AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0600170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0600170 MtrunA17_Chr4g0025051 71.034 435 61 4 1 375 138 567 0.0 519
Msa0600170 MtrunA17_Chr4g0024391 62.338 462 99 5 1 392 32 488 4.70e-174 494
Msa0600170 MtrunA17_Chr4g0025061 60.043 463 100 7 1 392 163 611 1.47e-166 479
Msa0600170 MtrunA17_Chr2g0322391 43.980 407 194 11 1 390 201 590 4.43e-75 244
Msa0600170 MtrunA17_Chr2g0288871 42.359 373 140 14 21 352 192 530 1.42e-60 204
Msa0600170 MtrunA17_Chr4g0075201 43.046 302 140 6 61 339 172 464 1.01e-55 191
Msa0600170 MtrunA17_Chr3g0099641 44.348 230 107 5 127 351 231 444 7.76e-54 185
Msa0600170 MtrunA17_Chr7g0270831 45.188 239 102 7 132 368 201 412 4.76e-46 163
Msa0600170 MtrunA17_Chr2g0302391 50.000 166 71 3 118 276 182 342 5.50e-40 147
Msa0600170 MtrunA17_Chr7g0216891 29.395 347 161 12 101 370 160 499 2.66e-29 119
Msa0600170 MtrunA17_Chr4g0051181 33.712 264 142 6 132 366 228 487 4.35e-29 118
Msa0600170 MtrunA17_Chr4g0060271 34.194 310 130 8 132 375 240 541 2.19e-23 102
Msa0600170 MtrunA17_Chr5g0419241 51.899 79 38 0 99 177 29 107 1.82e-21 88.6
Msa0600170 MtrunA17_Chr4g0001361 33.775 151 73 5 124 274 139 262 1.61e-18 85.5
Msa0600170 MtrunA17_Chr7g0249311 44.444 108 54 3 107 212 350 453 3.60e-18 86.7
Msa0600170 MtrunA17_Chr7g0218081 44.000 100 52 2 123 222 386 481 1.36e-17 84.3
Msa0600170 MtrunA17_Chr3g0079691 50.602 83 37 2 130 212 478 556 1.80e-17 84.3
Msa0600170 MtrunA17_Chr5g0432161 42.373 118 58 4 100 212 370 482 2.67e-17 83.6
Msa0600170 MtrunA17_Chr7g0249301 49.367 79 36 2 134 212 279 353 4.40e-17 82.0
Msa0600170 MtrunA17_Chr3g0101131 39.286 112 61 3 120 228 388 495 6.32e-17 82.4
Msa0600170 MtrunA17_Chr2g0333851 44.444 81 40 2 133 211 153 230 1.28e-16 80.1
Msa0600170 MtrunA17_Chr5g0418191 43.000 100 49 3 117 212 286 381 1.41e-16 80.9
Msa0600170 MtrunA17_Chr7g0243891 48.810 84 39 2 129 212 356 435 3.64e-16 80.1
Msa0600170 MtrunA17_Chr4g0004911 47.561 82 39 2 129 210 318 395 5.10e-16 79.7
Msa0600170 MtrunA17_Chr5g0445311 48.193 83 39 2 130 212 347 425 6.38e-16 79.3
Msa0600170 MtrunA17_Chr3g0106491 40.385 104 58 2 108 211 326 425 9.77e-16 79.0
Msa0600170 MtrunA17_Chr4g0042831 35.659 129 68 4 94 212 216 339 1.45e-15 77.8
Msa0600170 MtrunA17_Chr4g0051881 34.783 115 71 2 134 248 165 275 4.92e-15 75.5
Msa0600170 MtrunA17_Chr3g0136961 43.590 78 41 1 130 207 121 195 2.70e-14 72.8
Msa0600170 MtrunA17_Chr1g0150801 48.052 77 36 2 132 208 87 159 3.29e-14 70.1
Msa0600170 MtrunA17_Chr1g0150281 38.947 95 55 1 132 226 125 216 3.30e-14 72.4
Msa0600170 MtrunA17_Chr7g0270191 39.175 97 51 3 132 228 130 218 4.74e-14 72.0
Msa0600170 MtrunA17_Chr7g0224801 47.945 73 34 2 137 209 83 151 4.79e-14 69.7
Msa0600170 MtrunA17_Chr1g0150271 44.928 69 35 1 142 210 96 161 1.11e-13 70.5
Msa0600170 MtrunA17_Chr1g0194481 41.975 81 43 2 134 214 145 221 2.39e-13 70.5
Msa0600170 MtrunA17_Chr2g0294231 40.964 83 45 2 132 214 188 266 2.55e-13 70.9
Msa0600170 MtrunA17_Chr5g0447701 45.679 81 40 2 132 212 237 313 2.78e-13 70.9
Msa0600170 MtrunA17_Chr8g0386241 33.981 103 64 2 112 214 68 166 4.01e-13 67.4
Msa0600170 MtrunA17_Chr5g0443131 41.975 81 43 2 134 214 144 220 1.33e-12 68.2
Msa0600170 MtrunA17_Chr7g0270051 36.283 113 64 3 126 236 30 136 1.42e-12 67.4
Msa0600170 MtrunA17_Chr7g0263531 39.286 84 47 2 127 210 341 420 1.53e-12 68.6
Msa0600170 MtrunA17_Chr3g0129321 46.154 78 38 2 134 211 105 178 3.78e-12 65.1
Msa0600170 MtrunA17_Chr2g0293481 41.026 78 43 1 143 220 263 337 5.38e-12 67.0
Msa0600170 MtrunA17_Chr8g0383251 44.156 77 39 2 134 210 95 167 1.30e-11 63.2
Msa0600170 MtrunA17_Chr4g0068541 39.024 82 46 2 133 214 194 271 1.58e-11 65.5
Msa0600170 MtrunA17_Chr4g0053281 47.059 68 33 1 145 212 264 328 1.71e-11 65.1
Msa0600170 MtrunA17_Chr4g0074001 42.169 83 44 2 132 214 344 422 2.01e-11 65.5
Msa0600170 MtrunA17_Chr8g0387501 42.667 75 40 2 146 220 128 199 2.21e-11 63.9
Msa0600170 MtrunA17_Chr8g0335811 40.244 82 45 2 126 207 133 210 4.51e-11 62.4
Msa0600170 MtrunA17_Chr2g0289181 31.250 144 84 4 142 274 9 148 6.53e-11 62.0
Msa0600170 MtrunA17_Chr5g0418781 39.506 81 45 2 127 207 104 180 8.10e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0600170 AT4G04450.2 44.179 335 155 10 39 351 85 409 1.73e-65 215
Msa0600170 AT4G04450.1 44.179 335 155 10 39 351 179 503 1.12e-64 215
