AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0601320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0601320 MtrunA17_Chr4g0026311 93.571 140 3 1 1 134 1 140 5.89e-89 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0601320 AT2G27470.1 69.231 91 28 0 4 94 8 98 2.67e-41 138
Msa0601320 AT3G53340.5 33.051 118 69 4 7 124 34 141 4.64e-11 57.8
Msa0601320 AT3G53340.1 33.051 118 69 4 7 124 34 141 4.64e-11 57.8

Find 72 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAATTGGGATTGGAATT+AGG 0.112081 4_2:+43906103 None:intergenic
TAATTGGGATAATTGGAATT+AGG 0.162461 4_2:+43906079 None:intergenic
TTGAATTGGGATTGGAATTA+GGG 0.198515 4_2:+43906104 None:intergenic
TTGTACTTCTTGTTGTTAAT+TGG 0.207370 4_2:+43906133 None:intergenic
TTCTCATCTCCCTTTCCTTT+TGG 0.216918 4_2:+43904564 None:intergenic
AATTGGGATAATTGGAATTA+GGG 0.260536 4_2:+43906080 None:intergenic
CACACGGCGTACGATAGTTT+TGG 0.288672 4_2:+43906009 None:intergenic
ATCATTTGACTGCAAGGAAT+TGG 0.321482 4_2:+43904121 None:intergenic
CCTCACCCATTTCATTTCAT+TGG 0.328861 4_2:+43904481 None:intergenic
GAGCCGAGACATAAAACTTT+AGG 0.330270 4_2:-43904431 Msa0601320:three_prime_UTR
CTTCTTGTTGTTAATTGGTT+TGG 0.334087 4_2:+43906138 None:intergenic
CAAGAAGCTAAGTGGTGATA+TGG 0.339952 4_2:-43906168 Msa0601320:five_prime_UTR
TGAGCAGTTCTTTGTGAATT+CGG 0.342639 4_2:-43904239 Msa0601320:three_prime_UTR
ATACATAATTCCTTGTCATT+TGG 0.343023 4_2:-43904395 Msa0601320:three_prime_UTR
GATGAAGATTCTGGCACTTT+CGG 0.351884 4_2:+43905913 None:intergenic
ATTGGAATTAGGGTTTGAAT+TGG 0.378805 4_2:+43906090 None:intergenic
AAGGTAGTGGATGAAGATTC+TGG 0.398524 4_2:+43905904 None:intergenic
GAAGGCGAGCCGTCTGATAA+AGG 0.409116 4_2:-43904522 Msa0601320:CDS
CAGAGTTTACTGAGTTTGTT+GGG 0.413182 4_2:-43905323 Msa0601320:CDS
TGATGACCAATGAAATGAAA+TGG 0.413243 4_2:-43904487 Msa0601320:exon
TAGCCTCCACTAACCCTTGA+TGG 0.416246 4_2:-43904299 Msa0601320:three_prime_UTR
ATACATAGACTACATGATAA+AGG 0.427355 4_2:+43904068 None:intergenic
TGAATTCGGTTATGAATGTC+TGG 0.427835 4_2:-43904225 Msa0601320:three_prime_UTR
ATTAGGGTTTGAATTGGGAT+TGG 0.428830 4_2:+43906096 None:intergenic
TTGGAATTAGGGTTTGAATT+GGG 0.434343 4_2:+43906091 None:intergenic
TAGTCTATGTATATTATGTT+TGG 0.434406 4_2:-43904057 Msa0601320:three_prime_UTR
CCTCTAAAAGATTCTCTTGA+AGG 0.437256 4_2:-43905300 Msa0601320:intron
TTCCTTCCATCAAGGGTTAG+TGG 0.448575 4_2:+43904293 None:intergenic
ACAGAGTTTACTGAGTTTGT+TGG 0.451694 4_2:-43905324 Msa0601320:CDS
CTAAAAGCTTCCTTCCATCA+AGG 0.454247 4_2:+43904285 None:intergenic
AGCGGCAGTGCCAAAAGGAA+AGG 0.481373 4_2:-43904574 Msa0601320:CDS
GCAGGGCTAATGATATATGT+AGG 0.482928 4_2:-43905401 Msa0601320:intron
AACGGCAATGTCGCCGTCGT+CGG 0.485500 4_2:+43905961 None:intergenic
ATCGACAATGGCTGAGGCGG+AGG 0.486553 4_2:-43906038 Msa0601320:exon
TATCGTACGCCGTGTGGTGA+AGG 0.496035 4_2:-43906002 Msa0601320:CDS
CTTACGTAGCGGAAAGGTAG+TGG 0.497193 4_2:+43905891 None:intergenic
TAAAAGCTTCCTTCCATCAA+GGG 0.498227 4_2:+43904286 None:intergenic
TACATAGTTAACTAGTACGC+AGG 0.504865 4_2:+43904369 None:intergenic
GTCGCCGTCGTCGGAGCAAG+TGG 0.510785 4_2:+43905970 None:intergenic
GATGACCAATGAAATGAAAT+GGG 0.514129 4_2:-43904486 Msa0601320:exon
TCAAATTTGTTGCAGCATTG+AGG 0.516386 4_2:+43904194 None:intergenic
ATGTATATTATGTTTGGATG+AGG 0.517268 4_2:-43904051 Msa0601320:three_prime_UTR
GAGAAAATCGACAATGGCTG+AGG 0.540596 4_2:-43906044 Msa0601320:exon
TGAGAAGGGAAAGAAAAGAA+AGG 0.540607 4_2:-43904547 Msa0601320:CDS
AAAAGGAAAGGGAGATGAGA+AGG 0.549945 4_2:-43904562 Msa0601320:CDS
CAGGGCTAATGATATATGTA+GGG 0.556080 4_2:-43905400 Msa0601320:CDS
AAGAAAGCGGCAGTGCCAAA+AGG 0.559929 4_2:-43904579 Msa0601320:CDS
GCGGCAGTGCCAAAAGGAAA+GGG 0.560436 4_2:-43904573 Msa0601320:CDS
AAAATCGACAATGGCTGAGG+CGG 0.566675 4_2:-43906041 Msa0601320:exon
CATAACATCATTTGACTGCA+AGG 0.567923 4_2:+43904115 None:intergenic
CTCCACTAACCCTTGATGGA+AGG 0.568901 4_2:-43904295 Msa0601320:three_prime_UTR
CTTTCCACTTGCTCCGACGA+CGG 0.580800 4_2:-43905974 Msa0601320:CDS
AAAGGAAAGGGAGATGAGAA+GGG 0.589156 4_2:-43904561 Msa0601320:CDS
AAGCTAAGTGGTGATATGGC+GGG 0.590519 4_2:-43906164 Msa0601320:five_prime_UTR
CAAAACTATCGTACGCCGTG+TGG 0.603664 4_2:-43906008 Msa0601320:CDS
GGAAAGAAAAGAAAGGCGGA+AGG 0.603937 4_2:-43904540 Msa0601320:CDS
GAAGCTAAGTGGTGATATGG+CGG 0.605561 4_2:-43906165 Msa0601320:five_prime_UTR
