Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600510 | XP_013455733.1 | 75.701 | 214 | 21 | 2 | 22 | 205 | 22 | 234 | 3.78e-106 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600510 | sp|O64703|AGL29_ARATH | 36.154 | 130 | 73 | 5 | 8 | 130 | 3 | 129 | 2.47e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600510 | A0A072UJ33 | 75.701 | 214 | 21 | 2 | 22 | 205 | 22 | 234 | 1.81e-106 | 315 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0600510 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600510 | MtrunA17_Chr4g0025531 | 75.701 | 214 | 21 | 2 | 22 | 205 | 22 | 234 | 3.48e-110 | 315 |
| Msa0600510 | MtrunA17_Chr3g0135891 | 39.370 | 127 | 34 | 3 | 106 | 191 | 16 | 140 | 7.12e-19 | 79.3 |
| Msa0600510 | MtrunA17_Chr8g0379021 | 32.000 | 150 | 94 | 2 | 10 | 151 | 13 | 162 | 8.09e-15 | 69.3 |
| Msa0600510 | MtrunA17_Chr1g0208561 | 30.137 | 146 | 90 | 4 | 10 | 143 | 10 | 155 | 4.28e-14 | 68.6 |
| Msa0600510 | MtrunA17_Chr3g0119901 | 43.421 | 76 | 42 | 1 | 10 | 85 | 10 | 84 | 8.01e-14 | 67.4 |
| Msa0600510 | MtrunA17_Chr3g0089141 | 30.137 | 146 | 90 | 4 | 10 | 143 | 10 | 155 | 1.03e-13 | 67.4 |
| Msa0600510 | MtrunA17_Chr2g0333981 | 29.605 | 152 | 95 | 4 | 10 | 151 | 13 | 162 | 2.69e-13 | 65.5 |
| Msa0600510 | MtrunA17_Chr1g0206721 | 29.677 | 155 | 92 | 4 | 10 | 150 | 10 | 161 | 3.45e-13 | 66.2 |
| Msa0600510 | MtrunA17_Chr3g0085241 | 43.421 | 76 | 42 | 1 | 10 | 85 | 42 | 116 | 4.43e-13 | 65.9 |
| Msa0600510 | MtrunA17_Chr5g0422421 | 28.859 | 149 | 74 | 4 | 10 | 137 | 10 | 147 | 7.12e-13 | 65.1 |
| Msa0600510 | MtrunA17_Chr4g0052081 | 38.235 | 68 | 42 | 0 | 10 | 77 | 3 | 70 | 1.08e-12 | 63.9 |
| Msa0600510 | MtrunA17_Chr1g0188671 | 39.726 | 73 | 44 | 0 | 10 | 82 | 48 | 120 | 1.20e-12 | 65.1 |
| Msa0600510 | MtrunA17_Chr4g0052061 | 35.366 | 82 | 53 | 0 | 10 | 91 | 3 | 84 | 1.60e-12 | 62.8 |
| Msa0600510 | MtrunA17_Chr2g0317481 | 30.159 | 126 | 79 | 3 | 10 | 126 | 10 | 135 | 1.72e-12 | 64.3 |
| Msa0600510 | MtrunA17_Chr2g0317451 | 29.457 | 129 | 82 | 3 | 10 | 129 | 10 | 138 | 1.79e-12 | 64.3 |
| Msa0600510 | MtrunA17_Chr1g0206701 | 31.008 | 129 | 74 | 3 | 10 | 126 | 10 | 135 | 2.15e-12 | 63.9 |
| Msa0600510 | MtrunA17_Chr2g0292791 | 31.746 | 126 | 77 | 3 | 10 | 126 | 10 | 135 | 2.37e-12 | 63.9 |
| Msa0600510 | MtrunA17_Chr5g0422941 | 26.415 | 159 | 97 | 4 | 10 | 156 | 10 | 160 | 2.57e-12 | 63.5 |
| Msa0600510 | MtrunA17_Chr1g0149391 | 30.709 | 127 | 77 | 4 | 10 | 126 | 10 | 135 | 3.33e-12 | 63.5 |
| Msa0600510 | MtrunA17_Chr5g0419601 | 41.176 | 68 | 40 | 0 | 10 | 77 | 10 | 77 | 3.54e-12 | 63.2 |
| Msa0600510 | MtrunA17_Chr1g0208581 | 42.857 | 63 | 36 | 0 | 10 | 72 | 10 | 72 | 3.59e-12 | 63.2 |
