AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0600650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0600650 MtrunA17_Chr2g0287651 51.934 181 79 3 34 207 46 225 4.70e-56 191
Msa0600650 MtrunA17_Chr1g0203051 29.268 205 121 4 10 207 42 229 2.20e-29 115
Msa0600650 MtrunA17_Chr1g0171741 30.964 197 103 6 12 187 78 262 7.39e-22 90.9
Msa0600650 MtrunA17_Chr5g0448761 33.803 142 89 2 70 206 70 211 2.00e-16 78.2
Msa0600650 MtrunA17_Chr2g0276841 34.286 140 84 3 72 204 82 220 3.05e-16 77.4
Msa0600650 MtrunA17_Chr1g0203721 33.728 169 103 5 46 209 51 215 8.38e-15 73.6
Msa0600650 MtrunA17_Chr6g0458391 40.141 142 71 6 54 184 214 352 4.01e-14 71.2
Msa0600650 MtrunA17_Chr6g0458391 30.769 130 81 3 65 188 93 219 1.78e-12 66.6
Msa0600650 MtrunA17_Chr2g0329361 31.677 161 93 7 11 160 10 164 5.67e-14 69.3
Msa0600650 MtrunA17_Chr3g0082121 31.818 154 90 4 65 208 45 193 3.87e-13 68.6
Msa0600650 MtrunA17_Chr8g0389811 28.758 153 85 5 36 168 47 195 5.39e-13 65.9
Msa0600650 MtrunA17_Chr8g0363841 30.070 143 93 3 70 208 27 166 8.12e-13 67.4
Msa0600650 MtrunA17_Chr1g0202341 30.128 156 103 3 69 221 60 212 1.11e-12 67.0
Msa0600650 MtrunA17_Chr2g0329421 36.082 97 56 2 71 164 38 131 1.93e-12 64.3
Msa0600650 MtrunA17_Chr1g0198761 30.519 154 93 4 70 211 57 208 2.31e-12 66.2
Msa0600650 MtrunA17_Chr5g0431001 28.986 138 85 4 72 197 73 209 5.78e-12 64.7
Msa0600650 MtrunA17_Chr4g0033611 33.333 120 73 3 72 187 88 204 3.02e-11 61.6
Msa0600650 MtrunA17_Chr2g0290391 28.472 144 91 4 70 205 61 200 5.71e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0600650 AT1G10240.2 34.483 145 87 3 67 204 55 198 8.45e-18 82.4
Msa0600650 AT1G10240.1 34.483 145 87 3 67 204 55 198 8.45e-18 82.4
Msa0600650 AT4G38180.1 29.817 218 126 6 14 206 8 223 1.74e-16 78.6
Msa0600650 AT3G59470.2 30.247 162 103 4 10 164 28 186 5.92e-12 64.3
Msa0600650 AT3G59470.3 30.247 162 103 4 10 164 16 174 6.16e-12 63.9
Msa0600650 AT3G59470.1 30.247 162 103 4 10 164 16 174 6.16e-12 63.9
Msa0600650 AT5G28530.3 26.761 142 96 3 70 205 65 204 4.65e-11 62.8
Msa0600650 AT5G28530.2 26.761 142 96 3 70 205 65 204 4.65e-11 62.8
Msa0600650 AT5G28530.1 26.761 142 96 3 70 205 65 204 4.65e-11 62.8
Msa0600650 AT5G28530.4 27.465 142 95 3 70 205 65 204 6.69e-11 62.0
Msa0600650 AT5G28530.5 27.465 142 95 3 70 205 65 204 7.32e-11 62.0

Find 46 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGATTACAATGAGAATT+TGG 0.226630 4_2:+42462921 Msa0600650:CDS
GATATTATGAATCTTGATTT+TGG 0.243439 4_2:+42462997 Msa0600650:CDS
TATCAAAACATGTCATATAA+TGG 0.255086 4_2:+42463401 Msa0600650:CDS
TACATTTATTTCCTGCATAT+CGG 0.267468 4_2:+42463328 Msa0600650:CDS
TTTGATGAGGATGGAGATAA+TGG 0.283559 4_2:+42462841 Msa0600650:CDS
AAAGCACCGGTTTCGTTGTT+AGG 0.291848 4_2:+42463061 Msa0600650:CDS
ATCAAAACATGTCATATAAT+GGG 0.301079 4_2:+42463402 Msa0600650:CDS
ACATTTATTTCCTGCATATC+GGG 0.352320 4_2:+42463329 Msa0600650:CDS
GGCGAGCTGGACAATTATTC+CGG 0.353940 4_2:-42463215 None:intergenic
TTGGATTCTTGTGTAATAGA+TGG 0.384545 4_2:+42462940 Msa0600650:CDS
TCTGATCCGGTGTTGATAAC+TGG 0.398541 4_2:+42464320 Msa0600650:CDS
AACACTTGACTAGGGTCAAT+AGG 0.418818 4_2:+42463169 Msa0600650:CDS
ATCTTTCCTAACAACGAAAC+CGG 0.440915 4_2:-42463067 None:intergenic
AAAGTGTACCGCAGCAAAGT+TGG 0.448110 4_2:+42463090 Msa0600650:CDS