Msa0600170 AT1G62300.1 40.548 365 158 13 38 371 216 552 4.01e-56 193
Msa0600170 AT4G22070.4 47.791 249 114 5 38 275 180 423 8.44e-50 176
Msa0600170 AT4G22070.3 47.791 249 114 5 38 275 180 423 8.44e-50 176
Msa0600170 AT4G22070.2 47.791 249 114 5 38 275 180 423 8.44e-50 176
Msa0600170 AT4G22070.1 47.791 249 114 5 38 275 180 423 8.44e-50 176
Msa0600170 AT4G01720.1 43.750 240 92 6 132 348 224 443 6.94e-37 140
Msa0600170 AT1G68150.1 47.101 138 60 2 104 231 182 316 2.68e-33 128
Msa0600170 AT1G69810.2 43.529 170 84 4 118 285 116 275 6.81e-31 120
Msa0600170 AT1G69810.1 43.529 170 84 4 118 285 174 333 1.21e-30 121
Msa0600170 AT1G18860.1 41.667 192 87 4 130 309 222 400 5.19e-27 112
Msa0600170 AT5G15130.1 31.538 260 132 9 132 352 212 464 2.14e-24 105
Msa0600170 AT5G15130.2 31.538 260 132 9 132 352 170 422 2.59e-24 104
Msa0600170 AT5G56270.1 49.398 83 38 2 130 212 470 548 1.31e-16 82.0
Msa0600170 AT1G80840.1 41.111 90 45 3 127 211 121 207 3.89e-16 79.0
Msa0600170 AT2G38470.1 45.238 84 42 2 129 212 344 423 1.16e-15 79.0
Msa0600170 AT1G13960.2 46.341 82 40 2 129 210 238 315 1.26e-15 78.2
Msa0600170 AT1G13960.1 46.341 82 40 2 129 210 391 468 1.28e-15 79.0
Msa0600170 AT1G29860.1 40.206 97 50 3 132 228 121 209 2.27e-15 76.3
Msa0600170 AT2G03340.1 43.333 90 47 2 123 212 391 476 4.50e-15 77.0
Msa0600170 AT4G18170.1 36.066 122 64 3 132 243 157 274 8.76e-15 75.1
Msa0600170 AT1G64000.1 40.404 99 51 3 129 227 96 186 8.92e-15 72.8
Msa0600170 AT4G26640.5 44.578 83 42 2 130 212 188 266 1.12e-14 75.5
Msa0600170 AT4G26640.6 44.578 83 42 2 130 212 188 266 1.12e-14 75.5
Msa0600170 AT4G26640.4 44.578 83 42 2 130 212 188 266 1.12e-14 75.5
Msa0600170 AT4G26640.3 44.578 83 42 2 130 212 188 266 1.12e-14 75.5
Msa0600170 AT2G25000.3 38.043 92 54 1 122 213 100 188 1.52e-14 73.2
Msa0600170 AT4G26640.7 44.578 83 42 2 130 212 324 402 1.53e-14 75.5
Msa0600170 AT5G41570.1 38.235 102 55 3 134 235 85 178 1.66e-14 71.6
Msa0600170 AT4G26640.2 44.578 83 42 2 130 212 364 442 1.73e-14 75.5
Msa0600170 AT2G25000.2 38.043 92 54 1 122 213 78 166 1.76e-14 72.8
Msa0600170 AT2G25000.4 38.043 92 54 1 122 213 78 166 1.76e-14 72.8
Msa0600170 AT4G26640.1 44.578 83 42 2 130 212 292 370 1.83e-14 75.1
Msa0600170 AT2G25000.1 38.043 92 54 1 122 213 121 209 2.07e-14 73.2
Msa0600170 AT3G01080.2 42.045 88 47 2 123 210 320 403 2.16e-14 75.1
Msa0600170 AT5G07100.2 42.045 88 47 2 127 214 121 204 2.20e-14 72.4
Msa0600170 AT5G07100.4 42.045 88 47 2 127 214 121 204 2.20e-14 72.4
Msa0600170 AT5G07100.5 42.045 88 47 2 127 214 121 204 2.20e-14 72.4
Msa0600170 AT5G07100.3 42.045 88 47 2 127 214 121 204 2.20e-14 72.4
Msa0600170 AT3G01080.1 42.045 88 47 2 123 210 282 365 3.03e-14 74.3
Msa0600170 AT5G07100.1 42.045 88 47 2 127 214 214 297 4.09e-14 73.2
Msa0600170 AT5G26170.1 45.333 75 37 2 133 207 99 169 5.67e-14 70.1
Msa0600170 AT5G46350.1 37.383 107 63 2 134 240 170 272 9.45e-14 72.0
Msa0600170 AT4G31800.2 39.759 83 47 1 146 228 110 189 1.06e-13 70.9
Msa0600170 AT4G31800.1 39.759 83 47 1 146 228 175 254 1.17e-13 71.6
Msa0600170 AT2G04880.2 38.298 94 54 2 117 210 253 342 1.36e-13 72.4
Msa0600170 AT4G30935.1 34.783 138 85 3 104 240 288 421 1.38e-13 72.4
Msa0600170 AT2G04880.1 38.298 94 54 2 117 210 277 366 1.88e-13 72.0
Msa0600170 AT5G13080.1 46.053 76 37 2 134 209 54 125 2.25e-13 67.4
Msa0600170 AT2G30250.1 37.755 98 56 3 117 214 299 391 3.67e-13 70.9
Msa0600170 AT5G64810.1 44.792 96 46 3 115 207 75 166 6.42e-13 67.4
Msa0600170 AT4G26440.1 45.570 79 39 2 134 212 359 433 9.33e-13 70.1
Msa0600170 AT5G49520.1 39.759 83 46 2 132 214 206 284 1.07e-12 69.3
Msa0600170 AT3G01970.1 45.333 75 37 2 133 207 51 121 1.33e-12 65.5
Msa0600170 AT2G47260.1 39.535 86 48 2 132 217 159 240 1.67e-12 68.6
Msa0600170 AT2G46130.1 41.463 82 44 2 127 208 10 87 2.96e-12 63.2
Msa0600170 AT1G55600.1 41.772 79 42 2 134 212 294 368 3.68e-12 68.2
Msa0600170 AT2G34830.1 41.558 77 42 1 141 217 209 282 2.67e-11 65.5
Msa0600170 AT1G30650.1 41.558 77 42 1 141 217 211 284 2.86e-11 65.1
Msa0600170 AT3G62340.1 44.156 77 39 2 134 210 105 177 2.86e-11 63.9
Msa0600170 AT4G01250.1 42.308 78 42 1 143 220 124 198 2.92e-11 64.3
Msa0600170 AT2G34830.2 41.558 77 42 1 141 217 218 291 3.09e-11 65.1
Msa0600170 AT4G23550.1 40.741 81 45 1 142 222 135 212 3.11e-11 64.3
Msa0600170 AT2G30590.1 48.571 70 32 2 145 213 311 377 5.10e-11 64.3

