Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599550 | XP_039686389.1 | 75.490 | 204 | 22 | 1 | 1 | 176 | 2 | 205 | 1.56e-96 | 310 |
| Msa0599550 | XP_039686389.1 | 89.474 | 57 | 6 | 0 | 177 | 233 | 382 | 438 | 7.21e-25 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599550 | sp|Q9SZL8|FRS5_ARATH | 50.000 | 54 | 27 | 0 | 179 | 232 | 437 | 490 | 2.66e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599550 | A0A396J7J0 | 71.429 | 182 | 24 | 1 | 31 | 184 | 1 | 182 | 5.32e-78 | 258 |
| Msa0599550 | A0A396J7J0 | 89.474 | 57 | 6 | 0 | 177 | 233 | 351 | 407 | 3.24e-25 | 114 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0599550 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599550 | MtrunA17_Chr2g0296781 | 71.429 | 182 | 24 | 1 | 31 | 184 | 1 | 182 | 1.02e-81 | 258 |
| Msa0599550 | MtrunA17_Chr2g0296781 | 89.474 | 57 | 6 | 0 | 177 | 233 | 351 | 407 | 6.24e-29 | 114 |
| Msa0599550 | MtrunA17_Chr1g0196541 | 49.718 | 177 | 55 | 2 | 31 | 176 | 1 | 174 | 1.09e-46 | 164 |
| Msa0599550 | MtrunA17_Chr1g0196541 | 83.333 | 54 | 9 | 0 | 180 | 233 | 354 | 407 | 6.25e-25 | 102 |
| Msa0599550 | MtrunA17_Chr6g0477261 | 93.651 | 63 | 4 | 0 | 114 | 176 | 1 | 63 | 2.54e-32 | 124 |
| Msa0599550 | MtrunA17_Chr6g0477261 | 91.228 | 57 | 5 | 0 | 177 | 233 | 240 | 296 | 8.11e-30 | 116 |
| Msa0599550 | MtrunA17_Chr6g0476431 | 79.688 | 64 | 13 | 0 | 31 | 94 | 1 | 64 | 5.82e-31 | 109 |
| Msa0599550 | MtrunA17_Chr6g0451441 | 29.189 | 185 | 97 | 4 | 8 | 160 | 65 | 247 | 1.24e-18 | 84.0 |
| Msa0599550 | MtrunA17_Chr5g0441581 | 27.823 | 248 | 132 | 6 | 16 | 231 | 18 | 250 | 1.53e-17 | 81.3 |
| Msa0599550 | MtrunA17_Chr5g0441581 | 62.264 | 53 | 20 | 0 | 180 | 232 | 382 | 434 | 2.85e-17 | 80.5 |
| Msa0599550 | MtrunA17_Chr1g0207551 | 41.667 | 96 | 51 | 1 | 143 | 233 | 352 | 447 | 1.13e-16 | 78.6 |
| Msa0599550 | MtrunA17_Chr5g0448761 | 56.604 | 53 | 23 | 0 | 180 | 232 | 429 | 481 | 2.06e-13 | 68.9 |
| Msa0599550 | MtrunA17_Chr1g0202341 | 56.604 | 53 | 23 | 0 | 180 | 232 | 413 | 465 | 5.90e-13 | 67.8 |
| Msa0599550 | MtrunA17_Chr2g0324011 | 24.528 | 212 | 125 | 5 | 27 | 206 | 10 | 218 | 2.35e-11 | 62.8 |
| Msa0599550 | MtrunA17_Chr7g0258861 | 25.789 | 190 | 108 | 5 | 27 | 183 | 10 | 199 | 5.98e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599550 | AT4G38180.1 | 50.000 | 54 | 27 | 0 | 179 | 232 | 437 | 490 | 2.71e-13 | 69.3 |
| Msa0599550 | AT4G15090.1 | 53.704 | 54 | 25 | 0 | 180 | 233 | 414 | 467 | 9.56e-13 | 67.4 |
| Msa0599550 | AT4G15090.5 | 53.704 | 54 | 25 | 0 | 180 | 233 | 414 | 467 | 9.56e-13 | 67.4 |
| Msa0599550 | AT4G15090.3 | 53.704 | 54 | 25 | 0 | 180 | 233 | 414 | 467 | 9.56e-13 | 67.4 |