GGGGTACATGGTGGCAAACA+AGG 0.461825 4_2:+42463422 Msa0600650:CDS
AAGTGTACCGCAGCAAAGTT+GGG 0.465894 4_2:+42463091 Msa0600650:CDS
TCCGGTGTTGATAACTGGTC+TGG 0.467260 4_2:+42464325 Msa0600650:CDS
GCGAGCTGGACAATTATTCC+GGG 0.478461 4_2:-42463214 None:intergenic
TCCTGCATATCGGGGATTGA+CGG 0.482534 4_2:+42463338 Msa0600650:CDS
TCCGTCAATCCCCGATATGC+AGG 0.483985 4_2:-42463339 None:intergenic
TAAGAGTAATACCTCTGATC+CGG 0.486946 4_2:+42464307 Msa0600650:intron
TCTAGAGACCACGATGTCTC+TGG 0.494750 4_2:+42462901 Msa0600650:CDS
TTGATGAGGATGGAGATAAT+GGG 0.498718 4_2:+42462842 Msa0600650:CDS
TAACGTATACGAAGGCGAGC+TGG 0.516616 4_2:-42463228 None:intergenic
CTGGACAATTATTCCGGGTG+AGG 0.532213 4_2:-42463209 None:intergenic
ATTCTTGTGTAATAGATGGT+AGG 0.533148 4_2:+42462944 Msa0600650:CDS
CATAATATCATCCGCCGTCA+TGG 0.536322 4_2:-42462983 None:intergenic
ATGTCATATAATGGGGTACA+TGG 0.556484 4_2:+42463410 Msa0600650:CDS
TGGACAATTATTCCGGGTGA+GGG 0.565731 4_2:-42463208 None:intergenic
GAGAACATAGACCCCTCACC+CGG 0.567472 4_2:+42463196 Msa0600650:CDS
CATTTATTTCCTGCATATCG+GGG 0.582815 4_2:+42463330 Msa0600650:CDS
GGGTACATGGTGGCAAACAA+GGG 0.589509 4_2:+42463423 Msa0600650:CDS
TGTTAAGATTAATACCATGA+CGG 0.594275 4_2:+42462969 Msa0600650:CDS
GTTGACAGTATGCAATCGTA+CGG 0.607441 4_2:+42463378 Msa0600650:CDS
TACATGGTGGCAAACAAGGG+TGG 0.611316 4_2:+42463426 Msa0600650:CDS
AGTTATCAACACCGGATCAG+AGG 0.615238 4_2:-42464318 None:intergenic
CTGGATTATAACGTATACGA+AGG 0.628678 4_2:-42463236 None:intergenic
TCCAGACCAGTTATCAACAC+CGG 0.632781 4_2:-42464326 None:intergenic
ATAATCCAGAAAGCTTGAGA+TGG 0.638128 4_2:+42463250 Msa0600650:intron
AGAAAGCTTGAGATGGAGAG+TGG 0.639417 4_2:+42463257 Msa0600650:intron
GGACAATTATTCCGGGTGAG+GGG 0.643647 4_2:-42463207 None:intergenic
TCAAAACATGTCATATAATG+GGG 0.649125 4_2:+42463403 Msa0600650:CDS
TCATATAATGGGGTACATGG+TGG 0.662255 4_2:+42463413 Msa0600650:CDS
TTTGTTTCCCAACTTTGCTG+CGG 0.666357 4_2:-42463098 None:intergenic
TGTAATCACCAGAGACATCG+TGG 0.695321 4_2:-42462909 None:intergenic
TAAGATTAATACCATGACGG+CGG 0.698475 4_2:+42462972 Msa0600650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATGTATATATTTTGAT+GGG - chr4_2:42463317-42463336 None:intergenic 10.0%
!!! AATAAATGTATATATTTTGA+TGG - chr4_2:42463318-42463337 None:intergenic 10.0%
!!! ATAAATGTATATATTTTGAT+GGG - chr4_2:42463317-42463336 None:intergenic 10.0%
!!! AATAAATGTATATATTTTGA+TGG - chr4_2:42463318-42463337 None:intergenic 10.0%
!!! TAAATGTATATATTTTGATG+GGG - chr4_2:42463316-42463335 None:intergenic 15.0%
!!! AAAGATTTGTATAACTATTT+TGG + chr4_2:42463474-42463493 Msa0600650:intron 15.0%
!!! TCATATTTTACATATAACAT+AGG - chr4_2:42463579-42463598 None:intergenic 15.0%
!! TTATATGTAAAATATGAGAA+GGG + chr4_2:42463582-42463601 Msa0600650:intron 15.0%
!!! AAAATTGAAAAGATTGTTTT+GGG + chr4_2:42463614-42463633 Msa0600650:intron 15.0%
!!! TAAATGTATATATTTTGATG+GGG - chr4_2:42463316-42463335 None:intergenic 15.0%
!!! AAAGATTTGTATAACTATTT+TGG + chr4_2:42463474-42463493 Msa0600650:intron 15.0%
!!! TCATATTTTACATATAACAT+AGG - chr4_2:42463579-42463598 None:intergenic 15.0%
!! TTATATGTAAAATATGAGAA+GGG + chr4_2:42463582-42463601 Msa0600650:intron 15.0%
!!! AAAATTGAAAAGATTGTTTT+GGG + chr4_2:42463614-42463633 Msa0600650:intron 15.0%
!!! TTCTGATTTTAATTTTGATG+AGG + chr4_2:42462828-42462847 Msa0600650:CDS 20.0%