Find 73 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAAAATTGCAGGAAAATT+TGG 0.122453 4_2:+41047770 None:intergenic
GAAGTTTATGATGGAAAATT+TGG 0.188184 4_2:-41049498 Msa0600170:CDS
TTGACTGCCCGAGCAATATT+TGG 0.235969 4_2:+41047812 None:intergenic
GCAGAAGTCTGACGGTTTAA+AGG 0.243460 4_2:+41047917 None:intergenic
AATAAGGTTATGGAAGTTAA+AGG 0.322766 4_2:-41049525 Msa0600170:CDS
ACTGGTGCCAAGGAAAATTA+TGG 0.327217 4_2:-41049565 Msa0600170:CDS
TCAAGTGTAATGGTTGGAAA+TGG 0.343703 4_2:+41047992 None:intergenic
AAAGGAGTTTGAAACTGATC+TGG 0.348918 4_2:+41047935 None:intergenic
TGCATTCAATTGTCCATCAT+TGG 0.350387 4_2:+41048078 None:intergenic
AACTGATCTGGGTTCCTTTG+TGG 0.354361 4_2:+41047947 None:intergenic
TTGTGTCCCTTCAAAACTAT+TGG 0.363975 4_2:-41047840 Msa0600170:CDS
GGATGTCAACGGAGAAAGTA+TGG 0.364839 4_2:-41048981 Msa0600170:CDS
AAAAGGAAATTTGTTGATGC+TGG 0.369100 4_2:-41049438 Msa0600170:CDS
GATGCAAGATTGTAAGGTTA+AGG 0.371759 4_2:-41049655 Msa0600170:CDS
GCCATTTCTTTGGCTGCTGC+AGG 0.373631 4_2:+41048151 None:intergenic
TCTTGGATCAGCTACTAATA+AGG 0.377634 4_2:-41049541 Msa0600170:CDS
TGCTGGGTTGGCTACTAATA+AGG 0.384058 4_2:-41049421 Msa0600170:CDS
CTGCAACGATAATACGCTTT+AGG 0.384404 4_2:+41048930 None:intergenic
CCAAGGAAAATTATGGATCT+TGG 0.393916 4_2:-41049558 Msa0600170:CDS
TCTTTGGCTGCTGCAGGTAA+AGG 0.394516 4_2:+41048157 None:intergenic
AAGGTCAAAGAAGTGTTTAA+TGG 0.396617 4_2:-41049402 Msa0600170:intron
TAACATCCTCATTCTTACTT+AGG 0.406214 4_2:+41049184 None:intergenic
CAAGTGTAATGGTTGGAAAT+GGG 0.411437 4_2:+41047993 None:intergenic
CTTTGGCTGCTGCAGGTAAA+GGG 0.420375 4_2:+41048158 None:intergenic
ATCAGCTACTAATAAGGTTA+TGG 0.421535 4_2:-41049535 Msa0600170:CDS
GCTACTCTTACTTCCATGAT+TGG 0.436300 4_2:-41047746 Msa0600170:CDS
AGAGTAGCTGATAAAATTGC+AGG 0.438645 4_2:+41047761 None:intergenic
GGGTTCCTTTGTGGAGTAGT+TGG 0.444283 4_2:+41047956 None:intergenic
CGATAATACGCTTTAGGACA+TGG 0.452989 4_2:+41048936 None:intergenic
GAAAGTGATGCAAGATTGTA+AGG 0.455429 4_2:-41049661 Msa0600170:CDS
GTAGCAGCAGTAGTGTTGTT+TGG 0.455433 4_2:+41047713 None:intergenic
ACCTGCAGCAGCCAAAGAAA+TGG 0.461509 4_2:-41048152 Msa0600170:CDS
ACAGGTAGCAACAACAAAGA+TGG 0.479242 4_2:-41047632 Msa0600170:CDS
AAAGGACAAGAAGTTTATGA+TGG 0.480807 4_2:-41049507 Msa0600170:CDS
TGGTTGCTCAGTCCGAAAAC+AGG 0.487721 4_2:-41048898 Msa0600170:CDS
AATGGGAACAATGTCGCAAA+AGG 0.491408 4_2:-41047674 Msa0600170:CDS
GGCAGTTCCAAATATTGCTC+GGG 0.494464 4_2:-41047819 Msa0600170:CDS
ACATCAACATCAACCAATGA+TGG 0.495730 4_2:-41048091 Msa0600170:CDS
AGCTGAGAATGGTGGAGTAC+TGG 0.504825 4_2:-41049583 Msa0600170:CDS
TGGCAGTTCCAAATATTGCT+CGG 0.513777 4_2:-41047820 Msa0600170:CDS
AAGGAGTTTGAAACTGATCT+GGG 0.518182 4_2:+41047936 None:intergenic
TGGCTGAGTATCACCAATCA+TGG 0.521571 4_2:+41047733 None:intergenic
ATGGTGGAGAATTAGTGAAA+AGG 0.530673 4_2:-41049455 Msa0600170:CDS
GAAATTTGTTGATGCTGGGT+TGG 0.532637 4_2:-41049433 Msa0600170:CDS
AGGAATTTGCAGAAGTCTGA+CGG 0.535434 4_2:+41047909 None:intergenic
GTTGTCATCACAACATATGA+AGG 0.537947 4_2:-41048193 Msa0600170:CDS
AAGCTTCGAGGAGGCTTCGA+AGG 0.539694 4_2:-41049214 Msa0600170:CDS
AGATTACAATTACATGCGAA+TGG 0.540869 4_2:-41049691 None:intergenic
TTGAGTATAATCAAGTGTAA+TGG 0.545850 4_2:+41047982 None:intergenic
AAAGGAAATTTGTTGATGCT+GGG 0.547546 4_2:-41049437 Msa0600170:CDS
TGTAAGGTTAAGGAAGTCAA+AGG 0.554949 4_2:-41049645 Msa0600170:CDS
GTTAGTCCTAAGTAAGAATG+AGG 0.558419 4_2:-41049190 Msa0600170:CDS
TTATTGTGTTAGATCACTGA+TGG 0.564668 4_2:-41049002 Msa0600170:intron
AAAATTTGGATTAGCAGCAA+TGG 0.568779 4_2:+41047784 None:intergenic
GTCGCAAAAGGTAATAACAA+TGG 0.570392 4_2:-41047662 Msa0600170:CDS
TTGAGAGATCAGAGAAGCTG+AGG 0.571353 4_2:+41047889 None:intergenic
GTATAATCAAGTGTAATGGT+TGG 0.576480 4_2:+41047986 None:intergenic
AATAACAATGGAAATATCAC+AGG 0.579865 4_2:-41047650 Msa0600170:CDS
CAGGTAGCAACAACAAAGAT+GGG 0.581390 4_2:-41047631 Msa0600170:CDS
AAGTGTAATGGTTGGAAATG+GGG 0.590397 4_2:+41047994 None:intergenic
ATCAGCGTTGAAAAGCTTCG+AGG 0.603132 4_2:-41049226 Msa0600170:CDS
TAGCAACAACAAAGATGGGA+AGG 0.605972 4_2:-41047627 Msa0600170:CDS
GATAATACGCTTTAGGACAT+GGG 0.608155 4_2:+41048937 None:intergenic
ATGGTGGAGTACTGGTGCCA+AGG 0.608936 4_2:-41049575 Msa0600170:CDS
TATCGTTGCAGCATGGCCCG+TGG 0.614367 4_2:-41048918 Msa0600170:CDS
TGGCTGCTGCAGGTAAAGGG+TGG 0.624702 4_2:+41048161 None:intergenic