| Msa0599550 | AT4G15090.2 | 53.704 | 54 | 25 | 0 | 180 | 233 | 414 | 467 | 9.56e-13 | 67.4 |
| Msa0599550 | AT4G15090.4 | 53.704 | 54 | 25 | 0 | 180 | 233 | 414 | 467 | 9.56e-13 | 67.4 |
| Msa0599550 | AT3G22170.2 | 34.375 | 96 | 58 | 2 | 143 | 233 | 381 | 476 | 8.77e-12 | 64.7 |
| Msa0599550 | AT3G22170.1 | 34.375 | 96 | 58 | 2 | 143 | 233 | 381 | 476 | 8.77e-12 | 64.7 |
| Msa0599550 | AT4G19990.3 | 50.000 | 54 | 27 | 0 | 180 | 233 | 362 | 415 | 2.12e-11 | 63.5 |
| Msa0599550 | AT4G19990.4 | 50.000 | 54 | 27 | 0 | 180 | 233 | 362 | 415 | 2.12e-11 | 63.5 |
| Msa0599550 | AT4G19990.5 | 50.000 | 54 | 27 | 0 | 180 | 233 | 362 | 415 | 2.18e-11 | 63.5 |
| Msa0599550 | AT4G19990.7 | 50.000 | 54 | 27 | 0 | 180 | 233 | 376 | 429 | 2.25e-11 | 63.5 |
| Msa0599550 | AT4G19990.6 | 50.000 | 54 | 27 | 0 | 180 | 233 | 362 | 415 | 2.26e-11 | 63.5 |
| Msa0599550 | AT4G19990.2 | 50.000 | 54 | 27 | 0 | 180 | 233 | 362 | 415 | 2.26e-11 | 63.5 |
| Msa0599550 | AT4G19990.1 | 50.000 | 54 | 27 | 0 | 180 | 233 | 305 | 358 | 2.37e-11 | 63.5 |
Find 36 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATGTAATAGACACATTT+TGG | 0.128940 | 4_2:+39342869 | Msa0599550:CDS |
| TATGCTCAACGGGTGGGTTT+TGG | 0.262677 | 4_2:+39341801 | Msa0599550:CDS |
| ATTTGAGTCTTGTGATGAAT+TGG | 0.359102 | 4_2:+39341674 | Msa0599550:CDS |
| TTTAGATCAAACAAGAATAT+GGG | 0.383170 | 4_2:+39342056 | Msa0599550:CDS |
| ATTGGAAACTAATGATTGTT+TGG | 0.392026 | 4_2:+39341692 | Msa0599550:CDS |
| TCTCTAGTCGTTGAAGCAAA+TGG | 0.412215 | 4_2:+39342146 | Msa0599550:CDS |
| ATTTGTTGAGCGACATCGTT+GGG | 0.415533 | 4_2:+39342840 | Msa0599550:CDS |
| CCGTGTGTTGGGATGTCATT+TGG | 0.418180 | 4_2:+39341744 | Msa0599550:CDS |
| ATGATAATGCATGGCTGAAA+GGG | 0.434869 | 4_2:+39342815 | Msa0599550:CDS |
| GGGTATGAGAATCTCACATT+TGG | 0.461849 | 4_2:+39342167 | Msa0599550:CDS |
| CTCTAGTCGTTGAAGCAAAT+GGG | 0.464172 | 4_2:+39342147 | Msa0599550:CDS |
| GCATACTCATGATCTAAGTC+CGG | 0.480268 | 4_2:+39342019 | Msa0599550:intron |
| CTTTAGCATGTAATCGAGCT+AGG | 0.482007 | 4_2:+39341874 | Msa0599550:CDS |
| AGGTAAGACGACTACGACTT+GGG | 0.482980 | 4_2:+39342219 | Msa0599550:CDS |
| AATGTGTCTATTACATATGC+AGG | 0.483885 | 4_2:-39342865 | None:intergenic |
| CATACTCATGATCTAAGTCC+GGG | 0.487754 | 4_2:+39342020 | Msa0599550:CDS |
| CATGATAATGCATGGCTGAA+AGG | 0.490672 | 4_2:+39342814 | Msa0599550:CDS |
| AAGAAGAAACACCGTGTGTT+GGG | 0.498527 | 4_2:+39341733 | Msa0599550:CDS |
| TTACACGAATTATGCTCAAC+GGG | 0.506941 | 4_2:+39341791 | Msa0599550:CDS |
| CTAAAATATCGTGCTTTCCC+CGG | 0.508016 | 4_2:-39342038 | None:intergenic |
| ACGAATTATGCTCAACGGGT+GGG | 0.525850 | 4_2:+39341795 | Msa0599550:CDS |
| AAGGTAAGACGACTACGACT+TGG | 0.530358 | 4_2:+39342218 | Msa0599550:CDS |