!!! GATATTATGAATCTTGATTT+TGG + chr4_2:42462997-42463016 Msa0600650:CDS 20.0%
!!! TTTTGCATACTTTTGATAAA+AGG - chr4_2:42463043-42463062 None:intergenic 20.0%
!! TATCAAAACATGTCATATAA+TGG + chr4_2:42463401-42463420 Msa0600650:CDS 20.0%
!! ATCAAAACATGTCATATAAT+GGG + chr4_2:42463402-42463421 Msa0600650:CDS 20.0%
!! GTTATATGTAAAATATGAGA+AGG + chr4_2:42463581-42463600 Msa0600650:intron 20.0%
!!! GAAAATTGAAAAGATTGTTT+TGG + chr4_2:42463613-42463632 Msa0600650:intron 20.0%
!!! GTATTTATTTTTCTTGTATG+TGG - chr4_2:42463697-42463716 None:intergenic 20.0%
!! AAATAAATACAATCTTCCTT+TGG + chr4_2:42463707-42463726 Msa0600650:intron 20.0%
!!! ATTCACAAACGATTATTTTT+GGG + chr4_2:42463754-42463773 Msa0600650:intron 20.0%
!!! TTCTGATTTTAATTTTGATG+AGG + chr4_2:42462828-42462847 Msa0600650:CDS 20.0%
!!! GATATTATGAATCTTGATTT+TGG + chr4_2:42462997-42463016 Msa0600650:CDS 20.0%
!!! TTTTGCATACTTTTGATAAA+AGG - chr4_2:42463043-42463062 None:intergenic 20.0%
!! TATCAAAACATGTCATATAA+TGG + chr4_2:42463401-42463420 Msa0600650:CDS 20.0%
!! ATCAAAACATGTCATATAAT+GGG + chr4_2:42463402-42463421 Msa0600650:CDS 20.0%
!! GTTATATGTAAAATATGAGA+AGG + chr4_2:42463581-42463600 Msa0600650:intron 20.0%
!!! GAAAATTGAAAAGATTGTTT+TGG + chr4_2:42463613-42463632 Msa0600650:intron 20.0%
!!! GTATTTATTTTTCTTGTATG+TGG - chr4_2:42463697-42463716 None:intergenic 20.0%
!! AAATAAATACAATCTTCCTT+TGG + chr4_2:42463707-42463726 Msa0600650:intron 20.0%
!!! ATTCACAAACGATTATTTTT+GGG + chr4_2:42463754-42463773 Msa0600650:intron 20.0%
!!! GATTTTAATTTTGATGAGGA+TGG + chr4_2:42462832-42462851 Msa0600650:CDS 25.0%
! TGTTAAGATTAATACCATGA+CGG + chr4_2:42462969-42462988 Msa0600650:CDS 25.0%
! TACATTTATTTCCTGCATAT+CGG + chr4_2:42463328-42463347 Msa0600650:CDS 25.0%
! TCAAAACATGTCATATAATG+GGG + chr4_2:42463403-42463422 Msa0600650:CDS 25.0%
!!! TAACTATTTTGGCAAGAAAA+TGG + chr4_2:42463485-42463504 Msa0600650:intron 25.0%
!!! AACTATTTTGGCAAGAAAAT+GGG + chr4_2:42463486-42463505 Msa0600650:intron 25.0%
!!! ATGGGTATTGATATTAAAGA+TGG + chr4_2:42463504-42463523 Msa0600650:intron 25.0%
!! CAATCTTTTCAATTTTCCAT+TGG - chr4_2:42463610-42463629 None:intergenic 25.0%
!!! CGAAATGATTTTTTGTGTTA+TGG + chr4_2:42463651-42463670 Msa0600650:intron 25.0%
! CAAAAATAATCGTTTGTGAA+TGG - chr4_2:42463755-42463774 None:intergenic 25.0%
!! CATTCACAAACGATTATTTT+TGG + chr4_2:42463753-42463772 Msa0600650:intron 25.0%
!!! TTCACAAACGATTATTTTTG+GGG + chr4_2:42463755-42463774 Msa0600650:intron 25.0%
! AAACAATAGAGACATATACA+TGG + chr4_2:42463796-42463815 Msa0600650:intron 25.0%
! AACAATAGAGACATATACAT+GGG + chr4_2:42463797-42463816 Msa0600650:intron 25.0%
! AATTCATTTCAAGAAGCAAT+GGG + chr4_2:42463825-42463844 Msa0600650:intron 25.0%
! ATACGAGAACAAGAAATTAT+GGG + chr4_2:42464109-42464128 Msa0600650:intron 25.0%
!!! TACTTTCGAGATAAGTTTTT+TGG + chr4_2:42464140-42464159 Msa0600650:intron 25.0%
!!! GATTTTAATTTTGATGAGGA+TGG + chr4_2:42462832-42462851 Msa0600650:CDS 25.0%
! TGTTAAGATTAATACCATGA+CGG + chr4_2:42462969-42462988 Msa0600650:CDS 25.0%
! TACATTTATTTCCTGCATAT+CGG + chr4_2:42463328-42463347 Msa0600650:CDS 25.0%
! TCAAAACATGTCATATAATG+GGG + chr4_2:42463403-42463422 Msa0600650:CDS 25.0%
!!! TAACTATTTTGGCAAGAAAA+TGG + chr4_2:42463485-42463504 Msa0600650:intron 25.0%
!!! AACTATTTTGGCAAGAAAAT+GGG + chr4_2:42463486-42463505 Msa0600650:intron 25.0%
