Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0600650 | XP_029126074.1 | 58.605 | 215 | 80 | 5 | 1 | 207 | 1 | 214 | 1.68e-67 | 234 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0600650 | sp|Q9SY66|FRS11_ARATH | 34.483 | 145 | 87 | 3 | 67 | 204 | 55 | 198 | 8.31e-17 | 82.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0600650 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0600650 | MtrunA17_Chr2g0287651 | 51.934 | 181 | 79 | 3 | 34 | 207 | 46 | 225 | 4.70e-56 | 191 |
Msa0600650 | MtrunA17_Chr1g0203051 | 29.268 | 205 | 121 | 4 | 10 | 207 | 42 | 229 | 2.20e-29 | 115 |
Msa0600650 | MtrunA17_Chr1g0171741 | 30.964 | 197 | 103 | 6 | 12 | 187 | 78 | 262 | 7.39e-22 | 90.9 |
Msa0600650 | MtrunA17_Chr5g0448761 | 33.803 | 142 | 89 | 2 | 70 | 206 | 70 | 211 | 2.00e-16 | 78.2 |
Msa0600650 | MtrunA17_Chr2g0276841 | 34.286 | 140 | 84 | 3 | 72 | 204 | 82 | 220 | 3.05e-16 | 77.4 |
Msa0600650 | MtrunA17_Chr1g0203721 | 33.728 | 169 | 103 | 5 | 46 | 209 | 51 | 215 | 8.38e-15 | 73.6 |
Msa0600650 | MtrunA17_Chr6g0458391 | 40.141 | 142 | 71 | 6 | 54 | 184 | 214 | 352 | 4.01e-14 | 71.2 |
Msa0600650 | MtrunA17_Chr6g0458391 | 30.769 | 130 | 81 | 3 | 65 | 188 | 93 | 219 | 1.78e-12 | 66.6 |
Msa0600650 | MtrunA17_Chr2g0329361 | 31.677 | 161 | 93 | 7 | 11 | 160 | 10 | 164 | 5.67e-14 | 69.3 |
Msa0600650 | MtrunA17_Chr3g0082121 | 31.818 | 154 | 90 | 4 | 65 | 208 | 45 | 193 | 3.87e-13 | 68.6 |
Msa0600650 | MtrunA17_Chr8g0389811 | 28.758 | 153 | 85 | 5 | 36 | 168 | 47 | 195 | 5.39e-13 | 65.9 |
Msa0600650 | MtrunA17_Chr8g0363841 | 30.070 | 143 | 93 | 3 | 70 | 208 | 27 | 166 | 8.12e-13 | 67.4 |
Msa0600650 | MtrunA17_Chr1g0202341 | 30.128 | 156 | 103 | 3 | 69 | 221 | 60 | 212 | 1.11e-12 | 67.0 |
Msa0600650 | MtrunA17_Chr2g0329421 | 36.082 | 97 | 56 | 2 | 71 | 164 | 38 | 131 | 1.93e-12 | 64.3 |
Msa0600650 | MtrunA17_Chr1g0198761 | 30.519 | 154 | 93 | 4 | 70 | 211 | 57 | 208 | 2.31e-12 | 66.2 |
Msa0600650 | MtrunA17_Chr5g0431001 | 28.986 | 138 | 85 | 4 | 72 | 197 | 73 | 209 | 5.78e-12 | 64.7 |
Msa0600650 | MtrunA17_Chr4g0033611 | 33.333 | 120 | 73 | 3 | 72 | 187 | 88 | 204 | 3.02e-11 | 61.6 |
Msa0600650 | MtrunA17_Chr2g0290391 | 28.472 | 144 | 91 | 4 | 70 | 205 | 61 | 200 | 5.71e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0600650 | AT1G10240.2 | 34.483 | 145 | 87 | 3 | 67 | 204 | 55 | 198 | 8.45e-18 | 82.4 |
Msa0600650 | AT1G10240.1 | 34.483 | 145 | 87 | 3 | 67 | 204 | 55 | 198 | 8.45e-18 | 82.4 |
Msa0600650 | AT4G38180.1 | 29.817 | 218 | 126 | 6 | 14 | 206 | 8 | 223 | 1.74e-16 | 78.6 |
Msa0600650 | AT3G59470.2 | 30.247 | 162 | 103 | 4 | 10 | 164 | 28 | 186 | 5.92e-12 | 64.3 |
Msa0600650 | AT3G59470.3 | 30.247 | 162 | 103 | 4 | 10 | 164 | 16 | 174 | 6.16e-12 | 63.9 |
Msa0600650 | AT3G59470.1 | 30.247 | 162 | 103 | 4 | 10 | 164 | 16 | 174 | 6.16e-12 | 63.9 |
Msa0600650 | AT5G28530.3 | 26.761 | 142 | 96 | 3 | 70 | 205 | 65 | 204 | 4.65e-11 | 62.8 |
Msa0600650 | AT5G28530.2 | 26.761 | 142 | 96 | 3 | 70 | 205 | 65 | 204 | 4.65e-11 | 62.8 |
Msa0600650 | AT5G28530.1 | 26.761 | 142 | 96 | 3 | 70 | 205 | 65 | 204 | 4.65e-11 | 62.8 |
Msa0600650 | AT5G28530.4 | 27.465 | 142 | 95 | 3 | 70 | 205 | 65 | 204 | 6.69e-11 | 62.0 |
Msa0600650 | AT5G28530.5 | 27.465 | 142 | 95 | 3 | 70 | 205 | 65 | 204 | 7.32e-11 | 62.0 |
Find 46 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTGATTACAATGAGAATT+TGG | 0.226630 | 4_2:+42462921 | Msa0600650:CDS |
GATATTATGAATCTTGATTT+TGG | 0.243439 | 4_2:+42462997 | Msa0600650:CDS |
TATCAAAACATGTCATATAA+TGG | 0.255086 | 4_2:+42463401 | Msa0600650:CDS |
TACATTTATTTCCTGCATAT+CGG | 0.267468 | 4_2:+42463328 | Msa0600650:CDS |
TTTGATGAGGATGGAGATAA+TGG | 0.283559 | 4_2:+42462841 | Msa0600650:CDS |
