AlfalfaGEDB | Msa0598580

M. sativa cultivar zhongmu-4 / Msa0598580

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0598580	KEH29536.1	90.323	806	78	0	1	806	24	829	0.0	1448

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0598580	sp\|Q9FYK0\|TMK2_ARATH	36.108	781	454	21	31	777	48	817	2.33e-141	442

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0598580	MtrunA17_Chr4g0022331	90.323	806	78	0	1	806	24	829	1448
Msa0598580	MtrunA17_Chr7g0250741	78.915	811	165	5	1	806	22	831	1270
Msa0598580	MtrunA17_Chr7g0250931	60.562	819	303	8	6	806	29	845	919
Msa0598580	MtrunA17_Chr3g0121971	49.346	841	360	15	2	783	28	861	719
Msa0598580	MtrunA17_Chr7g0238401	52.359	657	274	13	158	800	1	632	611
Msa0598580	MtrunA17_Chr7g0251071	74.016	381	93	3	428	802	267	647	585
Msa0598580	MtrunA17_Chr7g0251051	76.584	363	83	1	442	802	244	606	580
Msa0598580	MtrunA17_Chr7g0251101	69.598	398	102	2	428	806	259	656	573
Msa0598580	MtrunA17_Chr7g0251061	74.247	365	94	0	442	806	281	645	569
Msa0598580	MtrunA17_Chr1g0212821	71.662	367	98	2	441	802	10	375	564

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0598580	AT1G24650.1	36.108	781	454	21	31	777	48	817	2.37e-142	442
Msa0598580	AT2G01820.1	34.721	841	450	27	31	794	54	872	4.24e-132	417
Msa0598580	AT3G23750.1	50.353	425	204	6	2	422	22	443	3.66e-128	406
Msa0598580	AT3G23750.1	34.694	294	175	9	504	787	571	857	3.27e-43	169
Msa0598580	AT5G38280.1	59.677	310	117	4	497	802	319	624	2.54e-127	396
Msa0598580	AT5G38280.2	59.677	310	117	4	497	802	319	624	3.64e-127	396
Msa0598580	AT1G70250.1	60.323	310	114	4	497	801	447	752	2.04e-126	398
Msa0598580	AT4G18250.1	51.269	394	153	9	427	798	272	648	2.72e-125	392
Msa0598580	AT5G38240.3	56.731	312	122	3	493	801	255	556	1.78e-120	375
Msa0598580	AT5G38240.2	56.731	312	122	3	493	801	301	602	8.76e-120	375

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Find 192 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATTATGACACTGGC+GGG	0.541041	4_2:-35452697	Msa0598580:CDS
AAACAACACCATATCCTCCT+TGG	0.563470	4_2:+35453284	None:intergenic
AAACACTTCTTCCCTGTCGC+TGG	0.458823	4_2:-35453696	Msa0598580:CDS
AAACGGTGTCAAGGAAGGTG+AGG	0.671500	4_2:+35454728	None:intergenic
AAACTCGTTTCGAGATAAGT+TGG	0.457786	4_2:-35453308	Msa0598580:CDS
AAAGCTCGACTAAATACTTC+TGG	0.393256	4_2:+35452788	None:intergenic
AAAGTAATAGAAATGCTGCA+AGG	0.596714	4_2:-35452500	Msa0598580:CDS
AAAGTGATAAGTGAGTGCAA+GGG	0.759192	4_2:-35453223	Msa0598580:CDS
AACCAAATTCTCCAGCAACA+CGG	0.655961	4_2:+35454065	None:intergenic
AACTCGATGGGAATCGTCCA+TGG	0.538159	4_2:+35454607	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGTTCCATTCAATGACA+TGG	+	chr4_2:35452587-35452606	None:intergenic	30.0%
ATCAAATAAATCGGTACAGT+TGG	+	chr4_2:35453130-35453149	None:intergenic	30.0%
AAGCTGCAGATCAAATAAAT+CGG	+	chr4_2:35453139-35453158	None:intergenic	30.0%
ATTTATTTGATCTGCAGCTT+CGG	-	chr4_2:35453139-35453158	Msa0598580:CDS	30.0%
ATTTGGTTATCCTCTTCAAT+TGG	-	chr4_2:35453371-35453390	Msa0598580:CDS	30.0%
AATTGGTGAATTCTTGGAAA+GGG	-	chr4_2:35453388-35453407	Msa0598580:CDS	30.0%
GTATCTAACAACAATCTATC+TGG	-	chr4_2:35453618-35453637	Msa0598580:intron	30.0%
TATGCTCAGATTCAATTCAA+CGG	-	chr4_2:35453662-35453681	Msa0598580:intron	30.0%
GTGATACACATAAAAATCAC+TGG	+	chr4_2:35453773-35453792	None:intergenic	30.0%
TTATGAAATCCTCAATATCG+TGG	+	chr4_2:35454035-35454054	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	35452433	35455010	35452433	ID=Msa0598580;Name=Msa0598580
chr4_2	mRNA	35452433	35455010	35452433	ID=Msa0598580-mRNA-1;Parent=Msa0598580;Name=Msa0598580-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|1\|0\|1\|1\|1\|2\|0\|806
chr4_2	exon	35453684	35455010	35453684	ID=Msa0598580-mRNA-1:exon:8162;Parent=Msa0598580-mRNA-1
chr4_2	exon	35452433	35453526	35452433	ID=Msa0598580-mRNA-1:exon:8161;Parent=Msa0598580-mRNA-1
chr4_2	CDS	35453684	35455010	35453684	ID=Msa0598580-mRNA-1:cds;Parent=Msa0598580-mRNA-1
chr4_2	CDS	35452433	35453526	35452433	ID=Msa0598580-mRNA-1:cds;Parent=Msa0598580-mRNA-1

