AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0598430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598430 MtrunA17_Chr4g0021261 97.329 337 9 0 1 337 1 337 0.0 678
Msa0598430 MtrunA17_Chr4g0070591 38.196 377 166 13 17 336 1 367 6.09e-60 196
Msa0598430 MtrunA17_Chr2g0300511 40.220 363 152 14 25 336 7 355 3.25e-57 189
Msa0598430 MtrunA17_Chr8g0343881 68.067 119 36 2 16 132 1 119 8.17e-48 164
Msa0598430 MtrunA17_Chr5g0409471 46.635 208 84 7 25 218 16 210 8.80e-46 158
Msa0598430 MtrunA17_Chr1g0152191 56.897 116 45 2 25 135 144 259 3.26e-38 144
Msa0598430 MtrunA17_Chr7g0265931 60.714 112 41 3 26 135 79 189 9.77e-38 138
Msa0598430 MtrunA17_Chr3g0127641 46.429 140 57 3 2 141 90 211 5.09e-31 122
Msa0598430 MtrunA17_Chr8g0351521 40.940 149 70 3 14 161 43 174 1.11e-24 103
Msa0598430 MtrunA17_Chr8g0351521 42.105 76 39 1 79 149 293 368 7.68e-13 68.9
Msa0598430 MtrunA17_Chr8g0351291 64.103 39 14 0 88 126 51 89 2.71e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598430 AT3G13960.1 63.303 109 39 1 25 132 16 124 4.05e-42 151
Msa0598430 AT2G36400.1 57.143 119 47 2 26 140 77 195 2.06e-41 149
Msa0598430 AT4G37740.1 52.055 146 47 5 25 155 164 301 8.41e-40 147
Msa0598430 AT2G06200.1 47.647 170 72 4 25 182 6 170 1.40e-37 135
Msa0598430 AT2G06200.2 47.647 170 72 4 25 182 45 209 2.43e-37 135
Msa0598430 AT3G52910.1 56.250 112 44 2 26 132 83 194 2.45e-37 137
Msa0598430 AT5G53660.1 48.361 122 43 2 11 132 49 150 5.31e-29 115
Msa0598430 AT4G24150.3 43.511 131 67 3 9 133 95 224 1.40e-24 103
Msa0598430 AT4G24150.2 43.511 131 67 3 9 133 133 262 2.71e-24 103
Msa0598430 AT2G06200.3 51.000 100 42 2 85 182 4 98 1.02e-23 96.3
Msa0598430 AT4G24150.1 35.484 155 70 2 9 133 133 287 2.07e-22 98.2
Msa0598430 AT2G45480.2 51.961 102 48 1 29 129 28 129 7.32e-22 94.4
Msa0598430 AT2G45480.1 51.961 102 48 1 29 129 26 127 3.37e-21 94.4
Msa0598430 AT2G45480.1 50.000 66 31 2 83 148 299 362 3.91e-13 70.5
Msa0598430 AT2G45480.3 51.961 102 48 1 29 129 28 129 3.45e-21 94.4
Msa0598430 AT2G45480.3 50.000 66 31 2 83 148 301 364 3.89e-13 70.5

Find 124 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTTGATCTTTAAATATA+TGG 0.195661 4_2:-33620734 Msa0598430:CDS
TTCTTTCGTTGAAGCTGATA+TGG 0.198134 4_2:-33617391 Msa0598430:three_prime_UTR
CTTAGGCCATTCGCTGAAAA+AGG 0.223874 4_2:+33617731 None:intergenic
GTGAGTTACTGTTCCTTCTA+TGG 0.233204 4_2:-33619739 Msa0598430:CDS
CGCTCACAGTACTTGGAGTC+TGG 0.273319 4_2:+33619640 None:intergenic
CAATACCTGTATTCTTTACT+TGG 0.293844 4_2:+33619394 None:intergenic
ATCTTTAAATATATGGTTGC+TGG 0.294888 4_2:-33620727 Msa0598430:CDS
TTCTTGAACGGTTGCGGCCA+CGG 0.317225 4_2:+33619608 None:intergenic
AGTTACTTACAGGTAGGAAT+AGG 0.318313 4_2:+33620625 None:intergenic
AGCTTCTTTGCAGAAGCTTC+AGG 0.320264 4_2:-33617954 Msa0598430:CDS
ATCTATGTATCTATCTATCT+AGG 0.323546 4_2:-33621134 Msa0598430:five_prime_UTR
CTACCAAATGCATTTGTTGT+TGG 0.339576 4_2:+33619487 None:intergenic
TCAGTCCTCCTACATCTTCC+TGG 0.350789 4_2:+33619697 None:intergenic
GCCTGTGGAATCACAAACTA+TGG 0.360463 4_2:-33619584 Msa0598430:CDS
TTTCCAGCTGCGACTCCATT+TGG 0.360664 4_2:+33617913 None:intergenic
GTTCAAAATACTACAGGTTC+TGG 0.363646 4_2:-33619463 Msa0598430:CDS
CTTATCCAACTAGATTTGTT+TGG 0.368235 4_2:+33617446 None:intergenic
CTCCTACATCTTCCTGGCTC+CGG 0.374741 4_2:+33619703 None:intergenic
CATTTGTTGTTGGAATGTTC+TGG 0.376571 4_2:+33619497 None:intergenic
AAGAAGGTGGACCCGGAGCC+AGG 0.384375 4_2:-33619715 Msa0598430:CDS
CAGAGAGTCGTGGTCTGGTT+TGG 0.386239 4_2:-33617706 Msa0598430:CDS
GAGTGAAAACTGGAATGAAT+AGG 0.396151 4_2:+33620676 None:intergenic
CAGGCTTTCTTGAACGGTTG+CGG 0.396165 4_2:+33619602 None:intergenic
GGAAGAAAGAGAGTGAAAAC+TGG 0.406980 4_2:+33620666 None:intergenic
ATTCCAACAACAAATGCATT+TGG 0.409994 4_2:-33619490 Msa0598430:CDS
CATCTTGATACCATTCCCTA+TGG 0.426022 4_2:-33619421 Msa0598430:CDS
GTCCACCTTCTTCCCATAGA+AGG 0.426837 4_2:+33619726 None:intergenic
CTTCCATAAAATTGCATTGA+AGG 0.431215 4_2:+33617471 None:intergenic
CTTTGTCGGAAGGAACCATT+TGG 0.431236 4_2:+33621004 None:intergenic
TCCTACATCTTCCTGGCTCC+GGG 0.435042 4_2:+33619704 None:intergenic
AATGGTATCAAGATGATAAT+CGG 0.435391 4_2:+33619429 None:intergenic