CAATACTTGAAGAACAAGGA+AGG 0.633210 4_2:+41048035 None:intergenic
AGCGTATTATCGTTGCAGCA+TGG 0.651842 4_2:-41048925 Msa0600170:CDS
TGTTAATGTTGAAAATGTTG+AGG 0.658284 4_2:-41049166 Msa0600170:CDS
AGATCACTGATGGATGTCAA+CGG 0.673680 4_2:-41048992 Msa0600170:CDS
AATCTCCAACTACTCCACAA+AGG 0.678231 4_2:-41047961 Msa0600170:CDS
AGCGTTGAAAAGCTTCGAGG+AGG 0.678382 4_2:-41049223 Msa0600170:CDS
GTTGCAATACTTGAAGAACA+AGG 0.694121 4_2:+41048031 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGCATATTTAAATTTTTAA+TGG + chr4_2:41048873-41048892 None:intergenic 10.0%
!! ACTGATAATAATAATAATAA+TGG - chr4_2:41049608-41049627 Msa0600170:CDS 10.0%
!! CTGATAATAATAATAATAAT+GGG - chr4_2:41049609-41049628 Msa0600170:CDS 10.0%
!!! ATGCATATTTAAATTTTTAA+TGG + chr4_2:41048873-41048892 None:intergenic 10.0%
!! ACTGATAATAATAATAATAA+TGG - chr4_2:41049608-41049627 Msa0600170:CDS 10.0%
!! CTGATAATAATAATAATAAT+GGG - chr4_2:41049609-41049628 Msa0600170:CDS 10.0%
!!! TTTAAATATGCATTGATGTT+TGG - chr4_2:41048880-41048899 Msa0600170:CDS 20.0%
!! TAGTTAAAATACTAATGAAG+TGG - chr4_2:41049010-41049029 Msa0600170:intron 20.0%
!!! TTTAAATATGCATTGATGTT+TGG - chr4_2:41048880-41048899 Msa0600170:CDS 20.0%
!! TAGTTAAAATACTAATGAAG+TGG - chr4_2:41049010-41049029 Msa0600170:intron 20.0%
!! AAAGGAAAAGAAGTTTTTGA+TGG - chr4_2:41047673-41047692 Msa0600170:CDS 25.0%
! AATAAGGTTATGGAAGTTAA+AGG - chr4_2:41047775-41047794 Msa0600170:CDS 25.0%
!! GAAGTTTATGATGGAAAATT+TGG - chr4_2:41047802-41047821 Msa0600170:CDS 25.0%
! GAGAAAAAGAGAATGAATAA+TGG - chr4_2:41047826-41047845 Msa0600170:CDS 25.0%
! AAAAAGAGAATGAATAATGG+TGG - chr4_2:41047829-41047848 Msa0600170:CDS 25.0%
! AAAAAGAGAATTGAGAATGA+TGG - chr4_2:41047934-41047953 Msa0600170:CDS 25.0%
! CCTAACTAATCTTTACTTAT+AGG + chr4_2:41048054-41048073 None:intergenic 25.0%
!! CCTATAAGTAAAGATTAGTT+AGG - chr4_2:41048051-41048070 Msa0600170:CDS 25.0%
! TGTTAATGTTGAAAATGTTG+AGG - chr4_2:41048134-41048153 Msa0600170:CDS 25.0%
!!! ACACTTTAAGATACTTACAA+TGG + chr4_2:41048208-41048227 None:intergenic 25.0%
! AAGATAATGATTAAAGACCA+AGG + chr4_2:41048637-41048656 None:intergenic 25.0%
! TTCAAACTTAACAAGTACAA+AGG - chr4_2:41049066-41049085 Msa0600170:intron 25.0%
! TTGAGTATAATCAAGTGTAA+TGG + chr4_2:41049321-41049340 None:intergenic 25.0%
!!! AATTTTGATTGGTTCTGATT+AGG + chr4_2:41049440-41049459 None:intergenic 25.0%
! GATAAAATTGCAGGAAAATT+TGG + chr4_2:41049533-41049552 None:intergenic 25.0%
! AATAACAATGGAAATATCAC+AGG - chr4_2:41049650-41049669 Msa0600170:CDS 25.0%
!! AAAGGAAAAGAAGTTTTTGA+TGG - chr4_2:41047673-41047692 Msa0600170:CDS 25.0%
! AATAAGGTTATGGAAGTTAA+AGG - chr4_2:41047775-41047794 Msa0600170:CDS 25.0%
!! GAAGTTTATGATGGAAAATT+TGG - chr4_2:41047802-41047821 Msa0600170:CDS 25.0%
! GAGAAAAAGAGAATGAATAA+TGG - chr4_2:41047826-41047845 Msa0600170:CDS 25.0%
! AAAAAGAGAATGAATAATGG+TGG - chr4_2:41047829-41047848 Msa0600170:CDS 25.0%
! AAAAAGAGAATTGAGAATGA+TGG - chr4_2:41047934-41047953 Msa0600170:CDS 25.0%
! CCTAACTAATCTTTACTTAT+AGG + chr4_2:41048054-41048073 None:intergenic 25.0%
!! CCTATAAGTAAAGATTAGTT+AGG - chr4_2:41048051-41048070 Msa0600170:CDS 25.0%
! TGTTAATGTTGAAAATGTTG+AGG - chr4_2:41048134-41048153 Msa0600170:CDS 25.0%
!!! ACACTTTAAGATACTTACAA+TGG + chr4_2:41048208-41048227 None:intergenic 25.0%
! AAGATAATGATTAAAGACCA+AGG + chr4_2:41048637-41048656 None:intergenic 25.0%
! TTCAAACTTAACAAGTACAA+AGG - chr4_2:41049066-41049085 Msa0600170:intron 25.0%
! TTGAGTATAATCAAGTGTAA+TGG + chr4_2:41049321-41049340 None:intergenic 25.0%
!!! AATTTTGATTGGTTCTGATT+AGG + chr4_2:41049440-41049459 None:intergenic 25.0%
! GATAAAATTGCAGGAAAATT+TGG + chr4_2:41049533-41049552 None:intergenic 25.0%
! AATAACAATGGAAATATCAC+AGG - chr4_2:41049650-41049669 Msa0600170:CDS 25.0%
GAGAAAAAAATAGCTGAGAA+TGG - chr4_2:41047706-41047725 Msa0600170:CDS 30.0%
AAAAAAATAGCTGAGAATGG+TGG - chr4_2:41047709-41047728 Msa0600170:CDS 30.0%
ATCAGCTACTAATAAGGTTA+TGG - chr4_2:41047765-41047784 Msa0600170:CDS 30.0%
AAAGGACAAGAAGTTTATGA+TGG - chr4_2:41047793-41047812 Msa0600170:CDS 30.0%
!! AAAAGGAAATTTGTTGATGC+TGG - chr4_2:41047862-41047881 Msa0600170:CDS 30.0%
!! AAAGGAAATTTGTTGATGCT+GGG - chr4_2:41047863-41047882 Msa0600170:CDS 30.0%
!! AAGGTCAAAGAAGTGTTTAA+TGG - chr4_2:41047898-41047917 Msa0600170:CDS 30.0%
! TATAGGTTTTCTCATTGATG+AGG + chr4_2:41048037-41048056 None:intergenic 30.0%
