AlfalfaGEDB | Msa0600650

M. sativa cultivar zhongmu-4 / Msa0600650

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0600650	XP_029126074.1	58.605	215	80	5	1	207	1	214	1.68e-67	234

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0600650	sp\|Q9SY66\|FRS11_ARATH	34.483	145	87	3	67	204	55	198	8.31e-17	82.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0600650	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0600650	MtrunA17_Chr2g0287651	51.934	181	79	3	34	207	46	225	4.70e-56	191
Msa0600650	MtrunA17_Chr1g0203051	29.268	205	121	4	10	207	42	229	2.20e-29	115
Msa0600650	MtrunA17_Chr1g0171741	30.964	197	103	6	12	187	78	262	7.39e-22	90.9
Msa0600650	MtrunA17_Chr5g0448761	33.803	142	89	2	70	206	70	211	2.00e-16	78.2
Msa0600650	MtrunA17_Chr2g0276841	34.286	140	84	3	72	204	82	220	3.05e-16	77.4
Msa0600650	MtrunA17_Chr1g0203721	33.728	169	103	5	46	209	51	215	8.38e-15	73.6
Msa0600650	MtrunA17_Chr6g0458391	40.141	142	71	6	54	184	214	352	4.01e-14	71.2
Msa0600650	MtrunA17_Chr6g0458391	30.769	130	81	3	65	188	93	219	1.78e-12	66.6
Msa0600650	MtrunA17_Chr2g0329361	31.677	161	93	7	11	160	10	164	5.67e-14	69.3
Msa0600650	MtrunA17_Chr3g0082121	31.818	154	90	4	65	208	45	193	3.87e-13	68.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0600650	AT1G10240.2	34.483	145	87	3	67	204	55	198	8.45e-18	82.4
Msa0600650	AT1G10240.1	34.483	145	87	3	67	204	55	198	8.45e-18	82.4
Msa0600650	AT4G38180.1	29.817	218	126	6	14	206	8	223	1.74e-16	78.6
Msa0600650	AT3G59470.2	30.247	162	103	4	10	164	28	186	5.92e-12	64.3
Msa0600650	AT3G59470.3	30.247	162	103	4	10	164	16	174	6.16e-12	63.9
Msa0600650	AT3G59470.1	30.247	162	103	4	10	164	16	174	6.16e-12	63.9
Msa0600650	AT5G28530.3	26.761	142	96	3	70	205	65	204	4.65e-11	62.8
Msa0600650	AT5G28530.2	26.761	142	96	3	70	205	65	204	4.65e-11	62.8
Msa0600650	AT5G28530.1	26.761	142	96	3	70	205	65	204	4.65e-11	62.8
Msa0600650	AT5G28530.4	27.465	142	95	3	70	205	65	204	6.69e-11	62.0