TTATCTGGTGAATATGGATC+TGG 0.439682 4_2:-33617789 Msa0598430:CDS
CATGTGGCGCTCACAGTACT+TGG 0.443457 4_2:+33619633 None:intergenic
GACAAAGCTCGATCTGAGTC+TGG 0.444559 4_2:-33620988 Msa0598430:five_prime_UTR
TCTTTCGTTGAAGCTGATAT+GGG 0.446967 4_2:-33617390 Msa0598430:three_prime_UTR
CTGTTCCTTCTATGGGAAGA+AGG 0.447215 4_2:-33619731 Msa0598430:CDS
AGACTCAGATCGAGCTTTGT+CGG 0.451538 4_2:+33620990 None:intergenic
AGTACAAGTATTTGACTACT+TGG 0.455304 4_2:-33621097 Msa0598430:five_prime_UTR
GGTAGTGTTCAAAATACTAC+AGG 0.456240 4_2:-33619469 Msa0598430:CDS
AGGACAAGATCATGTGGAAC+AGG 0.465117 4_2:+33620700 None:intergenic
GCCATAGTTTGTGATTCCAC+AGG 0.467528 4_2:+33619583 None:intergenic
GAAAGAAAATACACGAATAC+AGG 0.467848 4_2:+33617407 None:intergenic
TCTATGTATCTATCTATCTA+GGG 0.468237 4_2:-33621133 Msa0598430:five_prime_UTR
GACCACGACTCTCTGCTCTT+AGG 0.469607 4_2:+33617714 None:intergenic
GTTACTTACAGGTAGGAATA+GGG 0.471074 4_2:+33620626 None:intergenic
TAATTGAACAGGTATCTTCA+AGG 0.477874 4_2:-33618002 Msa0598430:intron
GGTGTTGATTGTGTTATGTC+CGG 0.478214 4_2:+33621045 None:intergenic
TGTGGAGAATGCTGTTTGGT+TGG 0.482035 4_2:+33617671 None:intergenic
TGTACAACCTCGTAGAACTC+TGG 0.486602 4_2:-33617301 Msa0598430:three_prime_UTR
TTCTTTACTTGGAATCCCAT+AGG 0.487767 4_2:+33619405 None:intergenic
TAAAATTGCATTGAAGGTCC+TGG 0.487886 4_2:+33617477 None:intergenic
GCTGGTAGCAGCAGCAGAGC+TGG 0.488737 4_2:-33619526 Msa0598430:CDS
ATTCCACAGGCTTTCTTGAA+CGG 0.489637 4_2:+33619596 None:intergenic
TCTCCAAATGGAGTCGCAGC+TGG 0.490440 4_2:-33617916 Msa0598430:CDS
TGAGTTACTGTTCCTTCTAT+GGG 0.497953 4_2:-33619738 Msa0598430:CDS
AGGGTGGTGAAAGAAGTTAT+TGG 0.499297 4_2:+33620645 None:intergenic
CCAAAACAAAACAAACCAAA+TGG 0.500345 4_2:-33621019 Msa0598430:five_prime_UTR
AGACAACAAGGGTCTCCAAA+TGG 0.506033 4_2:-33617928 Msa0598430:CDS
AAGAGCAGAGAGTCGTGGTC+TGG 0.507183 4_2:-33617711 Msa0598430:CDS
GTACAACCTCGTAGAACTCT+GGG 0.508338 4_2:-33617300 Msa0598430:three_prime_UTR
CTATGGGAAGAAGGTGGACC+CGG 0.514809 4_2:-33619722 Msa0598430:CDS
GAGTTGTGGAGAATGCTGTT+TGG 0.516076 4_2:+33617667 None:intergenic
CGGAGGTGTAGGGATGATGA+TGG 0.523373 4_2:-33620812 Msa0598430:CDS
AAGGACCAAACAAATCTAGT+TGG 0.523513 4_2:-33617451 Msa0598430:three_prime_UTR
AGTAGTAACAACGGAGGTGT+AGG 0.523982 4_2:-33620823 Msa0598430:CDS
GGATTCCAAGTAAAGAATAC+AGG 0.527798 4_2:-33619399 Msa0598430:intron
TCTTTACTTGGAATCCCATA+GGG 0.529110 4_2:+33619406 None:intergenic
GGAAGATGTAGGAGGACTGA+TGG 0.529508 4_2:-33619694 Msa0598430:CDS
TGGAGAAGCTGTGAAGGAAG+AGG 0.531350 4_2:-33617769 Msa0598430:CDS
GGTTGCGGCCACGGTGCATG+TGG 0.541009 4_2:+33619617 None:intergenic
CTTCACAGTGTCTCAGTGGC+AGG 0.545162 4_2:-33620770 Msa0598430:CDS
GGGATAATCACTTTGCAACA+TGG 0.547856 4_2:+33617824 None:intergenic
ACTTGGAATCCCATAGGGAA+TGG 0.549125 4_2:+33619411 None:intergenic
AGCTTCAGGAGGAGACAACA+AGG 0.549332 4_2:-33617940 Msa0598430:CDS
GATAACTAGAGCAGTCATCC+AGG 0.555954 4_2:-33617495 Msa0598430:exon
ACACATAAAGATGAGTAGTA+AGG 0.556136 4_2:+33617321 None:intergenic
GTCAGACGATGACATAGGAA+TGG 0.557702 4_2:+33617632 None:intergenic
GCTCACAGTACTTGGAGTCT+GGG 0.561352 4_2:+33619641 None:intergenic
AAAGATGAGTAGTAAGGTGT+TGG 0.562688 4_2:+33617327 None:intergenic
ATACTAACATAGCATCCATC+CGG 0.569488 4_2:-33621064 Msa0598430:five_prime_UTR
ATCTTGATACCATTCCCTAT+GGG 0.573222 4_2:-33619420 Msa0598430:CDS
TCTTCAAGGTCTTAAATCTG+AGG 0.573656 4_2:-33617988 Msa0598430:CDS
TGGATCTGGAGAAGCTGTGA+AGG 0.577779 4_2:-33617775 Msa0598430:CDS
GGAGAAGCTGTGAAGGAAGA+GGG 0.582664 4_2:-33617768 Msa0598430:CDS
GTAGTAACAACGGAGGTGTA+GGG 0.587459 4_2:-33620822 Msa0598430:CDS
TTCTTTGCAGAAGCTTCAGG+AGG 0.588543 4_2:-33617951 Msa0598430:CDS
GAGAAGTCAGACGATGACAT+AGG 0.589480 4_2:+33617627 None:intergenic
GTGACATCGCTAACTGTCGC+TGG 0.594065 4_2:-33619544 Msa0598430:CDS
AAGATGATAATCGGCACGGT+CGG 0.596697 4_2:+33619438 None:intergenic
TCAGATCGAGCTTTGTCGGA+AGG 0.597590 4_2:+33620994 None:intergenic
GGATATTGAAAGTTGAGTTG+TGG 0.598447 4_2:+33617653 None:intergenic
CTTCAAGGTCTTAAATCTGA+GGG 0.600678 4_2:-33617987 Msa0598430:CDS
TTGATTGTGTTATGTCCGGA+TGG 0.601053 4_2:+33621049 None:intergenic
AAAAGTATGAATAGCTCTGG+TGG 0.606971 4_2:-33620850 Msa0598430:exon
