAGAAAAGAAGATACTTAA+AGG - chr4_2:29219611-29219630 Msa0597260:intron 20.0%
!! GAATTATGACCAATATTATT+AGG + chr4_2:29219419-29219438 None:intergenic 20.0%
!! AAAGAAAAGAAGATACTTAA+AGG - chr4_2:29219611-29219630 Msa0597260:intron 20.0%
!!! AAATTTTGTTGTTTTCCTCT+TGG - chr4_2:29218252-29218271 Msa0597260:three_prime_UTR 25.0%
!!! AAGAAAGAGAAAGTGTTTTA+AGG + chr4_2:29218312-29218331 None:intergenic 25.0%
!!! TTGTTTTTCTTATCCTTTGT+AGG - chr4_2:29218362-29218381 Msa0597260:three_prime_UTR 25.0%
! TAGAAGCAATATCAAAACTA+TGG + chr4_2:29218764-29218783 None:intergenic 25.0%
! CATAAAGAAGAGAATTGATA+TGG + chr4_2:29218794-29218813 None:intergenic 25.0%
! CATATCAATTCTCTTCTTTA+TGG - chr4_2:29218792-29218811 Msa0597260:CDS 25.0%
! AGTAACAATATGAATGCTAA+TGG - chr4_2:29219257-29219276 Msa0597260:CDS 25.0%
! TATGACCAATATTATTAGGT+TGG + chr4_2:29219415-29219434 None:intergenic 25.0%
!! TCTTTTTCTTAAGCTCTATT+AGG - chr4_2:29219507-29219526 Msa0597260:CDS 25.0%
! ATGTTTCAAGGTTGAAAATT+TGG - chr4_2:29219703-29219722 Msa0597260:intron 25.0%
! TGTTTCAAGGTTGAAAATTT+GGG - chr4_2:29219704-29219723 Msa0597260:intron 25.0%
!!! AAATTTTGTTGTTTTCCTCT+TGG - chr4_2:29218252-29218271 Msa0597260:three_prime_UTR 25.0%
!!! AAGAAAGAGAAAGTGTTTTA+AGG + chr4_2:29218312-29218331 None:intergenic 25.0%
!!! TTGTTTTTCTTATCCTTTGT+AGG - chr4_2:29218362-29218381 Msa0597260:three_prime_UTR 25.0%
! TAGAAGCAATATCAAAACTA+TGG + chr4_2:29218764-29218783 None:intergenic 25.0%
! CATAAAGAAGAGAATTGATA+TGG + chr4_2:29218794-29218813 None:intergenic 25.0%
! CATATCAATTCTCTTCTTTA+TGG - chr4_2:29218792-29218811 Msa0597260:CDS 25.0%
! AGTAACAATATGAATGCTAA+TGG - chr4_2:29219257-29219276 Msa0597260:CDS 25.0%
! TATGACCAATATTATTAGGT+TGG + chr4_2:29219415-29219434 None:intergenic 25.0%
!! TCTTTTTCTTAAGCTCTATT+AGG - chr4_2:29219507-29219526 Msa0597260:CDS 25.0%
! ATGTTTCAAGGTTGAAAATT+TGG - chr4_2:29219703-29219722 Msa0597260:intron 25.0%
! TGTTTCAAGGTTGAAAATTT+GGG - chr4_2:29219704-29219723 Msa0597260:intron 25.0%
! AACACAGTTACCAAACATTT+TGG + chr4_2:29218136-29218155 None:intergenic 30.0%
! TAACTGTGTTGATGAGAAAA+CGG - chr4_2:29218146-29218165 Msa0597260:three_prime_UTR 30.0%
GGAAAACAACAAAATTTGAG+TGG + chr4_2:29218249-29218268 None:intergenic 30.0%
!!! AAAGAGAAAGTGTTTTAAGG+TGG + chr4_2:29218309-29218328 None:intergenic 30.0%
AGATGATCATAAGGTTTCAA+TGG - chr4_2:29218392-29218411 Msa0597260:three_prime_UTR 30.0%
GTAAAGCCTGTAAAAGATAT+TGG - chr4_2:29218568-29218587 Msa0597260:CDS 30.0%
! TCTTGTCCAATATCTTTTAC+AGG + chr4_2:29218577-29218596 None:intergenic 30.0%