GAAGGGAAAGAAAAGAAAGG+CGG 0.609576 4_2:-43904544 Msa0601320:CDS
AAGAAGAGCGTCTTTGTGAA+CGG 0.610289 4_2:+43905943 None:intergenic
GAGCCGTCTGATAAAGGTGA+TGG 0.613636 4_2:-43904516 Msa0601320:CDS
CCAATGAAATGAAATGGGTG+AGG 0.615041 4_2:-43904481 Msa0601320:exon
CAAGCACTTACGTAGCGGAA+AGG 0.621390 4_2:+43905885 None:intergenic
CCACCATCACCTTTATCAGA+CGG 0.625820 4_2:+43904513 None:intergenic
GAAGAAGAGAAAATCGACAA+TGG 0.639571 4_2:-43906050 Msa0601320:exon
CTTCCATCAAGGGTTAGTGG+AGG 0.650761 4_2:+43904296 None:intergenic
CAATGAAATGAAATGGGTGA+GGG 0.667060 4_2:-43904480 Msa0601320:exon
AAAGAATGCTGGGAAGAAAG+CGG 0.668115 4_2:-43904592 Msa0601320:CDS
CCGTCTGATAAAGGTGATGG+TGG 0.675418 4_2:-43904513 Msa0601320:CDS
ACGCAGGCATCCAAATGACA+AGG 0.677360 4_2:+43904385 None:intergenic
ATATATGTAGGGAGTCAAAG+AGG 0.682246 4_2:-43905389 Msa0601320:CDS
AAAGCTTCTCCTTCACCACA+CGG 0.706469 4_2:+43905993 None:intergenic
TTGAGTGTATGTAGTAAACG+TGG 0.725186 4_2:-43904166 Msa0601320:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATCAAATTTATCAAATTA+GGG + chr4_2:43904403-43904422 None:intergenic 15.0%
!!! GAAAATTATGGTTTATATTT+TGG - chr4_2:43904529-43904548 Msa0601320:CDS 15.0%
!!! AAAATTTTACAATGGTTTTT+GGG - chr4_2:43904563-43904582 Msa0601320:CDS 15.0%
!! TAATAAAGAGGATAAAAATT+AGG - chr4_2:43904622-43904641 Msa0601320:intron 15.0%
!! AATAAAGAGGATAAAAATTA+GGG - chr4_2:43904623-43904642 Msa0601320:intron 15.0%
!! ACATCAAATTTATCAAATTA+GGG + chr4_2:43904403-43904422 None:intergenic 15.0%
!!! GAAAATTATGGTTTATATTT+TGG - chr4_2:43904529-43904548 Msa0601320:CDS 15.0%
!!! AAAATTTTACAATGGTTTTT+GGG - chr4_2:43904563-43904582 Msa0601320:CDS 15.0%
!! TAATAAAGAGGATAAAAATT+AGG - chr4_2:43904622-43904641 Msa0601320:intron 15.0%
!! AATAAAGAGGATAAAAATTA+GGG - chr4_2:43904623-43904642 Msa0601320:intron 15.0%
!! GACATCAAATTTATCAAATT+AGG + chr4_2:43904404-43904423 None:intergenic 20.0%
!! AAATTGAAACTTTGATTGTA+AGG - chr4_2:43904498-43904517 Msa0601320:CDS 20.0%
!!! AATTATGGTTTATATTTTGG+AGG - chr4_2:43904532-43904551 Msa0601320:CDS 20.0%
!!! GAAAATTTTACAATGGTTTT+TGG - chr4_2:43904562-43904581 Msa0601320:CDS 20.0%
!!! TATTTTTCTTTTCATTGCAA+TGG - chr4_2:43905084-43905103 Msa0601320:intron 20.0%
!! TAGTCTATGTATATTATGTT+TGG - chr4_2:43906159-43906178 Msa0601320:five_prime_UTR 20.0%
!! GACATCAAATTTATCAAATT+AGG + chr4_2:43904404-43904423 None:intergenic 20.0%
!! AAATTGAAACTTTGATTGTA+AGG - chr4_2:43904498-43904517 Msa0601320:CDS 20.0%
!!! AATTATGGTTTATATTTTGG+AGG - chr4_2:43904532-43904551 Msa0601320:CDS 20.0%
!!! GAAAATTTTACAATGGTTTT+TGG - chr4_2:43904562-43904581 Msa0601320:CDS 20.0%
!!! TATTTTTCTTTTCATTGCAA+TGG - chr4_2:43905084-43905103 Msa0601320:intron 20.0%
!! TAGTCTATGTATATTATGTT+TGG - chr4_2:43906159-43906178 Msa0601320:five_prime_UTR 20.0%
!!! TTGTACTTCTTGTTGTTAAT+TGG + chr4_2:43904086-43904105 None:intergenic 25.0%
! AATTGGGATAATTGGAATTA+GGG + chr4_2:43904139-43904158 None:intergenic 25.0%
! TAATTGGGATAATTGGAATT+AGG + chr4_2:43904140-43904159 None:intergenic 25.0%
!!! CGATTTTTAATTGGGATAAT+TGG + chr4_2:43904147-43904166 None:intergenic 25.0%
!!! CTCTTCTTCGATTTTTAATT+GGG + chr4_2:43904155-43904174 None:intergenic 25.0%
!! TCTCTTCTTCGATTTTTAAT+TGG + chr4_2:43904156-43904175 None:intergenic 25.0%
! AATTATTTGTGCGCAAATTA+GGG + chr4_2:43904371-43904390 None:intergenic 25.0%
! TAATTATTTGTGCGCAAATT+AGG + chr4_2:43904372-43904391 None:intergenic 25.0%
!! TAATTGGGGAAATTTTGTAA+TGG - chr4_2:43904444-43904463 Msa0601320:three_prime_UTR 25.0%
!! AATTGGGGAAATTTTGTAAT+GGG - chr4_2:43904445-43904464 Msa0601320:three_prime_UTR 25.0%
!!! TTTATATTTTGGAGGCAATT+GGG - chr4_2:43904540-43904559 Msa0601320:CDS 25.0%
!! CAATTGGGAAAATTTTACAA+TGG - chr4_2:43904555-43904574 Msa0601320:CDS 25.0%
! TTCATGGGTGATTTAAAAAA+TGG - chr4_2:43904591-43904610 Msa0601320:CDS 25.0%
! TCATGGGTGATTTAAAAAAT+GGG - chr4_2:43904592-43904611 Msa0601320:CDS 25.0%
!! ATAAAAATGGGAACTTTTTG+AGG - chr4_2:43904753-43904772 Msa0601320:intron 25.0%
!!! CATTTTAGAGTTACAATTCA+TGG + chr4_2:43905223-43905242 None:intergenic 25.0%
!!! TAACCTAAAGTTTTATGTCT+CGG + chr4_2:43905791-43905810 None:intergenic 25.0%
! ATACATAATTCCTTGTCATT+TGG - chr4_2:43905821-43905840 Msa0601320:intron 25.0%
!!! CTTTTAGGAAAGAATATGAA+GGG - chr4_2:43905947-43905966 Msa0601320:CDS 25.0%
! ATACATAGACTACATGATAA+AGG + chr4_2:43906151-43906170 None:intergenic 25.0%