| AGCATAATTCGTGTAATACT+CGG | 0.539308 | 4_2:-39341784 | None:intergenic |
| CACGAATTATGCTCAACGGG+TGG | 0.544693 | 4_2:+39341794 | Msa0599550:CDS |
| TTAGAACTCAATGATCAAGC+TGG | 0.558672 | 4_2:+39342098 | Msa0599550:CDS |
| TTAGATCAAACAAGAATATG+GGG | 0.564161 | 4_2:+39342057 | Msa0599550:CDS |
| GAAGAAGAAACACCGTGTGT+TGG | 0.564730 | 4_2:+39341732 | Msa0599550:CDS |
| AGACGACTACGACTTGGGAC+AGG | 0.570898 | 4_2:+39342224 | Msa0599550:CDS |
| TAGAACTCAATGATCAAGCT+GGG | 0.577189 | 4_2:+39342099 | Msa0599550:CDS |
| TATTTGTTGAGCGACATCGT+TGG | 0.604452 | 4_2:+39342839 | Msa0599550:CDS |
| CTGCAGGAACTATATAAACA+AGG | 0.626913 | 4_2:+39342199 | Msa0599550:CDS |
| ATTACACGAATTATGCTCAA+CGG | 0.634438 | 4_2:+39341790 | Msa0599550:CDS |
| ACAAACTACATGATAATGCA+TGG | 0.647206 | 4_2:+39342806 | Msa0599550:CDS |
| CCAAATGACATCCCAACACA+CGG | 0.647757 | 4_2:-39341744 | None:intergenic |
| TAGATCAAACAAGAATATGG+GGG | 0.663543 | 4_2:+39342058 | Msa0599550:CDS |
| ATACTCATGATCTAAGTCCG+GGG | 0.710170 | 4_2:+39342021 | Msa0599550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATACAAAAATATTTTGTT+AGG | + | chr4_2:39342258-39342277 | Msa0599550:intron | 15.0% |
| !!! | TTGTCAATTTTATTATGTAA+TGG | + | chr4_2:39342295-39342314 | Msa0599550:intron | 15.0% |
| !!! | ATATTTATTTGTTAAGTAAG+TGG | - | chr4_2:39342416-39342435 | None:intergenic | 15.0% |
| !!! | CAATACAAAAATATTTTGTT+AGG | + | chr4_2:39342258-39342277 | Msa0599550:intron | 15.0% |
| !!! | TTGTCAATTTTATTATGTAA+TGG | + | chr4_2:39342295-39342314 | Msa0599550:intron | 15.0% |
| !!! | ATATTTATTTGTTAAGTAAG+TGG | - | chr4_2:39342416-39342435 | None:intergenic | 15.0% |
| !! | TGCTAAAATAAGTTCAAAAA+AGG | + | chr4_2:39341827-39341846 | Msa0599550:CDS | 20.0% |
| !! | GCTAAAATAAGTTCAAAAAA+GGG | + | chr4_2:39341828-39341847 | Msa0599550:CDS | 20.0% |
| !! | AATGCATGTATTTATTTAGA+CGG | + | chr4_2:39341968-39341987 | Msa0599550:intron | 20.0% |
| !!! | TTTTAGATCAAACAAGAATA+TGG | + | chr4_2:39342055-39342074 | Msa0599550:CDS | 20.0% |
| !! | TTTAGATCAAACAAGAATAT+GGG | + | chr4_2:39342056-39342075 | Msa0599550:CDS | 20.0% |
| !!! | ATTTTATTATGTAATGGATG+TGG | + | chr4_2:39342301-39342320 | Msa0599550:intron | 20.0% |
| !!! | ATATGTAATAGACACATTTT+GGG | + | chr4_2:39342870-39342889 | Msa0599550:CDS | 20.0% |
| !! | TGCTAAAATAAGTTCAAAAA+AGG | + | chr4_2:39341827-39341846 | Msa0599550:CDS | 20.0% |
| !! | GCTAAAATAAGTTCAAAAAA+GGG | + | chr4_2:39341828-39341847 | Msa0599550:CDS | 20.0% |
| !! | AATGCATGTATTTATTTAGA+CGG | + | chr4_2:39341968-39341987 | Msa0599550:intron | 20.0% |
| !!! | TTTTAGATCAAACAAGAATA+TGG | + | chr4_2:39342055-39342074 | Msa0599550:CDS | 20.0% |