AAAGCACCGGTTTCGTTGTT+AGG | 0.291848 | 4_2:+42463061 | Msa0600650:CDS |
ATCAAAACATGTCATATAAT+GGG | 0.301079 | 4_2:+42463402 | Msa0600650:CDS |
ACATTTATTTCCTGCATATC+GGG | 0.352320 | 4_2:+42463329 | Msa0600650:CDS |
GGCGAGCTGGACAATTATTC+CGG | 0.353940 | 4_2:-42463215 | None:intergenic |
TTGGATTCTTGTGTAATAGA+TGG | 0.384545 | 4_2:+42462940 | Msa0600650:CDS |
TCTGATCCGGTGTTGATAAC+TGG | 0.398541 | 4_2:+42464320 | Msa0600650:CDS |
AACACTTGACTAGGGTCAAT+AGG | 0.418818 | 4_2:+42463169 | Msa0600650:CDS |
ATCTTTCCTAACAACGAAAC+CGG | 0.440915 | 4_2:-42463067 | None:intergenic |
AAAGTGTACCGCAGCAAAGT+TGG | 0.448110 | 4_2:+42463090 | Msa0600650:CDS |
GGGGTACATGGTGGCAAACA+AGG | 0.461825 | 4_2:+42463422 | Msa0600650:CDS |
AAGTGTACCGCAGCAAAGTT+GGG | 0.465894 | 4_2:+42463091 | Msa0600650:CDS |
TCCGGTGTTGATAACTGGTC+TGG | 0.467260 | 4_2:+42464325 | Msa0600650:CDS |
GCGAGCTGGACAATTATTCC+GGG | 0.478461 | 4_2:-42463214 | None:intergenic |
TCCTGCATATCGGGGATTGA+CGG | 0.482534 | 4_2:+42463338 | Msa0600650:CDS |
TCCGTCAATCCCCGATATGC+AGG | 0.483985 | 4_2:-42463339 | None:intergenic |
TAAGAGTAATACCTCTGATC+CGG | 0.486946 | 4_2:+42464307 | Msa0600650:intron |
TCTAGAGACCACGATGTCTC+TGG | 0.494750 | 4_2:+42462901 | Msa0600650:CDS |
TTGATGAGGATGGAGATAAT+GGG | 0.498718 | 4_2:+42462842 | Msa0600650:CDS |
TAACGTATACGAAGGCGAGC+TGG | 0.516616 | 4_2:-42463228 | None:intergenic |
CTGGACAATTATTCCGGGTG+AGG | 0.532213 | 4_2:-42463209 | None:intergenic |
ATTCTTGTGTAATAGATGGT+AGG | 0.533148 | 4_2:+42462944 | Msa0600650:CDS |
CATAATATCATCCGCCGTCA+TGG | 0.536322 | 4_2:-42462983 | None:intergenic |
ATGTCATATAATGGGGTACA+TGG | 0.556484 | 4_2:+42463410 | Msa0600650:CDS |
TGGACAATTATTCCGGGTGA+GGG | 0.565731 | 4_2:-42463208 | None:intergenic |
GAGAACATAGACCCCTCACC+CGG | 0.567472 | 4_2:+42463196 | Msa0600650:CDS |
CATTTATTTCCTGCATATCG+GGG | 0.582815 | 4_2:+42463330 | Msa0600650:CDS |
GGGTACATGGTGGCAAACAA+GGG | 0.589509 | 4_2:+42463423 | Msa0600650:CDS |
TGTTAAGATTAATACCATGA+CGG | 0.594275 | 4_2:+42462969 | Msa0600650:CDS |
GTTGACAGTATGCAATCGTA+CGG | 0.607441 | 4_2:+42463378 | Msa0600650:CDS |
TACATGGTGGCAAACAAGGG+TGG | 0.611316 | 4_2:+42463426 | Msa0600650:CDS |
AGTTATCAACACCGGATCAG+AGG | 0.615238 | 4_2:-42464318 | None:intergenic |
CTGGATTATAACGTATACGA+AGG | 0.628678 | 4_2:-42463236 | None:intergenic |
TCCAGACCAGTTATCAACAC+CGG | 0.632781 | 4_2:-42464326 | None:intergenic |
ATAATCCAGAAAGCTTGAGA+TGG | 0.638128 | 4_2:+42463250 | Msa0600650:intron |
AGAAAGCTTGAGATGGAGAG+TGG | 0.639417 | 4_2:+42463257 | Msa0600650:intron |
GGACAATTATTCCGGGTGAG+GGG | 0.643647 | 4_2:-42463207 | None:intergenic |
TCAAAACATGTCATATAATG+GGG | 0.649125 | 4_2:+42463403 | Msa0600650:CDS |
TCATATAATGGGGTACATGG+TGG | 0.662255 | 4_2:+42463413 | Msa0600650:CDS |
TTTGTTTCCCAACTTTGCTG+CGG | 0.666357 | 4_2:-42463098 | None:intergenic |
TGTAATCACCAGAGACATCG+TGG | 0.695321 | 4_2:-42462909 | None:intergenic |
TAAGATTAATACCATGACGG+CGG | 0.698475 | 4_2:+42462972 | Msa0600650:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATAAATGTATATATTTTGAT+GGG | - | chr4_2:42463317-42463336 | None:intergenic | 10.0% |
!!! | AATAAATGTATATATTTTGA+TGG | - | chr4_2:42463318-42463337 | None:intergenic | 10.0% |
!!! | ATAAATGTATATATTTTGAT+GGG | - | chr4_2:42463317-42463336 | None:intergenic | 10.0% |
!!! | AATAAATGTATATATTTTGA+TGG | - | chr4_2:42463318-42463337 | None:intergenic | 10.0% |
!!! | TAAATGTATATATTTTGATG+GGG | - | chr4_2:42463316-42463335 | None:intergenic | 15.0% |
!!! | AAAGATTTGTATAACTATTT+TGG | + | chr4_2:42463474-42463493 | Msa0600650:intron | 15.0% |
!!! | TCATATTTTACATATAACAT+AGG | - | chr4_2:42463579-42463598 | None:intergenic | 15.0% |
!! | TTATATGTAAAATATGAGAA+GGG | + | chr4_2:42463582-42463601 | Msa0600650:intron | 15.0% |