!!! ATGGGTATTGATATTAAAGA+TGG + chr4_2:42463504-42463523 Msa0600650:intron 25.0%
!! CAATCTTTTCAATTTTCCAT+TGG - chr4_2:42463610-42463629 None:intergenic 25.0%
!!! CGAAATGATTTTTTGTGTTA+TGG + chr4_2:42463651-42463670 Msa0600650:intron 25.0%
! CAAAAATAATCGTTTGTGAA+TGG - chr4_2:42463755-42463774 None:intergenic 25.0%
!! CATTCACAAACGATTATTTT+TGG + chr4_2:42463753-42463772 Msa0600650:intron 25.0%
!!! TTCACAAACGATTATTTTTG+GGG + chr4_2:42463755-42463774 Msa0600650:intron 25.0%
! AAACAATAGAGACATATACA+TGG + chr4_2:42463796-42463815 Msa0600650:intron 25.0%
! AACAATAGAGACATATACAT+GGG + chr4_2:42463797-42463816 Msa0600650:intron 25.0%
! AATTCATTTCAAGAAGCAAT+GGG + chr4_2:42463825-42463844 Msa0600650:intron 25.0%
! ATACGAGAACAAGAAATTAT+GGG + chr4_2:42464109-42464128 Msa0600650:intron 25.0%
!!! TACTTTCGAGATAAGTTTTT+TGG + chr4_2:42464140-42464159 Msa0600650:intron 25.0%
TGGTGATTACAATGAGAATT+TGG + chr4_2:42462921-42462940 Msa0600650:CDS 30.0%
TTGGATTCTTGTGTAATAGA+TGG + chr4_2:42462940-42462959 Msa0600650:CDS 30.0%
ATTCTTGTGTAATAGATGGT+AGG + chr4_2:42462944-42462963 Msa0600650:CDS 30.0%
CAGTTTGTGTGCAATAAAAA+TGG + chr4_2:42463132-42463151 Msa0600650:CDS 30.0%
AAGCAAAAAACACTTGACTA+GGG + chr4_2:42463161-42463180 Msa0600650:CDS 30.0%
ACATTTATTTCCTGCATATC+GGG + chr4_2:42463329-42463348 Msa0600650:CDS 30.0%
GAATTCATTTCAAGAAGCAA+TGG + chr4_2:42463824-42463843 Msa0600650:intron 30.0%
TTTCAAGAAAGCAATGTACT+CGG + chr4_2:42464001-42464020 Msa0600650:intron 30.0%
AAAACTCTTCAAATTCCTCT+GGG - chr4_2:42464034-42464053 None:intergenic 30.0%
! AGAGGAATTTGAAGAGTTTT+GGG + chr4_2:42464034-42464053 Msa0600650:intron 30.0%
! TTTCTTGTTCTCGTATGTTT+TGG - chr4_2:42464105-42464124 None:intergenic 30.0%
CATACGAGAACAAGAAATTA+TGG + chr4_2:42464108-42464127 Msa0600650:intron 30.0%
! AAACTTATCTCGAAAGTATG+CGG - chr4_2:42464138-42464157 None:intergenic 30.0%
!!! ATAAGTTTTTTGGTCGCATA+CGG + chr4_2:42464150-42464169 Msa0600650:intron 30.0%
TGGTGATTACAATGAGAATT+TGG + chr4_2:42462921-42462940 Msa0600650:CDS 30.0%
TTGGATTCTTGTGTAATAGA+TGG + chr4_2:42462940-42462959 Msa0600650:CDS 30.0%
ATTCTTGTGTAATAGATGGT+AGG + chr4_2:42462944-42462963 Msa0600650:CDS 30.0%
CAGTTTGTGTGCAATAAAAA+TGG + chr4_2:42463132-42463151 Msa0600650:CDS 30.0%
AAGCAAAAAACACTTGACTA+GGG + chr4_2:42463161-42463180 Msa0600650:CDS 30.0%
ACATTTATTTCCTGCATATC+GGG + chr4_2:42463329-42463348 Msa0600650:CDS 30.0%
GAATTCATTTCAAGAAGCAA+TGG + chr4_2:42463824-42463843 Msa0600650:intron 30.0%
TTTCAAGAAAGCAATGTACT+CGG + chr4_2:42464001-42464020 Msa0600650:intron 30.0%
AAAACTCTTCAAATTCCTCT+GGG - chr4_2:42464034-42464053 None:intergenic 30.0%
! AGAGGAATTTGAAGAGTTTT+GGG + chr4_2:42464034-42464053 Msa0600650:intron 30.0%
! TTTCTTGTTCTCGTATGTTT+TGG - chr4_2:42464105-42464124 None:intergenic 30.0%
CATACGAGAACAAGAAATTA+TGG + chr4_2:42464108-42464127 Msa0600650:intron 30.0%
! AAACTTATCTCGAAAGTATG+CGG - chr4_2:42464138-42464157 None:intergenic 30.0%
!!! ATAAGTTTTTTGGTCGCATA+CGG + chr4_2:42464150-42464169 Msa0600650:intron 30.0%
TTTGATGAGGATGGAGATAA+TGG + chr4_2:42462841-42462860 Msa0600650:CDS 35.0%
TTGATGAGGATGGAGATAAT+GGG + chr4_2:42462842-42462861 Msa0600650:CDS 35.0%
TAAGATTAATACCATGACGG+CGG + chr4_2:42462972-42462991 Msa0600650:CDS 35.0%
! CAAAAGTATGCAAAAAGCAC+CGG + chr4_2:42463048-42463067 Msa0600650:CDS 35.0%