| !! | TTTAGATCAAACAAGAATAT+GGG | + | chr4_2:39342056-39342075 | Msa0599550:CDS | 20.0% |
| !!! | ATTTTATTATGTAATGGATG+TGG | + | chr4_2:39342301-39342320 | Msa0599550:intron | 20.0% |
| !!! | ATATGTAATAGACACATTTT+GGG | + | chr4_2:39342870-39342889 | Msa0599550:CDS | 20.0% |
| ! | ATTGGAAACTAATGATTGTT+TGG | + | chr4_2:39341692-39341711 | Msa0599550:CDS | 25.0% |
| !!! | TTTACAATGTTGTTTCTTAC+AGG | - | chr4_2:39341939-39341958 | None:intergenic | 25.0% |
| ! | TTAGATCAAACAAGAATATG+GGG | + | chr4_2:39342057-39342076 | Msa0599550:CDS | 25.0% |
| ! | AATGAAAAAGATTCCAGAAA+AGG | + | chr4_2:39342672-39342691 | Msa0599550:intron | 25.0% |
| !! | CATATGTAATAGACACATTT+TGG | + | chr4_2:39342869-39342888 | Msa0599550:CDS | 25.0% |
| !!! | AGTATGAACTCATTTTTTGA+TGG | + | chr4_2:39342922-39342941 | Msa0599550:CDS | 25.0% |
| ! | ATTGGAAACTAATGATTGTT+TGG | + | chr4_2:39341692-39341711 | Msa0599550:CDS | 25.0% |
| !!! | TTTACAATGTTGTTTCTTAC+AGG | - | chr4_2:39341939-39341958 | None:intergenic | 25.0% |
| ! | TTAGATCAAACAAGAATATG+GGG | + | chr4_2:39342057-39342076 | Msa0599550:CDS | 25.0% |
| ! | AATGAAAAAGATTCCAGAAA+AGG | + | chr4_2:39342672-39342691 | Msa0599550:intron | 25.0% |
| !! | CATATGTAATAGACACATTT+TGG | + | chr4_2:39342869-39342888 | Msa0599550:CDS | 25.0% |
| !!! | AGTATGAACTCATTTTTTGA+TGG | + | chr4_2:39342922-39342941 | Msa0599550:CDS | 25.0% |
| ! | ATTTGAGTCTTGTGATGAAT+TGG | + | chr4_2:39341674-39341693 | Msa0599550:CDS | 30.0% |
| AGCATAATTCGTGTAATACT+CGG | - | chr4_2:39341787-39341806 | None:intergenic | 30.0% | |
| ATTACACGAATTATGCTCAA+CGG | + | chr4_2:39341790-39341809 | Msa0599550:CDS | 30.0% | |
| TAGATCAAACAAGAATATGG+GGG | + | chr4_2:39342058-39342077 | Msa0599550:CDS | 30.0% | |
| !! | TATTATGTAATGGATGTGGA+TGG | + | chr4_2:39342305-39342324 | Msa0599550:intron | 30.0% |
| ! | TCGATTACGAAATGTGTTTT+GGG | + | chr4_2:39342334-39342353 | Msa0599550:intron | 30.0% |
| ! | AGGATACTGAAACTTTTACT+TGG | + | chr4_2:39342515-39342534 | Msa0599550:intron | 30.0% |
| ! | TTACTTGGTTGTTTAAGACA+TGG | + | chr4_2:39342530-39342549 | Msa0599550:intron | 30.0% |
| AAAAAGATTCCAGAAAAGGT+TGG | + | chr4_2:39342676-39342695 | Msa0599550:intron | 30.0% | |
| ! | GCAAAAGTGATTTTATGATG+AGG | + | chr4_2:39342761-39342780 | Msa0599550:intron | 30.0% |
| ! | AAAGTGATTTTATGATGAGG+TGG | + | chr4_2:39342764-39342783 | Msa0599550:intron | 30.0% |
| ! | AAGTGATTTTATGATGAGGT+GGG | + | chr4_2:39342765-39342784 | Msa0599550:intron | 30.0% |
| ! | ACAAACTACATGATAATGCA+TGG | + | chr4_2:39342806-39342825 | Msa0599550:CDS | 30.0% |
| AATGTGTCTATTACATATGC+AGG | - | chr4_2:39342868-39342887 | None:intergenic | 30.0% | |
| ! | ATTTGAGTCTTGTGATGAAT+TGG | + | chr4_2:39341674-39341693 | Msa0599550:CDS | 30.0% |