GAAAACTGGAATGAATAGGA+AGG 0.611240 4_2:+33620680 None:intergenic
GGGAGTTGAAGGGTACAATG+AGG 0.616424 4_2:-33621169 None:intergenic
CACCCTTCACAGTGTCTCAG+TGG 0.621198 4_2:-33620774 Msa0598430:CDS
AGTATGAATAGCTCTGGTGG+TGG 0.634205 4_2:-33620847 Msa0598430:CDS
CAACCGTTCAAGAAAGCCTG+TGG 0.634486 4_2:-33619599 Msa0598430:CDS
CGGAGCCAGGAAGATGTAGG+AGG 0.644072 4_2:-33619702 Msa0598430:CDS
CTATGTATCTATCTATCTAG+GGG 0.646979 4_2:-33621132 Msa0598430:five_prime_UTR
ACCCGGAGCCAGGAAGATGT+AGG 0.647650 4_2:-33619705 Msa0598430:CDS
TGCCACTGAGACACTGTGAA+GGG 0.647925 4_2:+33620772 None:intergenic
GTGTGGCGACTGAGAGCTTG+TGG 0.650050 4_2:+33617602 None:intergenic
GGAGGTGTAGGGATGATGAT+GGG 0.651275 4_2:-33620811 Msa0598430:CDS
TTCCTTCTATGGGAAGAAGG+TGG 0.660445 4_2:-33619728 Msa0598430:CDS
GGCCTAAGAGCAGAGAGTCG+TGG 0.662812 4_2:-33617716 Msa0598430:CDS
ACAAGCTCTCAGTCGCCACA+CGG 0.663120 4_2:-33617600 Msa0598430:intron
ATAGGAAGGACAAGATCATG+TGG 0.664951 4_2:+33620694 None:intergenic
CTGCCACTGAGACACTGTGA+AGG 0.667964 4_2:+33620771 None:intergenic
ACAACTTTATGTAACATCAG+CGG 0.668849 4_2:-33617366 Msa0598430:three_prime_UTR
AGTCGCAGCTGGAAAACACA+TGG 0.677391 4_2:-33617905 Msa0598430:CDS
GCAACTCTAGTTGACATCAG+AGG 0.686427 4_2:+33617882 None:intergenic
CAAGGTCTTAAATCTGAGGG+TGG 0.691896 4_2:-33617984 Msa0598430:CDS
GCTTCAGGAGGAGACAACAA+GGG 0.694886 4_2:-33617939 Msa0598430:CDS
GGTGGTGGCAGTAGTAACAA+CGG 0.699810 4_2:-33620832 Msa0598430:CDS
TATGTATCTATCTATCTAGG+GGG 0.702581 4_2:-33621131 Msa0598430:five_prime_UTR
ACTTACAGGTAGGAATAGGG+TGG 0.711937 4_2:+33620629 None:intergenic
TATCAAGATGATAATCGGCA+CGG 0.713801 4_2:+33619434 None:intergenic
GACAGTTAGCGATGTCACAG+TGG 0.746561 4_2:+33619549 None:intergenic
TACAACCTCGTAGAACTCTG+GGG 0.747326 4_2:-33617299 Msa0598430:three_prime_UTR
TGTGAGCGCCACATGCACCG+TGG 0.761510 4_2:-33619625 Msa0598430:CDS
GGTGGCAGTAGTAACAACGG+AGG 0.768714 4_2:-33620829 Msa0598430:CDS
GAATGCCCCAGAGTTCTACG+AGG 0.797728 4_2:+33617294 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATATAACTTCAT+TGG + chr4_2:33617949-33617968 None:intergenic 10.0%
!!! TTATATTAAAACAACTTTTT+TGG - chr4_2:33619622-33619641 Msa0598430:CDS 10.0%
!! ATAATACTATGTTTATAACA+TGG - chr4_2:33619207-33619226 Msa0598430:intron 15.0%
!!! TTTCTTTTCAATATTGAAAA+AGG - chr4_2:33619342-33619361 Msa0598430:intron 15.0%
!!! TTCTTTTCAATATTGAAAAA+GGG - chr4_2:33619343-33619362 Msa0598430:intron 15.0%
!! TAATATAAACTTCATATTCT+AGG + chr4_2:33619610-33619629 None:intergenic 15.0%
!!! AGCTTTGATCTTTAAATATA+TGG - chr4_2:33617657-33617676 Msa0598430:CDS 20.0%
!! AACTTTAGTAATAACTTCAT+TGG + chr4_2:33618100-33618119 None:intergenic 20.0%
!! TTTGTTGCATTATTCAATTA+TGG - chr4_2:33618505-33618524 Msa0598430:intron 20.0%
!! TTGAAAAGAAAATTGTAAGA+AGG + chr4_2:33619333-33619352 None:intergenic 20.0%
!! TTCATTAATTTCTGACAAAA+GGG - chr4_2:33619795-33619814 Msa0598430:intron 20.0%
!! GAAACTAAATGAAAAAACAA+AGG + chr4_2:33620128-33620147 None:intergenic 20.0%
!! TTTCCTTTCAATCAATTTAA+TGG - chr4_2:33620144-33620163 Msa0598430:intron 20.0%
!! TTCCTTTCAATCAATTTAAT+GGG - chr4_2:33620145-33620164 Msa0598430:intron 20.0%
!! CTTGTATAATTAAATATGAC+TGG - chr4_2:33620292-33620311 Msa0598430:intron 20.0%
! ATCTATGTATCTATCTATCT+AGG - chr4_2:33617257-33617276 Msa0598430:three_prime_UTR 25.0%
! TCTATGTATCTATCTATCTA+GGG - chr4_2:33617258-33617277 Msa0598430:three_prime_UTR 25.0%
! ATCTTTAAATATATGGTTGC+TGG - chr4_2:33617664-33617683 Msa0598430:CDS 25.0%
! TTAGTTAGTTAGTTACTTAC+AGG + chr4_2:33617779-33617798 None:intergenic 25.0%
!! AAAGTTAGTTAGTTGATTCT+TGG - chr4_2:33618114-33618133 Msa0598430:intron 25.0%
! ATATGTGTGCAAACAATAAA+GGG + chr4_2:33618204-33618223 None:intergenic 25.0%
! TTGAATGTAACTACTTGTAT+TGG - chr4_2:33618283-33618302 Msa0598430:intron 25.0%
!! TGAATGTTTCTTATTGATTG+TGG - chr4_2:33618561-33618580 Msa0598430:intron 25.0%
! AATGGTATCAAGATGATAAT+CGG + chr4_2:33618965-33618984 None:intergenic 25.0%
! GTGAAATGATACACATAATA+AGG + chr4_2:33619027-33619046 None:intergenic 25.0%
!! ACTTGTTGATTGCTTTAAAT+TGG - chr4_2:33619047-33619066 Msa0598430:intron 25.0%
!!! ATACTTTTAACTGAAGAGAA+TGG - chr4_2:33619073-33619092 Msa0598430:intron 25.0%