! ATGTATATTATGTTTGGATG+AGG - chr4_2:43906165-43906184 Msa0601320:five_prime_UTR 25.0%
!!! TTGTACTTCTTGTTGTTAAT+TGG + chr4_2:43904086-43904105 None:intergenic 25.0%
! AATTGGGATAATTGGAATTA+GGG + chr4_2:43904139-43904158 None:intergenic 25.0%
! TAATTGGGATAATTGGAATT+AGG + chr4_2:43904140-43904159 None:intergenic 25.0%
!!! CGATTTTTAATTGGGATAAT+TGG + chr4_2:43904147-43904166 None:intergenic 25.0%
!!! CTCTTCTTCGATTTTTAATT+GGG + chr4_2:43904155-43904174 None:intergenic 25.0%
!! TCTCTTCTTCGATTTTTAAT+TGG + chr4_2:43904156-43904175 None:intergenic 25.0%
! AATTATTTGTGCGCAAATTA+GGG + chr4_2:43904371-43904390 None:intergenic 25.0%
! TAATTATTTGTGCGCAAATT+AGG + chr4_2:43904372-43904391 None:intergenic 25.0%
!! TAATTGGGGAAATTTTGTAA+TGG - chr4_2:43904444-43904463 Msa0601320:three_prime_UTR 25.0%
!! AATTGGGGAAATTTTGTAAT+GGG - chr4_2:43904445-43904464 Msa0601320:three_prime_UTR 25.0%
!!! TTTATATTTTGGAGGCAATT+GGG - chr4_2:43904540-43904559 Msa0601320:CDS 25.0%
!! CAATTGGGAAAATTTTACAA+TGG - chr4_2:43904555-43904574 Msa0601320:CDS 25.0%
! TTCATGGGTGATTTAAAAAA+TGG - chr4_2:43904591-43904610 Msa0601320:CDS 25.0%
! TCATGGGTGATTTAAAAAAT+GGG - chr4_2:43904592-43904611 Msa0601320:CDS 25.0%
!! ATAAAAATGGGAACTTTTTG+AGG - chr4_2:43904753-43904772 Msa0601320:intron 25.0%
!!! CATTTTAGAGTTACAATTCA+TGG + chr4_2:43905223-43905242 None:intergenic 25.0%
!!! TAACCTAAAGTTTTATGTCT+CGG + chr4_2:43905791-43905810 None:intergenic 25.0%
! ATACATAATTCCTTGTCATT+TGG - chr4_2:43905821-43905840 Msa0601320:intron 25.0%
!!! CTTTTAGGAAAGAATATGAA+GGG - chr4_2:43905947-43905966 Msa0601320:CDS 25.0%
! ATACATAGACTACATGATAA+AGG + chr4_2:43906151-43906170 None:intergenic 25.0%
! ATGTATATTATGTTTGGATG+AGG - chr4_2:43906165-43906184 Msa0601320:five_prime_UTR 25.0%
!! GAAATTTTCAAGAAGCTAAG+TGG - chr4_2:43904040-43904059 Msa0601320:three_prime_UTR 30.0%
!! CTTCTTGTTGTTAATTGGTT+TGG + chr4_2:43904081-43904100 None:intergenic 30.0%
TTGAATTGGGATTGGAATTA+GGG + chr4_2:43904115-43904134 None:intergenic 30.0%
TTTGAATTGGGATTGGAATT+AGG + chr4_2:43904116-43904135 None:intergenic 30.0%
TTGGAATTAGGGTTTGAATT+GGG + chr4_2:43904128-43904147 None:intergenic 30.0%
ATTGGAATTAGGGTTTGAAT+TGG + chr4_2:43904129-43904148 None:intergenic 30.0%
AAATTAGGGTTTCAGATAGA+AGG + chr4_2:43904357-43904376 None:intergenic 30.0%
!!! GGAAATTTTGTAATGGGTTT+TGG - chr4_2:43904451-43904470 Msa0601320:three_prime_UTR 30.0%
TGAAACTTTGATTGTAAGGA+AGG - chr4_2:43904502-43904521 Msa0601320:CDS 30.0%
AAGGAAGGAGATGAAAATTA+TGG - chr4_2:43904517-43904536 Msa0601320:CDS 30.0%
!! GTTTATATTTTGGAGGCAAT+TGG - chr4_2:43904539-43904558 Msa0601320:CDS 30.0%
ATGGGAACTTTGTAATAAAG+AGG - chr4_2:43904610-43904629 Msa0601320:intron 30.0%
AAAAATTAGGGTTCGTAGTT+TGG - chr4_2:43904635-43904654 Msa0601320:intron 30.0%
! AATGGGGAAAATTTTGCATT+GGG - chr4_2:43904662-43904681 Msa0601320:intron 30.0%
! GAAAATTTTGCATTGGGTTT+TGG - chr4_2:43904668-43904687 Msa0601320:intron 30.0%
TTCCTGGGTGATTATAAAAA+TGG - chr4_2:43904740-43904759 Msa0601320:intron 30.0%
TCCTGGGTGATTATAAAAAT+GGG - chr4_2:43904741-43904760 Msa0601320:intron 30.0%
!! TTTGTGTTGTTTGTATTTGC+AGG - chr4_2:43904797-43904816 Msa0601320:intron 30.0%
!! TTGTGTTGTTTGTATTTGCA+GGG - chr4_2:43904798-43904817 Msa0601320:intron 30.0%
!!! TGTTATGACTGCTTTGTTTT+CGG - chr4_2:43904956-43904975 Msa0601320:intron 30.0%
! TGTCATTTGAGCAATCATTA+TGG - chr4_2:43905061-43905080 Msa0601320:intron 30.0%
TGCAATGGAAGTTCAAAAAA+AGG - chr4_2:43905099-43905118 Msa0601320:intron 30.0%
AATCCCCATTTAGTTGAAAA+TGG - chr4_2:43905154-43905173 Msa0601320:intron 30.0%
ATCCCCATTTAGTTGAAAAT+GGG - chr4_2:43905155-43905174 Msa0601320:intron 30.0%
! AACCCATTTTCAACTAAATG+GGG + chr4_2:43905160-43905179 None:intergenic 30.0%
! CAACCCATTTTCAACTAAAT+GGG + chr4_2:43905161-43905180 None:intergenic 30.0%
!!! CAGTTTTAGGCTTTTAACAA+TGG + chr4_2:43905250-43905269 None:intergenic 30.0%
! GCATAGAATAACTCAGTTTT+AGG + chr4_2:43905263-43905282 None:intergenic 30.0%
TTATGCTACATAAACAAGTG+TGG - chr4_2:43905357-43905376 Msa0601320:CDS 30.0%
AAGAGGAATGAAACTATTTG+TGG - chr4_2:43905418-43905437 Msa0601320:intron 30.0%
AGAGGAATGAAACTATTTGT+GGG - chr4_2:43905419-43905438 Msa0601320:intron 30.0%
!! GTCAAAAAGAAAAAGTGTCA+AGG + chr4_2:43905587-43905606 None:intergenic 30.0%
! TTTTTGACCTATCAGAGTTT+AGG - chr4_2:43905599-43905618 Msa0601320:intron 30.0%