| AGCATAATTCGTGTAATACT+CGG | - | chr4_2:39341787-39341806 | None:intergenic | 30.0% | |
| ATTACACGAATTATGCTCAA+CGG | + | chr4_2:39341790-39341809 | Msa0599550:CDS | 30.0% | |
| TAGATCAAACAAGAATATGG+GGG | + | chr4_2:39342058-39342077 | Msa0599550:CDS | 30.0% | |
| !! | TATTATGTAATGGATGTGGA+TGG | + | chr4_2:39342305-39342324 | Msa0599550:intron | 30.0% |
| ! | TCGATTACGAAATGTGTTTT+GGG | + | chr4_2:39342334-39342353 | Msa0599550:intron | 30.0% |
| ! | AGGATACTGAAACTTTTACT+TGG | + | chr4_2:39342515-39342534 | Msa0599550:intron | 30.0% |
| ! | TTACTTGGTTGTTTAAGACA+TGG | + | chr4_2:39342530-39342549 | Msa0599550:intron | 30.0% |
| AAAAAGATTCCAGAAAAGGT+TGG | + | chr4_2:39342676-39342695 | Msa0599550:intron | 30.0% | |
| ! | GCAAAAGTGATTTTATGATG+AGG | + | chr4_2:39342761-39342780 | Msa0599550:intron | 30.0% |
| ! | AAAGTGATTTTATGATGAGG+TGG | + | chr4_2:39342764-39342783 | Msa0599550:intron | 30.0% |
| ! | AAGTGATTTTATGATGAGGT+GGG | + | chr4_2:39342765-39342784 | Msa0599550:intron | 30.0% |
| ! | ACAAACTACATGATAATGCA+TGG | + | chr4_2:39342806-39342825 | Msa0599550:CDS | 30.0% |
| AATGTGTCTATTACATATGC+AGG | - | chr4_2:39342868-39342887 | None:intergenic | 30.0% | |
| TTACACGAATTATGCTCAAC+GGG | + | chr4_2:39341791-39341810 | Msa0599550:CDS | 35.0% | |
| AAGTTCAAAAAAGGGAGATG+AGG | + | chr4_2:39341836-39341855 | Msa0599550:CDS | 35.0% | |
| AGTTCAAAAAAGGGAGATGA+GGG | + | chr4_2:39341837-39341856 | Msa0599550:CDS | 35.0% | |
| TTAGAACTCAATGATCAAGC+TGG | + | chr4_2:39342098-39342117 | Msa0599550:CDS | 35.0% | |
| TAGAACTCAATGATCAAGCT+GGG | + | chr4_2:39342099-39342118 | Msa0599550:CDS | 35.0% | |
| CTGCAGGAACTATATAAACA+AGG | + | chr4_2:39342199-39342218 | Msa0599550:CDS | 35.0% | |
| ! | GTCGATTACGAAATGTGTTT+TGG | + | chr4_2:39342333-39342352 | Msa0599550:intron | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | + | chr4_2:39342370-39342389 | Msa0599550:intron | 35.0% |
| ! | ATGCCTTTTGCTCATTTTGT+TGG | + | chr4_2:39342439-39342458 | Msa0599550:intron | 35.0% |
| ACTCCAACAAAATGAGCAAA+AGG | - | chr4_2:39342445-39342464 | None:intergenic | 35.0% | |
| TGATCAGTGATTATGGCATT+TGG | - | chr4_2:39342580-39342599 | None:intergenic | 35.0% | |
| TCAGTCTTGATCAGTGATTA+TGG | - | chr4_2:39342587-39342606 | None:intergenic | 35.0% | |
| ! | ATGATAATGCATGGCTGAAA+GGG | + | chr4_2:39342815-39342834 | Msa0599550:CDS | 35.0% |
| TTACACGAATTATGCTCAAC+GGG | + | chr4_2:39341791-39341810 | Msa0599550:CDS | 35.0% | |
| AAGTTCAAAAAAGGGAGATG+AGG | + | chr4_2:39341836-39341855 | Msa0599550:CDS | 35.0% | |
| AGTTCAAAAAAGGGAGATGA+GGG | + | chr4_2:39341837-39341856 | Msa0599550:CDS | 35.0% | |
| TTAGAACTCAATGATCAAGC+TGG | + | chr4_2:39342098-39342117 | Msa0599550:CDS | 35.0% | |