! CATAGAAAAAATAACAGTTG+AGG + chr4_2:33619391-33619410 None:intergenic 25.0%
! TTGTTCTCTATATTTGTGTT+GGG - chr4_2:33619426-33619445 Msa0598430:CDS 25.0%
! GAATAAATAAATGCATGGAA+AGG + chr4_2:33619588-33619607 None:intergenic 25.0%
! TCTAGGAATAAATAAATGCA+TGG + chr4_2:33619593-33619612 None:intergenic 25.0%
!!! CATTTTAGCATGTTAATATG+TGG - chr4_2:33619668-33619687 Msa0598430:CDS 25.0%
!! CTTTTGTCAGAAATTAATGA+AGG + chr4_2:33619796-33619815 None:intergenic 25.0%
! CTTCATTAATTTCTGACAAA+AGG - chr4_2:33619794-33619813 Msa0598430:intron 25.0%
! TCTTTGAATAAAATCAGTGT+CGG + chr4_2:33620060-33620079 None:intergenic 25.0%
! AAGCAAAAAATTATGCGAAA+AGG - chr4_2:33620315-33620334 Msa0598430:intron 25.0%
! AAGATACCTGTTCAATTAAA+GGG + chr4_2:33620387-33620406 None:intergenic 25.0%
! ACCAGATAAAAATGAATGTT+GGG + chr4_2:33620591-33620610 None:intergenic 25.0%
!!! TCATTTTTATCTGGTGAATA+TGG - chr4_2:33620596-33620615 Msa0598430:intron 25.0%
! ATCTGCAACGATATAATTAT+GGG + chr4_2:33620879-33620898 None:intergenic 25.0%
! TATCTGCAACGATATAATTA+TGG + chr4_2:33620880-33620899 None:intergenic 25.0%
CTATGTATCTATCTATCTAG+GGG - chr4_2:33617259-33617278 Msa0598430:three_prime_UTR 30.0%
TATGTATCTATCTATCTAGG+GGG - chr4_2:33617260-33617279 Msa0598430:three_prime_UTR 30.0%
AGTACAAGTATTTGACTACT+TGG - chr4_2:33617294-33617313 Msa0598430:three_prime_UTR 30.0%
!!! TGGTTTGTTTTGTTTTGGTT+TGG + chr4_2:33617370-33617389 None:intergenic 30.0%
!!! CCATTTGGTTTGTTTTGTTT+TGG + chr4_2:33617375-33617394 None:intergenic 30.0%
CCAAAACAAAACAAACCAAA+TGG - chr4_2:33617372-33617391 Msa0598430:three_prime_UTR 30.0%
! AGAAAAAGTATGAATAGCTC+TGG - chr4_2:33617538-33617557 Msa0598430:intron 30.0%
TTAGTTAGTTACTTACAGGT+AGG + chr4_2:33617775-33617794 None:intergenic 30.0%
CATCAAATATGCAGCTATTA+GGG + chr4_2:33617896-33617915 None:intergenic 30.0%
TCATCAAATATGCAGCTATT+AGG + chr4_2:33617897-33617916 None:intergenic 30.0%
CATATGTGTGCAAACAATAA+AGG + chr4_2:33618205-33618224 None:intergenic 30.0%
ATGCCTTTAATCCAAAATGT+CGG - chr4_2:33618319-33618338 Msa0598430:intron 30.0%
! TTTTCCACTATCTGTCAATT+TGG - chr4_2:33618379-33618398 Msa0598430:intron 30.0%
AAATCCAAATTGACAGATAG+TGG + chr4_2:33618386-33618405 None:intergenic 30.0%
TTGTAAGCAGTAAAAGCTAT+AGG + chr4_2:33618540-33618559 None:intergenic 30.0%
! TTTCTTATTGATTGTGGTCT+AGG - chr4_2:33618567-33618586 Msa0598430:intron 30.0%
! TTCTTATTGATTGTGGTCTA+GGG - chr4_2:33618568-33618587 Msa0598430:intron 30.0%
GTAAATTTACAAGCACAGTA+AGG + chr4_2:33618631-33618650 None:intergenic 30.0%
ATTCCAACAACAAATGCATT+TGG - chr4_2:33618901-33618920 Msa0598430:intron 30.0%
CAATACCTGTATTCTTTACT+TGG + chr4_2:33619000-33619019 None:intergenic 30.0%
TAAACTCAACTGCACAATAA+TGG + chr4_2:33619177-33619196 None:intergenic 30.0%
! CATGGATTTCTAATTTTCCA+CGG - chr4_2:33619225-33619244 Msa0598430:intron 30.0%
CAACAATTTACACAAAGATG+TGG + chr4_2:33619270-33619289 None:intergenic 30.0%
GAAAGAATGACAAGAGTTAT+TGG - chr4_2:33619289-33619308 Msa0598430:intron 30.0%
! AGTTATTGGTTACTTTGCTT+TGG - chr4_2:33619303-33619322 Msa0598430:intron 30.0%
! GTTATTGGTTACTTTGCTTT+GGG - chr4_2:33619304-33619323 Msa0598430:intron 30.0%
CTTGTTCTCTATATTTGTGT+TGG - chr4_2:33619425-33619444 Msa0598430:CDS 30.0%
TCAAAATGTCATTCGAAAAG+TGG + chr4_2:33619518-33619537 None:intergenic 30.0%
!! ACATTTTGACAAAATTGCGA+GGG - chr4_2:33619529-33619548 Msa0598430:CDS 30.0%
! TAATTTGCAGCTAGATTTGA+AGG + chr4_2:33619845-33619864 None:intergenic 30.0%
TGACGTCAGACAAATTTATT+TGG - chr4_2:33620021-33620040 Msa0598430:intron 30.0%
GACGTCAGACAAATTTATTT+GGG - chr4_2:33620022-33620041 Msa0598430:intron 30.0%
ATAAAAGCTTGAACTTCTGA+TGG - chr4_2:33620093-33620112 Msa0598430:intron 30.0%
GTCCCATTAAATTGATTGAA+AGG + chr4_2:33620150-33620169 None:intergenic 30.0%
AATTTAATGGGACCTTGATT+GGG - chr4_2:33620157-33620176 Msa0598430:intron 30.0%
CAAACGAAAAATCATGAAGA+TGG + chr4_2:33620227-33620246 None:intergenic 30.0%
! TTCGTTTGTAGTATTGAACA+TGG - chr4_2:33620239-33620258 Msa0598430:intron 30.0%
CACGTCATGTAGTATAAAAA+AGG + chr4_2:33620343-33620362 None:intergenic 30.0%
!!! CTTTTTTATACTACATGACG+TGG - chr4_2:33620341-33620360 Msa0598430:intron 30.0%