! TCTTTTTCCTAAACTCTGAT+AGG + chr4_2:43905609-43905628 None:intergenic 30.0%
AGTTTAGGAAAAAGAATGCT+GGG - chr4_2:43905614-43905633 Msa0601320:intron 30.0%
TGATGACCAATGAAATGAAA+TGG - chr4_2:43905729-43905748 Msa0601320:intron 30.0%
GATGACCAATGAAATGAAAT+GGG - chr4_2:43905730-43905749 Msa0601320:intron 30.0%
! AGCGTTTTACATACAAAACT+TGG + chr4_2:43905898-43905917 None:intergenic 30.0%
!! GCTTTTAGGAAAGAATATGA+AGG - chr4_2:43905946-43905965 Msa0601320:CDS 30.0%
!! GAAATTTTCAAGAAGCTAAG+TGG - chr4_2:43904040-43904059 Msa0601320:three_prime_UTR 30.0%
!! CTTCTTGTTGTTAATTGGTT+TGG + chr4_2:43904081-43904100 None:intergenic 30.0%
TTGAATTGGGATTGGAATTA+GGG + chr4_2:43904115-43904134 None:intergenic 30.0%
TTTGAATTGGGATTGGAATT+AGG + chr4_2:43904116-43904135 None:intergenic 30.0%
TTGGAATTAGGGTTTGAATT+GGG + chr4_2:43904128-43904147 None:intergenic 30.0%
ATTGGAATTAGGGTTTGAAT+TGG + chr4_2:43904129-43904148 None:intergenic 30.0%
AAATTAGGGTTTCAGATAGA+AGG + chr4_2:43904357-43904376 None:intergenic 30.0%
!!! GGAAATTTTGTAATGGGTTT+TGG - chr4_2:43904451-43904470 Msa0601320:three_prime_UTR 30.0%
TGAAACTTTGATTGTAAGGA+AGG - chr4_2:43904502-43904521 Msa0601320:CDS 30.0%
AAGGAAGGAGATGAAAATTA+TGG - chr4_2:43904517-43904536 Msa0601320:CDS 30.0%
!! GTTTATATTTTGGAGGCAAT+TGG - chr4_2:43904539-43904558 Msa0601320:CDS 30.0%
ATGGGAACTTTGTAATAAAG+AGG - chr4_2:43904610-43904629 Msa0601320:intron 30.0%
AAAAATTAGGGTTCGTAGTT+TGG - chr4_2:43904635-43904654 Msa0601320:intron 30.0%
! AATGGGGAAAATTTTGCATT+GGG - chr4_2:43904662-43904681 Msa0601320:intron 30.0%
! GAAAATTTTGCATTGGGTTT+TGG - chr4_2:43904668-43904687 Msa0601320:intron 30.0%
TTCCTGGGTGATTATAAAAA+TGG - chr4_2:43904740-43904759 Msa0601320:intron 30.0%
TCCTGGGTGATTATAAAAAT+GGG - chr4_2:43904741-43904760 Msa0601320:intron 30.0%
!! TTTGTGTTGTTTGTATTTGC+AGG - chr4_2:43904797-43904816 Msa0601320:intron 30.0%
!! TTGTGTTGTTTGTATTTGCA+GGG - chr4_2:43904798-43904817 Msa0601320:intron 30.0%
!!! TGTTATGACTGCTTTGTTTT+CGG - chr4_2:43904956-43904975 Msa0601320:intron 30.0%
! TGTCATTTGAGCAATCATTA+TGG - chr4_2:43905061-43905080 Msa0601320:intron 30.0%
TGCAATGGAAGTTCAAAAAA+AGG - chr4_2:43905099-43905118 Msa0601320:intron 30.0%
AATCCCCATTTAGTTGAAAA+TGG - chr4_2:43905154-43905173 Msa0601320:intron 30.0%
ATCCCCATTTAGTTGAAAAT+GGG - chr4_2:43905155-43905174 Msa0601320:intron 30.0%
! AACCCATTTTCAACTAAATG+GGG + chr4_2:43905160-43905179 None:intergenic 30.0%
! CAACCCATTTTCAACTAAAT+GGG + chr4_2:43905161-43905180 None:intergenic 30.0%
!!! CAGTTTTAGGCTTTTAACAA+TGG + chr4_2:43905250-43905269 None:intergenic 30.0%
! GCATAGAATAACTCAGTTTT+AGG + chr4_2:43905263-43905282 None:intergenic 30.0%
TTATGCTACATAAACAAGTG+TGG - chr4_2:43905357-43905376 Msa0601320:CDS 30.0%
AAGAGGAATGAAACTATTTG+TGG - chr4_2:43905418-43905437 Msa0601320:intron 30.0%
AGAGGAATGAAACTATTTGT+GGG - chr4_2:43905419-43905438 Msa0601320:intron 30.0%
!! GTCAAAAAGAAAAAGTGTCA+AGG + chr4_2:43905587-43905606 None:intergenic 30.0%
! TTTTTGACCTATCAGAGTTT+AGG - chr4_2:43905599-43905618 Msa0601320:intron 30.0%
! TCTTTTTCCTAAACTCTGAT+AGG + chr4_2:43905609-43905628 None:intergenic 30.0%
AGTTTAGGAAAAAGAATGCT+GGG - chr4_2:43905614-43905633 Msa0601320:intron 30.0%
TGATGACCAATGAAATGAAA+TGG - chr4_2:43905729-43905748 Msa0601320:intron 30.0%
GATGACCAATGAAATGAAAT+GGG - chr4_2:43905730-43905749 Msa0601320:intron 30.0%
! AGCGTTTTACATACAAAACT+TGG + chr4_2:43905898-43905917 None:intergenic 30.0%
!! GCTTTTAGGAAAGAATATGA+AGG - chr4_2:43905946-43905965 Msa0601320:CDS 30.0%
ATTAGGGTTTGAATTGGGAT+TGG + chr4_2:43904123-43904142 None:intergenic 35.0%
GAAGAAGAGAAAATCGACAA+TGG - chr4_2:43904166-43904185 Msa0601320:three_prime_UTR 35.0%
!! GATGTCTGAAATTCCCTTTT+TGG - chr4_2:43904418-43904437 Msa0601320:three_prime_UTR 35.0%
!! ATTCCCTTTTTGGAGGTAAT+TGG - chr4_2:43904428-43904447 Msa0601320:three_prime_UTR 35.0%
!! TTCCCTTTTTGGAGGTAATT+GGG - chr4_2:43904429-43904448 Msa0601320:three_prime_UTR 35.0%
!!! TGGTTTTTGGGATTGATTCA+TGG - chr4_2:43904575-43904594 Msa0601320:CDS 35.0%
!!! GGTTTTTGGGATTGATTCAT+GGG - chr4_2:43904576-43904595 Msa0601320:CDS 35.0%
! CAATGGGGAAAATTTTGCAT+TGG - chr4_2:43904661-43904680 Msa0601320:intron 35.0%
!! TTGGCTATTTTGGAGGAAAT+TGG - chr4_2:43904687-43904706 Msa0601320:intron 35.0%
!! TGGCTATTTTGGAGGAAATT+GGG - chr4_2:43904688-43904707 Msa0601320:intron 35.0%