| TAGAACTCAATGATCAAGCT+GGG | + | chr4_2:39342099-39342118 | Msa0599550:CDS | 35.0% | |
| CTGCAGGAACTATATAAACA+AGG | + | chr4_2:39342199-39342218 | Msa0599550:CDS | 35.0% | |
| ! | GTCGATTACGAAATGTGTTT+TGG | + | chr4_2:39342333-39342352 | Msa0599550:intron | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | + | chr4_2:39342370-39342389 | Msa0599550:intron | 35.0% |
| ! | ATGCCTTTTGCTCATTTTGT+TGG | + | chr4_2:39342439-39342458 | Msa0599550:intron | 35.0% |
| ACTCCAACAAAATGAGCAAA+AGG | - | chr4_2:39342445-39342464 | None:intergenic | 35.0% | |
| TGATCAGTGATTATGGCATT+TGG | - | chr4_2:39342580-39342599 | None:intergenic | 35.0% | |
| TCAGTCTTGATCAGTGATTA+TGG | - | chr4_2:39342587-39342606 | None:intergenic | 35.0% | |
| ! | ATGATAATGCATGGCTGAAA+GGG | + | chr4_2:39342815-39342834 | Msa0599550:CDS | 35.0% |
| AAGAAGAAACACCGTGTGTT+GGG | + | chr4_2:39341733-39341752 | Msa0599550:CDS | 40.0% | |
| GTTCAAAAAAGGGAGATGAG+GGG | + | chr4_2:39341838-39341857 | Msa0599550:CDS | 40.0% | |
| CTTTAGCATGTAATCGAGCT+AGG | + | chr4_2:39341874-39341893 | Msa0599550:CDS | 40.0% | |
| GCATACTCATGATCTAAGTC+CGG | + | chr4_2:39342019-39342038 | Msa0599550:intron | 40.0% | |
| CATACTCATGATCTAAGTCC+GGG | + | chr4_2:39342020-39342039 | Msa0599550:CDS | 40.0% | |
| ATACTCATGATCTAAGTCCG+GGG | + | chr4_2:39342021-39342040 | Msa0599550:CDS | 40.0% | |
| CTAAAATATCGTGCTTTCCC+CGG | - | chr4_2:39342041-39342060 | None:intergenic | 40.0% | |
| TCTCTAGTCGTTGAAGCAAA+TGG | + | chr4_2:39342146-39342165 | Msa0599550:CDS | 40.0% | |
| CTCTAGTCGTTGAAGCAAAT+GGG | + | chr4_2:39342147-39342166 | Msa0599550:CDS | 40.0% | |
| GGGTATGAGAATCTCACATT+TGG | + | chr4_2:39342167-39342186 | Msa0599550:CDS | 40.0% | |
| CATTTGGAGAAAAAGACTGC+AGG | + | chr4_2:39342183-39342202 | Msa0599550:CDS | 40.0% | |
| !! | TTTTGGGAGATGCAAGATGT+AGG | + | chr4_2:39342350-39342369 | Msa0599550:intron | 40.0% |
| TTTGGGAGATGCAAGATGTA+GGG | + | chr4_2:39342351-39342370 | Msa0599550:intron | 40.0% | |
| CACGATGAGTCTATGTTGTT+AGG | + | chr4_2:39342472-39342491 | Msa0599550:intron | 40.0% | |
| TTGTGCTCTGTTGTCAAATG+AGG | + | chr4_2:39342495-39342514 | Msa0599550:intron | 40.0% | |
| TCTTTCCAAAAGCTCGTCAT+CGG | + | chr4_2:39342632-39342651 | Msa0599550:intron | 40.0% | |
| ! | CATGATAATGCATGGCTGAA+AGG | + | chr4_2:39342814-39342833 | Msa0599550:CDS | 40.0% |
| ! | TATTTGTTGAGCGACATCGT+TGG | + | chr4_2:39342839-39342858 | Msa0599550:CDS | 40.0% |
| ! | ATTTGTTGAGCGACATCGTT+GGG | + | chr4_2:39342840-39342859 | Msa0599550:CDS | 40.0% |
| ! | GTAATAGACACATTTTGGGC+TGG | + | chr4_2:39342874-39342893 | Msa0599550:CDS | 40.0% |