AGATACCTGTTCAATTAAAG+GGG + chr4_2:33620386-33620405 None:intergenic 30.0%
GAAGATACCTGTTCAATTAA+AGG + chr4_2:33620388-33620407 None:intergenic 30.0%
TAATTGAACAGGTATCTTCA+AGG - chr4_2:33620389-33620408 Msa0598430:intron 30.0%
!! TGATTTTGATGCAGAAAAAG+AGG + chr4_2:33620534-33620553 None:intergenic 30.0%
CCAGATAAAAATGAATGTTG+GGG + chr4_2:33620590-33620609 None:intergenic 30.0%
CACCAGATAAAAATGAATGT+TGG + chr4_2:33620592-33620611 None:intergenic 30.0%
! CGGTGAGATATATTTAAGTT+CGG - chr4_2:33620811-33620830 Msa0598430:CDS 30.0%
CTTCCATAAAATTGCATTGA+AGG + chr4_2:33620923-33620942 None:intergenic 30.0%
! CTTCAATGCAATTTTATGGA+AGG - chr4_2:33620921-33620940 Msa0598430:five_prime_UTR 30.0%
! CTTATCCAACTAGATTTGTT+TGG + chr4_2:33620948-33620967 None:intergenic 30.0%
GAAAGAAAATACACGAATAC+AGG + chr4_2:33620987-33621006 None:intergenic 30.0%
ACAACTTTATGTAACATCAG+CGG - chr4_2:33621025-33621044 Msa0598430:five_prime_UTR 30.0%
ACACATAAAGATGAGTAGTA+AGG + chr4_2:33621073-33621092 None:intergenic 30.0%
ATACTAACATAGCATCCATC+CGG - chr4_2:33617327-33617346 Msa0598430:three_prime_UTR 35.0%
!! AAAAGTATGAATAGCTCTGG+TGG - chr4_2:33617541-33617560 Msa0598430:intron 35.0%
GAAAACTGGAATGAATAGGA+AGG + chr4_2:33617714-33617733 None:intergenic 35.0%
GAGTGAAAACTGGAATGAAT+AGG + chr4_2:33617718-33617737 None:intergenic 35.0%
GTTACTTACAGGTAGGAATA+GGG + chr4_2:33617768-33617787 None:intergenic 35.0%
AGTTACTTACAGGTAGGAAT+AGG + chr4_2:33617769-33617788 None:intergenic 35.0%
ATAACTTCATTGGATCTCTC+AGG + chr4_2:33617939-33617958 None:intergenic 35.0%
!! GATTATCTCTGGAGTCAATT+TGG + chr4_2:33618000-33618019 None:intergenic 35.0%
!! TCTTGGCTTGTTACTTTAGA+AGG - chr4_2:33618131-33618150 Msa0598430:intron 35.0%
!! CTTGGCTTGTTACTTTAGAA+GGG - chr4_2:33618132-33618151 Msa0598430:intron 35.0%
!! TGACAGATAGTGGAAAATGA+TGG + chr4_2:33618376-33618395 None:intergenic 35.0%
ATCTATGTCTCTCTCAGAAA+TGG + chr4_2:33618415-33618434 None:intergenic 35.0%
TGAGTTACTGTTCCTTCTAT+GGG - chr4_2:33618653-33618672 Msa0598430:intron 35.0%
!! CATTTGTTGTTGGAATGTTC+TGG + chr4_2:33618897-33618916 None:intergenic 35.0%
!! CTACCAAATGCATTTGTTGT+TGG + chr4_2:33618907-33618926 None:intergenic 35.0%
GGTAGTGTTCAAAATACTAC+AGG - chr4_2:33618922-33618941 Msa0598430:intron 35.0%
GTTCAAAATACTACAGGTTC+TGG - chr4_2:33618928-33618947 Msa0598430:intron 35.0%
TATCAAGATGATAATCGGCA+CGG + chr4_2:33618960-33618979 None:intergenic 35.0%
ATCTTGATACCATTCCCTAT+GGG - chr4_2:33618971-33618990 Msa0598430:intron 35.0%
TCTTTACTTGGAATCCCATA+GGG + chr4_2:33618988-33619007 None:intergenic 35.0%
TTCTTTACTTGGAATCCCAT+AGG + chr4_2:33618989-33619008 None:intergenic 35.0%
GGATTCCAAGTAAAGAATAC+AGG - chr4_2:33618992-33619011 Msa0598430:intron 35.0%
!! TCATGGAGATCTACTGATTT+CGG + chr4_2:33619485-33619504 None:intergenic 35.0%
TGTCATTCGAAAAGTGGTTT+GGG + chr4_2:33619512-33619531 None:intergenic 35.0%
ATGTCATTCGAAAAGTGGTT+TGG + chr4_2:33619513-33619532 None:intergenic 35.0%
!! GACATTTTGACAAAATTGCG+AGG - chr4_2:33619528-33619547 Msa0598430:CDS 35.0%
TCAAAGAGAGCAACATGATA+TGG + chr4_2:33619885-33619904 None:intergenic 35.0%
CAATTTAATGGGACCTTGAT+TGG - chr4_2:33620156-33620175 Msa0598430:intron 35.0%
ATGATGAACTTACCCAATCA+AGG + chr4_2:33620172-33620191 None:intergenic 35.0%
GATTGGGTAAGTTCATCATA+TGG - chr4_2:33620173-33620192 Msa0598430:intron 35.0%
TCTTCAAGGTCTTAAATCTG+AGG - chr4_2:33620403-33620422 Msa0598430:intron 35.0%
CTTCAAGGTCTTAAATCTGA+GGG - chr4_2:33620404-33620423 Msa0598430:intron 35.0%
!! CCCCAACATTCATTTTTATC+TGG - chr4_2:33620587-33620606 Msa0598430:intron 35.0%
TTATCTGGTGAATATGGATC+TGG - chr4_2:33620602-33620621 Msa0598430:intron 35.0%
! GGATATTGAAAGTTGAGTTG+TGG + chr4_2:33620741-33620760 None:intergenic 35.0%
CTTAAATATATCTCACCGTG+TGG + chr4_2:33620809-33620828 None:intergenic 35.0%
TAAAATTGCATTGAAGGTCC+TGG + chr4_2:33620917-33620936 None:intergenic 35.0%
! GGACCTTCAATGCAATTTTA+TGG - chr4_2:33620917-33620936 Msa0598430:five_prime_UTR 35.0%
AAGGACCAAACAAATCTAGT+TGG - chr4_2:33620940-33620959 Msa0598430:five_prime_UTR 35.0%
TTCTTTCGTTGAAGCTGATA+TGG - chr4_2:33621000-33621019 Msa0598430:five_prime_UTR 35.0%
TCTTTCGTTGAAGCTGATAT+GGG - chr4_2:33621001-33621020 Msa0598430:five_prime_UTR 35.0%