!!! | AAAATTGAAAAGATTGTTTT+GGG | + | chr4_2:42463614-42463633 | Msa0600650:intron | 15.0% |
!!! | TAAATGTATATATTTTGATG+GGG | - | chr4_2:42463316-42463335 | None:intergenic | 15.0% |
!!! | AAAGATTTGTATAACTATTT+TGG | + | chr4_2:42463474-42463493 | Msa0600650:intron | 15.0% |
!!! | TCATATTTTACATATAACAT+AGG | - | chr4_2:42463579-42463598 | None:intergenic | 15.0% |
!! | TTATATGTAAAATATGAGAA+GGG | + | chr4_2:42463582-42463601 | Msa0600650:intron | 15.0% |
!!! | AAAATTGAAAAGATTGTTTT+GGG | + | chr4_2:42463614-42463633 | Msa0600650:intron | 15.0% |
!!! | TTCTGATTTTAATTTTGATG+AGG | + | chr4_2:42462828-42462847 | Msa0600650:CDS | 20.0% |
!!! | GATATTATGAATCTTGATTT+TGG | + | chr4_2:42462997-42463016 | Msa0600650:CDS | 20.0% |
!!! | TTTTGCATACTTTTGATAAA+AGG | - | chr4_2:42463043-42463062 | None:intergenic | 20.0% |
!! | TATCAAAACATGTCATATAA+TGG | + | chr4_2:42463401-42463420 | Msa0600650:CDS | 20.0% |
!! | ATCAAAACATGTCATATAAT+GGG | + | chr4_2:42463402-42463421 | Msa0600650:CDS | 20.0% |
!! | GTTATATGTAAAATATGAGA+AGG | + | chr4_2:42463581-42463600 | Msa0600650:intron | 20.0% |
!!! | GAAAATTGAAAAGATTGTTT+TGG | + | chr4_2:42463613-42463632 | Msa0600650:intron | 20.0% |
!!! | GTATTTATTTTTCTTGTATG+TGG | - | chr4_2:42463697-42463716 | None:intergenic | 20.0% |
!! | AAATAAATACAATCTTCCTT+TGG | + | chr4_2:42463707-42463726 | Msa0600650:intron | 20.0% |
!!! | ATTCACAAACGATTATTTTT+GGG | + | chr4_2:42463754-42463773 | Msa0600650:intron | 20.0% |
!!! | TTCTGATTTTAATTTTGATG+AGG | + | chr4_2:42462828-42462847 | Msa0600650:CDS | 20.0% |
!!! | GATATTATGAATCTTGATTT+TGG | + | chr4_2:42462997-42463016 | Msa0600650:CDS | 20.0% |
!!! | TTTTGCATACTTTTGATAAA+AGG | - | chr4_2:42463043-42463062 | None:intergenic | 20.0% |
!! | TATCAAAACATGTCATATAA+TGG | + | chr4_2:42463401-42463420 | Msa0600650:CDS | 20.0% |
!! | ATCAAAACATGTCATATAAT+GGG | + | chr4_2:42463402-42463421 | Msa0600650:CDS | 20.0% |
!! | GTTATATGTAAAATATGAGA+AGG | + | chr4_2:42463581-42463600 | Msa0600650:intron | 20.0% |
!!! | GAAAATTGAAAAGATTGTTT+TGG | + | chr4_2:42463613-42463632 | Msa0600650:intron | 20.0% |
!!! | GTATTTATTTTTCTTGTATG+TGG | - | chr4_2:42463697-42463716 | None:intergenic | 20.0% |
!! | AAATAAATACAATCTTCCTT+TGG | + | chr4_2:42463707-42463726 | Msa0600650:intron | 20.0% |
!!! | ATTCACAAACGATTATTTTT+GGG | + | chr4_2:42463754-42463773 | Msa0600650:intron | 20.0% |
!!! | GATTTTAATTTTGATGAGGA+TGG | + | chr4_2:42462832-42462851 | Msa0600650:CDS | 25.0% |
! | TGTTAAGATTAATACCATGA+CGG | + | chr4_2:42462969-42462988 | Msa0600650:CDS | 25.0% |
! | TACATTTATTTCCTGCATAT+CGG | + | chr4_2:42463328-42463347 | Msa0600650:CDS | 25.0% |
! | TCAAAACATGTCATATAATG+GGG | + | chr4_2:42463403-42463422 | Msa0600650:CDS | 25.0% |
!!! | TAACTATTTTGGCAAGAAAA+TGG | + | chr4_2:42463485-42463504 | Msa0600650:intron | 25.0% |
!!! | AACTATTTTGGCAAGAAAAT+GGG | + | chr4_2:42463486-42463505 | Msa0600650:intron | 25.0% |
!!! | ATGGGTATTGATATTAAAGA+TGG | + | chr4_2:42463504-42463523 | Msa0600650:intron | 25.0% |
!! | CAATCTTTTCAATTTTCCAT+TGG | - | chr4_2:42463610-42463629 | None:intergenic | 25.0% |
!!! | CGAAATGATTTTTTGTGTTA+TGG | + | chr4_2:42463651-42463670 | Msa0600650:intron | 25.0% |
! | CAAAAATAATCGTTTGTGAA+TGG | - | chr4_2:42463755-42463774 | None:intergenic | 25.0% |
!! | CATTCACAAACGATTATTTT+TGG | + | chr4_2:42463753-42463772 | Msa0600650:intron | 25.0% |
!!! | TTCACAAACGATTATTTTTG+GGG | + | chr4_2:42463755-42463774 | Msa0600650:intron | 25.0% |
! | AAACAATAGAGACATATACA+TGG | + | chr4_2:42463796-42463815 | Msa0600650:intron | 25.0% |
! | AACAATAGAGACATATACAT+GGG | + | chr4_2:42463797-42463816 | Msa0600650:intron | 25.0% |