TAACATCCTCATTCTTACTT+AGG + chr4_2:41048119-41048138 None:intergenic 30.0%
TTATTGTGTTAGATCACTGA+TGG - chr4_2:41048298-41048317 Msa0600170:intron 30.0%
! AGAAGAAAGTTACCTGTTTT+CGG + chr4_2:41048417-41048436 None:intergenic 30.0%
TAATGCGAAAGCAATCATTA+AGG + chr4_2:41048488-41048507 None:intergenic 30.0%
!!! ACATGCATATTTTAAGACCT+TGG - chr4_2:41048617-41048636 Msa0600170:intron 30.0%
AATTTGATATACATTGCACG+AGG - chr4_2:41048720-41048739 Msa0600170:intron 30.0%
! CATGTTTCTATGCTAGAAAA+TGG - chr4_2:41048791-41048810 Msa0600170:intron 30.0%
! TCTATGCTAGAAAATGGATT+TGG - chr4_2:41048797-41048816 Msa0600170:intron 30.0%
CAACAAACTCAAATCCAAAA+TGG - chr4_2:41048970-41048989 Msa0600170:CDS 30.0%
!!! GTATTTTAACTAACCTAGCT+AGG + chr4_2:41049002-41049021 None:intergenic 30.0%
!!! AGTTGTTTTTGCCATTTCTT+TGG + chr4_2:41049162-41049181 None:intergenic 30.0%
GTATAATCAAGTGTAATGGT+TGG + chr4_2:41049317-41049336 None:intergenic 30.0%
!! AAGGGACACAAAATTTTGAT+TGG + chr4_2:41049451-41049470 None:intergenic 30.0%
!! AAAATTTGGATTAGCAGCAA+TGG + chr4_2:41049519-41049538 None:intergenic 30.0%
GAGAAAAAAATAGCTGAGAA+TGG - chr4_2:41047706-41047725 Msa0600170:CDS 30.0%
AAAAAAATAGCTGAGAATGG+TGG - chr4_2:41047709-41047728 Msa0600170:CDS 30.0%
ATCAGCTACTAATAAGGTTA+TGG - chr4_2:41047765-41047784 Msa0600170:CDS 30.0%
AAAGGACAAGAAGTTTATGA+TGG - chr4_2:41047793-41047812 Msa0600170:CDS 30.0%
!! AAAAGGAAATTTGTTGATGC+TGG - chr4_2:41047862-41047881 Msa0600170:CDS 30.0%
!! AAAGGAAATTTGTTGATGCT+GGG - chr4_2:41047863-41047882 Msa0600170:CDS 30.0%
!! AAGGTCAAAGAAGTGTTTAA+TGG - chr4_2:41047898-41047917 Msa0600170:CDS 30.0%
! TATAGGTTTTCTCATTGATG+AGG + chr4_2:41048037-41048056 None:intergenic 30.0%
TAACATCCTCATTCTTACTT+AGG + chr4_2:41048119-41048138 None:intergenic 30.0%
TTATTGTGTTAGATCACTGA+TGG - chr4_2:41048298-41048317 Msa0600170:intron 30.0%
! AGAAGAAAGTTACCTGTTTT+CGG + chr4_2:41048417-41048436 None:intergenic 30.0%
TAATGCGAAAGCAATCATTA+AGG + chr4_2:41048488-41048507 None:intergenic 30.0%
!!! ACATGCATATTTTAAGACCT+TGG - chr4_2:41048617-41048636 Msa0600170:intron 30.0%
AATTTGATATACATTGCACG+AGG - chr4_2:41048720-41048739 Msa0600170:intron 30.0%
! CATGTTTCTATGCTAGAAAA+TGG - chr4_2:41048791-41048810 Msa0600170:intron 30.0%
! TCTATGCTAGAAAATGGATT+TGG - chr4_2:41048797-41048816 Msa0600170:intron 30.0%
CAACAAACTCAAATCCAAAA+TGG - chr4_2:41048970-41048989 Msa0600170:CDS 30.0%
!!! GTATTTTAACTAACCTAGCT+AGG + chr4_2:41049002-41049021 None:intergenic 30.0%
!!! AGTTGTTTTTGCCATTTCTT+TGG + chr4_2:41049162-41049181 None:intergenic 30.0%
GTATAATCAAGTGTAATGGT+TGG + chr4_2:41049317-41049336 None:intergenic 30.0%
!! AAGGGACACAAAATTTTGAT+TGG + chr4_2:41049451-41049470 None:intergenic 30.0%
!! AAAATTTGGATTAGCAGCAA+TGG + chr4_2:41049519-41049538 None:intergenic 30.0%
GAAAGTGATGCAAGATTGTA+AGG - chr4_2:41047639-41047658 Msa0600170:CDS 35.0%
GATGCAAGATTGTAAGGTTA+AGG - chr4_2:41047645-41047664 Msa0600170:CDS 35.0%
TGTAAGGTTAAGGAAGTCAA+AGG - chr4_2:41047655-41047674 Msa0600170:CDS 35.0%
! CCAAGATCCATAATTTTCCT+TGG + chr4_2:41047745-41047764 None:intergenic 35.0%
CCAAGGAAAATTATGGATCT+TGG - chr4_2:41047742-41047761 Msa0600170:CDS 35.0%
TCTTGGATCAGCTACTAATA+AGG - chr4_2:41047759-41047778 Msa0600170:CDS 35.0%
! ATGGTGGAGAATTAGTGAAA+AGG - chr4_2:41047845-41047864 Msa0600170:CDS 35.0%
! AATTGAGAATGATGGAGAGT+TGG - chr4_2:41047942-41047961 Msa0600170:CDS 35.0%
GTTAGTCCTAAGTAAGAATG+AGG - chr4_2:41048110-41048129 Msa0600170:CDS 35.0%
!! GATAATACGCTTTAGGACAT+GGG + chr4_2:41048366-41048385 None:intergenic 35.0%
!! AGAAACATGAGCTTTGAAAG+TGG + chr4_2:41048780-41048799 None:intergenic 35.0%
! TAAATGCATGGATTGCAGAA+TGG + chr4_2:41048830-41048849 None:intergenic 35.0%
TTTAATGGTCATCGACGTAA+TGG + chr4_2:41048858-41048877 None:intergenic 35.0%
GTTGTCATCACAACATATGA+AGG - chr4_2:41049107-41049126 Msa0600170:intron 35.0%
ACATCAACATCAACCAATGA+TGG - chr4_2:41049209-41049228 Msa0600170:CDS 35.0%
TGCATTCAATTGTCCATCAT+TGG + chr4_2:41049225-41049244 None:intergenic 35.0%
CAATACTTGAAGAACAAGGA+AGG + chr4_2:41049268-41049287 None:intergenic 35.0%
GTTGCAATACTTGAAGAACA+AGG + chr4_2:41049272-41049291 None:intergenic 35.0%
AAGTGTAATGGTTGGAAATG+GGG + chr4_2:41049309-41049328 None:intergenic 35.0%
CAAGTGTAATGGTTGGAAAT+GGG + chr4_2:41049310-41049329 None:intergenic 35.0%
TCAAGTGTAATGGTTGGAAA+TGG + chr4_2:41049311-41049330 None:intergenic 35.0%