AAAGATGAGTAGTAAGGTGT+TGG + chr4_2:33621067-33621086 None:intergenic 35.0%
TTGATTGTGTTATGTCCGGA+TGG + chr4_2:33617345-33617364 None:intergenic 40.0%
!! GGTGTTGATTGTGTTATGTC+CGG + chr4_2:33617349-33617368 None:intergenic 40.0%
ATAGGAAGGACAAGATCATG+TGG + chr4_2:33617700-33617719 None:intergenic 40.0%
GGAAGAAAGAGAGTGAAAAC+TGG + chr4_2:33617728-33617747 None:intergenic 40.0%
AGGGTGGTGAAAGAAGTTAT+TGG + chr4_2:33617749-33617768 None:intergenic 40.0%
TTGGATCTCTCAGGAACAAA+GGG + chr4_2:33617930-33617949 None:intergenic 40.0%
ATTGGATCTCTCAGGAACAA+AGG + chr4_2:33617931-33617950 None:intergenic 40.0%
!! TACTTGTATTGGTGTCGTGT+CGG - chr4_2:33618294-33618313 Msa0598430:intron 40.0%
!! AATGTTTTGCGCCGACATTT+TGG + chr4_2:33618333-33618352 None:intergenic 40.0%
GTGAGTTACTGTTCCTTCTA+TGG - chr4_2:33618652-33618671 Msa0598430:intron 40.0%
!! AAAAAAGTGGAGGTGCTCTA+AGG - chr4_2:33618720-33618739 Msa0598430:intron 40.0%
ATTCCACAGGCTTTCTTGAA+CGG + chr4_2:33618798-33618817 None:intergenic 40.0%
CATCTTGATACCATTCCCTA+TGG - chr4_2:33618970-33618989 Msa0598430:intron 40.0%
! AAAGTGGTTTGGGTGATTCA+TGG + chr4_2:33619502-33619521 None:intergenic 40.0%
AAAATTGCGAGGGAGAAAGA+CGG - chr4_2:33619539-33619558 Msa0598430:CDS 40.0%
GGGATAATCACTTTGCAACA+TGG + chr4_2:33620570-33620589 None:intergenic 40.0%
TTAGGCCATTCGCTGAAAAA+GGG + chr4_2:33620662-33620681 None:intergenic 40.0%
TCTATCTAGGGGGAGTTGAA+TGG - chr4_2:33617270-33617289 Msa0598430:three_prime_UTR 45.0%
CTTTGTCGGAAGGAACCATT+TGG + chr4_2:33617390-33617409 None:intergenic 45.0%
! AGACTCAGATCGAGCTTTGT+CGG + chr4_2:33617404-33617423 None:intergenic 45.0%
!! AGTATGAATAGCTCTGGTGG+TGG - chr4_2:33617544-33617563 Msa0598430:intron 45.0%
! AGTAGTAACAACGGAGGTGT+AGG - chr4_2:33617568-33617587 Msa0598430:intron 45.0%
! GTAGTAACAACGGAGGTGTA+GGG - chr4_2:33617569-33617588 Msa0598430:intron 45.0%
AGGACAAGATCATGTGGAAC+AGG + chr4_2:33617694-33617713 None:intergenic 45.0%
ACTTACAGGTAGGAATAGGG+TGG + chr4_2:33617765-33617784 None:intergenic 45.0%
TGGATCTCTCAGGAACAAAG+GGG + chr4_2:33617929-33617948 None:intergenic 45.0%
GTCTCAGGTTCGATTATCTC+TGG + chr4_2:33618011-33618030 None:intergenic 45.0%
ATACTCCTTCTCAAGGTCTC+AGG + chr4_2:33618026-33618045 None:intergenic 45.0%
! TGGGAGTATACTCCTTCTCA+AGG + chr4_2:33618033-33618052 None:intergenic 45.0%
! TTGAGAAGGAGTATACTCCC+AGG - chr4_2:33618032-33618051 Msa0598430:intron 45.0%
CATTGGATCGTAACCCACTT+GGG + chr4_2:33618083-33618102 None:intergenic 45.0%
TCATTGGATCGTAACCCACT+TGG + chr4_2:33618084-33618103 None:intergenic 45.0%
!! GCGCCGACATTTTGGATTAA+AGG + chr4_2:33618325-33618344 None:intergenic 45.0%
! CTAGGGTGTGTCTGAAATGT+TGG - chr4_2:33618585-33618604 Msa0598430:intron 45.0%
CTGTTCCTTCTATGGGAAGA+AGG - chr4_2:33618660-33618679 Msa0598430:intron 45.0%
TTCCTTCTATGGGAAGAAGG+TGG - chr4_2:33618663-33618682 Msa0598430:intron 45.0%
GGAGGACTGATGGAAAAAAG+TGG - chr4_2:33618707-33618726 Msa0598430:intron 45.0%
GGACTGATGGAAAAAAGTGG+AGG - chr4_2:33618710-33618729 Msa0598430:intron 45.0%
GCCTGTGGAATCACAAACTA+TGG - chr4_2:33618807-33618826 Msa0598430:intron 45.0%
! GCCATAGTTTGTGATTCCAC+AGG + chr4_2:33618811-33618830 None:intergenic 45.0%
AAGATGATAATCGGCACGGT+CGG + chr4_2:33618956-33618975 None:intergenic 45.0%
ACTTGGAATCCCATAGGGAA+TGG + chr4_2:33618983-33619002 None:intergenic 45.0%
CTAATGCTTGTGAATCTCCG+TGG + chr4_2:33619245-33619264 None:intergenic 45.0%
TTATCCCCATGTGACAGCTA+TGG + chr4_2:33619710-33619729 None:intergenic 45.0%
TCACATGGGGATAATGAGCA+AGG - chr4_2:33619716-33619735 Msa0598430:CDS 45.0%
ATGGGGATAATGAGCAAGGT+AGG - chr4_2:33619720-33619739 Msa0598430:CDS 45.0%
GGGGCGACAAATAATGATGT+TGG + chr4_2:33620367-33620386 None:intergenic 45.0%
TGTCGCCCCTTTAATTGAAC+AGG - chr4_2:33620378-33620397 Msa0598430:intron 45.0%
CAAGGTCTTAAATCTGAGGG+TGG - chr4_2:33620407-33620426 Msa0598430:intron 45.0%
AGCTTCTTTGCAGAAGCTTC+AGG - chr4_2:33620437-33620456 Msa0598430:intron 45.0%
TTCTTTGCAGAAGCTTCAGG+AGG - chr4_2:33620440-33620459 Msa0598430:intron 45.0%
AGACAACAAGGGTCTCCAAA+TGG - chr4_2:33620463-33620482 Msa0598430:intron 45.0%
GCAACTCTAGTTGACATCAG+AGG + chr4_2:33620512-33620531 None:intergenic 45.0%