!!! AAATTGGGGAAGTTTTGTTG+TGG - chr4_2:43904703-43904722 Msa0601320:intron 35.0%
!!! AATTGGGGAAGTTTTGTTGT+GGG - chr4_2:43904704-43904723 Msa0601320:intron 35.0%
!! TCCCATTTTTATAATCACCC+AGG + chr4_2:43904745-43904764 None:intergenic 35.0%
CAGGGCTAATGATATATGTA+GGG - chr4_2:43904816-43904835 Msa0601320:intron 35.0%
ATATATGTAGGGAGTCAAAG+AGG - chr4_2:43904827-43904846 Msa0601320:intron 35.0%
ACAGAGTTTACTGAGTTTGT+TGG - chr4_2:43904892-43904911 Msa0601320:intron 35.0%
! CAGAGTTTACTGAGTTTGTT+GGG - chr4_2:43904893-43904912 Msa0601320:intron 35.0%
! CCTTCAAGAGAATCTTTTAG+AGG + chr4_2:43904919-43904938 None:intergenic 35.0%
! CCTCTAAAAGATTCTCTTGA+AGG - chr4_2:43904916-43904935 Msa0601320:intron 35.0%
AACAAAGCAGTCATAACACA+GGG + chr4_2:43904954-43904973 None:intergenic 35.0%
AAACAAAGCAGTCATAACAC+AGG + chr4_2:43904955-43904974 None:intergenic 35.0%
!! AGAGTGAAGTGAAAGTATCA+TGG - chr4_2:43905030-43905049 Msa0601320:intron 35.0%
! CCAACCCATTTTCAACTAAA+TGG + chr4_2:43905162-43905181 None:intergenic 35.0%
CCATTTAGTTGAAAATGGGT+TGG - chr4_2:43905159-43905178 Msa0601320:intron 35.0%
AACTGAGTTATTCTATGCTC+TGG - chr4_2:43905265-43905284 Msa0601320:intron 35.0%
ATGGAAGATATGATCTTGCT+TGG - chr4_2:43905318-43905337 Msa0601320:CDS 35.0%
GTCAGCTAGTGAGTAATATT+TGG - chr4_2:43905379-43905398 Msa0601320:CDS 35.0%
GCTAGTGAGTAATATTTGGT+TGG - chr4_2:43905383-43905402 Msa0601320:CDS 35.0%
GAGTTTAGGAAAAAGAATGC+TGG - chr4_2:43905613-43905632 Msa0601320:intron 35.0%
TGAGAAGGGAAAGAAAAGAA+AGG - chr4_2:43905669-43905688 Msa0601320:intron 35.0%
CAATGAAATGAAATGGGTGA+GGG - chr4_2:43905736-43905755 Msa0601320:intron 35.0%
TACATAGTTAACTAGTACGC+AGG + chr4_2:43905850-43905869 None:intergenic 35.0%
TAAAAGCTTCCTTCCATCAA+GGG + chr4_2:43905933-43905952 None:intergenic 35.0%
TGAGCAGTTCTTTGTGAATT+CGG - chr4_2:43905977-43905996 Msa0601320:CDS 35.0%
TGAATTCGGTTATGAATGTC+TGG - chr4_2:43905991-43906010 Msa0601320:CDS 35.0%
!! TCAAATTTGTTGCAGCATTG+AGG + chr4_2:43906025-43906044 None:intergenic 35.0%
TTGAGTGTATGTAGTAAACG+TGG - chr4_2:43906050-43906069 Msa0601320:exon 35.0%
ATCATTTGACTGCAAGGAAT+TGG + chr4_2:43906098-43906117 None:intergenic 35.0%
CATAACATCATTTGACTGCA+AGG + chr4_2:43906104-43906123 None:intergenic 35.0%
ATTAGGGTTTGAATTGGGAT+TGG + chr4_2:43904123-43904142 None:intergenic 35.0%
GAAGAAGAGAAAATCGACAA+TGG - chr4_2:43904166-43904185 Msa0601320:three_prime_UTR 35.0%
!! GATGTCTGAAATTCCCTTTT+TGG - chr4_2:43904418-43904437 Msa0601320:three_prime_UTR 35.0%
!! ATTCCCTTTTTGGAGGTAAT+TGG - chr4_2:43904428-43904447 Msa0601320:three_prime_UTR 35.0%
!! TTCCCTTTTTGGAGGTAATT+GGG - chr4_2:43904429-43904448 Msa0601320:three_prime_UTR 35.0%
!!! TGGTTTTTGGGATTGATTCA+TGG - chr4_2:43904575-43904594 Msa0601320:CDS 35.0%
!!! GGTTTTTGGGATTGATTCAT+GGG - chr4_2:43904576-43904595 Msa0601320:CDS 35.0%
! CAATGGGGAAAATTTTGCAT+TGG - chr4_2:43904661-43904680 Msa0601320:intron 35.0%
!! TTGGCTATTTTGGAGGAAAT+TGG - chr4_2:43904687-43904706 Msa0601320:intron 35.0%
!! TGGCTATTTTGGAGGAAATT+GGG - chr4_2:43904688-43904707 Msa0601320:intron 35.0%
!!! AAATTGGGGAAGTTTTGTTG+TGG - chr4_2:43904703-43904722 Msa0601320:intron 35.0%
!!! AATTGGGGAAGTTTTGTTGT+GGG - chr4_2:43904704-43904723 Msa0601320:intron 35.0%
!! TCCCATTTTTATAATCACCC+AGG + chr4_2:43904745-43904764 None:intergenic 35.0%
CAGGGCTAATGATATATGTA+GGG - chr4_2:43904816-43904835 Msa0601320:intron 35.0%
ATATATGTAGGGAGTCAAAG+AGG - chr4_2:43904827-43904846 Msa0601320:intron 35.0%
ACAGAGTTTACTGAGTTTGT+TGG - chr4_2:43904892-43904911 Msa0601320:intron 35.0%
! CAGAGTTTACTGAGTTTGTT+GGG - chr4_2:43904893-43904912 Msa0601320:intron 35.0%
! CCTTCAAGAGAATCTTTTAG+AGG + chr4_2:43904919-43904938 None:intergenic 35.0%
! CCTCTAAAAGATTCTCTTGA+AGG - chr4_2:43904916-43904935 Msa0601320:intron 35.0%
AACAAAGCAGTCATAACACA+GGG + chr4_2:43904954-43904973 None:intergenic 35.0%
AAACAAAGCAGTCATAACAC+AGG + chr4_2:43904955-43904974 None:intergenic 35.0%
!! AGAGTGAAGTGAAAGTATCA+TGG - chr4_2:43905030-43905049 Msa0601320:intron 35.0%
! CCAACCCATTTTCAACTAAA+TGG + chr4_2:43905162-43905181 None:intergenic 35.0%
CCATTTAGTTGAAAATGGGT+TGG - chr4_2:43905159-43905178 Msa0601320:intron 35.0%
AACTGAGTTATTCTATGCTC+TGG - chr4_2:43905265-43905284 Msa0601320:intron 35.0%
ATGGAAGATATGATCTTGCT+TGG - chr4_2:43905318-43905337 Msa0601320:CDS 35.0%