| Msa0600510 | MtrunA17_Chr3g0099421 | 31.206 | 141 | 81 | 3 | 10 | 137 | 35 | 172 | 9.00e-12 | 62.4 |
| Msa0600510 | MtrunA17_Chr3g0099411 | 38.356 | 73 | 45 | 0 | 10 | 82 | 10 | 82 | 1.05e-11 | 61.6 |
| Msa0600510 | MtrunA17_Chr1g0187361 | 36.986 | 73 | 46 | 0 | 10 | 82 | 10 | 82 | 1.10e-11 | 62.0 |
| Msa0600510 | MtrunA17_Chr1g0206991 | 30.323 | 155 | 97 | 5 | 10 | 153 | 10 | 164 | 1.33e-11 | 60.8 |
| Msa0600510 | MtrunA17_Chr2g0325971 | 29.530 | 149 | 87 | 5 | 10 | 143 | 10 | 155 | 1.33e-11 | 61.6 |
| Msa0600510 | MtrunA17_Chr8g0355091 | 30.159 | 126 | 79 | 3 | 10 | 126 | 10 | 135 | 1.46e-11 | 61.6 |
| Msa0600510 | MtrunA17_Chr3g0111841 | 43.103 | 58 | 33 | 0 | 15 | 72 | 2 | 59 | 3.69e-11 | 57.0 |
| Msa0600510 | MtrunA17_Chr2g0300421 | 32.584 | 89 | 57 | 1 | 10 | 98 | 10 | 95 | 8.31e-11 | 58.5 |
| Msa0600510 | MtrunA17_Chr8g0356071 | 28.319 | 113 | 68 | 2 | 10 | 116 | 3 | 108 | 8.59e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0600510 | AT2G34440.1 | 36.154 | 130 | 73 | 5 | 8 | 130 | 3 | 129 | 2.52e-15 | 70.9 |
| Msa0600510 | AT2G24840.1 | 41.558 | 77 | 45 | 0 | 10 | 86 | 64 | 140 | 4.14e-14 | 69.3 |
| Msa0600510 | AT4G36590.1 | 46.154 | 65 | 35 | 0 | 8 | 72 | 6 | 70 | 6.57e-14 | 68.6 |
| Msa0600510 | AT1G29962.1 | 43.836 | 73 | 41 | 0 | 8 | 80 | 7 | 79 | 2.12e-13 | 66.2 |
| Msa0600510 | AT5G60440.1 | 30.282 | 142 | 86 | 4 | 8 | 148 | 6 | 135 | 1.29e-11 | 62.8 |
| Msa0600510 | AT1G01530.1 | 32.353 | 102 | 65 | 1 | 10 | 107 | 8 | 109 | 3.83e-11 | 60.8 |
| Msa0600510 | AT1G28460.1 | 42.857 | 70 | 40 | 0 | 8 | 77 | 7 | 76 | 5.09e-11 | 59.7 |
| Msa0600510 | AT1G65360.1 | 42.373 | 59 | 34 | 0 | 10 | 68 | 8 | 66 | 9.40e-11 | 59.7 |
Find 36 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGAGTTAACAACACTTTC+AGG | 0.165743 | 4_2:+41996688 | Msa0600510:CDS |
| CTATTCCGCTTACACTAATA+AGG | 0.252903 | 4_2:-41997647 | None:intergenic |
| TTGAAGAAGTTGGAAAGTTC+TGG | 0.270990 | 4_2:+41996919 | Msa0600510:CDS |
| GATGGGTTTCCATAACAAAA+TGG | 0.311638 | 4_2:-41996751 | None:intergenic |
| CTTATTAGTGTAAGCGGAAT+AGG | 0.312438 | 4_2:+41997648 | Msa0600510:CDS |
| ATAACCAATGTCTTGAAAAC+TGG | 0.328346 | 4_2:+41997021 | Msa0600510:CDS |
| ATCATTTCCTCTTCCATTGA+AGG | 0.330256 | 4_2:-41996814 | None:intergenic |
| CTTCTACCATGTCATATATC+TGG | 0.335672 | 4_2:-41997699 | None:intergenic |
| TTTCTTTCACTTGATCATAT+TGG | 0.353442 | 4_2:-41996963 | None:intergenic |
| AGTTGGAAAGTTCTGGATAT+TGG | 0.382288 | 4_2:+41996926 | Msa0600510:CDS |
| ATTCTCATGCTTTCTCCAAC+GGG | 0.403336 | 4_2:+41996724 | Msa0600510:CDS |
| TTTATTTACGACAGCAACTA+AGG | 0.422183 | 4_2:-41996995 | None:intergenic |