! | AATTCATTTCAAGAAGCAAT+GGG | + | chr4_2:42463825-42463844 | Msa0600650:intron | 25.0% |
! | ATACGAGAACAAGAAATTAT+GGG | + | chr4_2:42464109-42464128 | Msa0600650:intron | 25.0% |
!!! | TACTTTCGAGATAAGTTTTT+TGG | + | chr4_2:42464140-42464159 | Msa0600650:intron | 25.0% |
!!! | GATTTTAATTTTGATGAGGA+TGG | + | chr4_2:42462832-42462851 | Msa0600650:CDS | 25.0% |
! | TGTTAAGATTAATACCATGA+CGG | + | chr4_2:42462969-42462988 | Msa0600650:CDS | 25.0% |
! | TACATTTATTTCCTGCATAT+CGG | + | chr4_2:42463328-42463347 | Msa0600650:CDS | 25.0% |
! | TCAAAACATGTCATATAATG+GGG | + | chr4_2:42463403-42463422 | Msa0600650:CDS | 25.0% |
!!! | TAACTATTTTGGCAAGAAAA+TGG | + | chr4_2:42463485-42463504 | Msa0600650:intron | 25.0% |
!!! | AACTATTTTGGCAAGAAAAT+GGG | + | chr4_2:42463486-42463505 | Msa0600650:intron | 25.0% |
!!! | ATGGGTATTGATATTAAAGA+TGG | + | chr4_2:42463504-42463523 | Msa0600650:intron | 25.0% |
!! | CAATCTTTTCAATTTTCCAT+TGG | - | chr4_2:42463610-42463629 | None:intergenic | 25.0% |
!!! | CGAAATGATTTTTTGTGTTA+TGG | + | chr4_2:42463651-42463670 | Msa0600650:intron | 25.0% |
! | CAAAAATAATCGTTTGTGAA+TGG | - | chr4_2:42463755-42463774 | None:intergenic | 25.0% |
!! | CATTCACAAACGATTATTTT+TGG | + | chr4_2:42463753-42463772 | Msa0600650:intron | 25.0% |
!!! | TTCACAAACGATTATTTTTG+GGG | + | chr4_2:42463755-42463774 | Msa0600650:intron | 25.0% |
! | AAACAATAGAGACATATACA+TGG | + | chr4_2:42463796-42463815 | Msa0600650:intron | 25.0% |
! | AACAATAGAGACATATACAT+GGG | + | chr4_2:42463797-42463816 | Msa0600650:intron | 25.0% |
! | AATTCATTTCAAGAAGCAAT+GGG | + | chr4_2:42463825-42463844 | Msa0600650:intron | 25.0% |
! | ATACGAGAACAAGAAATTAT+GGG | + | chr4_2:42464109-42464128 | Msa0600650:intron | 25.0% |
!!! | TACTTTCGAGATAAGTTTTT+TGG | + | chr4_2:42464140-42464159 | Msa0600650:intron | 25.0% |
TGGTGATTACAATGAGAATT+TGG | + | chr4_2:42462921-42462940 | Msa0600650:CDS | 30.0% | |
TTGGATTCTTGTGTAATAGA+TGG | + | chr4_2:42462940-42462959 | Msa0600650:CDS | 30.0% | |
ATTCTTGTGTAATAGATGGT+AGG | + | chr4_2:42462944-42462963 | Msa0600650:CDS | 30.0% | |
CAGTTTGTGTGCAATAAAAA+TGG | + | chr4_2:42463132-42463151 | Msa0600650:CDS | 30.0% | |
AAGCAAAAAACACTTGACTA+GGG | + | chr4_2:42463161-42463180 | Msa0600650:CDS | 30.0% | |
ACATTTATTTCCTGCATATC+GGG | + | chr4_2:42463329-42463348 | Msa0600650:CDS | 30.0% | |
GAATTCATTTCAAGAAGCAA+TGG | + | chr4_2:42463824-42463843 | Msa0600650:intron | 30.0% | |
TTTCAAGAAAGCAATGTACT+CGG | + | chr4_2:42464001-42464020 | Msa0600650:intron | 30.0% | |
AAAACTCTTCAAATTCCTCT+GGG | - | chr4_2:42464034-42464053 | None:intergenic | 30.0% | |
! | AGAGGAATTTGAAGAGTTTT+GGG | + | chr4_2:42464034-42464053 | Msa0600650:intron | 30.0% |
! | TTTCTTGTTCTCGTATGTTT+TGG | - | chr4_2:42464105-42464124 | None:intergenic | 30.0% |
CATACGAGAACAAGAAATTA+TGG | + | chr4_2:42464108-42464127 | Msa0600650:intron | 30.0% | |
! | AAACTTATCTCGAAAGTATG+CGG | - | chr4_2:42464138-42464157 | None:intergenic | 30.0% |
!!! | ATAAGTTTTTTGGTCGCATA+CGG | + | chr4_2:42464150-42464169 | Msa0600650:intron | 30.0% |
TGGTGATTACAATGAGAATT+TGG | + | chr4_2:42462921-42462940 | Msa0600650:CDS | 30.0% | |
TTGGATTCTTGTGTAATAGA+TGG | + | chr4_2:42462940-42462959 | Msa0600650:CDS | 30.0% | |
ATTCTTGTGTAATAGATGGT+AGG | + | chr4_2:42462944-42462963 | Msa0600650:CDS | 30.0% | |
CAGTTTGTGTGCAATAAAAA+TGG | + | chr4_2:42463132-42463151 | Msa0600650:CDS | 30.0% | |
AAGCAAAAAACACTTGACTA+GGG | + | chr4_2:42463161-42463180 | Msa0600650:CDS | 30.0% | |
ACATTTATTTCCTGCATATC+GGG | + | chr4_2:42463329-42463348 | Msa0600650:CDS | 30.0% | |
GAATTCATTTCAAGAAGCAA+TGG | + | chr4_2:42463824-42463843 | Msa0600650:intron | 30.0% | |
TTTCAAGAAAGCAATGTACT+CGG | + | chr4_2:42464001-42464020 | Msa0600650:intron | 30.0% | |