ATCTTTCCTAACAACGAAAC+CGG - chr4_2:42463070-42463089 None:intergenic 35.0%
GAAGCAAAAAACACTTGACT+AGG + chr4_2:42463160-42463179 Msa0600650:CDS 35.0%
CTGGATTATAACGTATACGA+AGG - chr4_2:42463239-42463258 None:intergenic 35.0%
ATAATCCAGAAAGCTTGAGA+TGG + chr4_2:42463250-42463269 Msa0600650:intron 35.0%
! TGGAGAGTGGTAATTTTTGA+AGG + chr4_2:42463270-42463289 Msa0600650:CDS 35.0%
! GGAGAGTGGTAATTTTTGAA+GGG + chr4_2:42463271-42463290 Msa0600650:CDS 35.0%
!!! ATTTTGATGGGGTTAGTTCA+TGG - chr4_2:42463305-42463324 None:intergenic 35.0%
CATTTATTTCCTGCATATCG+GGG + chr4_2:42463330-42463349 Msa0600650:CDS 35.0%
! ATGTCATATAATGGGGTACA+TGG + chr4_2:42463410-42463429 Msa0600650:CDS 35.0%
TTGCTTCTCTAAGCTATCTT+CGG + chr4_2:42463535-42463554 Msa0600650:intron 35.0%
!! AAATATGAGAAGGGTACCAA+TGG + chr4_2:42463591-42463610 Msa0600650:intron 35.0%
!!! AAAAGATTGTTTTGGGCAGA+TGG + chr4_2:42463621-42463640 Msa0600650:intron 35.0%
! CTTCCTTTGGTAATATTCTC+TGG + chr4_2:42463720-42463739 Msa0600650:intron 35.0%
!!! GATTATTTTTGGGGCTGTTT+TGG + chr4_2:42463764-42463783 Msa0600650:intron 35.0%
AAACTCTTCAAATTCCTCTG+GGG - chr4_2:42464033-42464052 None:intergenic 35.0%
CAAAACTCTTCAAATTCCTC+TGG - chr4_2:42464035-42464054 None:intergenic 35.0%
! CAGAGGAATTTGAAGAGTTT+TGG + chr4_2:42464033-42464052 Msa0600650:intron 35.0%
TGAGCTACAAGGTAACAATT+GGG + chr4_2:42464076-42464095 Msa0600650:intron 35.0%
TTCTATACTCTCTCAATGTG+TGG - chr4_2:42464265-42464284 None:intergenic 35.0%
TAAGAGTAATACCTCTGATC+CGG + chr4_2:42464307-42464326 Msa0600650:intron 35.0%
TTTGATGAGGATGGAGATAA+TGG + chr4_2:42462841-42462860 Msa0600650:CDS 35.0%
TTGATGAGGATGGAGATAAT+GGG + chr4_2:42462842-42462861 Msa0600650:CDS 35.0%
TAAGATTAATACCATGACGG+CGG + chr4_2:42462972-42462991 Msa0600650:CDS 35.0%
! CAAAAGTATGCAAAAAGCAC+CGG + chr4_2:42463048-42463067 Msa0600650:CDS 35.0%
ATCTTTCCTAACAACGAAAC+CGG - chr4_2:42463070-42463089 None:intergenic 35.0%
GAAGCAAAAAACACTTGACT+AGG + chr4_2:42463160-42463179 Msa0600650:CDS 35.0%
CTGGATTATAACGTATACGA+AGG - chr4_2:42463239-42463258 None:intergenic 35.0%
ATAATCCAGAAAGCTTGAGA+TGG + chr4_2:42463250-42463269 Msa0600650:intron 35.0%
! TGGAGAGTGGTAATTTTTGA+AGG + chr4_2:42463270-42463289 Msa0600650:CDS 35.0%
! GGAGAGTGGTAATTTTTGAA+GGG + chr4_2:42463271-42463290 Msa0600650:CDS 35.0%
!!! ATTTTGATGGGGTTAGTTCA+TGG - chr4_2:42463305-42463324 None:intergenic 35.0%
CATTTATTTCCTGCATATCG+GGG + chr4_2:42463330-42463349 Msa0600650:CDS 35.0%
! ATGTCATATAATGGGGTACA+TGG + chr4_2:42463410-42463429 Msa0600650:CDS 35.0%
TTGCTTCTCTAAGCTATCTT+CGG + chr4_2:42463535-42463554 Msa0600650:intron 35.0%
!! AAATATGAGAAGGGTACCAA+TGG + chr4_2:42463591-42463610 Msa0600650:intron 35.0%
!!! AAAAGATTGTTTTGGGCAGA+TGG + chr4_2:42463621-42463640 Msa0600650:intron 35.0%
! CTTCCTTTGGTAATATTCTC+TGG + chr4_2:42463720-42463739 Msa0600650:intron 35.0%
!!! GATTATTTTTGGGGCTGTTT+TGG + chr4_2:42463764-42463783 Msa0600650:intron 35.0%
AAACTCTTCAAATTCCTCTG+GGG - chr4_2:42464033-42464052 None:intergenic 35.0%
CAAAACTCTTCAAATTCCTC+TGG - chr4_2:42464035-42464054 None:intergenic 35.0%
! CAGAGGAATTTGAAGAGTTT+TGG + chr4_2:42464033-42464052 Msa0600650:intron 35.0%
TGAGCTACAAGGTAACAATT+GGG + chr4_2:42464076-42464095 Msa0600650:intron 35.0%