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Find 46 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCACCGGTTTCGTTGTT+AGG	0.291848	4_2:+42463061	Msa0600650:CDS
AAAGTGTACCGCAGCAAAGT+TGG	0.448110	4_2:+42463090	Msa0600650:CDS
AACACTTGACTAGGGTCAAT+AGG	0.418818	4_2:+42463169	Msa0600650:CDS
AAGTGTACCGCAGCAAAGTT+GGG	0.465894	4_2:+42463091	Msa0600650:CDS
ACATTTATTTCCTGCATATC+GGG	0.352320	4_2:+42463329	Msa0600650:CDS
AGAAAGCTTGAGATGGAGAG+TGG	0.639417	4_2:+42463257	Msa0600650:intron
AGTTATCAACACCGGATCAG+AGG	0.615238	4_2:-42464318	None:intergenic
ATAATCCAGAAAGCTTGAGA+TGG	0.638128	4_2:+42463250	Msa0600650:intron
ATCAAAACATGTCATATAAT+GGG	0.301079	4_2:+42463402	Msa0600650:CDS
ATCTTTCCTAACAACGAAAC+CGG	0.440915	4_2:-42463067	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGTGATTACAATGAGAATT+TGG	+	chr4_2:42462921-42462940	Msa0600650:CDS	30.0%
TTGGATTCTTGTGTAATAGA+TGG	+	chr4_2:42462940-42462959	Msa0600650:CDS	30.0%
ATTCTTGTGTAATAGATGGT+AGG	+	chr4_2:42462944-42462963	Msa0600650:CDS	30.0%
CAGTTTGTGTGCAATAAAAA+TGG	+	chr4_2:42463132-42463151	Msa0600650:CDS	30.0%
AAGCAAAAAACACTTGACTA+GGG	+	chr4_2:42463161-42463180	Msa0600650:CDS	30.0%
ACATTTATTTCCTGCATATC+GGG	+	chr4_2:42463329-42463348	Msa0600650:CDS	30.0%
GAATTCATTTCAAGAAGCAA+TGG	+	chr4_2:42463824-42463843	Msa0600650:intron	30.0%
TTTCAAGAAAGCAATGTACT+CGG	+	chr4_2:42464001-42464020	Msa0600650:intron	30.0%
AAAACTCTTCAAATTCCTCT+GGG	-	chr4_2:42464034-42464053	None:intergenic	30.0%
CATACGAGAACAAGAAATTA+TGG	+	chr4_2:42464108-42464127	Msa0600650:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	42462811	42464400	42462811	ID=Msa0600650;Name=Msa0600650
chr4_2	mRNA	42462811	42464400	42462811	ID=Msa0600650-mRNA-1;Parent=Msa0600650;Name=Msa0600650-mRNA-1;_AED=0.22;_eAED=0.27;_QI=0\|0\|0\|1\|0\|0\|4\|0\|239
chr4_2	exon	42462811	42463018	42462811	ID=Msa0600650-mRNA-1:exon:9228;Parent=Msa0600650-mRNA-1
chr4_2	exon	42463028	42463246	42463028	ID=Msa0600650-mRNA-1:exon:9229;Parent=Msa0600650-mRNA-1
chr4_2	exon	42463259	42463458	42463259	ID=Msa0600650-mRNA-1:exon:9230;Parent=Msa0600650-mRNA-1
chr4_2	exon	42464311	42464400	42464311	ID=Msa0600650-mRNA-1:exon:9231;Parent=Msa0600650-mRNA-1
chr4_2	CDS	42462811	42463018	42462811	ID=Msa0600650-mRNA-1:cds;Parent=Msa0600650-mRNA-1
chr4_2	CDS	42463028	42463246	42463028	ID=Msa0600650-mRNA-1:cds;Parent=Msa0600650-mRNA-1
chr4_2	CDS	42463259	42463458	42463259	ID=Msa0600650-mRNA-1:cds;Parent=Msa0600650-mRNA-1
chr4_2	CDS	42464311	42464400	42464311	ID=Msa0600650-mRNA-1:cds;Parent=Msa0600650-mRNA-1

Gene Sequence

>Msa0600650

ATGGATAGCTCTGATGATTCTGATTTTAATTTTGATGAGGATGGAGATAATGGGTATTCTACTTCTAGTGAAGACGATGAAAGTATAGAGTCTAGAGACCACGATGTCTCTGGTGATTACAATGAGAATTTGGATTCTTGTGTAATAGATGGTAGGTTTGTTAAGATTAATACCATGACGGCGGATGATATTATGAATCTTGATTTTGAAGAAGCTTATGCCTTTTATCAAAAGTATGCAAAAAGCACCGGTTTCGTTGTTAGGAAAGATAAAGTGTACCGCAGCAAAGTTGGGAAACAAATTGTAATGCGACAGTTTGTGTGCAATAAAAATGGATTAAGAAGCAAAAAACACTTGACTAGGGTCAATAGGAAAAGAGAACATAGACCCCTCACCCGGAATAATTGTCCAGCTCGCCTTCGTATACAAAGCTTGAGATGGAGAGTGGTAATTTTTGAAGGGTGTCATAACCATGAACTAACCCCATCAAAATATATACATTTATTTCCTGCATATCGGGGATTGACGGACGCTGATAAAGCTCAAGTTGACAGTATGCAATCGTACGGTATCAAAACATGTCATATAATGGGGTACATGGTGGCAAACAAGGGTGGATATGATGCTAGTAATACCTCTGATCCGGTGTTGATAACTGGTCTGGATAATATTGAGAAAGATGCTGCAAAGATTTATACATCCGAGATATTCAAAAAA

Protein sequence

>Msa0600650

MDSSDDSDFNFDEDGDNGYSTSSEDDESIESRDHDVSGDYNENLDSCVIDGRFVKINTMTADDIMNLDFEEAYAFYQKYAKSTGFVVRKDKVYRSKVGKQIVMRQFVCNKNGLRSKKHLTRVNRKREHRPLTRNNCPARLRIQSLRWRVVIFEGCHNHELTPSKYIHLFPAYRGLTDADKAQVDSMQSYGIKTCHIMGYMVANKGGYDASNTSDPVLITGLDNIEKDAAKIYTSEIFKK