AlfalfaGEDB | Msa0601320

M. sativa cultivar zhongmu-4 / Msa0601320

KEGG: K02326
GO: GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008622 GO:0031974 GO:0031981 GO:0032991 GO:0042575 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0061695 GO:0070013 GO:1902494 GO:1990234
PFAM: PF00808.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0601320	APC23631.1	100.000	134	0	0	1	134	1	134	1.99e-90	268

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0601320	sp\|Q9ZQH2\|DPB4_ARATH	69.231	91	28	0	4	94	8	98	2.62e-40	138

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0601320	TF	NF-YB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0601320	MtrunA17_Chr4g0026311	93.571	140	3	1	1	134	1	140	5.89e-89	254

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0601320	AT2G27470.1	69.231	91	28	0	4	94	8	98	2.67e-41	138
Msa0601320	AT3G53340.5	33.051	118	69	4	7	124	34	141	4.64e-11	57.8
Msa0601320	AT3G53340.1	33.051	118	69	4	7	124	34	141	4.64e-11	57.8

Showing 1 to 3 of 3 entries

Previous1Next

Find 72 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAAGGGAGATGAGA+AGG	0.549945	4_2:-43904562	Msa0601320:CDS
AAAATCGACAATGGCTGAGG+CGG	0.566675	4_2:-43906041	Msa0601320:exon
AAAGAATGCTGGGAAGAAAG+CGG	0.668115	4_2:-43904592	Msa0601320:CDS
AAAGCTTCTCCTTCACCACA+CGG	0.706469	4_2:+43905993	None:intergenic
AAAGGAAAGGGAGATGAGAA+GGG	0.589156	4_2:-43904561	Msa0601320:CDS
AACGGCAATGTCGCCGTCGT+CGG	0.485500	4_2:+43905961	None:intergenic
AAGAAAGCGGCAGTGCCAAA+AGG	0.559929	4_2:-43904579	Msa0601320:CDS
AAGAAGAGCGTCTTTGTGAA+CGG	0.610289	4_2:+43905943	None:intergenic
AAGCTAAGTGGTGATATGGC+GGG	0.590519	4_2:-43906164	Msa0601320:five_prime_UTR
AAGGTAGTGGATGAAGATTC+TGG	0.398524	4_2:+43905904	None:intergenic

Showing 1 to 10 of 72 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTGAATTGGGATTGGAATTA+GGG	+	chr4_2:43904115-43904134	None:intergenic	30.0%
TTTGAATTGGGATTGGAATT+AGG	+	chr4_2:43904116-43904135	None:intergenic	30.0%
TTGGAATTAGGGTTTGAATT+GGG	+	chr4_2:43904128-43904147	None:intergenic	30.0%
ATTGGAATTAGGGTTTGAAT+TGG	+	chr4_2:43904129-43904148	None:intergenic	30.0%
AAATTAGGGTTTCAGATAGA+AGG	+	chr4_2:43904357-43904376	None:intergenic	30.0%
TGAAACTTTGATTGTAAGGA+AGG	-	chr4_2:43904502-43904521	Msa0601320:CDS	30.0%
AAGGAAGGAGATGAAAATTA+TGG	-	chr4_2:43904517-43904536	Msa0601320:CDS	30.0%
ATGGGAACTTTGTAATAAAG+AGG	-	chr4_2:43904610-43904629	Msa0601320:intron	30.0%
AAAAATTAGGGTTCGTAGTT+TGG	-	chr4_2:43904635-43904654	Msa0601320:intron	30.0%
TTCCTGGGTGATTATAAAAA+TGG	-	chr4_2:43904740-43904759	Msa0601320:intron	30.0%

Showing 1 to 10 of 352 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	43904022	43906216	43904022	ID=Msa0601320;Name=Msa0601320
chr4_2	mRNA	43904022	43906216	43904022	ID=Msa0601320-mRNA-1;Parent=Msa0601320;Name=Msa0601320-mRNA-1;_AED=0.03;_eAED=0.03;_QI=163\|1\|1\|1\|1\|1\|3\|475\|134
chr4_2	exon	43904022	43904624	43904022	ID=Msa0601320-mRNA-1:exon:9640;Parent=Msa0601320-mRNA-1
chr4_2	exon	43905301	43905419	43905301	ID=Msa0601320-mRNA-1:exon:9639;Parent=Msa0601320-mRNA-1
chr4_2	exon	43905896	43906216	43905896	ID=Msa0601320-mRNA-1:exon:9638;Parent=Msa0601320-mRNA-1
chr4_2	five_prime_UTR	43906054	43906216	43906054	ID=Msa0601320-mRNA-1:five_prime_utr;Parent=Msa0601320-mRNA-1
chr4_2	CDS	43905896	43906053	43905896	ID=Msa0601320-mRNA-1:cds;Parent=Msa0601320-mRNA-1
chr4_2	CDS	43905301	43905419	43905301	ID=Msa0601320-mRNA-1:cds;Parent=Msa0601320-mRNA-1
chr4_2	CDS	43904497	43904624	43904497	ID=Msa0601320-mRNA-1:cds;Parent=Msa0601320-mRNA-1
chr4_2	three_prime_UTR	43904022	43904496	43904022	ID=Msa0601320-mRNA-1:three_prime_utr;Parent=Msa0601320-mRNA-1

Gene Sequence

>Msa0601320

ATGGCTGAGGCGGAGGAGCTTCCCAAAACTATCGTACGCCGTGTGGTGAAGGAGAAGCTTTCCACTTGCTCCGACGACGGCGACATTGCCGTTCACAAAGACGCTCTTCTTGCATTCTCCGAAAGTGCCAGAATCTTCATCCACTACCTTTCCGCTACGGCTAATGATATATGTAGGGAGTCAAAGAGGCAAATCATCAATGCTGAAGATGTGTTCAAAGCTCTTGAAGAAACAGAGTTTACTGAGTTTGTTGGGCCTCTAAAAGATTCTCTTGAAGAGTTTAGGAAAAAGAATGCTGGGAAGAAAGCGGCAGTGCCAAAAGGAAAGGGAGATGAGAAGGGAAAGAAAAGAAAGGCGGAAGGCGAGCCGTCTGATAAAGGTGATGGTGGTGATGATGACCAATGA

Protein sequence

>Msa0601320

MAEAEELPKTIVRRVVKEKLSTCSDDGDIAVHKDALLAFSESARIFIHYLSATANDICRESKRQIINAEDVFKALEETEFTEFVGPLKDSLEEFRKKNAGKKAAVPKGKGDEKGKKRKAEGEPSDKGDGGDDDQ*