TTCTATACTCTCTCAATGTG+TGG - chr4_2:42464265-42464284 None:intergenic 35.0%
TAAGAGTAATACCTCTGATC+CGG + chr4_2:42464307-42464326 Msa0600650:intron 35.0%
TTTGTTTCCCAACTTTGCTG+CGG - chr4_2:42463101-42463120 None:intergenic 40.0%
AACACTTGACTAGGGTCAAT+AGG + chr4_2:42463169-42463188 Msa0600650:CDS 40.0%
GTTGACAGTATGCAATCGTA+CGG + chr4_2:42463378-42463397 Msa0600650:CDS 40.0%
! TCATATAATGGGGTACATGG+TGG + chr4_2:42463413-42463432 Msa0600650:CDS 40.0%
TGCTTCTCTAAGCTATCTTC+GGG + chr4_2:42463536-42463555 Msa0600650:intron 40.0%
CAGCCAGAGAATATTACCAA+AGG - chr4_2:42463726-42463745 None:intergenic 40.0%
ACAACCAAAAGCAGTAGTGA+CGG + chr4_2:42463854-42463873 Msa0600650:intron 40.0%
ACACAGTCTGTGAAATGCTT+CGG - chr4_2:42463922-42463941 None:intergenic 40.0%
AGCATTCTTGTGCAAATTCC+AGG - chr4_2:42463946-42463965 None:intergenic 40.0%
GTGAGCTACAAGGTAACAAT+TGG + chr4_2:42464075-42464094 Msa0600650:intron 40.0%
ATTGATTGCTTCACACTGAG+AGG - chr4_2:42464180-42464199 None:intergenic 40.0%
ATGTGTGGTCAAAGTTATGC+AGG - chr4_2:42464250-42464269 None:intergenic 40.0%
TTTGTTTCCCAACTTTGCTG+CGG - chr4_2:42463101-42463120 None:intergenic 40.0%
AACACTTGACTAGGGTCAAT+AGG + chr4_2:42463169-42463188 Msa0600650:CDS 40.0%
GTTGACAGTATGCAATCGTA+CGG + chr4_2:42463378-42463397 Msa0600650:CDS 40.0%
! TCATATAATGGGGTACATGG+TGG + chr4_2:42463413-42463432 Msa0600650:CDS 40.0%
TGCTTCTCTAAGCTATCTTC+GGG + chr4_2:42463536-42463555 Msa0600650:intron 40.0%
CAGCCAGAGAATATTACCAA+AGG - chr4_2:42463726-42463745 None:intergenic 40.0%
ACAACCAAAAGCAGTAGTGA+CGG + chr4_2:42463854-42463873 Msa0600650:intron 40.0%
ACACAGTCTGTGAAATGCTT+CGG - chr4_2:42463922-42463941 None:intergenic 40.0%
AGCATTCTTGTGCAAATTCC+AGG - chr4_2:42463946-42463965 None:intergenic 40.0%
GTGAGCTACAAGGTAACAAT+TGG + chr4_2:42464075-42464094 Msa0600650:intron 40.0%
ATTGATTGCTTCACACTGAG+AGG - chr4_2:42464180-42464199 None:intergenic 40.0%
ATGTGTGGTCAAAGTTATGC+AGG - chr4_2:42464250-42464269 None:intergenic 40.0%
TGTAATCACCAGAGACATCG+TGG - chr4_2:42462912-42462931 None:intergenic 45.0%
CATAATATCATCCGCCGTCA+TGG - chr4_2:42462986-42463005 None:intergenic 45.0%
!! AAAGCACCGGTTTCGTTGTT+AGG + chr4_2:42463061-42463080 Msa0600650:CDS 45.0%
AAAGTGTACCGCAGCAAAGT+TGG + chr4_2:42463090-42463109 Msa0600650:CDS 45.0%
AAGTGTACCGCAGCAAAGTT+GGG + chr4_2:42463091-42463110 Msa0600650:CDS 45.0%
TGGACAATTATTCCGGGTGA+GGG - chr4_2:42463211-42463230 None:intergenic 45.0%
ACTCTCCATCTCAAGCTTTC+TGG - chr4_2:42463258-42463277 None:intergenic 45.0%
AGAAAGCTTGAGATGGAGAG+TGG + chr4_2:42463257-42463276 Msa0600650:intron 45.0%
AAGGGTGGATATGATGCTGT+TGG + chr4_2:42463441-42463460 Msa0600650:intron 45.0%
GCTTCTCTAAGCTATCTTCG+GGG + chr4_2:42463537-42463556 Msa0600650:intron 45.0%
CTTCTCTAAGCTATCTTCGG+GGG + chr4_2:42463538-42463557 Msa0600650:intron 45.0%
!!! GATTGTTTTGGGCAGATGGA+TGG + chr4_2:42463625-42463644 Msa0600650:intron 45.0%
GGATGGTGACATGTCTATGA+GGG + chr4_2:42463875-42463894 Msa0600650:intron 45.0%
CACAGTCTGTGAAATGCTTC+GGG - chr4_2:42463921-42463940 None:intergenic 45.0%
GTTGAGATCAGTGAGCTACA+AGG + chr4_2:42464065-42464084 Msa0600650:intron 45.0%
AGTTATCAACACCGGATCAG+AGG - chr4_2:42464321-42464340 None:intergenic 45.0%
!! TCTGATCCGGTGTTGATAAC+TGG + chr4_2:42464320-42464339 Msa0600650:CDS 45.0%
TCCAGACCAGTTATCAACAC+CGG - chr4_2:42464329-42464348 None:intergenic 45.0%