GTCAGCTAGTGAGTAATATT+TGG - chr4_2:43905379-43905398 Msa0601320:CDS 35.0%
GCTAGTGAGTAATATTTGGT+TGG - chr4_2:43905383-43905402 Msa0601320:CDS 35.0%
GAGTTTAGGAAAAAGAATGC+TGG - chr4_2:43905613-43905632 Msa0601320:intron 35.0%
TGAGAAGGGAAAGAAAAGAA+AGG - chr4_2:43905669-43905688 Msa0601320:intron 35.0%
CAATGAAATGAAATGGGTGA+GGG - chr4_2:43905736-43905755 Msa0601320:intron 35.0%
TACATAGTTAACTAGTACGC+AGG + chr4_2:43905850-43905869 None:intergenic 35.0%
TAAAAGCTTCCTTCCATCAA+GGG + chr4_2:43905933-43905952 None:intergenic 35.0%
TGAGCAGTTCTTTGTGAATT+CGG - chr4_2:43905977-43905996 Msa0601320:CDS 35.0%
TGAATTCGGTTATGAATGTC+TGG - chr4_2:43905991-43906010 Msa0601320:CDS 35.0%
!! TCAAATTTGTTGCAGCATTG+AGG + chr4_2:43906025-43906044 None:intergenic 35.0%
TTGAGTGTATGTAGTAAACG+TGG - chr4_2:43906050-43906069 Msa0601320:exon 35.0%
ATCATTTGACTGCAAGGAAT+TGG + chr4_2:43906098-43906117 None:intergenic 35.0%
CATAACATCATTTGACTGCA+AGG + chr4_2:43906104-43906123 None:intergenic 35.0%
CAAGAAGCTAAGTGGTGATA+TGG - chr4_2:43904048-43904067 Msa0601320:three_prime_UTR 40.0%
!! AAGAAGAGCGTCTTTGTGAA+CGG + chr4_2:43904276-43904295 None:intergenic 40.0%
GATGAAGATTCTGGCACTTT+CGG + chr4_2:43904306-43904325 None:intergenic 40.0%
!! AAGGTAGTGGATGAAGATTC+TGG + chr4_2:43904315-43904334 None:intergenic 40.0%
!! GTCTGAAATTCCCTTTTTGG+AGG - chr4_2:43904421-43904440 Msa0601320:three_prime_UTR 40.0%
!! TCCCTTTTTGGAGGTAATTG+GGG - chr4_2:43904430-43904449 Msa0601320:three_prime_UTR 40.0%
TCCCCAATTACCTCCAAAAA+GGG + chr4_2:43904434-43904453 None:intergenic 40.0%
TTCCCCAATTACCTCCAAAA+AGG + chr4_2:43904435-43904454 None:intergenic 40.0%
AATTAGGGTTCGTAGTTTGG+AGG - chr4_2:43904638-43904657 Msa0601320:intron 40.0%
!!! GCATTGGGTTTTGGCTATTT+TGG - chr4_2:43904677-43904696 Msa0601320:intron 40.0%
!!! TTGGGTTTTGGCTATTTTGG+AGG - chr4_2:43904680-43904699 Msa0601320:intron 40.0%
!! GGCTATTTTGGAGGAAATTG+GGG - chr4_2:43904689-43904708 Msa0601320:intron 40.0%
!!! GGAAGTTTTGTTGTGGGTTT+TGG - chr4_2:43904710-43904729 Msa0601320:intron 40.0%
!!! GGTTTTGGAGATTGATTCCT+GGG - chr4_2:43904725-43904744 Msa0601320:intron 40.0%
GCAGGGCTAATGATATATGT+AGG - chr4_2:43904815-43904834 Msa0601320:intron 40.0%
TGAACCAACTCTAAGCATGA+TGG - chr4_2:43905299-43905318 Msa0601320:intron 40.0%
TCTTCCATCATGCTTAGAGT+TGG + chr4_2:43905306-43905325 None:intergenic 40.0%
! GTTGGTTCATAGCTACAAAG+AGG - chr4_2:43905401-43905420 Msa0601320:intron 40.0%
AAAGAATGCTGGGAAGAAAG+CGG - chr4_2:43905624-43905643 Msa0601320:intron 40.0%
! TTCTCATCTCCCTTTCCTTT+TGG + chr4_2:43905655-43905674 None:intergenic 40.0%
AAAAGGAAAGGGAGATGAGA+AGG - chr4_2:43905654-43905673 Msa0601320:intron 40.0%
AAAGGAAAGGGAGATGAGAA+GGG - chr4_2:43905655-43905674 Msa0601320:intron 40.0%
GAAGGGAAAGAAAAGAAAGG+CGG - chr4_2:43905672-43905691 Msa0601320:intron 40.0%
CCTCACCCATTTCATTTCAT+TGG + chr4_2:43905738-43905757 None:intergenic 40.0%
CCAATGAAATGAAATGGGTG+AGG - chr4_2:43905735-43905754 Msa0601320:intron 40.0%
GAGCCGAGACATAAAACTTT+AGG - chr4_2:43905785-43905804 Msa0601320:intron 40.0%
CTAAAAGCTTCCTTCCATCA+AGG + chr4_2:43905934-43905953 None:intergenic 40.0%
! CTTGATGGAAGGAAGCTTTT+AGG - chr4_2:43905932-43905951 Msa0601320:CDS 40.0%
CAAGAAGCTAAGTGGTGATA+TGG - chr4_2:43904048-43904067 Msa0601320:three_prime_UTR 40.0%
!! AAGAAGAGCGTCTTTGTGAA+CGG + chr4_2:43904276-43904295 None:intergenic 40.0%
GATGAAGATTCTGGCACTTT+CGG + chr4_2:43904306-43904325 None:intergenic 40.0%
!! AAGGTAGTGGATGAAGATTC+TGG + chr4_2:43904315-43904334 None:intergenic 40.0%
!! GTCTGAAATTCCCTTTTTGG+AGG - chr4_2:43904421-43904440 Msa0601320:three_prime_UTR 40.0%
!! TCCCTTTTTGGAGGTAATTG+GGG - chr4_2:43904430-43904449 Msa0601320:three_prime_UTR 40.0%
TCCCCAATTACCTCCAAAAA+GGG + chr4_2:43904434-43904453 None:intergenic 40.0%
TTCCCCAATTACCTCCAAAA+AGG + chr4_2:43904435-43904454 None:intergenic 40.0%
AATTAGGGTTCGTAGTTTGG+AGG - chr4_2:43904638-43904657 Msa0601320:intron 40.0%
!!! GCATTGGGTTTTGGCTATTT+TGG - chr4_2:43904677-43904696 Msa0601320:intron 40.0%
!!! TTGGGTTTTGGCTATTTTGG+AGG - chr4_2:43904680-43904699 Msa0601320:intron 40.0%
!! GGCTATTTTGGAGGAAATTG+GGG - chr4_2:43904689-43904708 Msa0601320:intron 40.0%
!!! GGAAGTTTTGTTGTGGGTTT+TGG - chr4_2:43904710-43904729 Msa0601320:intron 40.0%
!!! GGTTTTGGAGATTGATTCCT+GGG - chr4_2:43904725-43904744 Msa0601320:intron 40.0%