! AAGGAGTTTGAAACTGATCT+GGG + chr4_2:41049367-41049386 None:intergenic 35.0%
! AAAGGAGTTTGAAACTGATC+TGG + chr4_2:41049368-41049387 None:intergenic 35.0%
TTGTGTCCCTTCAAAACTAT+TGG - chr4_2:41049460-41049479 Msa0600170:CDS 35.0%
!!! GAACTGCCAATAGTTTTGAA+GGG + chr4_2:41049469-41049488 None:intergenic 35.0%
AGAGTAGCTGATAAAATTGC+AGG + chr4_2:41049542-41049561 None:intergenic 35.0%
GTCGCAAAAGGTAATAACAA+TGG - chr4_2:41049638-41049657 Msa0600170:CDS 35.0%
GAAAGTGATGCAAGATTGTA+AGG - chr4_2:41047639-41047658 Msa0600170:CDS 35.0%
GATGCAAGATTGTAAGGTTA+AGG - chr4_2:41047645-41047664 Msa0600170:CDS 35.0%
TGTAAGGTTAAGGAAGTCAA+AGG - chr4_2:41047655-41047674 Msa0600170:CDS 35.0%
! CCAAGATCCATAATTTTCCT+TGG + chr4_2:41047745-41047764 None:intergenic 35.0%
CCAAGGAAAATTATGGATCT+TGG - chr4_2:41047742-41047761 Msa0600170:CDS 35.0%
TCTTGGATCAGCTACTAATA+AGG - chr4_2:41047759-41047778 Msa0600170:CDS 35.0%
! ATGGTGGAGAATTAGTGAAA+AGG - chr4_2:41047845-41047864 Msa0600170:CDS 35.0%
! AATTGAGAATGATGGAGAGT+TGG - chr4_2:41047942-41047961 Msa0600170:CDS 35.0%
GTTAGTCCTAAGTAAGAATG+AGG - chr4_2:41048110-41048129 Msa0600170:CDS 35.0%
!! GATAATACGCTTTAGGACAT+GGG + chr4_2:41048366-41048385 None:intergenic 35.0%
!! AGAAACATGAGCTTTGAAAG+TGG + chr4_2:41048780-41048799 None:intergenic 35.0%
! TAAATGCATGGATTGCAGAA+TGG + chr4_2:41048830-41048849 None:intergenic 35.0%
TTTAATGGTCATCGACGTAA+TGG + chr4_2:41048858-41048877 None:intergenic 35.0%
GTTGTCATCACAACATATGA+AGG - chr4_2:41049107-41049126 Msa0600170:intron 35.0%
ACATCAACATCAACCAATGA+TGG - chr4_2:41049209-41049228 Msa0600170:CDS 35.0%
TGCATTCAATTGTCCATCAT+TGG + chr4_2:41049225-41049244 None:intergenic 35.0%
CAATACTTGAAGAACAAGGA+AGG + chr4_2:41049268-41049287 None:intergenic 35.0%
GTTGCAATACTTGAAGAACA+AGG + chr4_2:41049272-41049291 None:intergenic 35.0%
AAGTGTAATGGTTGGAAATG+GGG + chr4_2:41049309-41049328 None:intergenic 35.0%
CAAGTGTAATGGTTGGAAAT+GGG + chr4_2:41049310-41049329 None:intergenic 35.0%
TCAAGTGTAATGGTTGGAAA+TGG + chr4_2:41049311-41049330 None:intergenic 35.0%
! AAGGAGTTTGAAACTGATCT+GGG + chr4_2:41049367-41049386 None:intergenic 35.0%
! AAAGGAGTTTGAAACTGATC+TGG + chr4_2:41049368-41049387 None:intergenic 35.0%
TTGTGTCCCTTCAAAACTAT+TGG - chr4_2:41049460-41049479 Msa0600170:CDS 35.0%
!!! GAACTGCCAATAGTTTTGAA+GGG + chr4_2:41049469-41049488 None:intergenic 35.0%
AGAGTAGCTGATAAAATTGC+AGG + chr4_2:41049542-41049561 None:intergenic 35.0%
GTCGCAAAAGGTAATAACAA+TGG - chr4_2:41049638-41049657 Msa0600170:CDS 35.0%
! ACTGGTGCCAAGGAAAATTA+TGG - chr4_2:41047735-41047754 Msa0600170:CDS 40.0%
!! GAAATTTGTTGATGCTGGGT+TGG - chr4_2:41047867-41047886 Msa0600170:CDS 40.0%
TACTAATGCTGAGACTGTGA+TGG - chr4_2:41047996-41048015 Msa0600170:CDS 40.0%
! AGATCACTGATGGATGTCAA+CGG - chr4_2:41048308-41048327 Msa0600170:intron 40.0%
!! CGATAATACGCTTTAGGACA+TGG + chr4_2:41048367-41048386 None:intergenic 40.0%
CTGCAACGATAATACGCTTT+AGG + chr4_2:41048373-41048392 None:intergenic 40.0%
ATGGTCGTTGTATCGAAGAT+TGG + chr4_2:41048911-41048930 None:intergenic 40.0%
CCATATAGTAAGTACGTCGA+TGG + chr4_2:41048930-41048949 None:intergenic 40.0%
CCATCGACGTACTTACTATA+TGG - chr4_2:41048927-41048946 Msa0600170:CDS 40.0%
! TAGCTAGGTAGCTACCATTT+TGG + chr4_2:41048987-41049006 None:intergenic 40.0%
AAAATGGTAGCTACCTAGCT+AGG - chr4_2:41048986-41049005 Msa0600170:CDS 40.0%
AATCTCCAACTACTCCACAA+AGG - chr4_2:41049339-41049358 Msa0600170:intron 40.0%
AGGAATTTGCAGAAGTCTGA+CGG + chr4_2:41049394-41049413 None:intergenic 40.0%
!!! GGAACTGCCAATAGTTTTGA+AGG + chr4_2:41049470-41049489 None:intergenic 40.0%
TGGCAGTTCCAAATATTGCT+CGG - chr4_2:41049480-41049499 Msa0600170:CDS 40.0%
GCTACTCTTACTTCCATGAT+TGG - chr4_2:41049554-41049573 Msa0600170:CDS 40.0%
AATGGGAACAATGTCGCAAA+AGG - chr4_2:41049626-41049645 Msa0600170:CDS 40.0%
ACAGGTAGCAACAACAAAGA+TGG - chr4_2:41049668-41049687 Msa0600170:CDS 40.0%
CAGGTAGCAACAACAAAGAT+GGG - chr4_2:41049669-41049688 Msa0600170:CDS 40.0%
TAGCAACAACAAAGATGGGA+AGG - chr4_2:41049673-41049692 Msa0600170:CDS 40.0%
! ACTGGTGCCAAGGAAAATTA+TGG - chr4_2:41047735-41047754 Msa0600170:CDS 40.0%
!! GAAATTTGTTGATGCTGGGT+TGG - chr4_2:41047867-41047886 Msa0600170:CDS 40.0%
TACTAATGCTGAGACTGTGA+TGG - chr4_2:41047996-41048015 Msa0600170:CDS 40.0%
! AGATCACTGATGGATGTCAA+CGG - chr4_2:41048308-41048327 Msa0600170:intron 40.0%