TGTAAAAGATATTGGACAAG+AGG - chr4_2:29218576-29218595 Msa0597260:CDS 30.0%
ATGTTTGAAGAAGAGTGATT+TGG + chr4_2:29218663-29218682 None:intergenic 30.0%
AAGAGAATTGATATGGTTTG+AGG + chr4_2:29218787-29218806 None:intergenic 30.0%
!! TTGGATTAGGTTTTTCATCT+GGG - chr4_2:29218931-29218950 Msa0597260:CDS 30.0%
CATCATGATGATTACAGAAA+TGG - chr4_2:29218969-29218988 Msa0597260:CDS 30.0%
! GATGATTACAGAAATGGATT+TGG - chr4_2:29218975-29218994 Msa0597260:CDS 30.0%
TTCAACTAATGATAACTCCA+TGG - chr4_2:29219043-29219062 Msa0597260:CDS 30.0%
GATTCAAAAGAAGTGAAACT+AGG - chr4_2:29219203-29219222 Msa0597260:CDS 30.0%
AACAATATGAATGCTAATGG+TGG - chr4_2:29219260-29219279 Msa0597260:CDS 30.0%
CAGATTCTTCTTCTCTTTAT+TGG - chr4_2:29219321-29219340 Msa0597260:CDS 30.0%
GATCACCAACCTAATAATAT+TGG - chr4_2:29219407-29219426 Msa0597260:CDS 30.0%
!! TATTTTCATTTGGGGTCAAT+TGG - chr4_2:29219563-29219582 Msa0597260:intron 30.0%
!! ATTTTCATTTGGGGTCAATT+GGG - chr4_2:29219564-29219583 Msa0597260:intron 30.0%
CTTGAAACATAAAACTGACA+GGG + chr4_2:29219693-29219712 None:intergenic 30.0%
CTTACTCAATCAATCAACTA+TGG + chr4_2:29219831-29219850 None:intergenic 30.0%
AGTTGATTGATTGAGTAAGT+TGG - chr4_2:29219832-29219851 Msa0597260:five_prime_UTR 30.0%
! AACACAGTTACCAAACATTT+TGG + chr4_2:29218136-29218155 None:intergenic 30.0%
! TAACTGTGTTGATGAGAAAA+CGG - chr4_2:29218146-29218165 Msa0597260:three_prime_UTR 30.0%
GGAAAACAACAAAATTTGAG+TGG + chr4_2:29218249-29218268 None:intergenic 30.0%
!!! AAAGAGAAAGTGTTTTAAGG+TGG + chr4_2:29218309-29218328 None:intergenic 30.0%
AGATGATCATAAGGTTTCAA+TGG - chr4_2:29218392-29218411 Msa0597260:three_prime_UTR 30.0%
GTAAAGCCTGTAAAAGATAT+TGG - chr4_2:29218568-29218587 Msa0597260:CDS 30.0%
! TCTTGTCCAATATCTTTTAC+AGG + chr4_2:29218577-29218596 None:intergenic 30.0%
TGTAAAAGATATTGGACAAG+AGG - chr4_2:29218576-29218595 Msa0597260:CDS 30.0%
ATGTTTGAAGAAGAGTGATT+TGG + chr4_2:29218663-29218682 None:intergenic 30.0%
AAGAGAATTGATATGGTTTG+AGG + chr4_2:29218787-29218806 None:intergenic 30.0%
!! TTGGATTAGGTTTTTCATCT+GGG - chr4_2:29218931-29218950 Msa0597260:CDS 30.0%
CATCATGATGATTACAGAAA+TGG - chr4_2:29218969-29218988 Msa0597260:CDS 30.0%
! GATGATTACAGAAATGGATT+TGG - chr4_2:29218975-29218994 Msa0597260:CDS 30.0%
TTCAACTAATGATAACTCCA+TGG - chr4_2:29219043-29219062 Msa0597260:CDS 30.0%
GATTCAAAAGAAGTGAAACT+AGG - chr4_2:29219203-29219222 Msa0597260:CDS 30.0%
AACAATATGAATGCTAATGG+TGG - chr4_2:29219260-29219279 Msa0597260:CDS 30.0%
CAGATTCTTCTTCTCTTTAT+TGG - chr4_2:29219321-29219340 Msa0597260:CDS 30.0%
GATCACCAACCTAATAATAT+TGG - chr4_2:29219407-29219426 Msa0597260:CDS 30.0%