TGTAATCACCAGAGACATCG+TGG - chr4_2:42462912-42462931 None:intergenic 45.0%
CATAATATCATCCGCCGTCA+TGG - chr4_2:42462986-42463005 None:intergenic 45.0%
!! AAAGCACCGGTTTCGTTGTT+AGG + chr4_2:42463061-42463080 Msa0600650:CDS 45.0%
AAAGTGTACCGCAGCAAAGT+TGG + chr4_2:42463090-42463109 Msa0600650:CDS 45.0%
AAGTGTACCGCAGCAAAGTT+GGG + chr4_2:42463091-42463110 Msa0600650:CDS 45.0%
TGGACAATTATTCCGGGTGA+GGG - chr4_2:42463211-42463230 None:intergenic 45.0%
ACTCTCCATCTCAAGCTTTC+TGG - chr4_2:42463258-42463277 None:intergenic 45.0%
AGAAAGCTTGAGATGGAGAG+TGG + chr4_2:42463257-42463276 Msa0600650:intron 45.0%
AAGGGTGGATATGATGCTGT+TGG + chr4_2:42463441-42463460 Msa0600650:intron 45.0%
GCTTCTCTAAGCTATCTTCG+GGG + chr4_2:42463537-42463556 Msa0600650:intron 45.0%
CTTCTCTAAGCTATCTTCGG+GGG + chr4_2:42463538-42463557 Msa0600650:intron 45.0%
!!! GATTGTTTTGGGCAGATGGA+TGG + chr4_2:42463625-42463644 Msa0600650:intron 45.0%
GGATGGTGACATGTCTATGA+GGG + chr4_2:42463875-42463894 Msa0600650:intron 45.0%
CACAGTCTGTGAAATGCTTC+GGG - chr4_2:42463921-42463940 None:intergenic 45.0%
GTTGAGATCAGTGAGCTACA+AGG + chr4_2:42464065-42464084 Msa0600650:intron 45.0%
AGTTATCAACACCGGATCAG+AGG - chr4_2:42464321-42464340 None:intergenic 45.0%
!! TCTGATCCGGTGTTGATAAC+TGG + chr4_2:42464320-42464339 Msa0600650:CDS 45.0%
TCCAGACCAGTTATCAACAC+CGG - chr4_2:42464329-42464348 None:intergenic 45.0%
TCTAGAGACCACGATGTCTC+TGG + chr4_2:42462901-42462920 Msa0600650:CDS 50.0%
GGACAATTATTCCGGGTGAG+GGG - chr4_2:42463210-42463229 None:intergenic 50.0%
CTGGACAATTATTCCGGGTG+AGG - chr4_2:42463212-42463231 None:intergenic 50.0%
GCGAGCTGGACAATTATTCC+GGG - chr4_2:42463217-42463236 None:intergenic 50.0%
GGCGAGCTGGACAATTATTC+CGG - chr4_2:42463218-42463237 None:intergenic 50.0%
TAACGTATACGAAGGCGAGC+TGG - chr4_2:42463231-42463250 None:intergenic 50.0%
TCCTGCATATCGGGGATTGA+CGG + chr4_2:42463338-42463357 Msa0600650:CDS 50.0%
GGGTACATGGTGGCAAACAA+GGG + chr4_2:42463423-42463442 Msa0600650:CDS 50.0%
TACATGGTGGCAAACAAGGG+TGG + chr4_2:42463426-42463445 Msa0600650:CDS 50.0%
TCTAAGCTATCTTCGGGGGA+AGG + chr4_2:42463542-42463561 Msa0600650:intron 50.0%
! CCATCCGTCACTACTGCTTT+TGG - chr4_2:42463861-42463880 None:intergenic 50.0%
! CCAAAAGCAGTAGTGACGGA+TGG + chr4_2:42463858-42463877 Msa0600650:intron 50.0%
CGGATGGTGACATGTCTATG+AGG + chr4_2:42463874-42463893 Msa0600650:intron 50.0%
CATTTCACAGACTGTGTGCC+TGG + chr4_2:42463925-42463944 Msa0600650:intron 50.0%
!! TCCGGTGTTGATAACTGGTC+TGG + chr4_2:42464325-42464344 Msa0600650:CDS 50.0%
TCTAGAGACCACGATGTCTC+TGG + chr4_2:42462901-42462920 Msa0600650:CDS 50.0%
GGACAATTATTCCGGGTGAG+GGG - chr4_2:42463210-42463229 None:intergenic 50.0%
CTGGACAATTATTCCGGGTG+AGG - chr4_2:42463212-42463231 None:intergenic 50.0%
GCGAGCTGGACAATTATTCC+GGG - chr4_2:42463217-42463236 None:intergenic 50.0%
GGCGAGCTGGACAATTATTC+CGG - chr4_2:42463218-42463237 None:intergenic 50.0%
TAACGTATACGAAGGCGAGC+TGG - chr4_2:42463231-42463250 None:intergenic 50.0%
TCCTGCATATCGGGGATTGA+CGG + chr4_2:42463338-42463357 Msa0600650:CDS 50.0%
GGGTACATGGTGGCAAACAA+GGG + chr4_2:42463423-42463442 Msa0600650:CDS 50.0%
TACATGGTGGCAAACAAGGG+TGG + chr4_2:42463426-42463445 Msa0600650:CDS 50.0%
TCTAAGCTATCTTCGGGGGA+AGG + chr4_2:42463542-42463561 Msa0600650:intron 50.0%