Gene Sequence

>Msa0598580

ATGGCCATTGCGGATGATGGCATTTTCATGTCAAAACTGGCAAAATCCTTGAGTCCTACACCATCAGGTTGGTCATCGAGAAGATTCTTCTGCAACTGGAAAGGCGTAAAATGCGACGAATTAAATAGTGTAACATCTATCAACCTTGCTTCCATGTCATTGAATGGAACAATTCCTTCTGATCTCAACTTACTTTCCAAACTCACGTCCCTAGTTCTATTTTCCAACTCCCTTTCCGGTGCATTACCCTCACTCTCTAACCTCACCTTCCTTGACACCGTTTTCCTCGACGAGAACAACTTCTCCTCCGTCCCAGACGGTTGCTTCCAGGGACTCGTCAGCCTCCATACACTCTCCATGAGCAACAACATCAACCTGGCTCCATGGACGATTCCCATCGAGTTGATACAGTCTTCCAACCTCGTCTCACTTGACCTCGCAAATACCAATATCGTGGGTACTCTCCCAGAGATATTCCACCCTTTAGTCCGTTTGCAGAACCTCCGTGTCTCATATAACAACCTCACGGGGGATTTGCCAATGTCTTTCTTGGGATCTGATATTCAGAACTTGTGGCTCAACAATCAGAAGCCAAACGGGTTTACAGGTTCTATTTACGTACTTGCTTCAATGACCCACTTGACTCAGGTTTGGCTTATGAATAACAAGTTTACTGGTCAAATTCCTGATTTCTCCAACTGTACCGATTTATTTGATCTGCAGCTTCGGGATAATCAGTTAACAGGTGTTGTTCCATCTTCTTTAATCGCTTTGTCTAGCTTGCAGAACGTTTCCTTGGACAACAATCATTTGCAAGGCCCTTTCCCTTCTTTCAGGAAAGGTGTATCGTTTACTCTTGATGAAATCCATAGCTTCTGTCAAAACACTCCTGGACCTTGCGATCCGCGGGTCACTACTTTACTCCGTGTTGCTGGAGAATTTGGTTATCCTCTTCAATTGGTGAATTCTTGGAAAGGGAACAATCCTTGTCAAAATTGGAGCTTCGTTGTGTGTTCAGAGAGGAAGATTATTACATTGAACTTAGCCAAGCAGAAATTGAAGGGAACCATTTCACCTTCATTTGCAAGTTTAACTTATTTGAGGAACTTGTATTTGGGTGATAACAATTTGACAGGTTCAATACCTTGGAGCTTGACAAGTTTACCGCATCTTCAGGTTCTAGATGTATCTAACAACAATCTATCTGGAGATGTTCCTAAATTCTCTTCTATGCTCAGATTCAATTCAACGGGTAATGTTTTGCTTCAACCTGGAAGTCCGTCTGAAAAGGCAAACACTTCTTCCCTGTCGCTGGCTTGGTTTCTTGGAGCATCATTGTTTGGTGCAGGGGCTTTATCACTTATTGTGATTTTTTGTAAACGTAAGGGATATCTAAGCTTAGTACAAACGAGGATCTTCAAAAACACAAGAATAGTTATTGACCACGATATTGAGGATTTCATAAAAAGATATAATTTGTCAGTGCCTAAGCGGTTTAGTTATGCAGATGTGAAAAGGTTCACAAACTCGTTTCGAGATAAGTTGGGCCAAGGAGGATATGGTGTTGTTTACAAAGCCAGTTTACCTGATGGCCGTCATGTAGCGGTGAAAGTGATAAGTGAGTGCAAGGGAAACGGAGAAGAATTTATAAACGAAGTTGCAAGCATAACTAAAACATCACATATGAACGTTGTTTCACTTTTGGGTTTTTGTTATGAGAAGAACAAAAGAGCATTGATATATGAATTCATGTCCAATGGATCATTAGATAAGTTCATATACAAAAGTGGATTTCCAAATGCTATTTGTGATTTGGATTGGAACACATTATTCCAAATTGTAATTGGCATTGCTCGAGGACTAGAGTACTTACATCAAGGTTGTATTTCAAGAATTTTGCATCTTGATATCAAACCTCAAAACATTCTTTTAGATGAAGATTTTTGCCCAAAAATATCTGATTTTGGTCTTGCTAAAATATGTCAAAAGAAAGAGAGTATTGTGTCCATGCTTGGCACAAGAGGAACTATAGGCTACATATCACCAGAAGTATTTAGTCGAGCTTTTGGTGGAGTTTCTTCTAAGTCCGATGTATACAGTTATGGCATGTTGATTCTTGAAATGACCGGAGGAAAAAAGAATTATGACACTGGCGGGTCTGATACAACTGAAACATACTTTCCGGATTGGATATTTAAGGATCTTGAGCAAGGTAATTCTCTTTTAAATAGTTTGGCAATCTCAGAAGAAGAAAATGATATGCTAAAGAAGATTACTATGGTGAGTTTGTGGTGTATTCAAACGAATCCATCAGACAGACCATCAATGAGTAAAGTAATAGAAATGCTGCAAGGGCCACTTCATTCAATACAATATCCTCCAAAGCCTGTCTTATTTTCTCCAAAAGGGCAATCTTTATAA