!! TATTTTCATTTGGGGTCAAT+TGG - chr4_2:29219563-29219582 Msa0597260:intron 30.0%
!! ATTTTCATTTGGGGTCAATT+GGG - chr4_2:29219564-29219583 Msa0597260:intron 30.0%
CTTGAAACATAAAACTGACA+GGG + chr4_2:29219693-29219712 None:intergenic 30.0%
CTTACTCAATCAATCAACTA+TGG + chr4_2:29219831-29219850 None:intergenic 30.0%
AGTTGATTGATTGAGTAAGT+TGG - chr4_2:29219832-29219851 Msa0597260:five_prime_UTR 30.0%
CTCATAGAGACCAAAATGTT+TGG - chr4_2:29218123-29218142 Msa0597260:three_prime_UTR 35.0%
CACTTGTAACAAATTGACAC+AGG - chr4_2:29218173-29218192 Msa0597260:three_prime_UTR 35.0%
TTTCCTCTTGGAACAGAATA+TGG - chr4_2:29218264-29218283 Msa0597260:three_prime_UTR 35.0%
! TTCTTCAAGTGGTGGAAATA+GGG - chr4_2:29218416-29218435 Msa0597260:three_prime_UTR 35.0%
AATAGGGTTATGGAAAAACC+AGG - chr4_2:29218432-29218451 Msa0597260:three_prime_UTR 35.0%
AACAGCAACAACAAGCTTTA+AGG - chr4_2:29218469-29218488 Msa0597260:three_prime_UTR 35.0%
AAAAGATATTGGACAAGAGG+TGG - chr4_2:29218579-29218598 Msa0597260:CDS 35.0%
GGATTTGAATTAGCACTAGT+AGG + chr4_2:29218720-29218739 None:intergenic 35.0%
! TGTTGTTGTTGTTGAGAAGA+AGG + chr4_2:29218741-29218760 None:intergenic 35.0%
! TGAACTTTCCTTTTGCAACA+AGG - chr4_2:29218838-29218857 Msa0597260:CDS 35.0%
GAATTGAACCTTGTTGCAAA+AGG + chr4_2:29218849-29218868 None:intergenic 35.0%
!! ACTAGAGTTTCAAGTTCTTC+TGG - chr4_2:29218870-29218889 Msa0597260:CDS 35.0%
!! CTTGGATTAGGTTTTTCATC+TGG - chr4_2:29218930-29218949 Msa0597260:CDS 35.0%
!! TGGATTAGGTTTTTCATCTG+GGG - chr4_2:29218932-29218951 Msa0597260:CDS 35.0%
AACAACTACAGTTCCATCTT+TGG - chr4_2:29219008-29219027 Msa0597260:CDS 35.0%
AGTAGAAGAAGAACCAAAGA+TGG + chr4_2:29219024-29219043 None:intergenic 35.0%
TTAAGTAGAGAAGCCATAAC+TGG + chr4_2:29219080-29219099 None:intergenic 35.0%
AAAGAAGTGAAACTAGGTGA+AGG - chr4_2:29219209-29219228 Msa0597260:CDS 35.0%
!!! TGTTGCTTTTCAAAACCAGA+TGG - chr4_2:29219283-29219302 Msa0597260:CDS 35.0%
TCAAAACCAGATGGAGAATA+TGG - chr4_2:29219292-29219311 Msa0597260:CDS 35.0%
CAAAACCAGATGGAGAATAT+GGG - chr4_2:29219293-29219312 Msa0597260:CDS 35.0%
ACTATCTAGCTATCTCTTTG+AGG - chr4_2:29219484-29219503 Msa0597260:CDS 35.0%
! TGGGTTTGGTTTACTTACAT+TGG - chr4_2:29219583-29219602 Msa0597260:intron 35.0%
ACTTAAAGGTGAGAGAGTTT+AGG - chr4_2:29219625-29219644 Msa0597260:intron 35.0%
CCTTGAAACATAAAACTGAC+AGG + chr4_2:29219694-29219713 None:intergenic 35.0%
!! CCTGTCAGTTTTATGTTTCA+AGG - chr4_2:29219691-29219710 Msa0597260:intron 35.0%
CTCATAGAGACCAAAATGTT+TGG - chr4_2:29218123-29218142 Msa0597260:three_prime_UTR 35.0%