!! CGATAATACGCTTTAGGACA+TGG + chr4_2:41048367-41048386 None:intergenic 40.0%
CTGCAACGATAATACGCTTT+AGG + chr4_2:41048373-41048392 None:intergenic 40.0%
ATGGTCGTTGTATCGAAGAT+TGG + chr4_2:41048911-41048930 None:intergenic 40.0%
CCATATAGTAAGTACGTCGA+TGG + chr4_2:41048930-41048949 None:intergenic 40.0%
CCATCGACGTACTTACTATA+TGG - chr4_2:41048927-41048946 Msa0600170:CDS 40.0%
! TAGCTAGGTAGCTACCATTT+TGG + chr4_2:41048987-41049006 None:intergenic 40.0%
AAAATGGTAGCTACCTAGCT+AGG - chr4_2:41048986-41049005 Msa0600170:CDS 40.0%
AATCTCCAACTACTCCACAA+AGG - chr4_2:41049339-41049358 Msa0600170:intron 40.0%
AGGAATTTGCAGAAGTCTGA+CGG + chr4_2:41049394-41049413 None:intergenic 40.0%
!!! GGAACTGCCAATAGTTTTGA+AGG + chr4_2:41049470-41049489 None:intergenic 40.0%
TGGCAGTTCCAAATATTGCT+CGG - chr4_2:41049480-41049499 Msa0600170:CDS 40.0%
GCTACTCTTACTTCCATGAT+TGG - chr4_2:41049554-41049573 Msa0600170:CDS 40.0%
AATGGGAACAATGTCGCAAA+AGG - chr4_2:41049626-41049645 Msa0600170:CDS 40.0%
ACAGGTAGCAACAACAAAGA+TGG - chr4_2:41049668-41049687 Msa0600170:CDS 40.0%
CAGGTAGCAACAACAAAGAT+GGG - chr4_2:41049669-41049688 Msa0600170:CDS 40.0%
TAGCAACAACAAAGATGGGA+AGG - chr4_2:41049673-41049692 Msa0600170:CDS 40.0%
!! TGCTGGGTTGGCTACTAATA+AGG - chr4_2:41047879-41047898 Msa0600170:CDS 45.0%
!! ATGATGGAGAGTTGGTGCAA+AGG - chr4_2:41047950-41047969 Msa0600170:CDS 45.0%
! AGTTGGTGCAAAGGCAATGT+AGG - chr4_2:41047959-41047978 Msa0600170:CDS 45.0%
GTTGGTGCAAAGGCAATGTA+GGG - chr4_2:41047960-41047979 Msa0600170:CDS 45.0%
! ATCAGCGTTGAAAAGCTTCG+AGG - chr4_2:41048074-41048093 Msa0600170:CDS 45.0%
GGATGTCAACGGAGAAAGTA+TGG - chr4_2:41048319-41048338 Msa0600170:intron 45.0%
AGCGTATTATCGTTGCAGCA+TGG - chr4_2:41048375-41048394 Msa0600170:intron 45.0%
GTAATGGCTGCGTAAATGCA+TGG + chr4_2:41048842-41048861 None:intergenic 45.0%
AACTGATCTGGGTTCCTTTG+TGG + chr4_2:41049356-41049375 None:intergenic 45.0%
GCAGAAGTCTGACGGTTTAA+AGG + chr4_2:41049386-41049405 None:intergenic 45.0%
TTGAGAGATCAGAGAAGCTG+AGG + chr4_2:41049414-41049433 None:intergenic 45.0%
GGCAGTTCCAAATATTGCTC+GGG - chr4_2:41049481-41049500 Msa0600170:CDS 45.0%
TTGACTGCCCGAGCAATATT+TGG + chr4_2:41049491-41049510 None:intergenic 45.0%
TGGCTGAGTATCACCAATCA+TGG + chr4_2:41049570-41049589 None:intergenic 45.0%
! GTAGCAGCAGTAGTGTTGTT+TGG + chr4_2:41049590-41049609 None:intergenic 45.0%
!! TGCTGGGTTGGCTACTAATA+AGG - chr4_2:41047879-41047898 Msa0600170:CDS 45.0%
!! ATGATGGAGAGTTGGTGCAA+AGG - chr4_2:41047950-41047969 Msa0600170:CDS 45.0%
! AGTTGGTGCAAAGGCAATGT+AGG - chr4_2:41047959-41047978 Msa0600170:CDS 45.0%
GTTGGTGCAAAGGCAATGTA+GGG - chr4_2:41047960-41047979 Msa0600170:CDS 45.0%
! ATCAGCGTTGAAAAGCTTCG+AGG - chr4_2:41048074-41048093 Msa0600170:CDS 45.0%
GGATGTCAACGGAGAAAGTA+TGG - chr4_2:41048319-41048338 Msa0600170:intron 45.0%
AGCGTATTATCGTTGCAGCA+TGG - chr4_2:41048375-41048394 Msa0600170:intron 45.0%
GTAATGGCTGCGTAAATGCA+TGG + chr4_2:41048842-41048861 None:intergenic 45.0%
AACTGATCTGGGTTCCTTTG+TGG + chr4_2:41049356-41049375 None:intergenic 45.0%
GCAGAAGTCTGACGGTTTAA+AGG + chr4_2:41049386-41049405 None:intergenic 45.0%
TTGAGAGATCAGAGAAGCTG+AGG + chr4_2:41049414-41049433 None:intergenic 45.0%
GGCAGTTCCAAATATTGCTC+GGG - chr4_2:41049481-41049500 Msa0600170:CDS 45.0%
TTGACTGCCCGAGCAATATT+TGG + chr4_2:41049491-41049510 None:intergenic 45.0%
TGGCTGAGTATCACCAATCA+TGG + chr4_2:41049570-41049589 None:intergenic 45.0%
! GTAGCAGCAGTAGTGTTGTT+TGG + chr4_2:41049590-41049609 None:intergenic 45.0%
!! TAAAATATATGTATTTATTA+TGG - chr4_2:41048446-41048465 Msa0600170:intron 5.0%
!! TAAAATATATGTATTTATTA+TGG - chr4_2:41048446-41048465 Msa0600170:intron 5.0%
! AGCTGAGAATGGTGGAGTAC+TGG - chr4_2:41047717-41047736 Msa0600170:CDS 50.0%
GGCAATGTAGGGATCTTGTG+TGG - chr4_2:41047971-41047990 Msa0600170:CDS 50.0%
! AGCGTTGAAAAGCTTCGAGG+AGG - chr4_2:41048077-41048096 Msa0600170:CDS 50.0%
! TTTTCGGACTGAGCAACCAC+GGG + chr4_2:41048401-41048420 None:intergenic 50.0%
! GTTTTCGGACTGAGCAACCA+CGG + chr4_2:41048402-41048421 None:intergenic 50.0%
TGGTTGCTCAGTCCGAAAAC+AGG - chr4_2:41048402-41048421 Msa0600170:intron 50.0%
CATGTCTGTGACTGCGATGT+AGG + chr4_2:41048602-41048621 None:intergenic 50.0%
CTTTGGCTGCTGCAGGTAAA+GGG + chr4_2:41049145-41049164 None:intergenic 50.0%
TCTTTGGCTGCTGCAGGTAA+AGG + chr4_2:41049146-41049165 None:intergenic 50.0%
ACCTGCAGCAGCCAAAGAAA+TGG - chr4_2:41049148-41049167 Msa0600170:CDS 50.0%