| TTTGTTATAGATTCAGAAGA+TGG | 0.427015 | 4_2:-41996769 | None:intergenic |
| GGAAGAGGAAATGATGAAAC+CGG | 0.442189 | 4_2:+41996822 | Msa0600510:CDS |
| CCGAGTTAACAACACTTTCA+GGG | 0.450892 | 4_2:+41996689 | Msa0600510:CDS |
| CCCTGAAAGTGTTGTTAACT+CGG | 0.457016 | 4_2:-41996689 | None:intergenic |
| GAAGGATGAAAATCCTTCAA+TGG | 0.468568 | 4_2:+41996801 | Msa0600510:CDS |
| AGTGTAAGCGGAATAGGATA+TGG | 0.475102 | 4_2:+41997654 | Msa0600510:CDS |
| TGTTGCATTTACAACGAGAA+AGG | 0.475609 | 4_2:+41996645 | Msa0600510:CDS |
| TATTCTCATGCTTTCTCCAA+CGG | 0.502164 | 4_2:+41996723 | Msa0600510:CDS |
| TGAAAATCCTTCAATGGAAG+AGG | 0.510231 | 4_2:+41996807 | Msa0600510:CDS |
| TTGTTATAGATTCAGAAGAT+GGG | 0.510327 | 4_2:-41996768 | None:intergenic |
| GCATTTACAACGAGAAAGGC+TGG | 0.523590 | 4_2:+41996649 | Msa0600510:CDS |
| TTATCCAAAAGGTAAAGGTA+TGG | 0.531949 | 4_2:+41997575 | Msa0600510:intron |
| GCGCCGAAGAGGTCATCAAA+AGG | 0.555723 | 4_2:+41996575 | Msa0600510:CDS |
| TGGATATTGGTCGATAAAAG+AGG | 0.572226 | 4_2:+41996939 | Msa0600510:CDS |
| GTCAACCTTATTAGTGTAAG+CGG | 0.576253 | 4_2:+41997642 | Msa0600510:CDS |
| CGAGTTAACAACACTTTCAG+GGG | 0.590811 | 4_2:+41996690 | Msa0600510:CDS |
| ACCAATGTCTTGAAAACTGG+AGG | 0.591573 | 4_2:+41997024 | Msa0600510:CDS |
| AGCGGAATAGGATATGGAAG+TGG | 0.601533 | 4_2:+41997660 | Msa0600510:CDS |
| GAGTAAGAATGGCGCCGAAG+AGG | 0.609055 | 4_2:+41996564 | None:intergenic |
| GGAGGAGAGATTGACCCTCA+TGG | 0.634950 | 4_2:+41997042 | Msa0600510:CDS |
| AAGATGTACACATACCATGA+GGG | 0.689701 | 4_2:-41997056 | None:intergenic |
| TGAAAGTGTTGTTAACTCGG+AGG | 0.701093 | 4_2:-41996686 | None:intergenic |
| AAGCATGAGAATATCAACTG+AGG | 0.718686 | 4_2:-41996713 | None:intergenic |
| AAAGGCTGGAATTTACAACA+AGG | 0.729615 | 4_2:+41996663 | Msa0600510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAAAATAATTAGGTAAAA+AGG | - | chr4_2:41997139-41997158 | None:intergenic | 15.0% |
| !! | CAATACATAATATATATGTT+AGG | - | chr4_2:41997528-41997547 | None:intergenic | 15.0% |
| !! | AAAAAAATTGAATCAATGAA+AGG | - | chr4_2:41997556-41997575 | None:intergenic | 15.0% |
| !!! | TTCAATTTTTTTTATCCAAA+AGG | + | chr4_2:41997564-41997583 | Msa0600510:intron | 15.0% |
| !! | CTTAAAATAATTAGGTAAAA+AGG | - | chr4_2:41997139-41997158 | None:intergenic | 15.0% |
| !! | CAATACATAATATATATGTT+AGG | - | chr4_2:41997528-41997547 | None:intergenic | 15.0% |
| !! | AAAAAAATTGAATCAATGAA+AGG | - | chr4_2:41997556-41997575 | None:intergenic | 15.0% |
| !!! | TTCAATTTTTTTTATCCAAA+AGG | + | chr4_2:41997564-41997583 | Msa0600510:intron | 15.0% |
| !! | GTTGAAAAAAATTGAGAAAA+AGG | + | chr4_2:41996612-41996631 | Msa0600510:CDS | 20.0% |