CACTTGTAACAAATTGACAC+AGG - chr4_2:29218173-29218192 Msa0597260:three_prime_UTR 35.0%
TTTCCTCTTGGAACAGAATA+TGG - chr4_2:29218264-29218283 Msa0597260:three_prime_UTR 35.0%
! TTCTTCAAGTGGTGGAAATA+GGG - chr4_2:29218416-29218435 Msa0597260:three_prime_UTR 35.0%
AATAGGGTTATGGAAAAACC+AGG - chr4_2:29218432-29218451 Msa0597260:three_prime_UTR 35.0%
AACAGCAACAACAAGCTTTA+AGG - chr4_2:29218469-29218488 Msa0597260:three_prime_UTR 35.0%
AAAAGATATTGGACAAGAGG+TGG - chr4_2:29218579-29218598 Msa0597260:CDS 35.0%
GGATTTGAATTAGCACTAGT+AGG + chr4_2:29218720-29218739 None:intergenic 35.0%
! TGTTGTTGTTGTTGAGAAGA+AGG + chr4_2:29218741-29218760 None:intergenic 35.0%
! TGAACTTTCCTTTTGCAACA+AGG - chr4_2:29218838-29218857 Msa0597260:CDS 35.0%
GAATTGAACCTTGTTGCAAA+AGG + chr4_2:29218849-29218868 None:intergenic 35.0%
!! ACTAGAGTTTCAAGTTCTTC+TGG - chr4_2:29218870-29218889 Msa0597260:CDS 35.0%
!! CTTGGATTAGGTTTTTCATC+TGG - chr4_2:29218930-29218949 Msa0597260:CDS 35.0%
!! TGGATTAGGTTTTTCATCTG+GGG - chr4_2:29218932-29218951 Msa0597260:CDS 35.0%
AACAACTACAGTTCCATCTT+TGG - chr4_2:29219008-29219027 Msa0597260:CDS 35.0%
AGTAGAAGAAGAACCAAAGA+TGG + chr4_2:29219024-29219043 None:intergenic 35.0%
TTAAGTAGAGAAGCCATAAC+TGG + chr4_2:29219080-29219099 None:intergenic 35.0%
AAAGAAGTGAAACTAGGTGA+AGG - chr4_2:29219209-29219228 Msa0597260:CDS 35.0%
!!! TGTTGCTTTTCAAAACCAGA+TGG - chr4_2:29219283-29219302 Msa0597260:CDS 35.0%
TCAAAACCAGATGGAGAATA+TGG - chr4_2:29219292-29219311 Msa0597260:CDS 35.0%
CAAAACCAGATGGAGAATAT+GGG - chr4_2:29219293-29219312 Msa0597260:CDS 35.0%
ACTATCTAGCTATCTCTTTG+AGG - chr4_2:29219484-29219503 Msa0597260:CDS 35.0%
! TGGGTTTGGTTTACTTACAT+TGG - chr4_2:29219583-29219602 Msa0597260:intron 35.0%
ACTTAAAGGTGAGAGAGTTT+AGG - chr4_2:29219625-29219644 Msa0597260:intron 35.0%
CCTTGAAACATAAAACTGAC+AGG + chr4_2:29219694-29219713 None:intergenic 35.0%
!! CCTGTCAGTTTTATGTTTCA+AGG - chr4_2:29219691-29219710 Msa0597260:intron 35.0%
GATAGAGAAAGAGAGTGAGA+TGG + chr4_2:29218201-29218220 None:intergenic 40.0%
TCATCTATCTCAGCCTACAA+AGG + chr4_2:29218378-29218397 None:intergenic 40.0%
GGCTGAGATAGATGATCATA+AGG - chr4_2:29218383-29218402 Msa0597260:three_prime_UTR 40.0%
GTTTCAATGGCTTCTTCAAG+TGG - chr4_2:29218405-29218424 Msa0597260:three_prime_UTR 40.0%
! CTTCTTCAAGTGGTGGAAAT+AGG - chr4_2:29218415-29218434 Msa0597260:three_prime_UTR 40.0%
! AAGTGGTGGAAATAGGGTTA+TGG - chr4_2:29218422-29218441 Msa0597260:three_prime_UTR 40.0%
GTGTTTGATGAATCACAACG+TGG + chr4_2:29218498-29218517 None:intergenic 40.0%
ACACTTAGAAACGTTCCTGT+TGG - chr4_2:29218603-29218622 Msa0597260:CDS 40.0%