| AAGAAGAAACACCGTGTGTT+GGG | + | chr4_2:39341733-39341752 | Msa0599550:CDS | 40.0% | |
| GTTCAAAAAAGGGAGATGAG+GGG | + | chr4_2:39341838-39341857 | Msa0599550:CDS | 40.0% | |
| CTTTAGCATGTAATCGAGCT+AGG | + | chr4_2:39341874-39341893 | Msa0599550:CDS | 40.0% | |
| GCATACTCATGATCTAAGTC+CGG | + | chr4_2:39342019-39342038 | Msa0599550:intron | 40.0% | |
| CATACTCATGATCTAAGTCC+GGG | + | chr4_2:39342020-39342039 | Msa0599550:CDS | 40.0% | |
| ATACTCATGATCTAAGTCCG+GGG | + | chr4_2:39342021-39342040 | Msa0599550:CDS | 40.0% | |
| CTAAAATATCGTGCTTTCCC+CGG | - | chr4_2:39342041-39342060 | None:intergenic | 40.0% | |
| TCTCTAGTCGTTGAAGCAAA+TGG | + | chr4_2:39342146-39342165 | Msa0599550:CDS | 40.0% | |
| CTCTAGTCGTTGAAGCAAAT+GGG | + | chr4_2:39342147-39342166 | Msa0599550:CDS | 40.0% | |
| GGGTATGAGAATCTCACATT+TGG | + | chr4_2:39342167-39342186 | Msa0599550:CDS | 40.0% | |
| CATTTGGAGAAAAAGACTGC+AGG | + | chr4_2:39342183-39342202 | Msa0599550:CDS | 40.0% | |
| !! | TTTTGGGAGATGCAAGATGT+AGG | + | chr4_2:39342350-39342369 | Msa0599550:intron | 40.0% |
| TTTGGGAGATGCAAGATGTA+GGG | + | chr4_2:39342351-39342370 | Msa0599550:intron | 40.0% | |
| CACGATGAGTCTATGTTGTT+AGG | + | chr4_2:39342472-39342491 | Msa0599550:intron | 40.0% | |
| TTGTGCTCTGTTGTCAAATG+AGG | + | chr4_2:39342495-39342514 | Msa0599550:intron | 40.0% | |
| TCTTTCCAAAAGCTCGTCAT+CGG | + | chr4_2:39342632-39342651 | Msa0599550:intron | 40.0% | |
| ! | CATGATAATGCATGGCTGAA+AGG | + | chr4_2:39342814-39342833 | Msa0599550:CDS | 40.0% |
| ! | TATTTGTTGAGCGACATCGT+TGG | + | chr4_2:39342839-39342858 | Msa0599550:CDS | 40.0% |
| ! | ATTTGTTGAGCGACATCGTT+GGG | + | chr4_2:39342840-39342859 | Msa0599550:CDS | 40.0% |
| ! | GTAATAGACACATTTTGGGC+TGG | + | chr4_2:39342874-39342893 | Msa0599550:CDS | 40.0% |
| GAAGAAGAAACACCGTGTGT+TGG | + | chr4_2:39341732-39341751 | Msa0599550:CDS | 45.0% | |
| CCAAATGACATCCCAACACA+CGG | - | chr4_2:39341747-39341766 | None:intergenic | 45.0% | |
| ACGAATTATGCTCAACGGGT+GGG | + | chr4_2:39341795-39341814 | Msa0599550:CDS | 45.0% | |
| ATATGGGGGCTCAAATGAAG+AGG | + | chr4_2:39342072-39342091 | Msa0599550:CDS | 45.0% | |
| AAGGTAAGACGACTACGACT+TGG | + | chr4_2:39342218-39342237 | Msa0599550:CDS | 45.0% | |
| AGGTAAGACGACTACGACTT+GGG | + | chr4_2:39342219-39342238 | Msa0599550:CDS | 45.0% | |
| ! | GAGTGTCTACCAACCTTTTC+TGG | - | chr4_2:39342688-39342707 | None:intergenic | 45.0% |
| GAAGAAGAAACACCGTGTGT+TGG | + | chr4_2:39341732-39341751 | Msa0599550:CDS | 45.0% | |
| CCAAATGACATCCCAACACA+CGG | - | chr4_2:39341747-39341766 | None:intergenic | 45.0% | |
| ACGAATTATGCTCAACGGGT+GGG | + | chr4_2:39341795-39341814 | Msa0599550:CDS | 45.0% | |
| ATATGGGGGCTCAAATGAAG+AGG | + | chr4_2:39342072-39342091 | Msa0599550:CDS | 45.0% | |