GGGTTCCTTTGTGGAGTAGT+TGG + chr4_2:41049347-41049366 None:intergenic 50.0%
! AGCTGAGAATGGTGGAGTAC+TGG - chr4_2:41047717-41047736 Msa0600170:CDS 50.0%
GGCAATGTAGGGATCTTGTG+TGG - chr4_2:41047971-41047990 Msa0600170:CDS 50.0%
! AGCGTTGAAAAGCTTCGAGG+AGG - chr4_2:41048077-41048096 Msa0600170:CDS 50.0%
! TTTTCGGACTGAGCAACCAC+GGG + chr4_2:41048401-41048420 None:intergenic 50.0%
! GTTTTCGGACTGAGCAACCA+CGG + chr4_2:41048402-41048421 None:intergenic 50.0%
TGGTTGCTCAGTCCGAAAAC+AGG - chr4_2:41048402-41048421 Msa0600170:intron 50.0%
CATGTCTGTGACTGCGATGT+AGG + chr4_2:41048602-41048621 None:intergenic 50.0%
CTTTGGCTGCTGCAGGTAAA+GGG + chr4_2:41049145-41049164 None:intergenic 50.0%
TCTTTGGCTGCTGCAGGTAA+AGG + chr4_2:41049146-41049165 None:intergenic 50.0%
ACCTGCAGCAGCCAAAGAAA+TGG - chr4_2:41049148-41049167 Msa0600170:CDS 50.0%
GGGTTCCTTTGTGGAGTAGT+TGG + chr4_2:41049347-41049366 None:intergenic 50.0%
!! ATGGTGGAGTACTGGTGCCA+AGG - chr4_2:41047725-41047744 Msa0600170:CDS 55.0%
AAGCTTCGAGGAGGCTTCGA+AGG - chr4_2:41048086-41048105 Msa0600170:CDS 55.0%
GCCATTTCTTTGGCTGCTGC+AGG + chr4_2:41049152-41049171 None:intergenic 55.0%
!! ATGGTGGAGTACTGGTGCCA+AGG - chr4_2:41047725-41047744 Msa0600170:CDS 55.0%
AAGCTTCGAGGAGGCTTCGA+AGG - chr4_2:41048086-41048105 Msa0600170:CDS 55.0%
GCCATTTCTTTGGCTGCTGC+AGG + chr4_2:41049152-41049171 None:intergenic 55.0%
TATCGTTGCAGCATGGCCCG+TGG - chr4_2:41048382-41048401 Msa0600170:intron 60.0%
TGGCTGCTGCAGGTAAAGGG+TGG + chr4_2:41049142-41049161 None:intergenic 60.0%
TATCGTTGCAGCATGGCCCG+TGG - chr4_2:41048382-41048401 Msa0600170:intron 60.0%
TGGCTGCTGCAGGTAAAGGG+TGG + chr4_2:41049142-41049161 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 41047622 41049700 41047622 ID=Msa0600170;Name=Msa0600170
chr4_2 mRNA 41047622 41049700 41047622 ID=Msa0600170-mRNA-1;Parent=Msa0600170;Name=Msa0600170-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|0|0.25|4|0|392
chr4_2 exon 41049403 41049700 41049403 ID=Msa0600170-mRNA-1:exon:8955;Parent=Msa0600170-mRNA-1
chr4_2 exon 41049113 41049249 41049113 ID=Msa0600170-mRNA-1:exon:8954;Parent=Msa0600170-mRNA-1
chr4_2 exon 41048867 41049012 41048867 ID=Msa0600170-mRNA-1:exon:8953;Parent=Msa0600170-mRNA-1
chr4_2 exon 41047622 41048219 41047622 ID=Msa0600170-mRNA-1:exon:8952;Parent=Msa0600170-mRNA-1
chr4_2 CDS 41049403 41049700 41049403 ID=Msa0600170-mRNA-1:cds;Parent=Msa0600170-mRNA-1
chr4_2 CDS 41049113 41049249 41049113 ID=Msa0600170-mRNA-1:cds;Parent=Msa0600170-mRNA-1
chr4_2 CDS 41048867 41049012 41048867 ID=Msa0600170-mRNA-1:cds;Parent=Msa0600170-mRNA-1
chr4_2 CDS 41047622 41048219 41047622 ID=Msa0600170-mRNA-1:cds;Parent=Msa0600170-mRNA-1
Gene Sequence

>Msa0600170

ATGCGAATGGATTTCGAGAAAGTGATGCAAGATTGTAAGGTTAAGGAAGTCAAAGGAAAAGAAGTTTTTGATGGAAAAATTAAAGAGAAAAAAATAGCTGAGAATGGTGGAGTACTGGTGCCAAGGAAAATTATGGATCTTGGATCAGCTACTAATAAGGTTATGGAAGTTAAAGGACAAGAAGTTTATGATGGAAAATTTGGTGAGAAAAAGAGAATGAATAATGGTGGAGAATTAGTGAAAAGGAAATTTGTTGATGCTGGGTTGGCTACTAATAAGGTCAAAGAAGTGTTTAATGGATCAGCGTTGAAAAGCTTCGAGGAGGCTTCGAAGGAGTTAGTCCTAAGTAAGAATGAGGATGTTAATGTTGAAAATGTTGAGGCTACATTGACAAAAGCAAGAGTTACTATTAGAGCTAGATCAGAAGAAACCATTATCACTGATGGATGTCAACGGAGAAAGTATGGACAGAAACTGTCAAAAAGAAACCCATGTCCTAAAGCGTATTATCGTTGCAGCATGGCCCGTGGTTGCTCAGTCCGAAAACAGGTAACTTTCTTCTATAACTATCTAAAATATATAGCAGTTGTCATCACAACATATGAAGGAAATCACAACCACCCTTTACCTGCAGCAGCCAAAGAAATGGCAAAAACAACTTCTGCAGCTGCAAAAATGCTTCTTTCAACATCAACATCAACCAATGATGGACAATTGAATGCAAATTTACTCAGAAGAACACACCTTCCTTGTTCTTCAAGTATTGCAACTATCTCAACTTCTGCCCCATTTCCAACCATTACACTTGATTATACTCAATCTCCAACTACTCCACAAAGGAACCCAGATCAGTTTCAAACTCCTTTAAACCGTCAGACTTCTGCAAATTCCTCAGCTTCTCTGATCTCTCAAACACCTAATCAGAACCAATCAAAATTTTGTGTCCCTTCAAAACTATTGGCAGTTCCAAATATTGCTCGGGCAGTCAACGCTGCCATTGCTGCTAATCCAAATTTTCCTGCAATTTTATCAGCTACTCTTACTTCCATGATTGGTGATACTCAGCCAAACAACACTACTGCTGCTACTGATAATAATAATAATAATGGGAACAATGTCGCAAAAGGTAATAACAATGGAAATATCACAGGTAGCAACAACAAAGATGGGAAGGAATAA
Protein sequence

>Msa0600170

MRMDFEKVMQDCKVKEVKGKEVFDGKIKEKKIAENGGVLVPRKIMDLGSATNKVMEVKGQEVYDGKFGEKKRMNNGGELVKRKFVDAGLATNKVKEVFNGSALKSFEEASKELVLSKNEDVNVENVEATLTKARVTIRARSEETIITDGCQRRKYGQKLSKRNPCPKAYYRCSMARGCSVRKQVTFFYNYLKYIAVVITTYEGNHNHPLPAAAKEMAKTTSAAAKMLLSTSTSTNDGQLNANLLRRTHLPCSSSIATISTSAPFPTITLDYTQSPTTPQRNPDQFQTPLNRQTSANSSASLISQTPNQNQSKFCVPSKLLAVPNIARAVNAAIAANPNFPAILSATLTSMIGDTQPNNTTAATDNNNNNGNNVAKGNNNGNITGSNNKDGKE*