AAAACTCTTCAAATTCCTCT+GGG | - | chr4_2:42464034-42464053 | None:intergenic | 30.0% | |
! | AGAGGAATTTGAAGAGTTTT+GGG | + | chr4_2:42464034-42464053 | Msa0600650:intron | 30.0% |
! | TTTCTTGTTCTCGTATGTTT+TGG | - | chr4_2:42464105-42464124 | None:intergenic | 30.0% |
CATACGAGAACAAGAAATTA+TGG | + | chr4_2:42464108-42464127 | Msa0600650:intron | 30.0% | |
! | AAACTTATCTCGAAAGTATG+CGG | - | chr4_2:42464138-42464157 | None:intergenic | 30.0% |
!!! | ATAAGTTTTTTGGTCGCATA+CGG | + | chr4_2:42464150-42464169 | Msa0600650:intron | 30.0% |
TTTGATGAGGATGGAGATAA+TGG | + | chr4_2:42462841-42462860 | Msa0600650:CDS | 35.0% | |
TTGATGAGGATGGAGATAAT+GGG | + | chr4_2:42462842-42462861 | Msa0600650:CDS | 35.0% | |
TAAGATTAATACCATGACGG+CGG | + | chr4_2:42462972-42462991 | Msa0600650:CDS | 35.0% | |
! | CAAAAGTATGCAAAAAGCAC+CGG | + | chr4_2:42463048-42463067 | Msa0600650:CDS | 35.0% |
ATCTTTCCTAACAACGAAAC+CGG | - | chr4_2:42463070-42463089 | None:intergenic | 35.0% | |
GAAGCAAAAAACACTTGACT+AGG | + | chr4_2:42463160-42463179 | Msa0600650:CDS | 35.0% | |
CTGGATTATAACGTATACGA+AGG | - | chr4_2:42463239-42463258 | None:intergenic | 35.0% | |
ATAATCCAGAAAGCTTGAGA+TGG | + | chr4_2:42463250-42463269 | Msa0600650:intron | 35.0% | |
! | TGGAGAGTGGTAATTTTTGA+AGG | + | chr4_2:42463270-42463289 | Msa0600650:CDS | 35.0% |
! | GGAGAGTGGTAATTTTTGAA+GGG | + | chr4_2:42463271-42463290 | Msa0600650:CDS | 35.0% |
!!! | ATTTTGATGGGGTTAGTTCA+TGG | - | chr4_2:42463305-42463324 | None:intergenic | 35.0% |
CATTTATTTCCTGCATATCG+GGG | + | chr4_2:42463330-42463349 | Msa0600650:CDS | 35.0% | |
! | ATGTCATATAATGGGGTACA+TGG | + | chr4_2:42463410-42463429 | Msa0600650:CDS | 35.0% |
TTGCTTCTCTAAGCTATCTT+CGG | + | chr4_2:42463535-42463554 | Msa0600650:intron | 35.0% | |
!! | AAATATGAGAAGGGTACCAA+TGG | + | chr4_2:42463591-42463610 | Msa0600650:intron | 35.0% |
!!! | AAAAGATTGTTTTGGGCAGA+TGG | + | chr4_2:42463621-42463640 | Msa0600650:intron | 35.0% |
! | CTTCCTTTGGTAATATTCTC+TGG | + | chr4_2:42463720-42463739 | Msa0600650:intron | 35.0% |
!!! | GATTATTTTTGGGGCTGTTT+TGG | + | chr4_2:42463764-42463783 | Msa0600650:intron | 35.0% |
AAACTCTTCAAATTCCTCTG+GGG | - | chr4_2:42464033-42464052 | None:intergenic | 35.0% | |
CAAAACTCTTCAAATTCCTC+TGG | - | chr4_2:42464035-42464054 | None:intergenic | 35.0% | |
! | CAGAGGAATTTGAAGAGTTT+TGG | + | chr4_2:42464033-42464052 | Msa0600650:intron | 35.0% |
TGAGCTACAAGGTAACAATT+GGG | + | chr4_2:42464076-42464095 | Msa0600650:intron | 35.0% | |
TTCTATACTCTCTCAATGTG+TGG | - | chr4_2:42464265-42464284 | None:intergenic | 35.0% | |
TAAGAGTAATACCTCTGATC+CGG | + | chr4_2:42464307-42464326 | Msa0600650:intron | 35.0% | |
TTTGATGAGGATGGAGATAA+TGG | + | chr4_2:42462841-42462860 | Msa0600650:CDS | 35.0% | |
TTGATGAGGATGGAGATAAT+GGG | + | chr4_2:42462842-42462861 | Msa0600650:CDS | 35.0% | |
TAAGATTAATACCATGACGG+CGG | + | chr4_2:42462972-42462991 | Msa0600650:CDS | 35.0% | |
! | CAAAAGTATGCAAAAAGCAC+CGG | + | chr4_2:42463048-42463067 | Msa0600650:CDS | 35.0% |
ATCTTTCCTAACAACGAAAC+CGG | - | chr4_2:42463070-42463089 | None:intergenic | 35.0% | |
GAAGCAAAAAACACTTGACT+AGG | + | chr4_2:42463160-42463179 | Msa0600650:CDS | 35.0% | |
CTGGATTATAACGTATACGA+AGG | - | chr4_2:42463239-42463258 | None:intergenic | 35.0% | |
ATAATCCAGAAAGCTTGAGA+TGG | + | chr4_2:42463250-42463269 | Msa0600650:intron | 35.0% | |
! | TGGAGAGTGGTAATTTTTGA+AGG | + | chr4_2:42463270-42463289 | Msa0600650:CDS | 35.0% |
! | GGAGAGTGGTAATTTTTGAA+GGG | + | chr4_2:42463271-42463290 | Msa0600650:CDS | 35.0% |
!!! | ATTTTGATGGGGTTAGTTCA+TGG | - | chr4_2:42463305-42463324 | None:intergenic | 35.0% |
CATTTATTTCCTGCATATCG+GGG | + | chr4_2:42463330-42463349 | Msa0600650:CDS | 35.0% | |