!!! TTCGACCCTTTTTCAGCGAA+TGG - chr4_2:33620654-33620673 Msa0598430:CDS 45.0%
CTTAGGCCATTCGCTGAAAA+AGG + chr4_2:33620663-33620682 None:intergenic 45.0%
! TGTGGAGAATGCTGTTTGGT+TGG + chr4_2:33620723-33620742 None:intergenic 45.0%
GAGTTGTGGAGAATGCTGTT+TGG + chr4_2:33620727-33620746 None:intergenic 45.0%
GTCAGACGATGACATAGGAA+TGG + chr4_2:33620762-33620781 None:intergenic 45.0%
GAGAAGTCAGACGATGACAT+AGG + chr4_2:33620767-33620786 None:intergenic 45.0%
GATAACTAGAGCAGTCATCC+AGG - chr4_2:33620896-33620915 Msa0598430:five_prime_UTR 45.0%
TGTACAACCTCGTAGAACTC+TGG - chr4_2:33621090-33621109 Msa0598430:five_prime_UTR 45.0%
GTACAACCTCGTAGAACTCT+GGG - chr4_2:33621091-33621110 Msa0598430:five_prime_UTR 45.0%
TACAACCTCGTAGAACTCTG+GGG - chr4_2:33621092-33621111 Msa0598430:five_prime_UTR 45.0%
!! TTATAAACAAATAAAAAATT+AGG + chr4_2:33618168-33618187 None:intergenic 5.0%
! TCAGATCGAGCTTTGTCGGA+AGG + chr4_2:33617400-33617419 None:intergenic 50.0%
GACAAAGCTCGATCTGAGTC+TGG - chr4_2:33617403-33617422 Msa0598430:three_prime_UTR 50.0%
! GGTGGTGGCAGTAGTAACAA+CGG - chr4_2:33617559-33617578 Msa0598430:intron 50.0%
! GGAGGTGTAGGGATGATGAT+GGG - chr4_2:33617580-33617599 Msa0598430:intron 50.0%
TGCCACTGAGACACTGTGAA+GGG + chr4_2:33617622-33617641 None:intergenic 50.0%
TCGAACCTGAGACCTTGAGA+AGG - chr4_2:33618018-33618037 Msa0598430:intron 50.0%
!! GTGGTATTGGCTTGAGACCT+GGG + chr4_2:33618052-33618071 None:intergenic 50.0%
!! AGTGGTATTGGCTTGAGACC+TGG + chr4_2:33618053-33618072 None:intergenic 50.0%
!! TTGGGTTGGCTCAGTGGTAT+TGG + chr4_2:33618065-33618084 None:intergenic 50.0%
GTCCACCTTCTTCCCATAGA+AGG + chr4_2:33618668-33618687 None:intergenic 50.0%
TCAGTCCTCCTACATCTTCC+TGG + chr4_2:33618697-33618716 None:intergenic 50.0%
GGAAGATGTAGGAGGACTGA+TGG - chr4_2:33618697-33618716 Msa0598430:intron 50.0%
GCTCACAGTACTTGGAGTCT+GGG + chr4_2:33618753-33618772 None:intergenic 50.0%
CAGGCTTTCTTGAACGGTTG+CGG + chr4_2:33618792-33618811 None:intergenic 50.0%
CAACCGTTCAAGAAAGCCTG+TGG - chr4_2:33618792-33618811 Msa0598430:intron 50.0%
GACAGTTAGCGATGTCACAG+TGG + chr4_2:33618845-33618864 None:intergenic 50.0%
TTGGGTGATACTCTGACACG+AGG - chr4_2:33619444-33619463 Msa0598430:CDS 50.0%
TGGGTGATACTCTGACACGA+GGG - chr4_2:33619445-33619464 Msa0598430:CDS 50.0%
AGCTTCAGGAGGAGACAACA+AGG - chr4_2:33620451-33620470 Msa0598430:intron 50.0%
GCTTCAGGAGGAGACAACAA+GGG - chr4_2:33620452-33620471 Msa0598430:intron 50.0%
TTTCCAGCTGCGACTCCATT+TGG + chr4_2:33620481-33620500 None:intergenic 50.0%
AGTCGCAGCTGGAAAACACA+TGG - chr4_2:33620486-33620505 Msa0598430:intron 50.0%
TGGATCTGGAGAAGCTGTGA+AGG - chr4_2:33620616-33620635 Msa0598430:intron 50.0%
TGGAGAAGCTGTGAAGGAAG+AGG - chr4_2:33620622-33620641 Msa0598430:intron 50.0%
GGAGAAGCTGTGAAGGAAGA+GGG - chr4_2:33620623-33620642 Msa0598430:intron 50.0%
TGAAAAAGGGTCGAAGAGGC+TGG + chr4_2:33620649-33620668 None:intergenic 50.0%
TCGCTGAAAAAGGGTCGAAG+AGG + chr4_2:33620653-33620672 None:intergenic 50.0%
GGTGGCAGTAGTAACAACGG+AGG - chr4_2:33617562-33617581 Msa0598430:intron 55.0%
! CGGAGGTGTAGGGATGATGA+TGG - chr4_2:33617579-33617598 Msa0598430:intron 55.0%
CACCCTTCACAGTGTCTCAG+TGG - chr4_2:33617617-33617636 Msa0598430:CDS 55.0%
CTGCCACTGAGACACTGTGA+AGG + chr4_2:33617623-33617642 None:intergenic 55.0%
CTTCACAGTGTCTCAGTGGC+AGG - chr4_2:33617621-33617640 Msa0598430:CDS 55.0%
TACCACTGAGCCAACCCAAG+TGG - chr4_2:33618066-33618085 Msa0598430:intron 55.0%
ACCACTGAGCCAACCCAAGT+GGG - chr4_2:33618067-33618086 Msa0598430:intron 55.0%
GGATCGTAACCCACTTGGGT+TGG + chr4_2:33618079-33618098 None:intergenic 55.0%
CTATGGGAAGAAGGTGGACC+CGG - chr4_2:33618669-33618688 Msa0598430:intron 55.0%
TCCTACATCTTCCTGGCTCC+GGG + chr4_2:33618690-33618709 None:intergenic 55.0%
CTCCTACATCTTCCTGGCTC+CGG + chr4_2:33618691-33618710 None:intergenic 55.0%
CGCTCACAGTACTTGGAGTC+TGG + chr4_2:33618754-33618773 None:intergenic 55.0%
CATGTGGCGCTCACAGTACT+TGG + chr4_2:33618761-33618780 None:intergenic 55.0%
TTCTTGAACGGTTGCGGCCA+CGG + chr4_2:33618786-33618805 None:intergenic 55.0%
GTGACATCGCTAACTGTCGC+TGG - chr4_2:33618847-33618866 Msa0598430:intron 55.0%
GATACTCTGACACGAGGGCT+AGG - chr4_2:33619450-33619469 Msa0598430:CDS 55.0%