| !!! | TATAACAAAAACTAGTTTGA+AGG | + | chr4_2:41996783-41996802 | Msa0600510:CDS | 20.0% |
| !!! | TGAAAAAAATGATGATCTTT+TGG | + | chr4_2:41996861-41996880 | Msa0600510:CDS | 20.0% |
| !! | CAGATTCACTTAAAATAATT+AGG | - | chr4_2:41997147-41997166 | None:intergenic | 20.0% |
| !!! | CTAATTATTTTAAGTGAATC+TGG | + | chr4_2:41997145-41997164 | Msa0600510:intron | 20.0% |
| !!! | TTTTTTTATCCAAAAGGTAA+AGG | + | chr4_2:41997570-41997589 | Msa0600510:intron | 20.0% |
| !! | GTTGAAAAAAATTGAGAAAA+AGG | + | chr4_2:41996612-41996631 | Msa0600510:CDS | 20.0% |
| !!! | TATAACAAAAACTAGTTTGA+AGG | + | chr4_2:41996783-41996802 | Msa0600510:CDS | 20.0% |
| !!! | TGAAAAAAATGATGATCTTT+TGG | + | chr4_2:41996861-41996880 | Msa0600510:CDS | 20.0% |
| !! | CAGATTCACTTAAAATAATT+AGG | - | chr4_2:41997147-41997166 | None:intergenic | 20.0% |
| !!! | CTAATTATTTTAAGTGAATC+TGG | + | chr4_2:41997145-41997164 | Msa0600510:intron | 20.0% |
| !!! | TTTTTTTATCCAAAAGGTAA+AGG | + | chr4_2:41997570-41997589 | Msa0600510:intron | 20.0% |
| ! | TTGTTATAGATTCAGAAGAT+GGG | - | chr4_2:41996771-41996790 | None:intergenic | 25.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | - | chr4_2:41996772-41996791 | None:intergenic | 25.0% |
| ! | ACGTAAAAATTTGAAGAAGT+TGG | + | chr4_2:41996909-41996928 | Msa0600510:CDS | 25.0% |
| ! | TTTCTTTCACTTGATCATAT+TGG | - | chr4_2:41996966-41996985 | None:intergenic | 25.0% |
| !! | TTTTTCATGAAATATCCTAG+AGG | + | chr4_2:41997312-41997331 | Msa0600510:intron | 25.0% |
| !! | TACCATTTAAGTTACACTTA+TGG | + | chr4_2:41997423-41997442 | Msa0600510:intron | 25.0% |
| !! | ACCATTTAAGTTACACTTAT+GGG | + | chr4_2:41997424-41997443 | Msa0600510:intron | 25.0% |
| ! | TCTTCTTAATTTCCATTACT+AGG | + | chr4_2:41997465-41997484 | Msa0600510:intron | 25.0% |
| ! | ATAGCTACAAAAAAAACACA+AGG | + | chr4_2:41997618-41997637 | Msa0600510:CDS | 25.0% |
| ! | TTGTTATAGATTCAGAAGAT+GGG | - | chr4_2:41996771-41996790 | None:intergenic | 25.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | - | chr4_2:41996772-41996791 | None:intergenic | 25.0% |
| ! | ACGTAAAAATTTGAAGAAGT+TGG | + | chr4_2:41996909-41996928 | Msa0600510:CDS | 25.0% |
| ! | TTTCTTTCACTTGATCATAT+TGG | - | chr4_2:41996966-41996985 | None:intergenic | 25.0% |
| !! | TTTTTCATGAAATATCCTAG+AGG | + | chr4_2:41997312-41997331 | Msa0600510:intron | 25.0% |
| !! | TACCATTTAAGTTACACTTA+TGG | + | chr4_2:41997423-41997442 | Msa0600510:intron | 25.0% |
| !! | ACCATTTAAGTTACACTTAT+GGG | + | chr4_2:41997424-41997443 | Msa0600510:intron | 25.0% |
| ! | TCTTCTTAATTTCCATTACT+AGG | + | chr4_2:41997465-41997484 | Msa0600510:intron | 25.0% |