CTAGTAGGAGTTGAAGAAGA+AGG + chr4_2:29218705-29218724 None:intergenic 40.0%
! TGGTGATCCTTTTCATCATG+AGG - chr4_2:29219169-29219188 Msa0597260:CDS 40.0%
! ATCCTTTTCATCATGAGGCT+GGG - chr4_2:29219174-29219193 Msa0597260:CDS 40.0%
TAGGTGAAGGACTGCAAAAT+AGG - chr4_2:29219222-29219241 Msa0597260:CDS 40.0%
TGAAGGACTGCAAAATAGGT+TGG - chr4_2:29219226-29219245 Msa0597260:CDS 40.0%
! TGCAAAATAGGTTGGATCAG+TGG - chr4_2:29219234-29219253 Msa0597260:CDS 40.0%
ACAAACCCATATTCTCCATC+TGG + chr4_2:29219301-29219320 None:intergenic 40.0%
CAACAGGTTTGAGTAGTGTT+TGG - chr4_2:29219378-29219397 Msa0597260:CDS 40.0%
TACACACATGATGAGAGAAG+AGG + chr4_2:29219748-29219767 None:intergenic 40.0%
GGATATGGAGGTTCTTCATT+TGG - chr4_2:29219794-29219813 Msa0597260:CDS 40.0%
GATAGAGAAAGAGAGTGAGA+TGG + chr4_2:29218201-29218220 None:intergenic 40.0%
TCATCTATCTCAGCCTACAA+AGG + chr4_2:29218378-29218397 None:intergenic 40.0%
GGCTGAGATAGATGATCATA+AGG - chr4_2:29218383-29218402 Msa0597260:three_prime_UTR 40.0%
GTTTCAATGGCTTCTTCAAG+TGG - chr4_2:29218405-29218424 Msa0597260:three_prime_UTR 40.0%
! CTTCTTCAAGTGGTGGAAAT+AGG - chr4_2:29218415-29218434 Msa0597260:three_prime_UTR 40.0%
! AAGTGGTGGAAATAGGGTTA+TGG - chr4_2:29218422-29218441 Msa0597260:three_prime_UTR 40.0%
GTGTTTGATGAATCACAACG+TGG + chr4_2:29218498-29218517 None:intergenic 40.0%
ACACTTAGAAACGTTCCTGT+TGG - chr4_2:29218603-29218622 Msa0597260:CDS 40.0%
CTAGTAGGAGTTGAAGAAGA+AGG + chr4_2:29218705-29218724 None:intergenic 40.0%
! TGGTGATCCTTTTCATCATG+AGG - chr4_2:29219169-29219188 Msa0597260:CDS 40.0%
! ATCCTTTTCATCATGAGGCT+GGG - chr4_2:29219174-29219193 Msa0597260:CDS 40.0%
TAGGTGAAGGACTGCAAAAT+AGG - chr4_2:29219222-29219241 Msa0597260:CDS 40.0%
TGAAGGACTGCAAAATAGGT+TGG - chr4_2:29219226-29219245 Msa0597260:CDS 40.0%
! TGCAAAATAGGTTGGATCAG+TGG - chr4_2:29219234-29219253 Msa0597260:CDS 40.0%
ACAAACCCATATTCTCCATC+TGG + chr4_2:29219301-29219320 None:intergenic 40.0%
CAACAGGTTTGAGTAGTGTT+TGG - chr4_2:29219378-29219397 Msa0597260:CDS 40.0%
TACACACATGATGAGAGAAG+AGG + chr4_2:29219748-29219767 None:intergenic 40.0%
GGATATGGAGGTTCTTCATT+TGG - chr4_2:29219794-29219813 Msa0597260:CDS 40.0%
GATACCAGACAAAGAGCAGT+TGG + chr4_2:29218088-29218107 None:intergenic 45.0%
TGGCCATATTCTGTTCCAAG+AGG + chr4_2:29218270-29218289 None:intergenic 45.0%
!!! GTGGTGCATGTTTTAGTCAG+TGG + chr4_2:29218290-29218309 None:intergenic 45.0%
TCAATGGCTTCTTCAAGTGG+TGG - chr4_2:29218408-29218427 Msa0597260:three_prime_UTR 45.0%
TGTTGAAGAAGCTCTTGACC+TGG + chr4_2:29218453-29218472 None:intergenic 45.0%