AGCTATGGCAGGCTGACAGA+AGG + chr4_2:33619695-33619714 None:intergenic 55.0%
AGCCTGCCATAGCTGTCACA+TGG - chr4_2:33619701-33619720 Msa0598430:CDS 55.0%
GCCTGCCATAGCTGTCACAT+GGG - chr4_2:33619702-33619721 Msa0598430:CDS 55.0%
CCTGCCATAGCTGTCACATG+GGG - chr4_2:33619703-33619722 Msa0598430:CDS 55.0%
TCTCCAAATGGAGTCGCAGC+TGG - chr4_2:33620475-33620494 Msa0598430:intron 55.0%
GACCACGACTCTCTGCTCTT+AGG + chr4_2:33620680-33620699 None:intergenic 55.0%
AAGAGCAGAGAGTCGTGGTC+TGG - chr4_2:33620680-33620699 Msa0598430:CDS 55.0%
CAGAGAGTCGTGGTCTGGTT+TGG - chr4_2:33620685-33620704 Msa0598430:CDS 55.0%
ACAAGCTCTCAGTCGCCACA+CGG - chr4_2:33620791-33620810 Msa0598430:CDS 55.0%
GAATGCCCCAGAGTTCTACG+AGG + chr4_2:33621100-33621119 None:intergenic 55.0%
!! ACCCACTTGGGTTGGCTCAG+TGG + chr4_2:33618071-33618090 None:intergenic 60.0%
ACCCGGAGCCAGGAAGATGT+AGG - chr4_2:33618686-33618705 Msa0598430:intron 60.0%
CGGAGCCAGGAAGATGTAGG+AGG - chr4_2:33618689-33618708 Msa0598430:intron 60.0%
CCCCATGTGACAGCTATGGC+AGG + chr4_2:33619706-33619725 None:intergenic 60.0%
GGCCTAAGAGCAGAGAGTCG+TGG - chr4_2:33620675-33620694 Msa0598430:CDS 60.0%
GTGTGGCGACTGAGAGCTTG+TGG + chr4_2:33620792-33620811 None:intergenic 60.0%
AAGAAGGTGGACCCGGAGCC+AGG - chr4_2:33618676-33618695 Msa0598430:intron 65.0%
TGTGAGCGCCACATGCACCG+TGG - chr4_2:33618766-33618785 Msa0598430:intron 65.0%
GCTGGTAGCAGCAGCAGAGC+TGG - chr4_2:33618865-33618884 Msa0598430:intron 65.0%
GGTTGCGGCCACGGTGCATG+TGG + chr4_2:33618777-33618796 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 33617229 33621184 33617229 ID=Msa0598430;Name=Msa0598430
chr4_2 mRNA 33617229 33621184 33617229 ID=Msa0598430-mRNA-1;Parent=Msa0598430;Name=Msa0598430-mRNA-1;_AED=0.18;_eAED=0.18;_QI=318|1|1|1|1|1|4|280|337
chr4_2 exon 33617229 33617516 33617229 ID=Msa0598430-mRNA-1:exon:8055;Parent=Msa0598430-mRNA-1
chr4_2 exon 33617601 33618013 33617601 ID=Msa0598430-mRNA-1:exon:8054;Parent=Msa0598430-mRNA-1
chr4_2 exon 33619400 33619760 33619400 ID=Msa0598430-mRNA-1:exon:8053;Parent=Msa0598430-mRNA-1
chr4_2 exon 33620635 33621184 33620635 ID=Msa0598430-mRNA-1:exon:8052;Parent=Msa0598430-mRNA-1
chr4_2 five_prime_UTR 33620867 33621184 33620867 ID=Msa0598430-mRNA-1:five_prime_utr;Parent=Msa0598430-mRNA-1
chr4_2 CDS 33620635 33620866 33620635 ID=Msa0598430-mRNA-1:cds;Parent=Msa0598430-mRNA-1
chr4_2 CDS 33619400 33619760 33619400 ID=Msa0598430-mRNA-1:cds;Parent=Msa0598430-mRNA-1
chr4_2 CDS 33617601 33618013 33617601 ID=Msa0598430-mRNA-1:cds;Parent=Msa0598430-mRNA-1
chr4_2 CDS 33617509 33617516 33617509 ID=Msa0598430-mRNA-1:cds;Parent=Msa0598430-mRNA-1
chr4_2 three_prime_UTR 33617229 33617508 33617229 ID=Msa0598430-mRNA-1:three_prime_utr;Parent=Msa0598430-mRNA-1
Gene Sequence

>Msa0598430

ATGAATAGCTCTGGTGGTGGCAGTAGTAACAACGGAGGTGTAGGGATGATGATGGGTTACAGTAAATCATCACCCTTCACAGTGTCTCAGTGGCAGGAACTTGAACATCAAGCTTTGATCTTTAAATATATGGTTGCTGGTCTTCCTGTTCCACATGATCTTGTCCTTCCTATTCATTCCAGTTTTCACTCTCTTTCTTCCAATAACTTCTTTCACCACCCTATTCCTACCTTGAGTTACTGTTCCTTCTATGGGAAGAAGGTGGACCCGGAGCCAGGAAGATGTAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCTAAGGAAGCATACCCAGACTCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGGCACAGTCATCATCCACTGTGACATCGCTAACTGTCGCTGGTAGCAGCAGCAGAGCTGGTAACTTCCAGAACATTCCAACAACAAATGCATTTGGTAGTGTTCAAAATACTACAGGTTCTGGAACCGACCGTGCCGATTATCATCTTGATACCATTCCCTATGGGATTCCAAGTAAAGAATACAGGTATCTTCAAGGTCTTAAATCTGAGGGTGGAGAACATAGCTTCTTTGCAGAAGCTTCAGGAGGAGACAACAAGGGTCTCCAAATGGAGTCGCAGCTGGAAAACACATGGCCTCTGATGTCAACTAGAGTTGCCTCTTTTTCTGCATCAAAATCAAGCTGTAATAATTCCATGTTGCAAAGTGATTATCCCCAACATTCATTTTTATCTGGTGAATATGGATCTGGAGAAGCTGTGAAGGAAGAGGGCCAGCCTCTTCGACCCTTTTTCAGCGAATGGCCTAAGAGCAGAGAGTCGTGGTCTGGTTTGGAAGATGAGAGATCCAACCAAACAGCATTCTCCACAACTCAACTTTCAATATCCATTCCTATGTCATCGTCTGACTTCTCTGCCACAAGCTCTCAGTCGCCACACGATAACTAG
Protein sequence

>Msa0598430

MNSSGGGSSNNGGVGMMMGYSKSSPFTVSQWQELEHQALIFKYMVAGLPVPHDLVLPIHSSFHSLSSNNFFHHPIPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMAQSSSTVTSLTVAGSSSRAGNFQNIPTTNAFGSVQNTTGSGTDRADYHLDTIPYGIPSKEYRYLQGLKSEGGEHSFFAEASGGDNKGLQMESQLENTWPLMSTRVASFSASKSSCNNSMLQSDYPQHSFLSGEYGSGEAVKEEGQPLRPFFSEWPKSRESWSGLEDERSNQTAFSTTQLSISIPMSSSDFSATSSQSPHDN*