! CCATCCGTCACTACTGCTTT+TGG - chr4_2:42463861-42463880 None:intergenic 50.0%
! CCAAAAGCAGTAGTGACGGA+TGG + chr4_2:42463858-42463877 Msa0600650:intron 50.0%
CGGATGGTGACATGTCTATG+AGG + chr4_2:42463874-42463893 Msa0600650:intron 50.0%
CATTTCACAGACTGTGTGCC+TGG + chr4_2:42463925-42463944 Msa0600650:intron 50.0%
!! TCCGGTGTTGATAACTGGTC+TGG + chr4_2:42464325-42464344 Msa0600650:CDS 50.0%
GAGAACATAGACCCCTCACC+CGG + chr4_2:42463196-42463215 Msa0600650:CDS 55.0%
TCCGTCAATCCCCGATATGC+AGG - chr4_2:42463342-42463361 None:intergenic 55.0%
GGGGTACATGGTGGCAAACA+AGG + chr4_2:42463422-42463441 Msa0600650:CDS 55.0%
GTACTCGGATTTCACCCCAG+AGG + chr4_2:42464016-42464035 Msa0600650:intron 55.0%
GAGAACATAGACCCCTCACC+CGG + chr4_2:42463196-42463215 Msa0600650:CDS 55.0%
TCCGTCAATCCCCGATATGC+AGG - chr4_2:42463342-42463361 None:intergenic 55.0%
GGGGTACATGGTGGCAAACA+AGG + chr4_2:42463422-42463441 Msa0600650:CDS 55.0%
GTACTCGGATTTCACCCCAG+AGG + chr4_2:42464016-42464035 Msa0600650:intron 55.0%
AGCTATCTTCGGGGGAAGGC+AGG + chr4_2:42463546-42463565 Msa0600650:intron 60.0%
AGCTATCTTCGGGGGAAGGC+AGG + chr4_2:42463546-42463565 Msa0600650:intron 60.0%
TCTTCGGGGGAAGGCAGGCT+TGG + chr4_2:42463551-42463570 Msa0600650:intron 65.0%
TCTTCGGGGGAAGGCAGGCT+TGG + chr4_2:42463551-42463570 Msa0600650:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 42462811 42464400 42462811 ID=Msa0600650;Name=Msa0600650
chr4_2 mRNA 42462811 42464400 42462811 ID=Msa0600650-mRNA-1;Parent=Msa0600650;Name=Msa0600650-mRNA-1;_AED=0.22;_eAED=0.27;_QI=0|0|0|1|0|0|4|0|239
chr4_2 exon 42462811 42463018 42462811 ID=Msa0600650-mRNA-1:exon:9228;Parent=Msa0600650-mRNA-1
chr4_2 exon 42463028 42463246 42463028 ID=Msa0600650-mRNA-1:exon:9229;Parent=Msa0600650-mRNA-1
chr4_2 exon 42463259 42463458 42463259 ID=Msa0600650-mRNA-1:exon:9230;Parent=Msa0600650-mRNA-1
chr4_2 exon 42464311 42464400 42464311 ID=Msa0600650-mRNA-1:exon:9231;Parent=Msa0600650-mRNA-1
chr4_2 CDS 42462811 42463018 42462811 ID=Msa0600650-mRNA-1:cds;Parent=Msa0600650-mRNA-1
chr4_2 CDS 42463028 42463246 42463028 ID=Msa0600650-mRNA-1:cds;Parent=Msa0600650-mRNA-1
chr4_2 CDS 42463259 42463458 42463259 ID=Msa0600650-mRNA-1:cds;Parent=Msa0600650-mRNA-1
chr4_2 CDS 42464311 42464400 42464311 ID=Msa0600650-mRNA-1:cds;Parent=Msa0600650-mRNA-1
Gene Sequence

>Msa0600650

ATGGATAGCTCTGATGATTCTGATTTTAATTTTGATGAGGATGGAGATAATGGGTATTCTACTTCTAGTGAAGACGATGAAAGTATAGAGTCTAGAGACCACGATGTCTCTGGTGATTACAATGAGAATTTGGATTCTTGTGTAATAGATGGTAGGTTTGTTAAGATTAATACCATGACGGCGGATGATATTATGAATCTTGATTTTGAAGAAGCTTATGCCTTTTATCAAAAGTATGCAAAAAGCACCGGTTTCGTTGTTAGGAAAGATAAAGTGTACCGCAGCAAAGTTGGGAAACAAATTGTAATGCGACAGTTTGTGTGCAATAAAAATGGATTAAGAAGCAAAAAACACTTGACTAGGGTCAATAGGAAAAGAGAACATAGACCCCTCACCCGGAATAATTGTCCAGCTCGCCTTCGTATACAAAGCTTGAGATGGAGAGTGGTAATTTTTGAAGGGTGTCATAACCATGAACTAACCCCATCAAAATATATACATTTATTTCCTGCATATCGGGGATTGACGGACGCTGATAAAGCTCAAGTTGACAGTATGCAATCGTACGGTATCAAAACATGTCATATAATGGGGTACATGGTGGCAAACAAGGGTGGATATGATGCTAGTAATACCTCTGATCCGGTGTTGATAACTGGTCTGGATAATATTGAGAAAGATGCTGCAAAGATTTATACATCCGAGATATTCAAAAAA

Protein sequence

>Msa0600650

MDSSDDSDFNFDEDGDNGYSTSSEDDESIESRDHDVSGDYNENLDSCVIDGRFVKINTMTADDIMNLDFEEAYAFYQKYAKSTGFVVRKDKVYRSKVGKQIVMRQFVCNKNGLRSKKHLTRVNRKREHRPLTRNNCPARLRIQSLRWRVVIFEGCHNHELTPSKYIHLFPAYRGLTDADKAQVDSMQSYGIKTCHIMGYMVANKGGYDASNTSDPVLITGLDNIEKDAAKIYTSEIFKK