! | ATGTCATATAATGGGGTACA+TGG | + | chr4_2:42463410-42463429 | Msa0600650:CDS | 35.0% |
TTGCTTCTCTAAGCTATCTT+CGG | + | chr4_2:42463535-42463554 | Msa0600650:intron | 35.0% | |
!! | AAATATGAGAAGGGTACCAA+TGG | + | chr4_2:42463591-42463610 | Msa0600650:intron | 35.0% |
!!! | AAAAGATTGTTTTGGGCAGA+TGG | + | chr4_2:42463621-42463640 | Msa0600650:intron | 35.0% |
! | CTTCCTTTGGTAATATTCTC+TGG | + | chr4_2:42463720-42463739 | Msa0600650:intron | 35.0% |
!!! | GATTATTTTTGGGGCTGTTT+TGG | + | chr4_2:42463764-42463783 | Msa0600650:intron | 35.0% |
AAACTCTTCAAATTCCTCTG+GGG | - | chr4_2:42464033-42464052 | None:intergenic | 35.0% | |
CAAAACTCTTCAAATTCCTC+TGG | - | chr4_2:42464035-42464054 | None:intergenic | 35.0% | |
! | CAGAGGAATTTGAAGAGTTT+TGG | + | chr4_2:42464033-42464052 | Msa0600650:intron | 35.0% |
TGAGCTACAAGGTAACAATT+GGG | + | chr4_2:42464076-42464095 | Msa0600650:intron | 35.0% | |
TTCTATACTCTCTCAATGTG+TGG | - | chr4_2:42464265-42464284 | None:intergenic | 35.0% | |
TAAGAGTAATACCTCTGATC+CGG | + | chr4_2:42464307-42464326 | Msa0600650:intron | 35.0% | |
TTTGTTTCCCAACTTTGCTG+CGG | - | chr4_2:42463101-42463120 | None:intergenic | 40.0% | |
AACACTTGACTAGGGTCAAT+AGG | + | chr4_2:42463169-42463188 | Msa0600650:CDS | 40.0% | |
GTTGACAGTATGCAATCGTA+CGG | + | chr4_2:42463378-42463397 | Msa0600650:CDS | 40.0% | |
! | TCATATAATGGGGTACATGG+TGG | + | chr4_2:42463413-42463432 | Msa0600650:CDS | 40.0% |
TGCTTCTCTAAGCTATCTTC+GGG | + | chr4_2:42463536-42463555 | Msa0600650:intron | 40.0% | |
CAGCCAGAGAATATTACCAA+AGG | - | chr4_2:42463726-42463745 | None:intergenic | 40.0% | |
ACAACCAAAAGCAGTAGTGA+CGG | + | chr4_2:42463854-42463873 | Msa0600650:intron | 40.0% | |
ACACAGTCTGTGAAATGCTT+CGG | - | chr4_2:42463922-42463941 | None:intergenic | 40.0% | |
AGCATTCTTGTGCAAATTCC+AGG | - | chr4_2:42463946-42463965 | None:intergenic | 40.0% | |
GTGAGCTACAAGGTAACAAT+TGG | + | chr4_2:42464075-42464094 | Msa0600650:intron | 40.0% | |
ATTGATTGCTTCACACTGAG+AGG | - | chr4_2:42464180-42464199 | None:intergenic | 40.0% | |
ATGTGTGGTCAAAGTTATGC+AGG | - | chr4_2:42464250-42464269 | None:intergenic | 40.0% | |
TTTGTTTCCCAACTTTGCTG+CGG | - | chr4_2:42463101-42463120 | None:intergenic | 40.0% | |
AACACTTGACTAGGGTCAAT+AGG | + | chr4_2:42463169-42463188 | Msa0600650:CDS | 40.0% | |
GTTGACAGTATGCAATCGTA+CGG | + | chr4_2:42463378-42463397 | Msa0600650:CDS | 40.0% | |
! | TCATATAATGGGGTACATGG+TGG | + | chr4_2:42463413-42463432 | Msa0600650:CDS | 40.0% |
TGCTTCTCTAAGCTATCTTC+GGG | + | chr4_2:42463536-42463555 | Msa0600650:intron | 40.0% | |
CAGCCAGAGAATATTACCAA+AGG | - | chr4_2:42463726-42463745 | None:intergenic | 40.0% | |
ACAACCAAAAGCAGTAGTGA+CGG | + | chr4_2:42463854-42463873 | Msa0600650:intron | 40.0% | |
ACACAGTCTGTGAAATGCTT+CGG | - | chr4_2:42463922-42463941 | None:intergenic | 40.0% | |
AGCATTCTTGTGCAAATTCC+AGG | - | chr4_2:42463946-42463965 | None:intergenic | 40.0% | |
GTGAGCTACAAGGTAACAAT+TGG | + | chr4_2:42464075-42464094 | Msa0600650:intron | 40.0% | |
ATTGATTGCTTCACACTGAG+AGG | - | chr4_2:42464180-42464199 | None:intergenic | 40.0% | |
ATGTGTGGTCAAAGTTATGC+AGG | - | chr4_2:42464250-42464269 | None:intergenic | 40.0% | |
TGTAATCACCAGAGACATCG+TGG | - | chr4_2:42462912-42462931 | None:intergenic | 45.0% | |
CATAATATCATCCGCCGTCA+TGG | - | chr4_2:42462986-42463005 | None:intergenic | 45.0% | |
!! | AAAGCACCGGTTTCGTTGTT+AGG | + | chr4_2:42463061-42463080 | Msa0600650:CDS | 45.0% |
AAAGTGTACCGCAGCAAAGT+TGG | + | chr4_2:42463090-42463109 | Msa0600650:CDS | 45.0% | |
AAGTGTACCGCAGCAAAGTT+GGG | + | chr4_2:42463091-42463110 | Msa0600650:CDS | 45.0% | |
TGGACAATTATTCCGGGTGA+GGG | - | chr4_2:42463211-42463230 | None:intergenic | 45.0% | |