!! CAGGCTTTACAGAAGTGTCT+TGG + chr4_2:29218558-29218577 None:intergenic 45.0%
CTTAGAAACGTTCCTGTTGG+TGG - chr4_2:29218606-29218625 Msa0597260:CDS 45.0%
AATCCAAGACCATTCACCTG+AGG + chr4_2:29218918-29218937 None:intergenic 45.0%
! CAGGTGAATGGTCTTGGATT+AGG - chr4_2:29218918-29218937 Msa0597260:CDS 45.0%
AGCCATAACTGGAGTAGTAG+AGG + chr4_2:29219069-29219088 None:intergenic 45.0%
! GATCCTTTTCATCATGAGGC+TGG - chr4_2:29219173-29219192 Msa0597260:CDS 45.0%
ATCCCAGCCTCATGATGAAA+AGG + chr4_2:29219179-29219198 None:intergenic 45.0%
TCATCATGAGGCTGGGATAA+TGG - chr4_2:29219181-29219200 Msa0597260:CDS 45.0%
! TGCTGCAGTGTTGTTGTTGT+TGG + chr4_2:29219360-29219379 None:intergenic 45.0%
AACAACAACACTGCAGCAAC+AGG - chr4_2:29219362-29219381 Msa0597260:CDS 45.0%
! CATTTGGGGTCAATTGGGTT+TGG - chr4_2:29219569-29219588 Msa0597260:intron 45.0%
GGTTGAAAATTTGGGCTGAG+AGG - chr4_2:29219712-29219731 Msa0597260:intron 45.0%
CATGTGTGTAACTGTGTCTG+TGG - chr4_2:29219758-29219777 Msa0597260:intron 45.0%
GATACCAGACAAAGAGCAGT+TGG + chr4_2:29218088-29218107 None:intergenic 45.0%
TGGCCATATTCTGTTCCAAG+AGG + chr4_2:29218270-29218289 None:intergenic 45.0%
!!! GTGGTGCATGTTTTAGTCAG+TGG + chr4_2:29218290-29218309 None:intergenic 45.0%
TCAATGGCTTCTTCAAGTGG+TGG - chr4_2:29218408-29218427 Msa0597260:three_prime_UTR 45.0%
TGTTGAAGAAGCTCTTGACC+TGG + chr4_2:29218453-29218472 None:intergenic 45.0%
!! CAGGCTTTACAGAAGTGTCT+TGG + chr4_2:29218558-29218577 None:intergenic 45.0%
CTTAGAAACGTTCCTGTTGG+TGG - chr4_2:29218606-29218625 Msa0597260:CDS 45.0%
AATCCAAGACCATTCACCTG+AGG + chr4_2:29218918-29218937 None:intergenic 45.0%
! CAGGTGAATGGTCTTGGATT+AGG - chr4_2:29218918-29218937 Msa0597260:CDS 45.0%
AGCCATAACTGGAGTAGTAG+AGG + chr4_2:29219069-29219088 None:intergenic 45.0%
! GATCCTTTTCATCATGAGGC+TGG - chr4_2:29219173-29219192 Msa0597260:CDS 45.0%
ATCCCAGCCTCATGATGAAA+AGG + chr4_2:29219179-29219198 None:intergenic 45.0%
TCATCATGAGGCTGGGATAA+TGG - chr4_2:29219181-29219200 Msa0597260:CDS 45.0%
! TGCTGCAGTGTTGTTGTTGT+TGG + chr4_2:29219360-29219379 None:intergenic 45.0%
AACAACAACACTGCAGCAAC+AGG - chr4_2:29219362-29219381 Msa0597260:CDS 45.0%
! CATTTGGGGTCAATTGGGTT+TGG - chr4_2:29219569-29219588 Msa0597260:intron 45.0%
GGTTGAAAATTTGGGCTGAG+AGG - chr4_2:29219712-29219731 Msa0597260:intron 45.0%
CATGTGTGTAACTGTGTCTG+TGG - chr4_2:29219758-29219777 Msa0597260:intron 45.0%
! AGAAACGTTCCTGTTGGTGG+TGG - chr4_2:29218609-29218628 Msa0597260:CDS 50.0%
TTTCTGCAACCACCACCAAC+AGG + chr4_2:29218621-29218640 None:intergenic 50.0%
AACTGGAGTAGTAGAGGCCA+TGG + chr4_2:29219063-29219082 None:intergenic 50.0%