Protein sequence

>Msa0598580

MAIADDGIFMSKLAKSLSPTPSGWSSRRFFCNWKGVKCDELNSVTSINLASMSLNGTIPSDLNLLSKLTSLVLFSNSLSGALPSLSNLTFLDTVFLDENNFSSVPDGCFQGLVSLHTLSMSNNINLAPWTIPIELIQSSNLVSLDLANTNIVGTLPEIFHPLVRLQNLRVSYNNLTGDLPMSFLGSDIQNLWLNNQKPNGFTGSIYVLASMTHLTQVWLMNNKFTGQIPDFSNCTDLFDLQLRDNQLTGVVPSSLIALSSLQNVSLDNNHLQGPFPSFRKGVSFTLDEIHSFCQNTPGPCDPRVTTLLRVAGEFGYPLQLVNSWKGNNPCQNWSFVVCSERKIITLNLAKQKLKGTISPSFASLTYLRNLYLGDNNLTGSIPWSLTSLPHLQVLDVSNNNLSGDVPKFSSMLRFNSTGNVLLQPGSPSEKANTSSLSLAWFLGASLFGAGALSLIVIFCKRKGYLSLVQTRIFKNTRIVIDHDIEDFIKRYNLSVPKRFSYADVKRFTNSFRDKLGQGGYGVVYKASLPDGRHVAVKVISECKGNGEEFINEVASITKTSHMNVVSLLGFCYEKNKRALIYEFMSNGSLDKFIYKSGFPNAICDLDWNTLFQIVIGIARGLEYLHQGCISRILHLDIKPQNILLDEDFCPKISDFGLAKICQKKESIVSMLGTRGTIGYISPEVFSRAFGGVSSKSDVYSYGMLILEMTGGKKNYDTGGSDTTETYFPDWIFKDLEQGNSLLNSLAISEEENDMLKKITMVSLWCIQTNPSDRPSMSKVIEMLQGPLHSIQYPPKPVLFSPKGQSL*