ACTCTCCATCTCAAGCTTTC+TGG | - | chr4_2:42463258-42463277 | None:intergenic | 45.0% | |
AGAAAGCTTGAGATGGAGAG+TGG | + | chr4_2:42463257-42463276 | Msa0600650:intron | 45.0% | |
AAGGGTGGATATGATGCTGT+TGG | + | chr4_2:42463441-42463460 | Msa0600650:intron | 45.0% | |
GCTTCTCTAAGCTATCTTCG+GGG | + | chr4_2:42463537-42463556 | Msa0600650:intron | 45.0% | |
CTTCTCTAAGCTATCTTCGG+GGG | + | chr4_2:42463538-42463557 | Msa0600650:intron | 45.0% | |
!!! | GATTGTTTTGGGCAGATGGA+TGG | + | chr4_2:42463625-42463644 | Msa0600650:intron | 45.0% |
GGATGGTGACATGTCTATGA+GGG | + | chr4_2:42463875-42463894 | Msa0600650:intron | 45.0% | |
CACAGTCTGTGAAATGCTTC+GGG | - | chr4_2:42463921-42463940 | None:intergenic | 45.0% | |
GTTGAGATCAGTGAGCTACA+AGG | + | chr4_2:42464065-42464084 | Msa0600650:intron | 45.0% | |
AGTTATCAACACCGGATCAG+AGG | - | chr4_2:42464321-42464340 | None:intergenic | 45.0% | |
!! | TCTGATCCGGTGTTGATAAC+TGG | + | chr4_2:42464320-42464339 | Msa0600650:CDS | 45.0% |
TCCAGACCAGTTATCAACAC+CGG | - | chr4_2:42464329-42464348 | None:intergenic | 45.0% | |
TGTAATCACCAGAGACATCG+TGG | - | chr4_2:42462912-42462931 | None:intergenic | 45.0% | |
CATAATATCATCCGCCGTCA+TGG | - | chr4_2:42462986-42463005 | None:intergenic | 45.0% | |
!! | AAAGCACCGGTTTCGTTGTT+AGG | + | chr4_2:42463061-42463080 | Msa0600650:CDS | 45.0% |
AAAGTGTACCGCAGCAAAGT+TGG | + | chr4_2:42463090-42463109 | Msa0600650:CDS | 45.0% | |
AAGTGTACCGCAGCAAAGTT+GGG | + | chr4_2:42463091-42463110 | Msa0600650:CDS | 45.0% | |
TGGACAATTATTCCGGGTGA+GGG | - | chr4_2:42463211-42463230 | None:intergenic | 45.0% | |
ACTCTCCATCTCAAGCTTTC+TGG | - | chr4_2:42463258-42463277 | None:intergenic | 45.0% | |
AGAAAGCTTGAGATGGAGAG+TGG | + | chr4_2:42463257-42463276 | Msa0600650:intron | 45.0% | |
AAGGGTGGATATGATGCTGT+TGG | + | chr4_2:42463441-42463460 | Msa0600650:intron | 45.0% | |
GCTTCTCTAAGCTATCTTCG+GGG | + | chr4_2:42463537-42463556 | Msa0600650:intron | 45.0% | |
CTTCTCTAAGCTATCTTCGG+GGG | + | chr4_2:42463538-42463557 | Msa0600650:intron | 45.0% | |
!!! | GATTGTTTTGGGCAGATGGA+TGG | + | chr4_2:42463625-42463644 | Msa0600650:intron | 45.0% |
GGATGGTGACATGTCTATGA+GGG | + | chr4_2:42463875-42463894 | Msa0600650:intron | 45.0% | |
CACAGTCTGTGAAATGCTTC+GGG | - | chr4_2:42463921-42463940 | None:intergenic | 45.0% | |
GTTGAGATCAGTGAGCTACA+AGG | + | chr4_2:42464065-42464084 | Msa0600650:intron | 45.0% | |
AGTTATCAACACCGGATCAG+AGG | - | chr4_2:42464321-42464340 | None:intergenic | 45.0% | |
!! | TCTGATCCGGTGTTGATAAC+TGG | + | chr4_2:42464320-42464339 | Msa0600650:CDS | 45.0% |
TCCAGACCAGTTATCAACAC+CGG | - | chr4_2:42464329-42464348 | None:intergenic | 45.0% | |
TCTAGAGACCACGATGTCTC+TGG | + | chr4_2:42462901-42462920 | Msa0600650:CDS | 50.0% | |
GGACAATTATTCCGGGTGAG+GGG | - | chr4_2:42463210-42463229 | None:intergenic | 50.0% | |
CTGGACAATTATTCCGGGTG+AGG | - | chr4_2:42463212-42463231 | None:intergenic | 50.0% | |
GCGAGCTGGACAATTATTCC+GGG | - | chr4_2:42463217-42463236 | None:intergenic | 50.0% | |
GGCGAGCTGGACAATTATTC+CGG | - | chr4_2:42463218-42463237 | None:intergenic | 50.0% | |
TAACGTATACGAAGGCGAGC+TGG | - | chr4_2:42463231-42463250 | None:intergenic | 50.0% | |
TCCTGCATATCGGGGATTGA+CGG | + | chr4_2:42463338-42463357 | Msa0600650:CDS | 50.0% | |
GGGTACATGGTGGCAAACAA+GGG | + | chr4_2:42463423-42463442 | Msa0600650:CDS | 50.0% | |
TACATGGTGGCAAACAAGGG+TGG | + | chr4_2:42463426-42463445 | Msa0600650:CDS | 50.0% | |
TCTAAGCTATCTTCGGGGGA+AGG | + | chr4_2:42463542-42463561 | Msa0600650:intron | 50.0% | |
! | CCATCCGTCACTACTGCTTT+TGG | - | chr4_2:42463861-42463880 | None:intergenic | 50.0% |
! | CCAAAAGCAGTAGTGACGGA+TGG | + | chr4_2:42463858-42463877 | Msa0600650:intron | 50.0% |
CGGATGGTGACATGTCTATG+AGG | + | chr4_2:42463874-42463893 | Msa0600650:intron | 50.0% | |