GCAGGGCTAATGATATATGT+AGG - chr4_2:43904815-43904834 Msa0601320:intron 40.0%
TGAACCAACTCTAAGCATGA+TGG - chr4_2:43905299-43905318 Msa0601320:intron 40.0%
TCTTCCATCATGCTTAGAGT+TGG + chr4_2:43905306-43905325 None:intergenic 40.0%
! GTTGGTTCATAGCTACAAAG+AGG - chr4_2:43905401-43905420 Msa0601320:intron 40.0%
AAAGAATGCTGGGAAGAAAG+CGG - chr4_2:43905624-43905643 Msa0601320:intron 40.0%
! TTCTCATCTCCCTTTCCTTT+TGG + chr4_2:43905655-43905674 None:intergenic 40.0%
AAAAGGAAAGGGAGATGAGA+AGG - chr4_2:43905654-43905673 Msa0601320:intron 40.0%
AAAGGAAAGGGAGATGAGAA+GGG - chr4_2:43905655-43905674 Msa0601320:intron 40.0%
GAAGGGAAAGAAAAGAAAGG+CGG - chr4_2:43905672-43905691 Msa0601320:intron 40.0%
CCTCACCCATTTCATTTCAT+TGG + chr4_2:43905738-43905757 None:intergenic 40.0%
CCAATGAAATGAAATGGGTG+AGG - chr4_2:43905735-43905754 Msa0601320:intron 40.0%
GAGCCGAGACATAAAACTTT+AGG - chr4_2:43905785-43905804 Msa0601320:intron 40.0%
CTAAAAGCTTCCTTCCATCA+AGG + chr4_2:43905934-43905953 None:intergenic 40.0%
! CTTGATGGAAGGAAGCTTTT+AGG - chr4_2:43905932-43905951 Msa0601320:CDS 40.0%
GAAGCTAAGTGGTGATATGG+CGG - chr4_2:43904051-43904070 Msa0601320:three_prime_UTR 45.0%
AAGCTAAGTGGTGATATGGC+GGG - chr4_2:43904052-43904071 Msa0601320:three_prime_UTR 45.0%
GAGAAAATCGACAATGGCTG+AGG - chr4_2:43904172-43904191 Msa0601320:three_prime_UTR 45.0%
AAAATCGACAATGGCTGAGG+CGG - chr4_2:43904175-43904194 Msa0601320:three_prime_UTR 45.0%
! ACACGGCGTACGATAGTTTT+GGG + chr4_2:43904209-43904228 None:intergenic 45.0%
AAAGCTTCTCCTTCACCACA+CGG + chr4_2:43904226-43904245 None:intergenic 45.0%
GTTCGTAGTTTGGAGGCAAT+GGG - chr4_2:43904645-43904664 Msa0601320:intron 45.0%
TTCGTAGTTTGGAGGCAATG+GGG - chr4_2:43904646-43904665 Msa0601320:intron 45.0%
!!! GGGTTTTGGAGATTGATTCC+TGG - chr4_2:43904724-43904743 Msa0601320:intron 45.0%
GACCAATATCTGCCCTAACT+TGG - chr4_2:43905557-43905576 Msa0601320:intron 45.0%
TGCCAAGTTAGGGCAGATAT+TGG + chr4_2:43905562-43905581 None:intergenic 45.0%
TGTCAAGGTCTGCCAAGTTA+GGG + chr4_2:43905572-43905591 None:intergenic 45.0%
GGAAAGAAAAGAAAGGCGGA+AGG - chr4_2:43905676-43905695 Msa0601320:intron 45.0%
CCACCATCACCTTTATCAGA+CGG + chr4_2:43905706-43905725 None:intergenic 45.0%
! GTTTTATGTCTCGGCTCAGT+TGG + chr4_2:43905782-43905801 None:intergenic 45.0%
TTCCTTCCATCAAGGGTTAG+TGG + chr4_2:43905926-43905945 None:intergenic 45.0%
GAAGCTAAGTGGTGATATGG+CGG - chr4_2:43904051-43904070 Msa0601320:three_prime_UTR 45.0%
AAGCTAAGTGGTGATATGGC+GGG - chr4_2:43904052-43904071 Msa0601320:three_prime_UTR 45.0%
GAGAAAATCGACAATGGCTG+AGG - chr4_2:43904172-43904191 Msa0601320:three_prime_UTR 45.0%
AAAATCGACAATGGCTGAGG+CGG - chr4_2:43904175-43904194 Msa0601320:three_prime_UTR 45.0%
! ACACGGCGTACGATAGTTTT+GGG + chr4_2:43904209-43904228 None:intergenic 45.0%
AAAGCTTCTCCTTCACCACA+CGG + chr4_2:43904226-43904245 None:intergenic 45.0%
GTTCGTAGTTTGGAGGCAAT+GGG - chr4_2:43904645-43904664 Msa0601320:intron 45.0%
TTCGTAGTTTGGAGGCAATG+GGG - chr4_2:43904646-43904665 Msa0601320:intron 45.0%
!!! GGGTTTTGGAGATTGATTCC+TGG - chr4_2:43904724-43904743 Msa0601320:intron 45.0%
GACCAATATCTGCCCTAACT+TGG - chr4_2:43905557-43905576 Msa0601320:intron 45.0%
TGCCAAGTTAGGGCAGATAT+TGG + chr4_2:43905562-43905581 None:intergenic 45.0%
TGTCAAGGTCTGCCAAGTTA+GGG + chr4_2:43905572-43905591 None:intergenic 45.0%
GGAAAGAAAAGAAAGGCGGA+AGG - chr4_2:43905676-43905695 Msa0601320:intron 45.0%
CCACCATCACCTTTATCAGA+CGG + chr4_2:43905706-43905725 None:intergenic 45.0%
! GTTTTATGTCTCGGCTCAGT+TGG + chr4_2:43905782-43905801 None:intergenic 45.0%
TTCCTTCCATCAAGGGTTAG+TGG + chr4_2:43905926-43905945 None:intergenic 45.0%
! CACACGGCGTACGATAGTTT+TGG + chr4_2:43904210-43904229 None:intergenic 50.0%
CAAAACTATCGTACGCCGTG+TGG - chr4_2:43904208-43904227 Msa0601320:three_prime_UTR 50.0%
! CTTACGTAGCGGAAAGGTAG+TGG + chr4_2:43904328-43904347 None:intergenic 50.0%
! CAAGCACTTACGTAGCGGAA+AGG + chr4_2:43904334-43904353 None:intergenic 50.0%
GAAGGCAAGCACTTACGTAG+CGG + chr4_2:43904339-43904358 None:intergenic 50.0%
GGTTCGTAGTTTGGAGGCAA+TGG - chr4_2:43904644-43904663 Msa0601320:intron 50.0%
GTGTCAAGGTCTGCCAAGTT+AGG + chr4_2:43905573-43905592 None:intergenic 50.0%
AAGAAAGCGGCAGTGCCAAA+AGG - chr4_2:43905637-43905656 Msa0601320:intron 50.0%
GAGCCGTCTGATAAAGGTGA+TGG - chr4_2:43905700-43905719 Msa0601320:intron 50.0%
! CCGTCTGATAAAGGTGATGG+TGG - chr4_2:43905703-43905722 Msa0601320:intron 50.0%