| ! | ATAGCTACAAAAAAAACACA+AGG | + | chr4_2:41997618-41997637 | Msa0600510:CDS | 25.0% |
| ! | TCATTTTGCTCTATAATCTC+CGG | - | chr4_2:41996844-41996863 | None:intergenic | 30.0% |
| ! | TTTGGATAAAAAGCATGTTG+CGG | + | chr4_2:41996879-41996898 | Msa0600510:CDS | 30.0% |
| TTTATTTACGACAGCAACTA+AGG | - | chr4_2:41996998-41997017 | None:intergenic | 30.0% | |
| ATAACCAATGTCTTGAAAAC+TGG | + | chr4_2:41997021-41997040 | Msa0600510:CDS | 30.0% | |
| AATGACGTCAAATGATTTCA+TGG | + | chr4_2:41997110-41997129 | Msa0600510:intron | 30.0% | |
| ! | AAATCCTTCTTTTGTCTTTG+AGG | + | chr4_2:41997221-41997240 | Msa0600510:intron | 30.0% |
| CTAGAGATATTTGATGTGTT+GGG | - | chr4_2:41997393-41997412 | None:intergenic | 30.0% | |
| TCTAGAGATATTTGATGTGT+TGG | - | chr4_2:41997394-41997413 | None:intergenic | 30.0% | |
| TCCCATAAGTGTAACTTAAA+TGG | - | chr4_2:41997428-41997447 | None:intergenic | 30.0% | |
| TTATCCAAAAGGTAAAGGTA+TGG | + | chr4_2:41997575-41997594 | Msa0600510:intron | 30.0% | |
| ! | TTTTGTAGCTATATCTTGAG+AGG | - | chr4_2:41997610-41997629 | None:intergenic | 30.0% |
| ! | TCATTTTGCTCTATAATCTC+CGG | - | chr4_2:41996844-41996863 | None:intergenic | 30.0% |
| ! | TTTGGATAAAAAGCATGTTG+CGG | + | chr4_2:41996879-41996898 | Msa0600510:CDS | 30.0% |
| TTTATTTACGACAGCAACTA+AGG | - | chr4_2:41996998-41997017 | None:intergenic | 30.0% | |
| ATAACCAATGTCTTGAAAAC+TGG | + | chr4_2:41997021-41997040 | Msa0600510:CDS | 30.0% | |
| AATGACGTCAAATGATTTCA+TGG | + | chr4_2:41997110-41997129 | Msa0600510:intron | 30.0% | |
| ! | AAATCCTTCTTTTGTCTTTG+AGG | + | chr4_2:41997221-41997240 | Msa0600510:intron | 30.0% |
| CTAGAGATATTTGATGTGTT+GGG | - | chr4_2:41997393-41997412 | None:intergenic | 30.0% | |
| TCTAGAGATATTTGATGTGT+TGG | - | chr4_2:41997394-41997413 | None:intergenic | 30.0% | |
| TCCCATAAGTGTAACTTAAA+TGG | - | chr4_2:41997428-41997447 | None:intergenic | 30.0% | |
| TTATCCAAAAGGTAAAGGTA+TGG | + | chr4_2:41997575-41997594 | Msa0600510:intron | 30.0% | |
| ! | TTTTGTAGCTATATCTTGAG+AGG | - | chr4_2:41997610-41997629 | None:intergenic | 30.0% |
| !! | TTTCCTTTTGATGACCTCTT+CGG | - | chr4_2:41996581-41996600 | None:intergenic | 35.0% |
| TGTTGCATTTACAACGAGAA+AGG | + | chr4_2:41996645-41996664 | Msa0600510:CDS | 35.0% | |
| AAAGGCTGGAATTTACAACA+AGG | + | chr4_2:41996663-41996682 | Msa0600510:CDS | 35.0% | |
| AAGCATGAGAATATCAACTG+AGG | - | chr4_2:41996716-41996735 | None:intergenic | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | + | chr4_2:41996723-41996742 | Msa0600510:CDS | 35.0% | |
| ! | TAACAAAATGGTTTTCCCGT+TGG | - | chr4_2:41996742-41996761 | None:intergenic | 35.0% |