CATTTCACAGACTGTGTGCC+TGG | + | chr4_2:42463925-42463944 | Msa0600650:intron | 50.0% | |
!! | TCCGGTGTTGATAACTGGTC+TGG | + | chr4_2:42464325-42464344 | Msa0600650:CDS | 50.0% |
TCTAGAGACCACGATGTCTC+TGG | + | chr4_2:42462901-42462920 | Msa0600650:CDS | 50.0% | |
GGACAATTATTCCGGGTGAG+GGG | - | chr4_2:42463210-42463229 | None:intergenic | 50.0% | |
CTGGACAATTATTCCGGGTG+AGG | - | chr4_2:42463212-42463231 | None:intergenic | 50.0% | |
GCGAGCTGGACAATTATTCC+GGG | - | chr4_2:42463217-42463236 | None:intergenic | 50.0% | |
GGCGAGCTGGACAATTATTC+CGG | - | chr4_2:42463218-42463237 | None:intergenic | 50.0% | |
TAACGTATACGAAGGCGAGC+TGG | - | chr4_2:42463231-42463250 | None:intergenic | 50.0% | |
TCCTGCATATCGGGGATTGA+CGG | + | chr4_2:42463338-42463357 | Msa0600650:CDS | 50.0% | |
GGGTACATGGTGGCAAACAA+GGG | + | chr4_2:42463423-42463442 | Msa0600650:CDS | 50.0% | |
TACATGGTGGCAAACAAGGG+TGG | + | chr4_2:42463426-42463445 | Msa0600650:CDS | 50.0% | |
TCTAAGCTATCTTCGGGGGA+AGG | + | chr4_2:42463542-42463561 | Msa0600650:intron | 50.0% | |
! | CCATCCGTCACTACTGCTTT+TGG | - | chr4_2:42463861-42463880 | None:intergenic | 50.0% |
! | CCAAAAGCAGTAGTGACGGA+TGG | + | chr4_2:42463858-42463877 | Msa0600650:intron | 50.0% |
CGGATGGTGACATGTCTATG+AGG | + | chr4_2:42463874-42463893 | Msa0600650:intron | 50.0% | |
CATTTCACAGACTGTGTGCC+TGG | + | chr4_2:42463925-42463944 | Msa0600650:intron | 50.0% | |
!! | TCCGGTGTTGATAACTGGTC+TGG | + | chr4_2:42464325-42464344 | Msa0600650:CDS | 50.0% |
GAGAACATAGACCCCTCACC+CGG | + | chr4_2:42463196-42463215 | Msa0600650:CDS | 55.0% | |
TCCGTCAATCCCCGATATGC+AGG | - | chr4_2:42463342-42463361 | None:intergenic | 55.0% | |
GGGGTACATGGTGGCAAACA+AGG | + | chr4_2:42463422-42463441 | Msa0600650:CDS | 55.0% | |
GTACTCGGATTTCACCCCAG+AGG | + | chr4_2:42464016-42464035 | Msa0600650:intron | 55.0% | |
GAGAACATAGACCCCTCACC+CGG | + | chr4_2:42463196-42463215 | Msa0600650:CDS | 55.0% | |
TCCGTCAATCCCCGATATGC+AGG | - | chr4_2:42463342-42463361 | None:intergenic | 55.0% | |
GGGGTACATGGTGGCAAACA+AGG | + | chr4_2:42463422-42463441 | Msa0600650:CDS | 55.0% | |
GTACTCGGATTTCACCCCAG+AGG | + | chr4_2:42464016-42464035 | Msa0600650:intron | 55.0% | |
AGCTATCTTCGGGGGAAGGC+AGG | + | chr4_2:42463546-42463565 | Msa0600650:intron | 60.0% | |
AGCTATCTTCGGGGGAAGGC+AGG | + | chr4_2:42463546-42463565 | Msa0600650:intron | 60.0% | |
TCTTCGGGGGAAGGCAGGCT+TGG | + | chr4_2:42463551-42463570 | Msa0600650:intron | 65.0% | |
TCTTCGGGGGAAGGCAGGCT+TGG | + | chr4_2:42463551-42463570 | Msa0600650:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 42462811 | 42464400 | 42462811 | ID=Msa0600650;Name=Msa0600650 |
chr4_2 | mRNA | 42462811 | 42464400 | 42462811 | ID=Msa0600650-mRNA-1;Parent=Msa0600650;Name=Msa0600650-mRNA-1;_AED=0.22;_eAED=0.27;_QI=0|0|0|1|0|0|4|0|239 |
chr4_2 | exon | 42462811 | 42463018 | 42462811 | ID=Msa0600650-mRNA-1:exon:9228;Parent=Msa0600650-mRNA-1 |
chr4_2 | exon | 42463028 | 42463246 | 42463028 | ID=Msa0600650-mRNA-1:exon:9229;Parent=Msa0600650-mRNA-1 |
chr4_2 | exon | 42463259 | 42463458 | 42463259 | ID=Msa0600650-mRNA-1:exon:9230;Parent=Msa0600650-mRNA-1 |
chr4_2 | exon | 42464311 | 42464400 | 42464311 | ID=Msa0600650-mRNA-1:exon:9231;Parent=Msa0600650-mRNA-1 |
chr4_2 | CDS | 42462811 | 42463018 | 42462811 | ID=Msa0600650-mRNA-1:cds;Parent=Msa0600650-mRNA-1 |
chr4_2 | CDS | 42463028 | 42463246 | 42463028 | ID=Msa0600650-mRNA-1:cds;Parent=Msa0600650-mRNA-1 |
chr4_2 | CDS | 42463259 | 42463458 | 42463259 | ID=Msa0600650-mRNA-1:cds;Parent=Msa0600650-mRNA-1 |
chr4_2 | CDS | 42464311 | 42464400 | 42464311 | ID=Msa0600650-mRNA-1:cds;Parent=Msa0600650-mRNA-1 |
Gene Sequence |
Protein sequence |