ACGCAGGCATCCAAATGACA+AGG + chr4_2:43905834-43905853 None:intergenic 50.0%
TAGCCTCCACTAACCCTTGA+TGG - chr4_2:43905917-43905936 Msa0601320:CDS 50.0%
! CTTCCATCAAGGGTTAGTGG+AGG + chr4_2:43905923-43905942 None:intergenic 50.0%
CTCCACTAACCCTTGATGGA+AGG - chr4_2:43905921-43905940 Msa0601320:CDS 50.0%
! CACACGGCGTACGATAGTTT+TGG + chr4_2:43904210-43904229 None:intergenic 50.0%
CAAAACTATCGTACGCCGTG+TGG - chr4_2:43904208-43904227 Msa0601320:three_prime_UTR 50.0%
! CTTACGTAGCGGAAAGGTAG+TGG + chr4_2:43904328-43904347 None:intergenic 50.0%
! CAAGCACTTACGTAGCGGAA+AGG + chr4_2:43904334-43904353 None:intergenic 50.0%
GAAGGCAAGCACTTACGTAG+CGG + chr4_2:43904339-43904358 None:intergenic 50.0%
GGTTCGTAGTTTGGAGGCAA+TGG - chr4_2:43904644-43904663 Msa0601320:intron 50.0%
GTGTCAAGGTCTGCCAAGTT+AGG + chr4_2:43905573-43905592 None:intergenic 50.0%
AAGAAAGCGGCAGTGCCAAA+AGG - chr4_2:43905637-43905656 Msa0601320:intron 50.0%
GAGCCGTCTGATAAAGGTGA+TGG - chr4_2:43905700-43905719 Msa0601320:intron 50.0%
! CCGTCTGATAAAGGTGATGG+TGG - chr4_2:43905703-43905722 Msa0601320:intron 50.0%
ACGCAGGCATCCAAATGACA+AGG + chr4_2:43905834-43905853 None:intergenic 50.0%
TAGCCTCCACTAACCCTTGA+TGG - chr4_2:43905917-43905936 Msa0601320:CDS 50.0%
! CTTCCATCAAGGGTTAGTGG+AGG + chr4_2:43905923-43905942 None:intergenic 50.0%
CTCCACTAACCCTTGATGGA+AGG - chr4_2:43905921-43905940 Msa0601320:CDS 50.0%
TATCGTACGCCGTGTGGTGA+AGG - chr4_2:43904214-43904233 Msa0601320:three_prime_UTR 55.0%
CTTTCCACTTGCTCCGACGA+CGG - chr4_2:43904242-43904261 Msa0601320:three_prime_UTR 55.0%
AGCGGCAGTGCCAAAAGGAA+AGG - chr4_2:43905642-43905661 Msa0601320:intron 55.0%
GCGGCAGTGCCAAAAGGAAA+GGG - chr4_2:43905643-43905662 Msa0601320:intron 55.0%
GAAGGCGAGCCGTCTGATAA+AGG - chr4_2:43905694-43905713 Msa0601320:intron 55.0%
TATCGTACGCCGTGTGGTGA+AGG - chr4_2:43904214-43904233 Msa0601320:three_prime_UTR 55.0%
CTTTCCACTTGCTCCGACGA+CGG - chr4_2:43904242-43904261 Msa0601320:three_prime_UTR 55.0%
AGCGGCAGTGCCAAAAGGAA+AGG - chr4_2:43905642-43905661 Msa0601320:intron 55.0%
GCGGCAGTGCCAAAAGGAAA+GGG - chr4_2:43905643-43905662 Msa0601320:intron 55.0%
GAAGGCGAGCCGTCTGATAA+AGG - chr4_2:43905694-43905713 Msa0601320:intron 55.0%
ATCGACAATGGCTGAGGCGG+AGG - chr4_2:43904178-43904197 Msa0601320:three_prime_UTR 60.0%
AACGGCAATGTCGCCGTCGT+CGG + chr4_2:43904258-43904277 None:intergenic 60.0%
ATCGACAATGGCTGAGGCGG+AGG - chr4_2:43904178-43904197 Msa0601320:three_prime_UTR 60.0%
AACGGCAATGTCGCCGTCGT+CGG + chr4_2:43904258-43904277 None:intergenic 60.0%
GTCGCCGTCGTCGGAGCAAG+TGG + chr4_2:43904249-43904268 None:intergenic 70.0%
GTCGCCGTCGTCGGAGCAAG+TGG + chr4_2:43904249-43904268 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 43904022 43906216 43904022 ID=Msa0601320;Name=Msa0601320
chr4_2 mRNA 43904022 43906216 43904022 ID=Msa0601320-mRNA-1;Parent=Msa0601320;Name=Msa0601320-mRNA-1;_AED=0.03;_eAED=0.03;_QI=163|1|1|1|1|1|3|475|134
chr4_2 exon 43904022 43904624 43904022 ID=Msa0601320-mRNA-1:exon:9640;Parent=Msa0601320-mRNA-1
chr4_2 exon 43905301 43905419 43905301 ID=Msa0601320-mRNA-1:exon:9639;Parent=Msa0601320-mRNA-1
chr4_2 exon 43905896 43906216 43905896 ID=Msa0601320-mRNA-1:exon:9638;Parent=Msa0601320-mRNA-1
chr4_2 five_prime_UTR 43906054 43906216 43906054 ID=Msa0601320-mRNA-1:five_prime_utr;Parent=Msa0601320-mRNA-1
chr4_2 CDS 43905896 43906053 43905896 ID=Msa0601320-mRNA-1:cds;Parent=Msa0601320-mRNA-1
chr4_2 CDS 43905301 43905419 43905301 ID=Msa0601320-mRNA-1:cds;Parent=Msa0601320-mRNA-1
chr4_2 CDS 43904497 43904624 43904497 ID=Msa0601320-mRNA-1:cds;Parent=Msa0601320-mRNA-1
chr4_2 three_prime_UTR 43904022 43904496 43904022 ID=Msa0601320-mRNA-1:three_prime_utr;Parent=Msa0601320-mRNA-1
Gene Sequence

>Msa0601320

ATGGCTGAGGCGGAGGAGCTTCCCAAAACTATCGTACGCCGTGTGGTGAAGGAGAAGCTTTCCACTTGCTCCGACGACGGCGACATTGCCGTTCACAAAGACGCTCTTCTTGCATTCTCCGAAAGTGCCAGAATCTTCATCCACTACCTTTCCGCTACGGCTAATGATATATGTAGGGAGTCAAAGAGGCAAATCATCAATGCTGAAGATGTGTTCAAAGCTCTTGAAGAAACAGAGTTTACTGAGTTTGTTGGGCCTCTAAAAGATTCTCTTGAAGAGTTTAGGAAAAAGAATGCTGGGAAGAAAGCGGCAGTGCCAAAAGGAAAGGGAGATGAGAAGGGAAAGAAAAGAAAGGCGGAAGGCGAGCCGTCTGATAAAGGTGATGGTGGTGATGATGACCAATGA
Protein sequence

>Msa0601320

MAEAEELPKTIVRRVVKEKLSTCSDDGDIAVHKDALLAFSESARIFIHYLSATANDICRESKRQIINAEDVFKALEETEFTEFVGPLKDSLEEFRKKNAGKKAAVPKGKGDEKGKKRKAEGEPSDKGDGGDDDQ*