| ! | ACGGGAAAACCATTTTGTTA+TGG | + | chr4_2:41996742-41996761 | Msa0600510:CDS | 35.0% |
| ! | GATGGGTTTCCATAACAAAA+TGG | - | chr4_2:41996754-41996773 | None:intergenic | 35.0% |
| GAAGGATGAAAATCCTTCAA+TGG | + | chr4_2:41996801-41996820 | Msa0600510:CDS | 35.0% | |
| TGAAAATCCTTCAATGGAAG+AGG | + | chr4_2:41996807-41996826 | Msa0600510:CDS | 35.0% | |
| ATCATTTCCTCTTCCATTGA+AGG | - | chr4_2:41996817-41996836 | None:intergenic | 35.0% | |
| TTGAAGAAGTTGGAAAGTTC+TGG | + | chr4_2:41996919-41996938 | Msa0600510:CDS | 35.0% | |
| !! | AGTTGGAAAGTTCTGGATAT+TGG | + | chr4_2:41996926-41996945 | Msa0600510:CDS | 35.0% |
| TGGATATTGGTCGATAAAAG+AGG | + | chr4_2:41996939-41996958 | Msa0600510:CDS | 35.0% | |
| AAGATGTACACATACCATGA+GGG | - | chr4_2:41997059-41997078 | None:intergenic | 35.0% | |
| TTGTCCTCAAAGACAAAAGA+AGG | - | chr4_2:41997228-41997247 | None:intergenic | 35.0% | |
| AACACCAAAGATCATGAAGT+TGG | + | chr4_2:41997246-41997265 | Msa0600510:intron | 35.0% | |
| TAGACAAGATCAGATGTTGT+TGG | + | chr4_2:41997357-41997376 | Msa0600510:intron | 35.0% | |
| AATGTTTGCATGCCTAGTAA+TGG | - | chr4_2:41997480-41997499 | None:intergenic | 35.0% | |
| GTCAACCTTATTAGTGTAAG+CGG | + | chr4_2:41997642-41997661 | Msa0600510:CDS | 35.0% | |
| CTATTCCGCTTACACTAATA+AGG | - | chr4_2:41997650-41997669 | None:intergenic | 35.0% | |
| CTTATTAGTGTAAGCGGAAT+AGG | + | chr4_2:41997648-41997667 | Msa0600510:CDS | 35.0% | |
| !! | TTTCCTTTTGATGACCTCTT+CGG | - | chr4_2:41996581-41996600 | None:intergenic | 35.0% |
| TGTTGCATTTACAACGAGAA+AGG | + | chr4_2:41996645-41996664 | Msa0600510:CDS | 35.0% | |
| AAAGGCTGGAATTTACAACA+AGG | + | chr4_2:41996663-41996682 | Msa0600510:CDS | 35.0% | |
| AAGCATGAGAATATCAACTG+AGG | - | chr4_2:41996716-41996735 | None:intergenic | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | + | chr4_2:41996723-41996742 | Msa0600510:CDS | 35.0% | |
| ! | TAACAAAATGGTTTTCCCGT+TGG | - | chr4_2:41996742-41996761 | None:intergenic | 35.0% |
| ! | ACGGGAAAACCATTTTGTTA+TGG | + | chr4_2:41996742-41996761 | Msa0600510:CDS | 35.0% |
| ! | GATGGGTTTCCATAACAAAA+TGG | - | chr4_2:41996754-41996773 | None:intergenic | 35.0% |
| GAAGGATGAAAATCCTTCAA+TGG | + | chr4_2:41996801-41996820 | Msa0600510:CDS | 35.0% | |
| TGAAAATCCTTCAATGGAAG+AGG | + | chr4_2:41996807-41996826 | Msa0600510:CDS | 35.0% | |
| ATCATTTCCTCTTCCATTGA+AGG | - | chr4_2:41996817-41996836 | None:intergenic | 35.0% | |
| TTGAAGAAGTTGGAAAGTTC+TGG | + | chr4_2:41996919-41996938 | Msa0600510:CDS | 35.0% | |
| !! | AGTTGGAAAGTTCTGGATAT+TGG | + | chr4_2:41996926-41996945 | Msa0600510:CDS | 35.0% |