GGCCTCTACTACTCCAGTTA+TGG - chr4_2:29219064-29219083 Msa0597260:CDS 50.0%
ATTTGGGCTGAGAGGAACCT+CGG - chr4_2:29219720-29219739 Msa0597260:intron 50.0%
TGATGAGAGAAGAGGATCCG+AGG + chr4_2:29219740-29219759 None:intergenic 50.0%
TGTCTGTGGAGCTCAGATCA+AGG - chr4_2:29219772-29219791 Msa0597260:CDS 50.0%
GTCTGTGGAGCTCAGATCAA+GGG - chr4_2:29219773-29219792 Msa0597260:CDS 50.0%
GGAGCTCAGATCAAGGGATA+TGG - chr4_2:29219779-29219798 Msa0597260:CDS 50.0%
GCTCAGATCAAGGGATATGG+AGG - chr4_2:29219782-29219801 Msa0597260:CDS 50.0%
! AGAAACGTTCCTGTTGGTGG+TGG - chr4_2:29218609-29218628 Msa0597260:CDS 50.0%
TTTCTGCAACCACCACCAAC+AGG + chr4_2:29218621-29218640 None:intergenic 50.0%
AACTGGAGTAGTAGAGGCCA+TGG + chr4_2:29219063-29219082 None:intergenic 50.0%
GGCCTCTACTACTCCAGTTA+TGG - chr4_2:29219064-29219083 Msa0597260:CDS 50.0%
ATTTGGGCTGAGAGGAACCT+CGG - chr4_2:29219720-29219739 Msa0597260:intron 50.0%
TGATGAGAGAAGAGGATCCG+AGG + chr4_2:29219740-29219759 None:intergenic 50.0%
TGTCTGTGGAGCTCAGATCA+AGG - chr4_2:29219772-29219791 Msa0597260:CDS 50.0%
GTCTGTGGAGCTCAGATCAA+GGG - chr4_2:29219773-29219792 Msa0597260:CDS 50.0%
GGAGCTCAGATCAAGGGATA+TGG - chr4_2:29219779-29219798 Msa0597260:CDS 50.0%
GCTCAGATCAAGGGATATGG+AGG - chr4_2:29219782-29219801 Msa0597260:CDS 50.0%
TCATCTTCAGCAGCAGCCTC+AGG - chr4_2:29218899-29218918 Msa0597260:CDS 55.0%
CAGCCTCAGGTGAATGGTCT+TGG - chr4_2:29218912-29218931 Msa0597260:CDS 55.0%
!! GCTGCTGGTGGTGGAATGAA+AGG - chr4_2:29219146-29219165 Msa0597260:CDS 55.0%
!! GCTGGTGGTGGAATGAAAGG+TGG - chr4_2:29219149-29219168 Msa0597260:CDS 55.0%
TCATCTTCAGCAGCAGCCTC+AGG - chr4_2:29218899-29218918 Msa0597260:CDS 55.0%
CAGCCTCAGGTGAATGGTCT+TGG - chr4_2:29218912-29218931 Msa0597260:CDS 55.0%
!! GCTGCTGGTGGTGGAATGAA+AGG - chr4_2:29219146-29219165 Msa0597260:CDS 55.0%
!! GCTGGTGGTGGAATGAAAGG+TGG - chr4_2:29219149-29219168 Msa0597260:CDS 55.0%
GGCGCCAACTGCTCTTTGTC+TGG - chr4_2:29218081-29218100 Msa0597260:three_prime_UTR 60.0%
CAGCAGCAGCCTCAGGTGAA+TGG - chr4_2:29218906-29218925 Msa0597260:CDS 60.0%
GGCGCCAACTGCTCTTTGTC+TGG - chr4_2:29218081-29218100 Msa0597260:three_prime_UTR 60.0%
CAGCAGCAGCCTCAGGTGAA+TGG - chr4_2:29218906-29218925 Msa0597260:CDS 60.0%
ACAGCTGCTGCTGCTGCTGC+TGG - chr4_2:29219131-29219150 Msa0597260:CDS 65.0%
ACAGCTGCTGCTGCTGCTGC+TGG - chr4_2:29219131-29219150 Msa0597260:CDS 65.0%
GCTGCTGCTGCTGCTGCTGG+TGG - chr4_2:29219134-29219153 Msa0597260:CDS 70.0%
GCTGCTGCTGCTGCTGGTGG+TGG - chr4_2:29219137-29219156 Msa0597260:CDS 70.0%
GCTGCTGCTGCTGCTGCTGG+TGG - chr4_2:29219134-29219153 Msa0597260:CDS 70.0%