| AAGGTAAGACGACTACGACT+TGG | + | chr4_2:39342218-39342237 | Msa0599550:CDS | 45.0% | |
| AGGTAAGACGACTACGACTT+GGG | + | chr4_2:39342219-39342238 | Msa0599550:CDS | 45.0% | |
| ! | GAGTGTCTACCAACCTTTTC+TGG | - | chr4_2:39342688-39342707 | None:intergenic | 45.0% |
| CCGTGTGTTGGGATGTCATT+TGG | + | chr4_2:39341744-39341763 | Msa0599550:CDS | 50.0% | |
| CACGAATTATGCTCAACGGG+TGG | + | chr4_2:39341794-39341813 | Msa0599550:CDS | 50.0% | |
| !! | TATGCTCAACGGGTGGGTTT+TGG | + | chr4_2:39341801-39341820 | Msa0599550:CDS | 50.0% |
| TTCCAAAAGCTCGTCATCGG+TGG | + | chr4_2:39342635-39342654 | Msa0599550:intron | 50.0% | |
| CCGTGTGTTGGGATGTCATT+TGG | + | chr4_2:39341744-39341763 | Msa0599550:CDS | 50.0% | |
| CACGAATTATGCTCAACGGG+TGG | + | chr4_2:39341794-39341813 | Msa0599550:CDS | 50.0% | |
| !! | TATGCTCAACGGGTGGGTTT+TGG | + | chr4_2:39341801-39341820 | Msa0599550:CDS | 50.0% |
| TTCCAAAAGCTCGTCATCGG+TGG | + | chr4_2:39342635-39342654 | Msa0599550:intron | 50.0% | |
| TGGGGGCTCAAATGAAGAGG+AGG | + | chr4_2:39342075-39342094 | Msa0599550:CDS | 55.0% | |
| ! | AGACGACTACGACTTGGGAC+AGG | + | chr4_2:39342224-39342243 | Msa0599550:CDS | 55.0% |
| ! | CACCACCGATGACGAGCTTT+TGG | - | chr4_2:39342640-39342659 | None:intergenic | 55.0% |
| CTCGTCATCGGTGGTGCTTA+TGG | + | chr4_2:39342644-39342663 | Msa0599550:intron | 55.0% | |
| TGGGGGCTCAAATGAAGAGG+AGG | + | chr4_2:39342075-39342094 | Msa0599550:CDS | 55.0% | |
| ! | AGACGACTACGACTTGGGAC+AGG | + | chr4_2:39342224-39342243 | Msa0599550:CDS | 55.0% |
| ! | CACCACCGATGACGAGCTTT+TGG | - | chr4_2:39342640-39342659 | None:intergenic | 55.0% |
| CTCGTCATCGGTGGTGCTTA+TGG | + | chr4_2:39342644-39342663 | Msa0599550:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 39341666 | 39342975 | 39341666 | ID=Msa0599550;Name=Msa0599550 |
| chr4_2 | mRNA | 39341666 | 39342975 | 39341666 | ID=Msa0599550-mRNA-1;Parent=Msa0599550;Name=Msa0599550-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|0.66|0.5|0|3|0|233 |
| chr4_2 | exon | 39341666 | 39341938 | 39341666 | ID=Msa0599550-mRNA-1:exon:8599;Parent=Msa0599550-mRNA-1 |
| chr4_2 | exon | 39342020 | 39342274 | 39342020 | ID=Msa0599550-mRNA-1:exon:8600;Parent=Msa0599550-mRNA-1 |
| chr4_2 | exon | 39342802 | 39342975 | 39342802 | ID=Msa0599550-mRNA-1:exon:8601;Parent=Msa0599550-mRNA-1 |
| chr4_2 | CDS | 39341666 | 39341938 | 39341666 | ID=Msa0599550-mRNA-1:cds;Parent=Msa0599550-mRNA-1 |
| chr4_2 | CDS | 39342020 | 39342274 | 39342020 | ID=Msa0599550-mRNA-1:cds;Parent=Msa0599550-mRNA-1 |
| chr4_2 | CDS | 39342802 | 39342975 | 39342802 | ID=Msa0599550-mRNA-1:cds;Parent=Msa0599550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