| TGGATATTGGTCGATAAAAG+AGG | + | chr4_2:41996939-41996958 | Msa0600510:CDS | 35.0% | |
| AAGATGTACACATACCATGA+GGG | - | chr4_2:41997059-41997078 | None:intergenic | 35.0% | |
| TTGTCCTCAAAGACAAAAGA+AGG | - | chr4_2:41997228-41997247 | None:intergenic | 35.0% | |
| AACACCAAAGATCATGAAGT+TGG | + | chr4_2:41997246-41997265 | Msa0600510:intron | 35.0% | |
| TAGACAAGATCAGATGTTGT+TGG | + | chr4_2:41997357-41997376 | Msa0600510:intron | 35.0% | |
| AATGTTTGCATGCCTAGTAA+TGG | - | chr4_2:41997480-41997499 | None:intergenic | 35.0% | |
| GTCAACCTTATTAGTGTAAG+CGG | + | chr4_2:41997642-41997661 | Msa0600510:CDS | 35.0% | |
| CTATTCCGCTTACACTAATA+AGG | - | chr4_2:41997650-41997669 | None:intergenic | 35.0% | |
| CTTATTAGTGTAAGCGGAAT+AGG | + | chr4_2:41997648-41997667 | Msa0600510:CDS | 35.0% | |
| !! | TGAAAGTGTTGTTAACTCGG+AGG | - | chr4_2:41996689-41996708 | None:intergenic | 40.0% |
| TCCGAGTTAACAACACTTTC+AGG | + | chr4_2:41996688-41996707 | Msa0600510:CDS | 40.0% | |
| !! | CCCTGAAAGTGTTGTTAACT+CGG | - | chr4_2:41996692-41996711 | None:intergenic | 40.0% |
| CCGAGTTAACAACACTTTCA+GGG | + | chr4_2:41996689-41996708 | Msa0600510:CDS | 40.0% | |
| CGAGTTAACAACACTTTCAG+GGG | + | chr4_2:41996690-41996709 | Msa0600510:CDS | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | + | chr4_2:41996724-41996743 | Msa0600510:CDS | 40.0% | |
| GGAAGAGGAAATGATGAAAC+CGG | + | chr4_2:41996822-41996841 | Msa0600510:CDS | 40.0% | |
| ACCAATGTCTTGAAAACTGG+AGG | + | chr4_2:41997024-41997043 | Msa0600510:CDS | 40.0% | |
| !! | TCCTCCAGTTTTCAAGACAT+TGG | - | chr4_2:41997028-41997047 | None:intergenic | 40.0% |
| CAAGATGTACACATACCATG+AGG | - | chr4_2:41997060-41997079 | None:intergenic | 40.0% | |
| CGTAGCAATTTCTACCATTG+AGG | + | chr4_2:41997179-41997198 | Msa0600510:intron | 40.0% | |
| TCTACCATTGAGGAACTGAA+TGG | + | chr4_2:41997189-41997208 | Msa0600510:intron | 40.0% | |
| TGCACCAACTTCATGATCTT+TGG | - | chr4_2:41997253-41997272 | None:intergenic | 40.0% | |
| ! | GCAACCATACCTTTACCTTT+TGG | - | chr4_2:41997582-41997601 | None:intergenic | 40.0% |
| AGTGTAAGCGGAATAGGATA+TGG | + | chr4_2:41997654-41997673 | Msa0600510:CDS | 40.0% | |
| !! | TGAAAGTGTTGTTAACTCGG+AGG | - | chr4_2:41996689-41996708 | None:intergenic | 40.0% |
| TCCGAGTTAACAACACTTTC+AGG | + | chr4_2:41996688-41996707 | Msa0600510:CDS | 40.0% | |
| !! | CCCTGAAAGTGTTGTTAACT+CGG | - | chr4_2:41996692-41996711 | None:intergenic | 40.0% |
| CCGAGTTAACAACACTTTCA+GGG | + | chr4_2:41996689-41996708 | Msa0600510:CDS | 40.0% | |
| CGAGTTAACAACACTTTCAG+GGG | + | chr4_2:41996690-41996709 | Msa0600510:CDS | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | + | chr4_2:41996724-41996743 | Msa0600510:CDS | 40.0% | |