GCTGCTGCTGCTGCTGGTGG+TGG - chr4_2:29219137-29219156 Msa0597260:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 29218070 29219894 29218070 ID=Msa0597260;Name=Msa0597260
chr4_2 mRNA 29218070 29219894 29218070 ID=Msa0597260-mRNA-1;Parent=Msa0597260;Name=Msa0597260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=68|1|1|1|0|0.5|2|437|376
chr4_2 exon 29218070 29219580 29218070 ID=Msa0597260-mRNA-1:exon:7455;Parent=Msa0597260-mRNA-1
chr4_2 exon 29219770 29219894 29219770 ID=Msa0597260-mRNA-1:exon:7454;Parent=Msa0597260-mRNA-1
chr4_2 five_prime_UTR 29219827 29219894 29219827 ID=Msa0597260-mRNA-1:five_prime_utr;Parent=Msa0597260-mRNA-1
chr4_2 CDS 29219770 29219826 29219770 ID=Msa0597260-mRNA-1:cds;Parent=Msa0597260-mRNA-1
chr4_2 CDS 29218507 29219580 29218507 ID=Msa0597260-mRNA-1:cds;Parent=Msa0597260-mRNA-1
chr4_2 three_prime_UTR 29218070 29218506 29218070 ID=Msa0597260-mRNA-1:three_prime_utr;Parent=Msa0597260-mRNA-1
Gene Sequence

>Msa0597260

ATGTTTGGTAACTGTGTTGATGAGAAAACGGTAATCACTTGTAACAAATTGACACAGGCTGAGATAGATGATCATAAGGTTTCAATGGCTTCTTCAAGTGGTGGAAATAGGGTTATGGAAAAACCAGGTCAAGAGCTTCTTCAACAGCAACAACAAGCTTTAAGGTGTCCACGTTGTGATTCATCAAACACTAAATTCTGTTACTACAATAACTACAGTTTATCACAACCAAGACACTTCTGTAAAGCCTGTAAAAGATATTGGACAAGAGGTGGAACACTTAGAAACGTTCCTGTTGGTGGTGGTTGCAGAAAAAACAAACGTCTTAAACGACCAAATCACTCTTCTTCAAACATTGATACTGCTACTGCTTCTCCTTCTTCTTCAACTCCTACTAGTGCTAATTCAAATCCTTCTTCTCAACAACAACAACACCATAGTTTTGATATTGCTTCTACCTCAAACCATATCAATTCTCTTCTTTATGGTAACTCTTCTTGTCATGATGTGATGAACTTTCCTTTTGCAACAAGGTTCAATTCTACTAGAGTTTCAAGTTCTTCTGGTTATGATCATCTTCAGCAGCAGCCTCAGGTGAATGGTCTTGGATTAGGTTTTTCATCTGGGGTAGTTAATCTTAATCATCATGATGATTACAGAAATGGATTTGGTTCAAATAATAACAACTACAGTTCCATCTTTGGTTCTTCTTCTACTTCAACTAATGATAACTCCATGGCCTCTACTACTCCAGTTATGGCTTCTCTACTTAACTCTACACTACTGCAACAGAAATTCATGAGTACAGCTGCTGCTGCTGCTGCTGGTGGTGGAATGAAAGGTGGTGATCCTTTTCATCATGAGGCTGGGATAATGGATTCAAAAGAAGTGAAACTAGGTGAAGGACTGCAAAATAGGTTGGATCAGTGGAGTAACAATATGAATGCTAATGGTGGTGTTGCTTTTCAAAACCAGATGGAGAATATGGGTTTGTCAGATTCTTCTTCTCTTTATTGGAATAACAACAACACCAACAACAACAACACTGCAGCAACAGGTTTGAGTAGTGTTTGGAGTATTGATCACCAACCTAATAATATTGGTCATAATTCAGTTACTTCTCTGATCTAG
Protein sequence

>Msa0597260

MFGNCVDEKTVITCNKLTQAEIDDHKVSMASSSGGNRVMEKPGQELLQQQQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRPNHSSSNIDTATASPSSSTPTSANSNPSSQQQQHHSFDIASTSNHINSLLYGNSSCHDVMNFPFATRFNSTRVSSSSGYDHLQQQPQVNGLGLGFSSGVVNLNHHDDYRNGFGSNNNNYSSIFGSSSTSTNDNSMASTTPVMASLLNSTLLQQKFMSTAAAAAAGGGMKGGDPFHHEAGIMDSKEVKLGEGLQNRLDQWSNNMNANGGVAFQNQMENMGLSDSSSLYWNNNNTNNNNTAATGLSSVWSIDHQPNNIGHNSVTSLI*