| GGAAGAGGAAATGATGAAAC+CGG | + | chr4_2:41996822-41996841 | Msa0600510:CDS | 40.0% | |
| ACCAATGTCTTGAAAACTGG+AGG | + | chr4_2:41997024-41997043 | Msa0600510:CDS | 40.0% | |
| !! | TCCTCCAGTTTTCAAGACAT+TGG | - | chr4_2:41997028-41997047 | None:intergenic | 40.0% |
| CAAGATGTACACATACCATG+AGG | - | chr4_2:41997060-41997079 | None:intergenic | 40.0% | |
| CGTAGCAATTTCTACCATTG+AGG | + | chr4_2:41997179-41997198 | Msa0600510:intron | 40.0% | |
| TCTACCATTGAGGAACTGAA+TGG | + | chr4_2:41997189-41997208 | Msa0600510:intron | 40.0% | |
| TGCACCAACTTCATGATCTT+TGG | - | chr4_2:41997253-41997272 | None:intergenic | 40.0% | |
| ! | GCAACCATACCTTTACCTTT+TGG | - | chr4_2:41997582-41997601 | None:intergenic | 40.0% |
| AGTGTAAGCGGAATAGGATA+TGG | + | chr4_2:41997654-41997673 | Msa0600510:CDS | 40.0% | |
| GCATTTACAACGAGAAAGGC+TGG | + | chr4_2:41996649-41996668 | Msa0600510:CDS | 45.0% | |
| GACTCCATTCAGTTCCTCAA+TGG | - | chr4_2:41997196-41997215 | None:intergenic | 45.0% | |
| ! | AATGTGTGAGTGTTGCCTCT+AGG | - | chr4_2:41997330-41997349 | None:intergenic | 45.0% |
| AGCGGAATAGGATATGGAAG+TGG | + | chr4_2:41997660-41997679 | Msa0600510:CDS | 45.0% | |
| GCATTTACAACGAGAAAGGC+TGG | + | chr4_2:41996649-41996668 | Msa0600510:CDS | 45.0% | |
| GACTCCATTCAGTTCCTCAA+TGG | - | chr4_2:41997196-41997215 | None:intergenic | 45.0% | |
| ! | AATGTGTGAGTGTTGCCTCT+AGG | - | chr4_2:41997330-41997349 | None:intergenic | 45.0% |
| AGCGGAATAGGATATGGAAG+TGG | + | chr4_2:41997660-41997679 | Msa0600510:CDS | 45.0% | |
| GCGCCGAAGAGGTCATCAAA+AGG | + | chr4_2:41996575-41996594 | Msa0600510:CDS | 55.0% | |
| GGAGGAGAGATTGACCCTCA+TGG | + | chr4_2:41997042-41997061 | Msa0600510:CDS | 55.0% | |
| GCGCCGAAGAGGTCATCAAA+AGG | + | chr4_2:41996575-41996594 | Msa0600510:CDS | 55.0% | |
| GGAGGAGAGATTGACCCTCA+TGG | + | chr4_2:41997042-41997061 | Msa0600510:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 41996571 | 41997710 | 41996571 | ID=Msa0600510;Name=Msa0600510 |
| chr4_2 | mRNA | 41996571 | 41997710 | 41996571 | ID=Msa0600510-mRNA-1;Parent=Msa0600510;Name=Msa0600510-mRNA-1;_AED=0.13;_eAED=0.16;_QI=0|0|0|1|1|1|2|0|205 |
| chr4_2 | exon | 41996571 | 41997063 | 41996571 | ID=Msa0600510-mRNA-1:exon:9133;Parent=Msa0600510-mRNA-1 |
| chr4_2 | exon | 41997586 | 41997710 | 41997586 | ID=Msa0600510-mRNA-1:exon:9134;Parent=Msa0600510-mRNA-1 |
| chr4_2 | CDS | 41996571 | 41997063 | 41996571 | ID=Msa0600510-mRNA-1:cds;Parent=Msa0600510-mRNA-1 |
| chr4_2 | CDS | 41997586 | 41997710 | 41997586 | ID=Msa0600510-mRNA-1:cds;Parent=Msa0600510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
